Multiple sequence alignment - TraesCS6B01G202600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G202600 chr6B 100.000 4049 0 0 1 4049 248347443 248351491 0.000000e+00 7478
1 TraesCS6B01G202600 chr6D 91.628 2174 112 31 1451 3577 142742171 142744321 0.000000e+00 2942
2 TraesCS6B01G202600 chr6D 92.435 727 37 7 742 1452 142741409 142742133 0.000000e+00 1022
3 TraesCS6B01G202600 chr6D 87.500 472 22 18 3592 4049 142744375 142744823 1.000000e-140 510
4 TraesCS6B01G202600 chr6A 91.298 1965 98 33 1662 3577 187733845 187735785 0.000000e+00 2614
5 TraesCS6B01G202600 chr6A 86.281 1261 102 33 216 1446 187732289 187733508 0.000000e+00 1304
6 TraesCS6B01G202600 chr6A 86.531 490 17 23 3590 4049 187735827 187736297 1.010000e-135 494


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G202600 chr6B 248347443 248351491 4048 False 7478.000000 7478 100.000000 1 4049 1 chr6B.!!$F1 4048
1 TraesCS6B01G202600 chr6D 142741409 142744823 3414 False 1491.333333 2942 90.521000 742 4049 3 chr6D.!!$F1 3307
2 TraesCS6B01G202600 chr6A 187732289 187736297 4008 False 1470.666667 2614 88.036667 216 4049 3 chr6A.!!$F1 3833

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
376 378 0.037326 TCGTGCTCATCAACACCCTC 60.037 55.0 0.00 0.00 33.09 4.30 F
478 487 0.094216 CGTTGCGACAGCTGAATCAG 59.906 55.0 23.35 5.78 45.42 2.90 F
685 697 0.105194 TGAGTGGAAGTGGGAGGTCA 60.105 55.0 0.00 0.00 0.00 4.02 F
1454 1485 0.524862 GCCTTGAGGTTCTGTGCATG 59.475 55.0 0.00 0.00 37.57 4.06 F
2815 3065 0.887387 TACGGACAAGCACCTTTGGC 60.887 55.0 0.00 0.00 35.26 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1761 1989 0.250467 TGCTCCTGTGCTCACCTTTC 60.250 55.000 0.0 0.0 0.00 2.62 R
1765 1993 0.952984 GTCTTGCTCCTGTGCTCACC 60.953 60.000 0.0 0.0 0.00 4.02 R
2011 2249 1.237285 ATGTTTCGGTGTCAGCCTGC 61.237 55.000 0.0 0.0 0.00 4.85 R
2979 3229 1.070376 CGATGTTCGCACAGCCATATG 60.070 52.381 0.0 0.0 35.78 1.78 R
3861 4217 1.142060 TCGGGAGTTTCTTTCTTGGCA 59.858 47.619 0.0 0.0 0.00 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.731720 CTCCAGTCAGCAGTTTAGGC 58.268 55.000 0.00 0.00 0.00 3.93
20 21 1.277557 CTCCAGTCAGCAGTTTAGGCT 59.722 52.381 0.00 0.00 43.77 4.58
27 28 1.747709 AGCAGTTTAGGCTGAGCATG 58.252 50.000 6.82 0.00 40.80 4.06
28 29 0.737219 GCAGTTTAGGCTGAGCATGG 59.263 55.000 6.82 0.00 38.70 3.66
29 30 0.737219 CAGTTTAGGCTGAGCATGGC 59.263 55.000 6.82 0.00 38.70 4.40
34 35 4.746309 GGCTGAGCATGGCCACCA 62.746 66.667 8.16 2.85 46.84 4.17
35 36 2.677524 GCTGAGCATGGCCACCAA 60.678 61.111 8.16 0.00 36.95 3.67
36 37 2.707849 GCTGAGCATGGCCACCAAG 61.708 63.158 8.16 2.63 36.95 3.61
37 38 2.036098 TGAGCATGGCCACCAAGG 59.964 61.111 8.16 0.00 36.95 3.61
46 47 3.364442 CCACCAAGGCGCAATTCA 58.636 55.556 10.83 0.00 0.00 2.57
47 48 1.892338 CCACCAAGGCGCAATTCAT 59.108 52.632 10.83 0.00 0.00 2.57
48 49 0.179129 CCACCAAGGCGCAATTCATC 60.179 55.000 10.83 0.00 0.00 2.92
49 50 0.527113 CACCAAGGCGCAATTCATCA 59.473 50.000 10.83 0.00 0.00 3.07
50 51 0.527565 ACCAAGGCGCAATTCATCAC 59.472 50.000 10.83 0.00 0.00 3.06
51 52 0.527113 CCAAGGCGCAATTCATCACA 59.473 50.000 10.83 0.00 0.00 3.58
52 53 1.621107 CAAGGCGCAATTCATCACAC 58.379 50.000 10.83 0.00 0.00 3.82
53 54 1.200716 CAAGGCGCAATTCATCACACT 59.799 47.619 10.83 0.00 0.00 3.55
54 55 1.089920 AGGCGCAATTCATCACACTC 58.910 50.000 10.83 0.00 0.00 3.51
55 56 1.089920 GGCGCAATTCATCACACTCT 58.910 50.000 10.83 0.00 0.00 3.24
56 57 1.063174 GGCGCAATTCATCACACTCTC 59.937 52.381 10.83 0.00 0.00 3.20
57 58 1.267235 GCGCAATTCATCACACTCTCG 60.267 52.381 0.30 0.00 0.00 4.04
58 59 1.325640 CGCAATTCATCACACTCTCGG 59.674 52.381 0.00 0.00 0.00 4.63
59 60 2.621338 GCAATTCATCACACTCTCGGA 58.379 47.619 0.00 0.00 0.00 4.55
60 61 2.606725 GCAATTCATCACACTCTCGGAG 59.393 50.000 0.00 0.00 35.52 4.63
61 62 3.193263 CAATTCATCACACTCTCGGAGG 58.807 50.000 4.96 0.00 33.35 4.30
62 63 0.532573 TTCATCACACTCTCGGAGGC 59.467 55.000 4.96 0.00 33.35 4.70
63 64 1.142748 CATCACACTCTCGGAGGCC 59.857 63.158 4.96 0.00 33.35 5.19
64 65 1.000993 ATCACACTCTCGGAGGCCT 59.999 57.895 3.86 3.86 33.35 5.19
65 66 0.616111 ATCACACTCTCGGAGGCCTT 60.616 55.000 6.77 0.00 33.35 4.35
66 67 1.079543 CACACTCTCGGAGGCCTTG 60.080 63.158 6.77 2.45 33.35 3.61
67 68 2.286523 ACACTCTCGGAGGCCTTGG 61.287 63.158 6.77 1.30 33.35 3.61
68 69 1.984570 CACTCTCGGAGGCCTTGGA 60.985 63.158 6.77 6.62 33.35 3.53
69 70 1.229209 ACTCTCGGAGGCCTTGGAA 60.229 57.895 6.77 0.00 33.35 3.53
70 71 0.618968 ACTCTCGGAGGCCTTGGAAT 60.619 55.000 6.77 0.00 33.35 3.01
71 72 0.105778 CTCTCGGAGGCCTTGGAATC 59.894 60.000 6.77 0.00 0.00 2.52
72 73 1.227380 CTCGGAGGCCTTGGAATCG 60.227 63.158 6.77 4.99 0.00 3.34
73 74 2.897350 CGGAGGCCTTGGAATCGC 60.897 66.667 6.77 0.00 0.00 4.58
74 75 2.517166 GGAGGCCTTGGAATCGCC 60.517 66.667 6.77 0.00 43.35 5.54
77 78 2.437716 GGCCTTGGAATCGCCGAA 60.438 61.111 0.00 0.00 40.66 4.30
78 79 2.043980 GGCCTTGGAATCGCCGAAA 61.044 57.895 0.00 0.00 40.66 3.46
79 80 1.136774 GCCTTGGAATCGCCGAAAC 59.863 57.895 0.00 0.00 40.66 2.78
80 81 1.305930 GCCTTGGAATCGCCGAAACT 61.306 55.000 0.00 0.00 40.66 2.66
81 82 0.447801 CCTTGGAATCGCCGAAACTG 59.552 55.000 0.00 0.00 40.66 3.16
82 83 1.156736 CTTGGAATCGCCGAAACTGT 58.843 50.000 0.00 0.00 40.66 3.55
83 84 1.128692 CTTGGAATCGCCGAAACTGTC 59.871 52.381 0.00 0.00 40.66 3.51
84 85 0.672401 TGGAATCGCCGAAACTGTCC 60.672 55.000 0.00 0.00 40.66 4.02
85 86 0.391263 GGAATCGCCGAAACTGTCCT 60.391 55.000 0.00 0.00 0.00 3.85
86 87 1.439679 GAATCGCCGAAACTGTCCTT 58.560 50.000 0.00 0.00 0.00 3.36
87 88 1.393883 GAATCGCCGAAACTGTCCTTC 59.606 52.381 0.00 0.00 0.00 3.46
88 89 0.391263 ATCGCCGAAACTGTCCTTCC 60.391 55.000 0.00 0.00 0.00 3.46
89 90 1.004918 CGCCGAAACTGTCCTTCCT 60.005 57.895 0.00 0.00 0.00 3.36
90 91 1.014564 CGCCGAAACTGTCCTTCCTC 61.015 60.000 0.00 0.00 0.00 3.71
91 92 0.321996 GCCGAAACTGTCCTTCCTCT 59.678 55.000 0.00 0.00 0.00 3.69
