Multiple sequence alignment - TraesCS6B01G202400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G202400 chr6B 100.000 2192 0 0 1 2192 247385975 247383784 0.000000e+00 4048
1 TraesCS6B01G202400 chr6B 89.238 446 37 3 137 572 279386559 279386115 4.110000e-152 547
2 TraesCS6B01G202400 chr6B 96.403 139 5 0 1 139 489225030 489224892 1.690000e-56 230
3 TraesCS6B01G202400 chr3A 92.063 1663 92 20 569 2192 495104196 495102535 0.000000e+00 2303
4 TraesCS6B01G202400 chr3A 88.196 449 38 5 137 572 359724486 359724932 2.490000e-144 521
5 TraesCS6B01G202400 chr4D 91.916 1670 87 20 569 2192 123448422 123446755 0.000000e+00 2292
6 TraesCS6B01G202400 chr4D 92.791 541 38 1 1649 2189 281305639 281306178 0.000000e+00 782
7 TraesCS6B01G202400 chr4A 91.882 1663 95 14 569 2192 67520062 67521723 0.000000e+00 2287
8 TraesCS6B01G202400 chr6D 90.657 1659 110 25 573 2192 153942755 153941103 0.000000e+00 2163
9 TraesCS6B01G202400 chr6D 92.647 544 39 1 1649 2192 32724361 32724903 0.000000e+00 782
10 TraesCS6B01G202400 chr6A 95.760 1085 41 2 569 1648 597252429 597251345 0.000000e+00 1744
11 TraesCS6B01G202400 chr2B 95.496 1088 41 4 569 1648 234540596 234539509 0.000000e+00 1731
12 TraesCS6B01G202400 chr2B 95.221 1088 44 4 569 1648 234501897 234500810 0.000000e+00 1714
13 TraesCS6B01G202400 chr2B 93.015 544 37 1 1649 2192 234539477 234538935 0.000000e+00 793
14 TraesCS6B01G202400 chr2B 82.916 439 56 9 144 573 619168494 619168066 5.710000e-101 377
15 TraesCS6B01G202400 chr2B 97.122 139 4 0 1 139 179057636 179057498 3.640000e-58 235
16 TraesCS6B01G202400 chr2B 97.122 139 4 0 1 139 379149193 379149055 3.640000e-58 235
17 TraesCS6B01G202400 chr2B 97.122 139 4 0 1 139 535994511 535994373 3.640000e-58 235
18 TraesCS6B01G202400 chr2B 79.430 316 44 13 265 572 758476253 758475951 1.030000e-48 204
19 TraesCS6B01G202400 chrUn 95.404 1088 41 4 569 1648 217908232 217909318 0.000000e+00 1724
20 TraesCS6B01G202400 chr3B 95.404 1088 41 4 569 1648 6010202 6009116 0.000000e+00 1724
21 TraesCS6B01G202400 chr3B 95.229 1090 41 4 569 1648 92296170 92295082 0.000000e+00 1714
22 TraesCS6B01G202400 chr3B 92.545 550 40 1 1644 2192 92295057 92294508 0.000000e+00 787
23 TraesCS6B01G202400 chr3B 87.731 432 51 2 142 572 10924016 10923586 9.030000e-139 503
24 TraesCS6B01G202400 chr3B 87.000 400 38 5 185 573 131668830 131668434 2.580000e-119 438
25 TraesCS6B01G202400 chr3B 96.403 139 5 0 1 139 477762733 477762595 1.690000e-56 230