92 93 1.673329 GCCGAAACTGTCCTTCCTCTC 60.673 57.143 0.00 0.00 0.00 3.20
93 94 1.896465 CCGAAACTGTCCTTCCTCTCT 59.104 52.381 0.00 0.00 0.00 3.10
94 95 2.353208 CCGAAACTGTCCTTCCTCTCTG 60.353 54.545 0.00 0.00 0.00 3.35
95 96 2.353208 CGAAACTGTCCTTCCTCTCTGG 60.353 54.545 0.00 0.00 37.10 3.86
96 97 0.980423 AACTGTCCTTCCTCTCTGGC 59.020 55.000 0.00 0.00 35.26 4.85
97 98 0.907230 ACTGTCCTTCCTCTCTGGCC 60.907 60.000 0.00 0.00 35.26 5.36
98 99 0.617249 CTGTCCTTCCTCTCTGGCCT 60.617 60.000 3.32 0.00 35.26 5.19
99 100 0.906756 TGTCCTTCCTCTCTGGCCTG 60.907 60.000 3.32 2.92 35.26 4.85
100 101 1.992277 TCCTTCCTCTCTGGCCTGC 60.992 63.158 3.32 0.00 35.26 4.85
101 102 2.588989 CTTCCTCTCTGGCCTGCC 59.411 66.667 3.32 0.00 35.26 4.85
102 103 3.382803 CTTCCTCTCTGGCCTGCCG 62.383 68.421 3.32 0.00 39.42 5.69
117 118 4.169696 CCGGGGTGAGCCGCATTA 62.170 66.667 0.00 0.00 46.90 1.90
118 119 2.111043 CGGGGTGAGCCGCATTAT 59.889 61.111 0.00 0.00 46.90 1.28
119 120 1.961277 CGGGGTGAGCCGCATTATC 60.961 63.158 0.00 0.00 46.90 1.75
120 121 1.961277 GGGGTGAGCCGCATTATCG 60.961 63.158 0.00 0.00 45.94 2.92
121 122 2.607892 GGGTGAGCCGCATTATCGC 61.608 63.158 0.00 0.00 34.97 4.58
122 123 2.607892 GGTGAGCCGCATTATCGCC 61.608 63.158 0.00 0.00 36.53 5.54
123 124 2.280797 TGAGCCGCATTATCGCCC 60.281 61.111 0.00 0.00 0.00 6.13
124 125 2.280797 GAGCCGCATTATCGCCCA 60.281 61.111 0.00 0.00 0.00 5.36
125 126 1.672356 GAGCCGCATTATCGCCCAT 60.672 57.895 0.00 0.00 0.00 4.00
126 127 1.639298 GAGCCGCATTATCGCCCATC 61.639 60.000 0.00 0.00 0.00 3.51
127 128 1.965930 GCCGCATTATCGCCCATCA 60.966 57.895 0.00 0.00 0.00 3.07
128 129 1.514678 GCCGCATTATCGCCCATCAA 61.515 55.000 0.00 0.00 0.00 2.57
129 130 1.167851 CCGCATTATCGCCCATCAAT 58.832 50.000 0.00 0.00 0.00 2.57
130 131 2.355197 CCGCATTATCGCCCATCAATA 58.645 47.619 0.00 0.00 0.00 1.90
131 132 2.095853 CCGCATTATCGCCCATCAATAC 59.904 50.000 0.00 0.00 0.00 1.89
132 133 3.002791 CGCATTATCGCCCATCAATACT 58.997 45.455 0.00 0.00 0.00 2.12
133 134 3.181517 CGCATTATCGCCCATCAATACTG 60.182 47.826 0.00 0.00 0.00 2.74
134 135 3.753272 GCATTATCGCCCATCAATACTGT 59.247 43.478 0.00 0.00 0.00 3.55
135 136 4.142816 GCATTATCGCCCATCAATACTGTC 60.143 45.833 0.00 0.00 0.00 3.51
136 137 2.154854 ATCGCCCATCAATACTGTCG 57.845 50.000 0.00 0.00 0.00 4.35
137 138 1.107945 TCGCCCATCAATACTGTCGA 58.892 50.000 0.00 0.00 0.00 4.20
138 139 1.202371 TCGCCCATCAATACTGTCGAC 60.202 52.381 9.11 9.11 0.00 4.20
139 140 1.209128 GCCCATCAATACTGTCGACG 58.791 55.000 11.62 8.41 0.00 5.12
140 141 1.470979 GCCCATCAATACTGTCGACGT 60.471 52.381 11.62 13.86 0.00 4.34
141 142 2.193447 CCCATCAATACTGTCGACGTG 58.807 52.381 18.82 13.33 0.00 4.49
142 143 2.193447 CCATCAATACTGTCGACGTGG 58.807 52.381 18.82 11.13 0.00 4.94
143 144 2.416836 CCATCAATACTGTCGACGTGGT 60.417 50.000 18.82 15.44 0.00 4.16
144 145 2.341318 TCAATACTGTCGACGTGGTG 57.659 50.000 18.82 15.94 0.00 4.17
145 146 0.713883 CAATACTGTCGACGTGGTGC 59.286 55.000 18.82 0.00 0.00 5.01
147 148 2.537792 ATACTGTCGACGTGGTGCGG 62.538 60.000 18.82 0.00 46.52 5.69
166 167 3.057018 CGGCGCGCAATTAATGTAG 57.943 52.632 34.42 6.22 0.00 2.74
167 168 0.384230 CGGCGCGCAATTAATGTAGG 60.384 55.000 34.42 2.43 0.00 3.18
168 169 0.661020 GGCGCGCAATTAATGTAGGT 59.339 50.000 34.42 0.00 0.00 3.08
169 170 1.064952 GGCGCGCAATTAATGTAGGTT 59.935 47.619 34.42 0.00 0.00 3.50
170 171 2.478879 GGCGCGCAATTAATGTAGGTTT 60.479 45.455 34.42 0.00 0.00 3.27
171 172 2.781646 GCGCGCAATTAATGTAGGTTTC 59.218 45.455 29.10 0.00 0.00 2.78
172 173 3.359654 CGCGCAATTAATGTAGGTTTCC 58.640 45.455 8.75 0.00 0.00 3.13
173 174 3.064820 CGCGCAATTAATGTAGGTTTCCT 59.935 43.478 8.75 0.00 37.71 3.36
174 175 4.351192 GCGCAATTAATGTAGGTTTCCTG 58.649 43.478 0.30 0.00 34.61 3.86
175 176 4.351192 CGCAATTAATGTAGGTTTCCTGC 58.649 43.478 0.00 0.00 36.77 4.85
176 177 4.096382 CGCAATTAATGTAGGTTTCCTGCT 59.904 41.667 5.59 0.00 37.16 4.24
177 178 5.295787 CGCAATTAATGTAGGTTTCCTGCTA 59.704 40.000 5.59 0.00 37.16 3.49
178 179 6.511767 CGCAATTAATGTAGGTTTCCTGCTAG 60.512 42.308 5.59 0.00 37.16 3.42
179 180 6.729187 CAATTAATGTAGGTTTCCTGCTAGC 58.271 40.000 8.10 8.10 37.16 3.42
180 181 5.693769 TTAATGTAGGTTTCCTGCTAGCT 57.306 39.130 17.23 0.00 37.16 3.32
181 182 6.801718 TTAATGTAGGTTTCCTGCTAGCTA 57.198 37.500 17.23 1.31 37.16 3.32
182 183 4.946478 ATGTAGGTTTCCTGCTAGCTAG 57.054 45.455 16.84 16.84 37.16 3.42
183 184 3.709587 TGTAGGTTTCCTGCTAGCTAGT 58.290 45.455 21.62 1.47 37.16 2.57
184 185 3.447586 TGTAGGTTTCCTGCTAGCTAGTG 59.552 47.826 21.62 14.27 37.16 2.74
185 186 2.541466 AGGTTTCCTGCTAGCTAGTGT 58.459 47.619 21.62 0.00 29.57 3.55
186 187 2.234908 AGGTTTCCTGCTAGCTAGTGTG 59.765 50.000 21.62 11.67 29.57 3.82
187 188 2.003301 GTTTCCTGCTAGCTAGTGTGC 58.997 52.381 21.62 9.08 0.00 4.57
188 189 0.537188 TTCCTGCTAGCTAGTGTGCC 59.463 55.000 21.62 5.55 0.00 5.01
189 190 0.614697 TCCTGCTAGCTAGTGTGCCA 60.615 55.000 21.62 9.83 0.00 4.92
190 191 0.467384 CCTGCTAGCTAGTGTGCCAT 59.533 55.000 21.62 0.00 0.00 4.40
191 192 1.539929 CCTGCTAGCTAGTGTGCCATC 60.540 57.143 21.62 3.42 0.00 3.51
192 193 0.465705 TGCTAGCTAGTGTGCCATCC 59.534 55.000 21.62 2.71 0.00 3.51
193 194 0.755686 GCTAGCTAGTGTGCCATCCT 59.244 55.000 21.62 0.00 0.00 3.24
194 195 1.964223 GCTAGCTAGTGTGCCATCCTA 59.036 52.381 21.62 0.00 0.00 2.94
195 196 2.288518 GCTAGCTAGTGTGCCATCCTAC 60.289 54.545 21.62 0.00 0.00 3.18
196 197 1.866015 AGCTAGTGTGCCATCCTACA 58.134 50.000 0.00 0.00 0.00 2.74
197 198 2.402564 AGCTAGTGTGCCATCCTACAT 58.597 47.619 0.00 0.00 0.00 2.29
198 199 2.103771 AGCTAGTGTGCCATCCTACATG 59.896 50.000 0.00 0.00 0.00 3.21
199 200 2.158900 GCTAGTGTGCCATCCTACATGT 60.159 50.000 2.69 2.69 0.00 3.21
200 201 3.069586 GCTAGTGTGCCATCCTACATGTA 59.930 47.826 5.25 5.25 0.00 2.29
201 202 4.442893 GCTAGTGTGCCATCCTACATGTAA 60.443 45.833 7.06 0.00 0.00 2.41
202 203 4.142609 AGTGTGCCATCCTACATGTAAG 57.857 45.455 7.06 0.53 0.00 2.34