26 TraesCS6B01G202400 chr7D 95.221 1088 44 2 569 1648 307146060 307144973 0.000000e+00 1714
27 TraesCS6B01G202400 chr7D 88.170 448 39 4 137 572 48016046 48015601 2.490000e-144 521
28 TraesCS6B01G202400 chr1A 95.379 1082 41 4 569 1642 278521758 278522838 0.000000e+00 1712
29 TraesCS6B01G202400 chr1A 92.831 544 38 1 1649 2192 278522876 278523418 0.000000e+00 787
30 TraesCS6B01G202400 chr5D 89.237 1180 90 22 1047 2192 395351279 395352455 0.000000e+00 1441
31 TraesCS6B01G202400 chr5D 89.877 405 31 1 137 531 255054108 255054512 1.500000e-141 512
32 TraesCS6B01G202400 chr5D 87.560 418 37 10 158 572 544275473 544275878 9.160000e-129 470
33 TraesCS6B01G202400 chr3D 90.807 446 31 1 137 572 506998499 506998944 2.420000e-164 588
34 TraesCS6B01G202400 chr3D 89.686 446 36 1 137 572 71585536 71585091 5.280000e-156 560
35 TraesCS6B01G202400 chr3D 88.789 446 38 6 137 572 2077151 2076708 8.910000e-149 536
36 TraesCS6B01G202400 chr3D 88.725 408 31 5 179 573 546505444 546505039 3.270000e-133 484
37 TraesCS6B01G202400 chr7B 90.200 449 30 7 137 573 269103745 269103299 6.790000e-160 573
38 TraesCS6B01G202400 chr7B 95.683 139 6 0 1 139 207965097 207964959 7.880000e-55 224
39 TraesCS6B01G202400 chr2A 86.197 355 36 6 229 572 300915344 300914992 2.660000e-99 372
40 TraesCS6B01G202400 chr2A 97.122 139 4 0 1 139 395186741 395186603 3.640000e-58 235
41 TraesCS6B01G202400 chr2A 96.403 139 5 0 1 139 405984651 405984789 1.690000e-56 230
42 TraesCS6B01G202400 chr2D 82.370 346 48 5 236 572 2331813 2332154 2.750000e-74 289
43 TraesCS6B01G202400 chr5B 96.403 139 5 0 1 139 256325567 256325705 1.690000e-56 230


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G202400 chr6B 247383784 247385975 2191 True 4048.0 4048 100.0000 1 2192 1 chr6B.!!$R1 2191
1 TraesCS6B01G202400 chr3A 495102535 495104196 1661 True 2303.0 2303 92.0630 569 2192 1 chr3A.!!$R1 1623
2 TraesCS6B01G202400 chr4D 123446755 123448422 1667 True 2292.0 2292 91.9160 569 2192 1 chr4D.!!$R1 1623
3 TraesCS6B01G202400 chr4D 281305639 281306178 539 False 782.0 782 92.7910 1649 2189 1 chr4D.!!$F1 540
4 TraesCS6B01G202400 chr4A 67520062 67521723 1661 False 2287.0 2287 91.8820 569 2192 1 chr4A.!!$F1 1623
5 TraesCS6B01G202400 chr6D 153941103 153942755 1652 True 2163.0 2163 90.6570 573 2192 1 chr6D.!!$R1 1619
6 TraesCS6B01G202400 chr6D 32724361 32724903 542 False 782.0 782 92.6470 1649 2192 1 chr6D.!!$F1 543