203 204 2.614057 GTGTGCCATCCTACATGTAAGC 59.386 50.000 7.06 5.90 0.00 3.09
204 205 2.238395 TGTGCCATCCTACATGTAAGCA 59.762 45.455 7.06 8.27 0.00 3.91
205 206 2.614057 GTGCCATCCTACATGTAAGCAC 59.386 50.000 19.74 19.74 42.06 4.40
206 207 2.505407 TGCCATCCTACATGTAAGCACT 59.495 45.455 7.06 0.00 0.00 4.40
207 208 3.709141 TGCCATCCTACATGTAAGCACTA 59.291 43.478 7.06 0.00 0.00 2.74
208 209 4.347876 TGCCATCCTACATGTAAGCACTAT 59.652 41.667 7.06 0.00 0.00 2.12
209 210 4.692625 GCCATCCTACATGTAAGCACTATG 59.307 45.833 7.06 1.13 0.00 2.23
210 211 5.511373 GCCATCCTACATGTAAGCACTATGA 60.511 44.000 7.06 0.00 0.00 2.15
211 212 6.524734 CCATCCTACATGTAAGCACTATGAA 58.475 40.000 7.06 0.00 0.00 2.57
212 213 6.992123 CCATCCTACATGTAAGCACTATGAAA 59.008 38.462 7.06 0.00 0.00 2.69
213 214 7.172190 CCATCCTACATGTAAGCACTATGAAAG 59.828 40.741 7.06 0.00 0.00 2.62
214 215 7.418337 TCCTACATGTAAGCACTATGAAAGA 57.582 36.000 7.06 0.00 0.00 2.52
225 226 4.818546 GCACTATGAAAGACATGTAGGCAT 59.181 41.667 0.00 3.37 39.77 4.40
230 231 6.889301 ATGAAAGACATGTAGGCATTATGG 57.111 37.500 0.00 0.00 37.87 2.74
239 240 6.263842 ACATGTAGGCATTATGGAAGAACATG 59.736 38.462 0.00 9.40 44.42 3.21
242 243 3.879295 AGGCATTATGGAAGAACATGACG 59.121 43.478 0.00 0.00 32.39 4.35
243 244 3.876914 GGCATTATGGAAGAACATGACGA 59.123 43.478 0.00 0.00 32.39 4.20
255 256 1.691976 ACATGACGACACTTCCCTTCA 59.308 47.619 0.00 0.00 0.00 3.02
262 263 1.062488 ACACTTCCCTTCAGCCCTGT 61.062 55.000 0.00 0.00 0.00 4.00
265 266 2.527951 CTTCCCTTCAGCCCTGTCGG 62.528 65.000 0.00 0.00 0.00 4.79
281 282 3.440151 GGCGTGCCGGAGTATCTA 58.560 61.111 5.05 0.00 33.73 1.98
285 286 0.875728 CGTGCCGGAGTATCTAGAGG 59.124 60.000 5.05 0.00 33.73 3.69
286 287 1.814634 CGTGCCGGAGTATCTAGAGGT 60.815 57.143 5.05 0.00 33.73 3.85
287 288 1.609555 GTGCCGGAGTATCTAGAGGTG 59.390 57.143 5.05 0.00 33.73 4.00
295 297 5.220892 CGGAGTATCTAGAGGTGAACACTTC 60.221 48.000 8.64 8.64 34.83 3.01
300 302 1.059913 AGAGGTGAACACTTCCCTGG 58.940 55.000 12.21 0.00 38.07 4.45
314 316 2.000701 CCTGGTATGGGCTGGTGGA 61.001 63.158 0.00 0.00 0.00 4.02
315 317 1.355718 CCTGGTATGGGCTGGTGGAT 61.356 60.000 0.00 0.00 0.00 3.41
316 318 1.434188 CTGGTATGGGCTGGTGGATA 58.566 55.000 0.00 0.00 0.00 2.59
317 319 1.349026 CTGGTATGGGCTGGTGGATAG 59.651 57.143 0.00 0.00 0.00 2.08
327 329 2.268298 CTGGTGGATAGCGTACAACAC 58.732 52.381 0.00 0.00 31.80 3.32
332 334 1.553308 GATAGCGTACAACACCGTCC 58.447 55.000 0.00 0.00 0.00 4.79
333 335 0.889994 ATAGCGTACAACACCGTCCA 59.110 50.000 0.00 0.00 0.00 4.02
335 337 0.877213 AGCGTACAACACCGTCCAAC 60.877 55.000 0.00 0.00 0.00 3.77
339 341 0.107081 TACAACACCGTCCAACCAGG 59.893 55.000 0.00 0.00 39.47 4.45
376 378 0.037326 TCGTGCTCATCAACACCCTC 60.037 55.000 0.00 0.00 33.09 4.30
386 388 1.019278 CAACACCCTCGATGGTTCGG 61.019 60.000 9.96 1.99 45.53 4.30
387 389 2.511600 CACCCTCGATGGTTCGGC 60.512 66.667 9.96 0.00 45.53 5.54
393 395 1.667154 CTCGATGGTTCGGCCTCAGA 61.667 60.000 0.00 0.00 45.53 3.27
411 420 2.196776 GGGCTGGCTATGGTGCAT 59.803 61.111 0.00 0.00 34.04 3.96
414 423 1.450531 GGCTGGCTATGGTGCATCAC 61.451 60.000 0.00 0.00 34.04 3.06
415 424 0.749091 GCTGGCTATGGTGCATCACA 60.749 55.000 0.00 0.00 35.86 3.58
424 433 0.321021 GGTGCATCACATTTTGGGCA 59.679 50.000 0.00 0.00 35.86 5.36
432 441 0.244450 ACATTTTGGGCAGCGATGTG 59.756 50.000 1.22 0.00 30.37 3.21
441 450 2.555199 GGCAGCGATGTGATAGTCTTT 58.445 47.619 1.22 0.00 0.00 2.52
442 451 2.541762 GGCAGCGATGTGATAGTCTTTC 59.458 50.000 1.22 0.00 0.00 2.62
450 459 4.655762 TGTGATAGTCTTTCAGATCGGG 57.344 45.455 0.00 0.00 0.00 5.14
469 478 4.760047 CCCTCCCCGTTGCGACAG 62.760 72.222 4.64 0.00 0.00 3.51
476 485 1.421485 CCGTTGCGACAGCTGAATC 59.579 57.895 23.35 7.57 45.42 2.52
477 486 1.291184 CCGTTGCGACAGCTGAATCA 61.291 55.000 23.35 11.40 45.42 2.57
478 487 0.094216 CGTTGCGACAGCTGAATCAG 59.906 55.000 23.35 5.78 45.42 2.90
496 505 7.971201 TGAATCAGATGAGTGATAAGCCTAAT 58.029 34.615 0.00 0.00 36.07 1.73
508 517 9.601217 AGTGATAAGCCTAATAAATAATAGCCG 57.399 33.333 0.00 0.00 0.00 5.52
515 525 1.141645 TAAATAATAGCCGCGCCACG 58.858 50.000 0.00 0.00 43.15 4.94
534 544 4.476628 ACGTTTCGTGTCCCCTAATTAT 57.523 40.909 0.00 0.00 39.18 1.28
540 551 2.104111 CGTGTCCCCTAATTATGGCAGA 59.896 50.000 1.40 0.00 0.00 4.26
556 567 8.945481 TTATGGCAGATTTTAATGATGGTTTG 57.055 30.769 0.00 0.00 0.00 2.93
561 572 6.711579 CAGATTTTAATGATGGTTTGCATGC 58.288 36.000 11.82 11.82 0.00 4.06
632 644 3.358076 GAGGTGGAGCCGGACGAAG 62.358 68.421 5.05 0.00 43.70 3.79
637 649 4.856607 GAGCCGGACGAAGCGGAG 62.857 72.222 5.05 0.00 35.16 4.63
643 655 3.692406 GACGAAGCGGAGTGGGGT 61.692 66.667 0.00 0.00 0.00 4.95
645 657 3.691342 CGAAGCGGAGTGGGGTGA 61.691 66.667 0.00 0.00 0.00 4.02
663 675 0.543174 GAGGTGAGGTGAGGGTGAGT 60.543 60.000 0.00 0.00 0.00 3.41
667 679 1.066573 GTGAGGTGAGGGTGAGTCATG 60.067 57.143 0.00 0.00 0.00 3.07
670 682 1.203237 AGGTGAGGGTGAGTCATGAGT 60.203 52.381 1.67 1.67 0.00 3.41
680 692 1.902508 GAGTCATGAGTGGAAGTGGGA 59.097 52.381 8.05 0.00 0.00 4.37
681 693 1.905215 AGTCATGAGTGGAAGTGGGAG 59.095 52.381 1.14 0.00 0.00 4.30
682 694 1.065854 GTCATGAGTGGAAGTGGGAGG 60.066 57.143 0.00 0.00 0.00 4.30
683 695 0.987294 CATGAGTGGAAGTGGGAGGT 59.013 55.000 0.00 0.00 0.00 3.85
684 696 1.065854 CATGAGTGGAAGTGGGAGGTC 60.066 57.143 0.00 0.00 0.00 3.85
685 697 0.105194 TGAGTGGAAGTGGGAGGTCA 60.105 55.000 0.00 0.00 0.00 4.02
686 698 1.056660 GAGTGGAAGTGGGAGGTCAA 58.943 55.000 0.00 0.00 0.00 3.18
687 699 1.420138 GAGTGGAAGTGGGAGGTCAAA 59.580 52.381 0.00 0.00 0.00 2.69
688 700 1.143073 AGTGGAAGTGGGAGGTCAAAC 59.857 52.381 0.00 0.00 0.00 2.93
689 701 1.143073 GTGGAAGTGGGAGGTCAAACT 59.857 52.381 0.00 0.00 0.00 2.66
690 702 2.370849 GTGGAAGTGGGAGGTCAAACTA 59.629 50.000 0.00 0.00 0.00 2.24
691 703 3.050089 TGGAAGTGGGAGGTCAAACTAA 58.950 45.455 0.00 0.00 0.00 2.24