7 TraesCS6B01G202400 chr6A 597251345 597252429 1084 True 1744.0 1744 95.7600 569 1648 1 chr6A.!!$R1 1079
8 TraesCS6B01G202400 chr2B 234500810 234501897 1087 True 1714.0 1714 95.2210 569 1648 1 chr2B.!!$R2 1079
9 TraesCS6B01G202400 chr2B 234538935 234540596 1661 True 1262.0 1731 94.2555 569 2192 2 chr2B.!!$R7 1623
10 TraesCS6B01G202400 chrUn 217908232 217909318 1086 False 1724.0 1724 95.4040 569 1648 1 chrUn.!!$F1 1079
11 TraesCS6B01G202400 chr3B 6009116 6010202 1086 True 1724.0 1724 95.4040 569 1648 1 chr3B.!!$R1 1079
12 TraesCS6B01G202400 chr3B 92294508 92296170 1662 True 1250.5 1714 93.8870 569 2192 2 chr3B.!!$R5 1623
13 TraesCS6B01G202400 chr7D 307144973 307146060 1087 True 1714.0 1714 95.2210 569 1648 1 chr7D.!!$R2 1079
14 TraesCS6B01G202400 chr1A 278521758 278523418 1660 False 1249.5 1712 94.1050 569 2192 2 chr1A.!!$F1 1623
15 TraesCS6B01G202400 chr5D 395351279 395352455 1176 False 1441.0 1441 89.2370 1047 2192 1 chr5D.!!$F2 1145

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
854 860 0.110486 ACCTGCATCGAAAAGGTGGT 59.89 50.0 14.3 4.71 42.78 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2152 2201 0.460284 CTCGTGGTTCTTATGCCGCT 60.46 55.0 0.0 0.0 33.41 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.504596 GGCGTGGATCATGGCCCA 62.505 66.667 0.00 3.33 39.56 5.36
18 19 2.903855 GCGTGGATCATGGCCCAG 60.904 66.667 0.00 0.00 32.28 4.45
19 20 2.203252 CGTGGATCATGGCCCAGG 60.203 66.667 0.00 9.19 32.28 4.45
20 21 2.520260 GTGGATCATGGCCCAGGC 60.520 66.667 0.00 0.00 41.06 4.85
21 22 4.193893 TGGATCATGGCCCAGGCG 62.194 66.667 0.00 0.00 43.06 5.52
22 23 3.877450 GGATCATGGCCCAGGCGA 61.877 66.667 0.00 0.00 43.06 5.54
23 24 2.192979 GATCATGGCCCAGGCGAA 59.807 61.111 0.00 0.00 43.06 4.70
24 25 1.228367 GATCATGGCCCAGGCGAAT 60.228 57.895 0.00 0.00 43.06 3.34
25 26 1.228367 ATCATGGCCCAGGCGAATC 60.228 57.895 0.00 0.00 43.06 2.52
26 27 1.713005 ATCATGGCCCAGGCGAATCT 61.713 55.000 0.00 0.00 43.06 2.40
27 28 1.895707 CATGGCCCAGGCGAATCTC 60.896 63.158 0.00 0.00 43.06 2.75
28 29 3.125376 ATGGCCCAGGCGAATCTCC 62.125 63.158 0.00 0.00 43.06 3.71
29 30 4.918201 GGCCCAGGCGAATCTCCG 62.918 72.222 1.86 0.00 43.06 4.63
30 31 4.918201 GCCCAGGCGAATCTCCGG 62.918 72.222 0.00 0.00 0.00 5.14
70 71 4.785453 CGGGGAAGCTCCTGCACC 62.785 72.222 0.00 0.00 42.74 5.01
71 72 3.650950 GGGGAAGCTCCTGCACCA 61.651 66.667 0.00 0.00 42.74 4.17
72 73 2.045536 GGGAAGCTCCTGCACCAG 60.046 66.667 0.00 0.00 42.74 4.00
95 96 3.597728 GGGTAGGCGAGCGGAGAG 61.598 72.222 0.00 0.00 0.00 3.20