699 711 4.103469 TGGGAGGTCAAACTAAACTAAGCA 59.897 41.667 0.00 0.00 0.00 3.91
701 713 5.710567 GGGAGGTCAAACTAAACTAAGCAAT 59.289 40.000 0.00 0.00 0.00 3.56
702 714 6.349363 GGGAGGTCAAACTAAACTAAGCAATG 60.349 42.308 0.00 0.00 0.00 2.82
706 718 9.297037 AGGTCAAACTAAACTAAGCAATGTAAT 57.703 29.630 0.00 0.00 0.00 1.89
711 723 7.242914 ACTAAACTAAGCAATGTAATACGGC 57.757 36.000 0.00 0.00 0.00 5.68
732 744 4.578105 GGCAGATGGATCCTTACTCTTTTG 59.422 45.833 14.23 1.44 0.00 2.44
735 747 6.823689 GCAGATGGATCCTTACTCTTTTGTTA 59.176 38.462 14.23 0.00 0.00 2.41
737 749 7.497249 CAGATGGATCCTTACTCTTTTGTTAGG 59.503 40.741 14.23 0.00 37.90 2.69
738 750 6.697641 TGGATCCTTACTCTTTTGTTAGGT 57.302 37.500 14.23 0.00 37.81 3.08
739 751 7.801893 TGGATCCTTACTCTTTTGTTAGGTA 57.198 36.000 14.23 0.00 37.81 3.08
740 752 8.388656 TGGATCCTTACTCTTTTGTTAGGTAT 57.611 34.615 14.23 0.00 37.81 2.73
741 753 9.496710 TGGATCCTTACTCTTTTGTTAGGTATA 57.503 33.333 14.23 0.00 37.81 1.47
742 754 9.984190 GGATCCTTACTCTTTTGTTAGGTATAG 57.016 37.037 3.84 0.00 37.81 1.31
857 869 0.897621 TCATCGGAAGCAGAAGCAGA 59.102 50.000 0.00 0.00 45.49 4.26
1141 1155 1.671054 CGTTCGCACAATCCAGGGT 60.671 57.895 0.00 0.00 0.00 4.34
1159 1174 3.512724 AGGGTTTCATCCTTTTGCTGATG 59.487 43.478 0.00 0.00 39.75 3.07
1168 1183 2.479049 CCTTTTGCTGATGGCGATTCTG 60.479 50.000 0.00 0.00 45.43 3.02
1269 1284 4.694982 TCTGTTCCGTACGTACAGATACAA 59.305 41.667 30.61 17.75 42.31 2.41
1376 1404 9.216117 CGAGGTTTCTCTTAAAGAAGGAAATAA 57.784 33.333 0.00 0.00 44.69 1.40
1446 1477 6.127980 GGTCAAATTTACTAGCCTTGAGGTTC 60.128 42.308 0.00 0.00 37.57 3.62
1452 1483 1.002430 CTAGCCTTGAGGTTCTGTGCA 59.998 52.381 0.00 0.00 37.57 4.57
1454 1485 0.524862 GCCTTGAGGTTCTGTGCATG 59.475 55.000 0.00 0.00 37.57 4.06
1455 1486 1.171308 CCTTGAGGTTCTGTGCATGG 58.829 55.000 0.00 0.00 0.00 3.66
1457 1488 2.233271 CTTGAGGTTCTGTGCATGGTT 58.767 47.619 0.00 0.00 0.00 3.67
1458 1489 1.608055 TGAGGTTCTGTGCATGGTTG 58.392 50.000 0.00 0.00 0.00 3.77
1484 1705 2.899303 TTTTTGGCCTTAGAGAGGGG 57.101 50.000 3.32 0.00 46.40 4.79
1505 1726 5.173664 GGGTTCTGGTATGTTGTACTGTAC 58.826 45.833 10.98 10.98 0.00 2.90
1516 1737 4.868450 TTGTACTGTACAAAGTGTGTGC 57.132 40.909 26.32 0.00 44.95 4.57
1634 1862 5.869344 GCTTGTGTGATGTCTTACAGTGATA 59.131 40.000 0.00 0.00 0.00 2.15
1636 1864 5.410924 TGTGTGATGTCTTACAGTGATAGC 58.589 41.667 0.00 0.00 0.00 2.97
1637 1865 5.047377 TGTGTGATGTCTTACAGTGATAGCA 60.047 40.000 0.00 0.00 0.00 3.49
1641 1869 8.424133 TGTGATGTCTTACAGTGATAGCATATT 58.576 33.333 0.00 0.00 0.00 1.28
1657 1885 9.698309 GATAGCATATTTGACAAGTTAGAGCTA 57.302 33.333 13.46 13.46 34.67 3.32
1660 1888 9.401058 AGCATATTTGACAAGTTAGAGCTATTT 57.599 29.630 0.00 0.00 0.00 1.40
1679 1907 6.145048 GCTATTTCATGGCTTACATCATTTGC 59.855 38.462 0.00 0.00 37.84 3.68
1708 1936 8.804688 TGTTTCGTTTTGAATAACTTTATGGG 57.195 30.769 0.00 0.00 36.22 4.00
1715 1943 9.974980 GTTTTGAATAACTTTATGGGAGTTCAA 57.025 29.630 0.00 0.00 38.28 2.69
1761 1989 7.697691 AGAAAATGGAGCATGATAACTAAACG 58.302 34.615 0.00 0.00 0.00 3.60
1765 1993 6.662414 TGGAGCATGATAACTAAACGAAAG 57.338 37.500 0.00 0.00 0.00 2.62
1858 2094 6.108687 TGTCACCAATTAAGCATGTAGAGAG 58.891 40.000 0.00 0.00 0.00 3.20
1947 2185 9.762381 AGGTATTTTGGTACTAATGAAATTCCA 57.238 29.630 10.84 0.00 37.87 3.53
2011 2249 7.263496 TCAATGAGAACTATGACTCTGATGTG 58.737 38.462 0.00 0.00 34.65 3.21
2140 2382 2.026729 TGTTGATTATTGTCAGGGCCGA 60.027 45.455 0.00 0.00 0.00 5.54
2174 2416 4.998033 GGAAGCATACTATGGAAGGTTAGC 59.002 45.833 0.00 0.00 0.00 3.09
2242 2484 4.526262 ACTTTAAATTACAGTGGCATGGCA 59.474 37.500 19.43 19.43 0.00 4.92
2255 2497 3.962063 TGGCATGGCAGTGATTTGATTAT 59.038 39.130 19.43 0.00 0.00 1.28
2270 2512 8.647796 TGATTTGATTATTGGAGACCGTACTAT 58.352 33.333 0.00 0.00 0.00 2.12
2275 2517 1.683943 TGGAGACCGTACTATTCCCG 58.316 55.000 0.00 0.00 0.00 5.14
2367 2609 8.277713 GCACATATTAAATCATCAATGTTTGGC 58.722 33.333 0.00 0.00 0.00 4.52
2571 2816 6.516739 TTATCATCTCTTACTATCTGGCCG 57.483 41.667 0.00 0.00 0.00 6.13
2696 2946 1.405526 GCTTGCGTAGTTCCCAGATGA 60.406 52.381 0.00 0.00 0.00 2.92
2774 3024 5.649782 ATGCTTCGACTGGATTCAAAATT 57.350 34.783 0.00 0.00 0.00 1.82
2815 3065 0.887387 TACGGACAAGCACCTTTGGC 60.887 55.000 0.00 0.00 35.26 4.52
2919 3169 9.388506 CTGAACAGAAGAATCCATACTTATTGT 57.611 33.333 0.00 0.00 0.00 2.71
2943 3193 6.254281 AGATTACACGATTTGTTTTGGGAG 57.746 37.500 0.00 0.00 39.91 4.30
2969 3219 5.241728 GCAAAATCTCACCTGAACCTACTTT 59.758 40.000 0.00 0.00 0.00 2.66
3015 3265 3.945434 CGTGATCATGCCAGCGCC 61.945 66.667 2.29 0.00 0.00 6.53
3148 3398 2.797074 TTGAACATGTCGTGTACGGA 57.203 45.000 0.00 0.00 41.14 4.69
3229 3484 1.336755 AGTGTTCAAAATGTGGGACGC 59.663 47.619 0.00 0.00 40.62 5.19
3338 3601 1.135431 GCCTTGCAAATGCGTGACATA 60.135 47.619 0.00 0.00 45.83 2.29
3358 3622 8.587608 TGACATATCAGATTGCTTTTTCCTTTT 58.412 29.630 0.00 0.00 0.00 2.27
3387 3651 3.057019 CAGACGGATCGAACTGAACAAA 58.943 45.455 8.69 0.00 37.15 2.83
3444 3708 0.666577 CTGACGAAGGGACAACGGAC 60.667 60.000 0.00 0.00 34.11 4.79
3490 3759 1.266867 ATCCATTTGCAAGGCCACCC 61.267 55.000 5.01 0.00 0.00 4.61
3491 3760 1.914764 CCATTTGCAAGGCCACCCT 60.915 57.895 5.01 0.00 45.77 4.34
3510 3800 1.209383 CACGAACGGAGAAGCGAGA 59.791 57.895 0.00 0.00 0.00 4.04
3524 3814 0.517316 GCGAGACAAAAATCGTGGCT 59.483 50.000 0.00 0.00 40.97 4.75
3525 3815 1.464189 GCGAGACAAAAATCGTGGCTC 60.464 52.381 0.00 0.00 46.10 4.70
3587 3878 4.441695 CGGCGGCTGCTCTCTTCA 62.442 66.667 18.85 0.00 42.25 3.02
3719 4065 3.529341 ATGCCACCGCGTGTCTTGA 62.529 57.895 4.92 0.00 38.08 3.02
3720 4066 2.970324 GCCACCGCGTGTCTTGAA 60.970 61.111 4.92 0.00 0.00 2.69
3727 4073 4.731667 CGTGTCTTGAAGCGCATG 57.268 55.556 11.47 0.00 0.00 4.06
3728 4074 1.133253 CGTGTCTTGAAGCGCATGG 59.867 57.895 11.47 0.00 0.00 3.66
3729 4075 1.154150 GTGTCTTGAAGCGCATGGC 60.154 57.895 11.47 0.00 44.05 4.40