96 97 3.597728 GGTAGGCGAGCGGAGAGG 61.598 72.222 0.00 0.00 0.00 3.69
97 98 4.273257 GTAGGCGAGCGGAGAGGC 62.273 72.222 0.00 0.00 0.00 4.70
107 108 3.072476 GGAGAGGCTCCTGCACAA 58.928 61.111 11.71 0.00 46.41 3.33
108 109 1.078567 GGAGAGGCTCCTGCACAAG 60.079 63.158 11.71 0.00 46.41 3.16
109 110 1.548357 GGAGAGGCTCCTGCACAAGA 61.548 60.000 11.71 0.00 46.41 3.02
110 111 0.390998 GAGAGGCTCCTGCACAAGAC 60.391 60.000 11.71 0.00 41.91 3.01
111 112 1.739562 GAGGCTCCTGCACAAGACG 60.740 63.158 2.15 0.00 41.91 4.18
112 113 2.743928 GGCTCCTGCACAAGACGG 60.744 66.667 0.00 0.00 41.91 4.79
113 114 2.343758 GCTCCTGCACAAGACGGA 59.656 61.111 0.00 0.00 39.41 4.69
114 115 1.739562 GCTCCTGCACAAGACGGAG 60.740 63.158 12.01 12.01 44.58 4.63
115 116 1.079543 CTCCTGCACAAGACGGAGG 60.080 63.158 9.11 0.00 42.99 4.30
116 117 2.046892 CCTGCACAAGACGGAGGG 60.047 66.667 0.00 0.00 38.27 4.30
117 118 2.583441 CCTGCACAAGACGGAGGGA 61.583 63.158 0.00 0.00 38.27 4.20
118 119 1.079543 CTGCACAAGACGGAGGGAG 60.080 63.158 0.00 0.00 0.00 4.30
119 120 2.266055 GCACAAGACGGAGGGAGG 59.734 66.667 0.00 0.00 0.00 4.30
120 121 2.266055 CACAAGACGGAGGGAGGC 59.734 66.667 0.00 0.00 0.00 4.70
121 122 3.382832 ACAAGACGGAGGGAGGCG 61.383 66.667 0.00 0.00 0.00 5.52
122 123 3.382832 CAAGACGGAGGGAGGCGT 61.383 66.667 0.00 0.00 0.00 5.68
123 124 3.382832 AAGACGGAGGGAGGCGTG 61.383 66.667 0.00 0.00 0.00 5.34
141 142 4.785453 CGGGGAGGCTCTGGCAAC 62.785 72.222 15.23 0.00 40.87 4.17
164 165 3.300711 GGTGCACACCGAAAGTACT 57.699 52.632 20.43 0.00 42.29 2.73
165 166 2.443887 GGTGCACACCGAAAGTACTA 57.556 50.000 20.43 0.00 42.29 1.82
166 167 2.064014 GGTGCACACCGAAAGTACTAC 58.936 52.381 20.43 0.00 42.29 2.73
167 168 2.288640 GGTGCACACCGAAAGTACTACT 60.289 50.000 20.43 0.00 42.29 2.57
168 169 3.057315 GGTGCACACCGAAAGTACTACTA 60.057 47.826 20.43 0.00 42.29 1.82
169 170 4.549458 GTGCACACCGAAAGTACTACTAA 58.451 43.478 13.17 0.00 0.00 2.24
170 171 5.166398 GTGCACACCGAAAGTACTACTAAT 58.834 41.667 13.17 0.00 0.00 1.73
171 172 5.287992 GTGCACACCGAAAGTACTACTAATC 59.712 44.000 13.17 0.00 0.00 1.75
172 173 4.802563 GCACACCGAAAGTACTACTAATCC 59.197 45.833 0.00 0.00 0.00 3.01
173 174 5.622914 GCACACCGAAAGTACTACTAATCCA 60.623 44.000 0.00 0.00 0.00 3.41
174 175 6.392354 CACACCGAAAGTACTACTAATCCAA 58.608 40.000 0.00 0.00 0.00 3.53
175 176 6.869913 CACACCGAAAGTACTACTAATCCAAA 59.130 38.462 0.00 0.00 0.00 3.28
176 177 6.870439 ACACCGAAAGTACTACTAATCCAAAC 59.130 38.462 0.00 0.00 0.00 2.93