3730 4076 2.334946 TGTCTTGAAGCGCATGGCC 61.335 57.895 11.47 0.00 45.17 5.36
3731 4077 2.033911 TCTTGAAGCGCATGGCCA 59.966 55.556 8.56 8.56 45.17 5.36
3732 4078 1.378911 TCTTGAAGCGCATGGCCAT 60.379 52.632 14.09 14.09 45.17 4.40
3797 4144 1.078426 CTCCCCCTCGCGTTTCAAT 60.078 57.895 5.77 0.00 0.00 2.57
3856 4212 1.006832 CGTTATCTGTTTGCCTCCCG 58.993 55.000 0.00 0.00 0.00 5.14
3857 4213 1.404986 CGTTATCTGTTTGCCTCCCGA 60.405 52.381 0.00 0.00 0.00 5.14
3858 4214 2.280628 GTTATCTGTTTGCCTCCCGAG 58.719 52.381 0.00 0.00 0.00 4.63
3860 4216 1.841302 ATCTGTTTGCCTCCCGAGCA 61.841 55.000 0.00 0.00 38.81 4.26
3861 4217 1.377725 CTGTTTGCCTCCCGAGCAT 60.378 57.895 0.00 0.00 40.59 3.79
3863 4219 2.751436 TTTGCCTCCCGAGCATGC 60.751 61.111 10.51 10.51 40.59 4.06
3889 4257 1.446272 GAAACTCCCGAGCACGAGG 60.446 63.158 4.70 4.90 42.66 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.277557 AGCCTAAACTGCTGACTGGAG 59.722 52.381 0.00 0.00 37.76 3.86
1 2 1.352083 AGCCTAAACTGCTGACTGGA 58.648 50.000 0.00 0.00 37.76 3.86
2 3 3.944476 AGCCTAAACTGCTGACTGG 57.056 52.632 0.00 0.00 37.76 4.00
8 9 1.681166 CCATGCTCAGCCTAAACTGCT 60.681 52.381 0.00 0.00 40.41 4.24
9 10 0.737219 CCATGCTCAGCCTAAACTGC 59.263 55.000 0.00 0.00 37.59 4.40
10 11 0.737219 GCCATGCTCAGCCTAAACTG 59.263 55.000 0.00 0.00 39.12 3.16
11 12 0.394899 GGCCATGCTCAGCCTAAACT 60.395 55.000 0.00 0.00 46.14 2.66
12 13 2.110296 GGCCATGCTCAGCCTAAAC 58.890 57.895 0.00 0.00 46.14 2.01
13 14 4.664062 GGCCATGCTCAGCCTAAA 57.336 55.556 0.00 0.00 46.14 1.85
18 19 2.677524 TTGGTGGCCATGCTCAGC 60.678 61.111 9.72 0.00 31.53 4.26
19 20 2.050350 CCTTGGTGGCCATGCTCAG 61.050 63.158 9.72 0.66 31.53 3.35
20 21 2.036098 CCTTGGTGGCCATGCTCA 59.964 61.111 9.72 2.47 31.53 4.26
29 30 0.179129 GATGAATTGCGCCTTGGTGG 60.179 55.000 4.18 0.00 39.35 4.61
30 31 0.527113 TGATGAATTGCGCCTTGGTG 59.473 50.000 4.18 0.00 0.00 4.17
31 32 0.527565 GTGATGAATTGCGCCTTGGT 59.472 50.000 4.18 0.00 0.00 3.67
32 33 0.527113 TGTGATGAATTGCGCCTTGG 59.473 50.000 4.18 0.00 0.00 3.61
33 34 1.200716 AGTGTGATGAATTGCGCCTTG 59.799 47.619 4.18 0.00 0.00 3.61
34 35 1.470098 GAGTGTGATGAATTGCGCCTT 59.530 47.619 4.18 0.00 0.00 4.35
35 36 1.089920 GAGTGTGATGAATTGCGCCT 58.910 50.000 4.18 0.00 0.00 5.52
36 37 1.063174 GAGAGTGTGATGAATTGCGCC 59.937 52.381 4.18 0.00 0.00 6.53
37 38 1.267235 CGAGAGTGTGATGAATTGCGC 60.267 52.381 0.00 0.00 0.00 6.09
38 39 1.325640 CCGAGAGTGTGATGAATTGCG 59.674 52.381 0.00 0.00 0.00 4.85
39 40 2.606725 CTCCGAGAGTGTGATGAATTGC 59.393 50.000 0.00 0.00 0.00 3.56
40 41 3.193263 CCTCCGAGAGTGTGATGAATTG 58.807 50.000 0.00 0.00 0.00 2.32
41 42 2.419297 GCCTCCGAGAGTGTGATGAATT 60.419 50.000 0.00 0.00 0.00 2.17
42 43 1.137872 GCCTCCGAGAGTGTGATGAAT 59.862 52.381 0.00 0.00 0.00 2.57
43 44 0.532573 GCCTCCGAGAGTGTGATGAA 59.467 55.000 0.00 0.00 0.00 2.57
44 45 1.323271 GGCCTCCGAGAGTGTGATGA 61.323 60.000 0.00 0.00 0.00 2.92
45 46 1.142748 GGCCTCCGAGAGTGTGATG 59.857 63.158 0.00 0.00 0.00 3.07
46 47 0.616111 AAGGCCTCCGAGAGTGTGAT 60.616 55.000 5.23 0.00 0.00 3.06
47 48 1.228894 AAGGCCTCCGAGAGTGTGA 60.229 57.895 5.23 0.00 0.00 3.58
48 49 1.079543 CAAGGCCTCCGAGAGTGTG 60.080 63.158 5.23 0.00 0.00 3.82
49 50 2.286523 CCAAGGCCTCCGAGAGTGT 61.287 63.158 5.23 0.00 0.00 3.55
50 51 1.544825 TTCCAAGGCCTCCGAGAGTG 61.545 60.000 5.23 0.00 0.00 3.51
51 52 0.618968 ATTCCAAGGCCTCCGAGAGT 60.619 55.000 5.23 0.00 0.00 3.24
52 53 0.105778 GATTCCAAGGCCTCCGAGAG 59.894 60.000 5.23 0.00 0.00 3.20
53 54 1.676678 CGATTCCAAGGCCTCCGAGA 61.677 60.000 5.23 0.00 0.00 4.04
54 55 1.227380 CGATTCCAAGGCCTCCGAG 60.227 63.158 5.23 0.00 0.00 4.63
55 56 2.900273 CGATTCCAAGGCCTCCGA 59.100 61.111 5.23 0.54 0.00 4.55
56 57 2.897350 GCGATTCCAAGGCCTCCG 60.897 66.667 5.23 0.00 0.00 4.63
57 58 2.517166 GGCGATTCCAAGGCCTCC 60.517 66.667 5.23 0.00 43.52 4.30
58 59 2.869503 TTCGGCGATTCCAAGGCCTC 62.870 60.000 11.76 0.00 44.68 4.70
59 60 2.478335 TTTCGGCGATTCCAAGGCCT 62.478 55.000 11.76 0.00 44.68 5.19
60 61 2.043980 TTTCGGCGATTCCAAGGCC 61.044 57.895 11.76 0.00 43.42 5.19
61 62 1.136774 GTTTCGGCGATTCCAAGGC 59.863 57.895 11.76 0.00 34.01 4.35
62 63 0.447801 CAGTTTCGGCGATTCCAAGG 59.552 55.000 11.76 0.00 34.01 3.61
63 64 1.128692 GACAGTTTCGGCGATTCCAAG 59.871 52.381 11.76 1.56 34.01 3.61
64 65 1.153353 GACAGTTTCGGCGATTCCAA 58.847 50.000 11.76 0.00 34.01 3.53
65 66 0.672401 GGACAGTTTCGGCGATTCCA 60.672 55.000 11.76 0.00 34.01 3.53
66 67 0.391263 AGGACAGTTTCGGCGATTCC 60.391 55.000 11.76 11.74 0.00 3.01
67 68 1.393883 GAAGGACAGTTTCGGCGATTC 59.606 52.381 11.76 5.03 0.00 2.52
68 69 1.439679 GAAGGACAGTTTCGGCGATT 58.560 50.000 11.76 0.00 0.00 3.34
69 70 0.391263 GGAAGGACAGTTTCGGCGAT 60.391 55.000 11.76 0.00 0.00 4.58
70 71 1.005394 GGAAGGACAGTTTCGGCGA 60.005 57.895 4.99 4.99 0.00 5.54
71 72 1.004918 AGGAAGGACAGTTTCGGCG 60.005 57.895 0.00 0.00 0.00 6.46
72 73 0.321996 AGAGGAAGGACAGTTTCGGC 59.678 55.000 0.00 0.00 0.00 5.54
73 74 1.896465 AGAGAGGAAGGACAGTTTCGG 59.104 52.381 0.00 0.00 0.00 4.30
74 75 2.353208 CCAGAGAGGAAGGACAGTTTCG 60.353 54.545 0.00 0.00 41.22 3.46
75 76 2.614229 GCCAGAGAGGAAGGACAGTTTC 60.614 54.545 0.00 0.00 41.22 2.78
76 77 1.349357 GCCAGAGAGGAAGGACAGTTT 59.651 52.381 0.00 0.00 41.22 2.66
77 78 0.980423 GCCAGAGAGGAAGGACAGTT 59.020 55.000 0.00 0.00 41.22 3.16
78 79 0.907230 GGCCAGAGAGGAAGGACAGT 60.907 60.000 0.00 0.00 41.22 3.55
79 80 0.617249 AGGCCAGAGAGGAAGGACAG 60.617 60.000 5.01 0.00 41.22 3.51
80 81 0.906756 CAGGCCAGAGAGGAAGGACA 60.907 60.000 5.01 0.00 41.22 4.02
81 82 1.904032 CAGGCCAGAGAGGAAGGAC 59.096 63.158 5.01 0.00 41.22 3.85
82 83 1.992277 GCAGGCCAGAGAGGAAGGA 60.992 63.158 5.01 0.00 41.22 3.36
83 84 2.588989 GCAGGCCAGAGAGGAAGG 59.411 66.667 5.01 0.00 41.22 3.46
84 85 2.588989 GGCAGGCCAGAGAGGAAG 59.411 66.667 5.01 0.00 41.22 3.46
85 86 3.393970 CGGCAGGCCAGAGAGGAA 61.394 66.667 5.01 0.00 41.22 3.36