177 178 7.095270 CACCGAAAGTACTACTAATCCAAACT 58.905 38.462 0.00 0.00 0.00 2.66
178 179 8.246180 CACCGAAAGTACTACTAATCCAAACTA 58.754 37.037 0.00 0.00 0.00 2.24
179 180 8.465201 ACCGAAAGTACTACTAATCCAAACTAG 58.535 37.037 0.00 0.00 0.00 2.57
180 181 8.680903 CCGAAAGTACTACTAATCCAAACTAGA 58.319 37.037 0.00 0.00 0.00 2.43
206 207 8.752766 TCAAGTTTGGATTAGTAGTACTTTCG 57.247 34.615 8.40 0.00 0.00 3.46
207 208 8.579006 TCAAGTTTGGATTAGTAGTACTTTCGA 58.421 33.333 8.40 1.23 0.00 3.71
208 209 8.645487 CAAGTTTGGATTAGTAGTACTTTCGAC 58.355 37.037 8.40 6.43 0.00 4.20
209 210 7.889469 AGTTTGGATTAGTAGTACTTTCGACA 58.111 34.615 8.40 0.00 0.00 4.35
210 211 8.529476 AGTTTGGATTAGTAGTACTTTCGACAT 58.471 33.333 8.40 0.00 0.00 3.06
211 212 8.592998 GTTTGGATTAGTAGTACTTTCGACATG 58.407 37.037 8.40 0.00 0.00 3.21
212 213 6.270815 TGGATTAGTAGTACTTTCGACATGC 58.729 40.000 8.40 0.00 0.00 4.06
213 214 6.127563 TGGATTAGTAGTACTTTCGACATGCA 60.128 38.462 8.40 0.00 0.00 3.96
214 215 6.198591 GGATTAGTAGTACTTTCGACATGCAC 59.801 42.308 8.40 0.00 0.00 4.57
215 216 3.846360 AGTAGTACTTTCGACATGCACC 58.154 45.455 0.00 0.00 0.00 5.01
216 217 2.831685 AGTACTTTCGACATGCACCA 57.168 45.000 0.00 0.00 0.00 4.17
217 218 2.413837 AGTACTTTCGACATGCACCAC 58.586 47.619 0.00 0.00 0.00 4.16
218 219 2.139917 GTACTTTCGACATGCACCACA 58.860 47.619 0.00 0.00 0.00 4.17
219 220 1.896220 ACTTTCGACATGCACCACAT 58.104 45.000 0.00 0.00 40.66 3.21
226 227 4.525467 ATGCACCACATGTTGCCT 57.475 50.000 17.65 7.18 37.70 4.75
227 228 2.269978 ATGCACCACATGTTGCCTC 58.730 52.632 17.65 0.00 37.70 4.70
228 229 1.252904 ATGCACCACATGTTGCCTCC 61.253 55.000 17.65 0.00 37.70 4.30
229 230 1.902918 GCACCACATGTTGCCTCCA 60.903 57.895 10.82 0.00 0.00 3.86
230 231 1.959085 CACCACATGTTGCCTCCAC 59.041 57.895 0.00 0.00 0.00 4.02
231 232 1.228552 ACCACATGTTGCCTCCACC 60.229 57.895 0.00 0.00 0.00 4.61
232 233 1.075482 CCACATGTTGCCTCCACCT 59.925 57.895 0.00 0.00 0.00 4.00
233 234 1.246056 CCACATGTTGCCTCCACCTG 61.246 60.000 0.00 0.00 0.00 4.00
234 235 0.250858 CACATGTTGCCTCCACCTGA 60.251 55.000 0.00 0.00 0.00 3.86
235 236 0.478072 ACATGTTGCCTCCACCTGAA 59.522 50.000 0.00 0.00 0.00 3.02
236 237 1.076024 ACATGTTGCCTCCACCTGAAT 59.924 47.619 0.00 0.00 0.00 2.57
237 238 1.747355 CATGTTGCCTCCACCTGAATC 59.253 52.381 0.00 0.00 0.00 2.52
238 239 1.067295 TGTTGCCTCCACCTGAATCT 58.933 50.000 0.00 0.00 0.00 2.40
239 240 2.265367 TGTTGCCTCCACCTGAATCTA 58.735 47.619 0.00 0.00 0.00 1.98