102 103 1.961277 CGATAATGCGGCTCACCCC 60.961 63.158 0.00 0.00 0.00 4.95
103 104 2.607892 GCGATAATGCGGCTCACCC 61.608 63.158 0.00 0.00 0.00 4.61
104 105 2.939022 GCGATAATGCGGCTCACC 59.061 61.111 0.00 0.00 0.00 4.02
110 111 1.167851 ATTGATGGGCGATAATGCGG 58.832 50.000 0.00 0.00 35.06 5.69
111 112 3.002791 AGTATTGATGGGCGATAATGCG 58.997 45.455 0.00 0.00 35.06 4.73
112 113 3.753272 ACAGTATTGATGGGCGATAATGC 59.247 43.478 0.00 0.00 40.81 3.56
113 114 4.091945 CGACAGTATTGATGGGCGATAATG 59.908 45.833 0.00 0.00 42.14 1.90
114 115 4.021456 TCGACAGTATTGATGGGCGATAAT 60.021 41.667 0.00 0.00 0.00 1.28
115 116 3.319689 TCGACAGTATTGATGGGCGATAA 59.680 43.478 0.00 0.00 0.00 1.75
116 117 2.888414 TCGACAGTATTGATGGGCGATA 59.112 45.455 0.00 0.00 0.00 2.92
117 118 1.686587 TCGACAGTATTGATGGGCGAT 59.313 47.619 0.00 0.00 0.00 4.58
118 119 1.107945 TCGACAGTATTGATGGGCGA 58.892 50.000 0.00 0.00 0.00 5.54
119 120 1.209128 GTCGACAGTATTGATGGGCG 58.791 55.000 11.55 0.00 0.00 6.13
120 121 1.209128 CGTCGACAGTATTGATGGGC 58.791 55.000 17.16 0.00 0.00 5.36
121 122 2.193447 CACGTCGACAGTATTGATGGG 58.807 52.381 17.16 0.00 32.47 4.00
122 123 2.193447 CCACGTCGACAGTATTGATGG 58.807 52.381 17.16 7.13 32.47 3.51
123 124 2.598637 CACCACGTCGACAGTATTGATG 59.401 50.000 17.16 0.00 34.22 3.07
124 125 2.876091 CACCACGTCGACAGTATTGAT 58.124 47.619 17.16 0.00 0.00 2.57
125 126 1.667756 GCACCACGTCGACAGTATTGA 60.668 52.381 17.16 0.00 0.00 2.57
126 127 0.713883 GCACCACGTCGACAGTATTG 59.286 55.000 17.16 13.95 0.00 1.90
127 128 0.731514 CGCACCACGTCGACAGTATT 60.732 55.000 17.16 2.36 36.87 1.89
128 129 1.154093 CGCACCACGTCGACAGTAT 60.154 57.895 17.16 3.89 36.87 2.12
129 130 2.253154 CGCACCACGTCGACAGTA 59.747 61.111 17.16 0.00 36.87 2.74
130 131 4.640855 CCGCACCACGTCGACAGT 62.641 66.667 17.16 11.57 41.42 3.55
148 149 0.384230 CCTACATTAATTGCGCGCCG 60.384 55.000 30.77 10.33 0.00 6.46
149 150 0.661020 ACCTACATTAATTGCGCGCC 59.339 50.000 30.77 11.42 0.00 6.53
150 151 2.468532 AACCTACATTAATTGCGCGC 57.531 45.000 27.26 27.26 0.00 6.86
151 152 3.064820 AGGAAACCTACATTAATTGCGCG 59.935 43.478 0.00 0.00 28.47 6.86
152 153 4.351192 CAGGAAACCTACATTAATTGCGC 58.649 43.478 0.00 0.00 29.64 6.09
153 154 4.096382 AGCAGGAAACCTACATTAATTGCG 59.904 41.667 0.00 0.00 33.39 4.85
154 155 5.582689 AGCAGGAAACCTACATTAATTGC 57.417 39.130 0.00 0.00 29.64 3.56
155 156 6.543831 AGCTAGCAGGAAACCTACATTAATTG 59.456 38.462 18.83 0.00 29.64 2.32
156 157 6.663734 AGCTAGCAGGAAACCTACATTAATT 58.336 36.000 18.83 0.00 29.64 1.40
157 158 6.253946 AGCTAGCAGGAAACCTACATTAAT 57.746 37.500 18.83 0.00 29.64 1.40
158 159 5.693769 AGCTAGCAGGAAACCTACATTAA 57.306 39.130 18.83 0.00 29.64 1.40
159 160 5.897824 ACTAGCTAGCAGGAAACCTACATTA 59.102 40.000 20.91 0.00 29.64 1.90
160 161 4.717280 ACTAGCTAGCAGGAAACCTACATT 59.283 41.667 20.91 0.00 29.64 2.71
161 162 4.100189 CACTAGCTAGCAGGAAACCTACAT 59.900 45.833 20.91 0.00 29.64 2.29
162 163 3.447586 CACTAGCTAGCAGGAAACCTACA 59.552 47.826 20.91 0.00 29.64 2.74
163 164 3.447944 ACACTAGCTAGCAGGAAACCTAC 59.552 47.826 20.91 0.00 29.64 3.18
164 165 3.447586 CACACTAGCTAGCAGGAAACCTA 59.552 47.826 20.91 0.00 29.64 3.08
165 166 2.234908 CACACTAGCTAGCAGGAAACCT 59.765 50.000 20.91 0.00 0.00 3.50
166 167 2.622436 CACACTAGCTAGCAGGAAACC 58.378 52.381 20.91 0.00 0.00 3.27
167 168 2.003301 GCACACTAGCTAGCAGGAAAC 58.997 52.381 20.91 0.62 0.00 2.78
168 169 1.066143 GGCACACTAGCTAGCAGGAAA 60.066 52.381 20.91 0.00 34.17 3.13
169 170 0.537188 GGCACACTAGCTAGCAGGAA 59.463 55.000 20.91 0.00 34.17 3.36
170 171 0.614697 TGGCACACTAGCTAGCAGGA 60.615 55.000 20.91 0.21 34.17 3.86
171 172 1.900351 TGGCACACTAGCTAGCAGG 59.100 57.895 20.91 12.70 34.17 4.85
183 184 3.930954 GTGCTTACATGTAGGATGGCACA 60.931 47.826 26.03 12.52 45.19 4.57
184 185 2.614057 GTGCTTACATGTAGGATGGCAC 59.386 50.000 18.42 20.44 41.09 5.01
185 186 2.505407 AGTGCTTACATGTAGGATGGCA 59.495 45.455 18.42 14.68 0.00 4.92
186 187 3.199880 AGTGCTTACATGTAGGATGGC 57.800 47.619 18.42 12.64 0.00 4.40
187 188 6.101650 TCATAGTGCTTACATGTAGGATGG 57.898 41.667 18.42 3.91 0.00 3.51
188 189 7.928167 TCTTTCATAGTGCTTACATGTAGGATG 59.072 37.037 18.42 12.26 0.00 3.51
189 190 7.928706 GTCTTTCATAGTGCTTACATGTAGGAT 59.071 37.037 18.42 6.18 0.00 3.24
190 191 7.093509 TGTCTTTCATAGTGCTTACATGTAGGA 60.094 37.037 18.42 5.89 0.00 2.94
191 192 7.041721 TGTCTTTCATAGTGCTTACATGTAGG 58.958 38.462 10.51 10.51 0.00 3.18
192 193 8.546244 CATGTCTTTCATAGTGCTTACATGTAG 58.454 37.037 5.56 2.17 38.60 2.74
193 194 8.424274 CATGTCTTTCATAGTGCTTACATGTA 57.576 34.615 0.08 0.08 38.60 2.29
194 195 6.881065 ACATGTCTTTCATAGTGCTTACATGT 59.119 34.615 2.69 2.69 46.75 3.21
195 196 7.312657 ACATGTCTTTCATAGTGCTTACATG 57.687 36.000 9.81 9.81 45.22 3.21
196 197 7.712639 CCTACATGTCTTTCATAGTGCTTACAT 59.287 37.037 0.00 0.00 34.67 2.29
197 198 7.041721 CCTACATGTCTTTCATAGTGCTTACA 58.958 38.462 0.00 0.00 34.67 2.41
198 199 6.018669 GCCTACATGTCTTTCATAGTGCTTAC 60.019 42.308 0.00 0.00 34.67 2.34
199 200 6.049149 GCCTACATGTCTTTCATAGTGCTTA 58.951 40.000 0.00 0.00 34.67 3.09
200 201 4.878397 GCCTACATGTCTTTCATAGTGCTT 59.122 41.667 0.00 0.00 34.67 3.91
201 202 4.080919 TGCCTACATGTCTTTCATAGTGCT 60.081 41.667 0.00 0.00 34.67 4.40
202 203 4.191544 TGCCTACATGTCTTTCATAGTGC 58.808 43.478 0.00 0.00 34.67 4.40
203 204 6.932356 AATGCCTACATGTCTTTCATAGTG 57.068 37.500 0.00 0.00 36.36 2.74
204 205 7.663081 CCATAATGCCTACATGTCTTTCATAGT 59.337 37.037 0.00 0.00 36.36 2.12
205 206 7.879677 TCCATAATGCCTACATGTCTTTCATAG 59.120 37.037 0.00 0.00 36.36 2.23
206 207 7.744733 TCCATAATGCCTACATGTCTTTCATA 58.255 34.615 0.00 0.00 36.36 2.15
207 208 6.604171 TCCATAATGCCTACATGTCTTTCAT 58.396 36.000 0.00 0.00 36.36 2.57
208 209 6.000246 TCCATAATGCCTACATGTCTTTCA 58.000 37.500 0.00 0.00 36.36 2.69
209 210 6.767902 TCTTCCATAATGCCTACATGTCTTTC 59.232 38.462 0.00 0.00 36.36 2.62
210 211 6.662755 TCTTCCATAATGCCTACATGTCTTT 58.337 36.000 0.00 0.00 36.36 2.52
211 212 6.252599 TCTTCCATAATGCCTACATGTCTT 57.747 37.500 0.00 0.00 36.36 3.01
212 213 5.894298 TCTTCCATAATGCCTACATGTCT 57.106 39.130 0.00 0.00 36.36 3.41
213 214 5.822519 TGTTCTTCCATAATGCCTACATGTC 59.177 40.000 0.00 0.00 36.36 3.06
214 215 5.754782 TGTTCTTCCATAATGCCTACATGT 58.245 37.500 2.69 2.69 36.36 3.21
225 226 5.147330 AGTGTCGTCATGTTCTTCCATAA 57.853 39.130 0.00 0.00 0.00 1.90
230 231 2.737252 GGGAAGTGTCGTCATGTTCTTC 59.263 50.000 0.00 5.41 0.00 2.87
239 240 0.670854 GGCTGAAGGGAAGTGTCGTC 60.671 60.000 0.00 0.00 0.00 4.20
242 243 0.322008 CAGGGCTGAAGGGAAGTGTC 60.322 60.000 0.00 0.00 0.00 3.67
243 244 1.062488 ACAGGGCTGAAGGGAAGTGT 61.062 55.000 0.00 0.00 0.00 3.55
271 272 4.200874 AGTGTTCACCTCTAGATACTCCG 58.799 47.826 0.00 0.00 0.00 4.63
278 279 3.165875 CAGGGAAGTGTTCACCTCTAGA 58.834 50.000 0.00 0.00 31.94 2.43
281 282 1.059913 CCAGGGAAGTGTTCACCTCT 58.940 55.000 0.00 0.00 31.94 3.69
285 286 2.711542 CCATACCAGGGAAGTGTTCAC 58.288 52.381 0.00 0.00 0.00 3.18
300 302 0.320771 CGCTATCCACCAGCCCATAC 60.321 60.000 0.00 0.00 35.53 2.39
314 316 0.889994 TGGACGGTGTTGTACGCTAT 59.110 50.000 0.00 0.00 0.00 2.97
315 317 0.672889 TTGGACGGTGTTGTACGCTA 59.327 50.000 0.00 0.00 0.00 4.26
316 318 0.877213 GTTGGACGGTGTTGTACGCT 60.877 55.000 0.00 0.00 0.00 5.07
317 319 1.566077 GTTGGACGGTGTTGTACGC 59.434 57.895 0.00 0.00 0.00 4.42
327 329 2.751436 CCATGCCTGGTTGGACGG 60.751 66.667 11.13 0.00 37.79 4.79
351 353 1.443702 TTGATGAGCACGACGGTCG 60.444 57.895 27.33 27.33 45.52 4.79
353 355 0.944311 GTGTTGATGAGCACGACGGT 60.944 55.000 0.00 0.00 0.00 4.83
387 389 1.753470 CATAGCCAGCCCTCTGAGG 59.247 63.158 17.02 17.02 42.95 3.86
393 395 2.349100 GATGCACCATAGCCAGCCCT 62.349 60.000 0.00 0.00 0.00 5.19
401 410 3.738899 GCCCAAAATGTGATGCACCATAG 60.739 47.826 0.00 0.00 32.73 2.23
411 420 0.527113 CATCGCTGCCCAAAATGTGA 59.473 50.000 0.00 0.00 0.00 3.58
414 423 0.527113 TCACATCGCTGCCCAAAATG 59.473 50.000 0.00 0.00 0.00 2.32
415 424 1.477553 ATCACATCGCTGCCCAAAAT 58.522 45.000 0.00 0.00 0.00 1.82
424 433 4.991153 TCTGAAAGACTATCACATCGCT 57.009 40.909 0.00 0.00 38.67 4.93
458 467 1.291184 TGATTCAGCTGTCGCAACGG 61.291 55.000 14.67 0.00 39.10 4.44
459 468 0.094216 CTGATTCAGCTGTCGCAACG 59.906 55.000 14.67 0.00 39.10 4.10
466 475 4.757019 ATCACTCATCTGATTCAGCTGT 57.243 40.909 14.67 0.00 30.73 4.40
469 478 4.451774 GGCTTATCACTCATCTGATTCAGC 59.548 45.833 8.89 0.00 36.19 4.26
486 495 6.018180 GCGCGGCTATTATTTATTAGGCTTAT 60.018 38.462 8.83 0.00 33.60 1.73
487 496 5.292589 GCGCGGCTATTATTTATTAGGCTTA 59.707 40.000 8.83 0.00 33.60 3.09
490 499 3.242641 GGCGCGGCTATTATTTATTAGGC 60.243 47.826 27.05 0.00 0.00 3.93
496 505 1.141645 CGTGGCGCGGCTATTATTTA 58.858 50.000 33.23 7.69 36.85 1.40
515 525 3.314357 GCCATAATTAGGGGACACGAAAC 59.686 47.826 17.44 0.00 0.00 2.78
523 533 8.231007 TCATTAAAATCTGCCATAATTAGGGGA 58.769 33.333 17.44 13.87 0.00 4.81
534 544 5.177326 GCAAACCATCATTAAAATCTGCCA 58.823 37.500 0.00 0.00 0.00 4.92
540 551 4.883006 GGGCATGCAAACCATCATTAAAAT 59.117 37.500 21.36 0.00 29.71 1.82
579 591 9.353999 GATTTGTTGTTGATTAATACCCTCAAC 57.646 33.333 10.58 10.58 45.65 3.18
589 601 5.638657 GCATGCCAGATTTGTTGTTGATTAA 59.361 36.000 6.36 0.00 0.00 1.40
598 610 0.813184 CCTCGCATGCCAGATTTGTT 59.187 50.000 14.45 0.00 0.00 2.83
600 612 0.099968 CACCTCGCATGCCAGATTTG 59.900 55.000 14.45 4.22 0.00 2.32
604 616 3.002583 TCCACCTCGCATGCCAGA 61.003 61.111 14.45 4.43 0.00 3.86
632 644 4.394712 CACCTCACCCCACTCCGC 62.395 72.222 0.00 0.00 0.00 5.54
634 646 2.294078 CCTCACCTCACCCCACTCC 61.294 68.421 0.00 0.00 0.00 3.85
635 647 1.536662 ACCTCACCTCACCCCACTC 60.537 63.158 0.00 0.00 0.00 3.51
636 648 1.843376 CACCTCACCTCACCCCACT 60.843 63.158 0.00 0.00 0.00 4.00
637 649 1.831652 CTCACCTCACCTCACCCCAC 61.832 65.000 0.00 0.00 0.00 4.61
638 650 1.536418 CTCACCTCACCTCACCCCA 60.536 63.158 0.00 0.00 0.00 4.96
643 655 0.542938 CTCACCCTCACCTCACCTCA 60.543 60.000 0.00 0.00 0.00 3.86
645 657 0.543174 GACTCACCCTCACCTCACCT 60.543 60.000 0.00 0.00 0.00 4.00
663 675 1.279496 CCTCCCACTTCCACTCATGA 58.721 55.000 0.00 0.00 0.00 3.07
667 679 1.056660 TTGACCTCCCACTTCCACTC 58.943 55.000 0.00 0.00 0.00 3.51
670 682 1.518367 AGTTTGACCTCCCACTTCCA 58.482 50.000 0.00 0.00 0.00 3.53
680 692 8.685838 TTACATTGCTTAGTTTAGTTTGACCT 57.314 30.769 0.00 0.00 0.00 3.85
684 696 9.485591 CCGTATTACATTGCTTAGTTTAGTTTG 57.514 33.333 0.00 0.00 0.00 2.93
685 697 8.179615 GCCGTATTACATTGCTTAGTTTAGTTT 58.820 33.333 0.00 0.00 0.00 2.66
686 698 7.334921 TGCCGTATTACATTGCTTAGTTTAGTT 59.665 33.333 0.00 0.00 0.00 2.24
687 699 6.819649 TGCCGTATTACATTGCTTAGTTTAGT 59.180 34.615 0.00 0.00 0.00 2.24
688 700 7.223971 TCTGCCGTATTACATTGCTTAGTTTAG 59.776 37.037 0.00 0.00 0.00 1.85
689 701 7.042950 TCTGCCGTATTACATTGCTTAGTTTA 58.957 34.615 0.00 0.00 0.00 2.01
690 702 5.878116 TCTGCCGTATTACATTGCTTAGTTT 59.122 36.000 0.00 0.00 0.00 2.66
691 703 5.424757 TCTGCCGTATTACATTGCTTAGTT 58.575 37.500 0.00 0.00 0.00 2.24
699 711 4.287067 AGGATCCATCTGCCGTATTACATT 59.713 41.667 15.82 0.00 0.00 2.71
701 713 3.239449 AGGATCCATCTGCCGTATTACA 58.761 45.455 15.82 0.00 0.00 2.41
702 714 3.963428 AGGATCCATCTGCCGTATTAC 57.037 47.619 15.82 0.00 0.00 1.89
706 718 2.891580 GAGTAAGGATCCATCTGCCGTA 59.108 50.000 15.82 0.00 0.00 4.02
709 721 4.429854 AAAGAGTAAGGATCCATCTGCC 57.570 45.455 15.82 0.00 0.00 4.85
711 723 7.497249 CCTAACAAAAGAGTAAGGATCCATCTG 59.503 40.741 15.82 3.95 0.00 2.90
758 770 9.391006 TCCTCGCATAGTTTTAGTGAAATTATT 57.609 29.630 0.00 0.00 30.39 1.40
787 799 1.269988 CCGTCGGATGAGCTGATCAAT 60.270 52.381 15.36 0.00 42.53 2.57
857 869 2.128507 GGAGGGGATCGCTCGTTCT 61.129 63.158 9.90 0.00 43.09 3.01
1083 1097 1.617947 GCTCGGGTGAGATTGAGGGT 61.618 60.000 0.00 0.00 45.57 4.34
1141 1155 2.094597 CGCCATCAGCAAAAGGATGAAA 60.095 45.455 0.00 0.00 46.46 2.69
1159 1174 2.420022 ACATAACAACAGCAGAATCGCC 59.580 45.455 0.00 0.00 0.00 5.54
1168 1183 0.247301 GCGCTCGACATAACAACAGC 60.247 55.000 0.00 0.00 0.00 4.40
1269 1284 7.603651 ACAGATCGTAAGTTGATTCAGTTAGT 58.396 34.615 0.00 0.00 39.48 2.24
1312 1327 4.872664 ACCGTCTAGCATAATACAGCTTC 58.127 43.478 0.00 0.00 42.05 3.86
1376 1404 8.970020 TCAGCAAATTTCCATCACATATACTTT 58.030 29.630 0.00 0.00 0.00 2.66
1379 1407 8.408601 AGTTCAGCAAATTTCCATCACATATAC 58.591 33.333 0.00 0.00 0.00 1.47
1446 1477 2.582728 AAACACACAACCATGCACAG 57.417 45.000 0.00 0.00 0.00 3.66
1469 1690 0.417841 AGAACCCCTCTCTAAGGCCA 59.582 55.000 5.01 0.00 44.71 5.36
1478 1699 2.632537 ACAACATACCAGAACCCCTCT 58.367 47.619 0.00 0.00 33.23 3.69
1516 1737 1.578583 CCTTCCCTAAATACCGTGCG 58.421 55.000 0.00 0.00 0.00 5.34
1521 1742 3.298686 AGCTTGCCTTCCCTAAATACC 57.701 47.619 0.00 0.00 0.00 2.73
1611 1839 6.035435 GCTATCACTGTAAGACATCACACAAG 59.965 42.308 0.00 0.00 37.43 3.16
1634 1862 8.970859 AATAGCTCTAACTTGTCAAATATGCT 57.029 30.769 0.00 0.00 0.00 3.79
1641 1869 6.094048 GCCATGAAATAGCTCTAACTTGTCAA 59.906 38.462 0.00 0.00 0.00 3.18
1651 1879 5.933617 TGATGTAAGCCATGAAATAGCTCT 58.066 37.500 0.00 0.00 41.56 4.09
1657 1885 5.362263 GGCAAATGATGTAAGCCATGAAAT 58.638 37.500 0.00 0.00 44.59 2.17
1761 1989 0.250467 TGCTCCTGTGCTCACCTTTC 60.250 55.000 0.00 0.00 0.00 2.62
1765 1993 0.952984 GTCTTGCTCCTGTGCTCACC 60.953 60.000 0.00 0.00 0.00 4.02
1892 2129 4.222810 TGTGTGCTCTACATGGTTATCAGT 59.777 41.667 0.00 0.00 42.24 3.41
2011 2249 1.237285 ATGTTTCGGTGTCAGCCTGC 61.237 55.000 0.00 0.00 0.00 4.85
2140 2382 2.776536 AGTATGCTTCCAAGGAGCAGAT 59.223 45.455 15.08 5.96 42.11 2.90
2174 2416 7.961325 AGCTAAACCCAAACAAATAACAATG 57.039 32.000 0.00 0.00 0.00 2.82
2206 2448 9.098355 CTGTAATTTAAAGTGCAGCATACTCTA 57.902 33.333 18.35 0.00 30.71 2.43
2242 2484 5.745227 ACGGTCTCCAATAATCAAATCACT 58.255 37.500 0.00 0.00 0.00 3.41
2255 2497 2.026641 CGGGAATAGTACGGTCTCCAA 58.973 52.381 8.11 0.00 0.00 3.53
2270 2512 4.522114 TCATCTGAATGCAATAACGGGAA 58.478 39.130 0.00 0.00 32.58 3.97
2275 2517 8.095937 TGATCTGATCATCTGAATGCAATAAC 57.904 34.615 16.06 0.00 33.59 1.89
2314 2556 2.841266 TGTCATCCGGTCCTGGAATTAA 59.159 45.455 0.00 0.00 42.46 1.40
2367 2609 2.354109 ACACATACGTCAGAGCACAG 57.646 50.000 0.00 0.00 0.00 3.66
2774 3024 8.246180 CCGTACTAAGTATGGTCTTAGAAAACA 58.754 37.037 16.84 0.00 45.51 2.83
2846 3096 9.729023 CTACTATTGATGTTCTTACTGAGACTG 57.271 37.037 0.00 0.00 33.02 3.51
2919 3169 6.938030 ACTCCCAAAACAAATCGTGTAATCTA 59.062 34.615 0.00 0.00 40.60 1.98
2930 3180 5.683681 AGATTTTGCACTCCCAAAACAAAT 58.316 33.333 2.59 0.00 44.60 2.32
2943 3193 2.887152 AGGTTCAGGTGAGATTTTGCAC 59.113 45.455 0.00 0.00 0.00 4.57
2969 3219 2.496871 CACAGCCATATGCCCTGAAAAA 59.503 45.455 21.40 0.00 42.71 1.94
2979 3229 1.070376 CGATGTTCGCACAGCCATATG 60.070 52.381 0.00 0.00 35.78 1.78
3042 3292 7.652507 CCAGGTTTCTAATACTCCGTTTAGATC 59.347 40.741 0.00 0.00 35.11 2.75
3148 3398 5.240844 TCATTCATACATACAGACCGACGAT 59.759 40.000 0.00 0.00 0.00 3.73
3229 3484 3.566322 TGTTCTATTCAAACAACCGGGTG 59.434 43.478 20.60 20.60 33.86 4.61
3261 3516 7.502226 ACAGATTTCTTCAACTACATGGACAAA 59.498 33.333 0.00 0.00 0.00 2.83
3263 3518 6.533730 ACAGATTTCTTCAACTACATGGACA 58.466 36.000 0.00 0.00 0.00 4.02
3295 3550 9.412460 AGGCATGTTTCTTTCTTCATTCATATA 57.588 29.630 0.00 0.00 0.00 0.86
3338 3601 5.280164 GGGGAAAAGGAAAAAGCAATCTGAT 60.280 40.000 0.00 0.00 0.00 2.90
3358 3622 2.833582 GATCCGTCTGCGAGGGGA 60.834 66.667 14.35 8.39 41.33 4.81
3387 3651 5.148651 AGTCGGCTAGTAATTCAACAACT 57.851 39.130 0.00 0.00 0.00 3.16
3461 3725 1.259840 GCAAATGGATGGTGCCACCT 61.260 55.000 16.23 0.00 41.56 4.00
3490 3759 0.794981 CTCGCTTCTCCGTTCGTGAG 60.795 60.000 0.00 0.00 0.00 3.51
3491 3760 1.209383 CTCGCTTCTCCGTTCGTGA 59.791 57.895 0.00 0.00 0.00 4.35
3510 3800 3.214328 ACTCTTGAGCCACGATTTTTGT 58.786 40.909 0.00 0.00 0.00 2.83
3524 3814 2.225017 GGATTTGGGGGTGAACTCTTGA 60.225 50.000 0.00 0.00 0.00 3.02
3525 3815 2.171003 GGATTTGGGGGTGAACTCTTG 58.829 52.381 0.00 0.00 0.00 3.02
3573 3864 2.507992 CCGTGAAGAGAGCAGCCG 60.508 66.667 0.00 0.00 0.00 5.52
3574 3865 2.125350 CCCGTGAAGAGAGCAGCC 60.125 66.667 0.00 0.00 0.00 4.85
3576 3867 1.153667 GAGCCCGTGAAGAGAGCAG 60.154 63.158 0.00 0.00 0.00 4.24
3577 3868 2.650116 GGAGCCCGTGAAGAGAGCA 61.650 63.158 0.00 0.00 0.00 4.26
3579 3870 2.726351 GGGGAGCCCGTGAAGAGAG 61.726 68.421 0.00 0.00 36.85 3.20
3580 3871 2.683933 GGGGAGCCCGTGAAGAGA 60.684 66.667 0.00 0.00 36.85 3.10
3581 3872 3.787001 GGGGGAGCCCGTGAAGAG 61.787 72.222 0.00 0.00 46.66 2.85
3600 3931 1.600638 CCCCGGTAGTGGAAGGTTC 59.399 63.158 0.00 0.00 0.00 3.62
3712 4058 2.334946 GGCCATGCGCTTCAAGACA 61.335 57.895 9.73 0.00 37.74 3.41
3728 4074 2.895372 CGTAACTCCGCCCATGGC 60.895 66.667 6.09 0.58 46.75 4.40
3729 4075 1.227263 CTCGTAACTCCGCCCATGG 60.227 63.158 4.14 4.14 0.00 3.66
3730 4076 1.227263 CCTCGTAACTCCGCCCATG 60.227 63.158 0.00 0.00 0.00 3.66
3731 4077 1.684734 ACCTCGTAACTCCGCCCAT 60.685 57.895 0.00 0.00 0.00 4.00
3732 4078 2.283388 ACCTCGTAACTCCGCCCA 60.283 61.111 0.00 0.00 0.00 5.36
3788 4135 2.077413 TGCCATGGAAATTGAAACGC 57.923 45.000 18.40 0.00 0.00 4.84
3797 4144 3.055240 CCTGCCTTAAAATGCCATGGAAA 60.055 43.478 18.40 2.28 0.00 3.13
3856 4212 3.366781 GGAGTTTCTTTCTTGGCATGCTC 60.367 47.826 18.92 8.46 0.00 4.26
3857 4213 2.560105 GGAGTTTCTTTCTTGGCATGCT 59.440 45.455 18.92 0.00 0.00 3.79
3858 4214 2.353109 GGGAGTTTCTTTCTTGGCATGC 60.353 50.000 9.90 9.90 0.00 4.06
3860 4216 2.162681 CGGGAGTTTCTTTCTTGGCAT 58.837 47.619 0.00 0.00 0.00 4.40
3861 4217 1.142060 TCGGGAGTTTCTTTCTTGGCA 59.858 47.619 0.00 0.00 0.00 4.92
3863 4219 1.807142 GCTCGGGAGTTTCTTTCTTGG 59.193 52.381 0.00 0.00 0.00 3.61
3889 4257 1.819903 CCCCGTCTATCTAGCTAAGCC 59.180 57.143 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.