240 241 2.642311 TGTTGCCTCCACCTGAATCTAA 59.358 45.455 0.00 0.00 0.00 2.10
241 242 3.266772 TGTTGCCTCCACCTGAATCTAAT 59.733 43.478 0.00 0.00 0.00 1.73
242 243 3.845781 TGCCTCCACCTGAATCTAATC 57.154 47.619 0.00 0.00 0.00 1.75
243 244 3.387962 TGCCTCCACCTGAATCTAATCT 58.612 45.455 0.00 0.00 0.00 2.40
244 245 3.135348 TGCCTCCACCTGAATCTAATCTG 59.865 47.826 0.00 0.00 0.00 2.90
245 246 3.737850 CCTCCACCTGAATCTAATCTGC 58.262 50.000 0.00 0.00 0.00 4.26
246 247 3.135348 CCTCCACCTGAATCTAATCTGCA 59.865 47.826 0.00 0.00 0.00 4.41
247 248 4.202440 CCTCCACCTGAATCTAATCTGCAT 60.202 45.833 0.00 0.00 0.00 3.96
248 249 5.374921 CTCCACCTGAATCTAATCTGCATT 58.625 41.667 0.00 0.00 0.00 3.56
249 250 5.371526 TCCACCTGAATCTAATCTGCATTC 58.628 41.667 0.00 0.00 0.00 2.67
250 251 5.104402 TCCACCTGAATCTAATCTGCATTCA 60.104 40.000 0.00 0.00 35.66 2.57
251 252 5.768662 CCACCTGAATCTAATCTGCATTCAT 59.231 40.000 0.00 0.00 36.26 2.57
252 253 6.264744 CCACCTGAATCTAATCTGCATTCATT 59.735 38.462 0.00 0.00 36.26 2.57
253 254 7.201884 CCACCTGAATCTAATCTGCATTCATTT 60.202 37.037 0.00 0.00 36.26 2.32
254 255 8.843262 CACCTGAATCTAATCTGCATTCATTTA 58.157 33.333 0.00 0.00 36.26 1.40
255 256 9.412460 ACCTGAATCTAATCTGCATTCATTTAA 57.588 29.630 0.00 0.00 36.26 1.52
256 257 9.674824 CCTGAATCTAATCTGCATTCATTTAAC 57.325 33.333 0.00 0.00 36.26 2.01
257 258 9.674824 CTGAATCTAATCTGCATTCATTTAACC 57.325 33.333 0.00 0.00 36.26 2.85
258 259 8.632679 TGAATCTAATCTGCATTCATTTAACCC 58.367 33.333 0.00 0.00 32.72 4.11
259 260 8.537728 AATCTAATCTGCATTCATTTAACCCA 57.462 30.769 0.00 0.00 0.00 4.51
260 261 7.333528 TCTAATCTGCATTCATTTAACCCAC 57.666 36.000 0.00 0.00 0.00 4.61
261 262 7.118723 TCTAATCTGCATTCATTTAACCCACT 58.881 34.615 0.00 0.00 0.00 4.00
262 263 5.587388 ATCTGCATTCATTTAACCCACTG 57.413 39.130 0.00 0.00 0.00 3.66
263 264 4.406456 TCTGCATTCATTTAACCCACTGT 58.594 39.130 0.00 0.00 0.00 3.55
264 265 4.832266 TCTGCATTCATTTAACCCACTGTT 59.168 37.500 0.00 0.00 41.11 3.16
265 266 6.007076 TCTGCATTCATTTAACCCACTGTTA 58.993 36.000 0.00 0.00 38.42 2.41
266 267 6.663093 TCTGCATTCATTTAACCCACTGTTAT 59.337 34.615 0.00 0.00 39.14 1.89
267 268 7.831690 TCTGCATTCATTTAACCCACTGTTATA 59.168 33.333 0.00 0.00 39.14 0.98
268 269 8.532186 TGCATTCATTTAACCCACTGTTATAT 57.468 30.769 0.00 0.00 39.14 0.86
269 270 9.634021 TGCATTCATTTAACCCACTGTTATATA 57.366 29.630 0.00 0.00 39.14 0.86
330 331 9.962783 AAAGTACTGTATATAAAACCTAGAGCG 57.037 33.333 0.00 0.00 0.00 5.03
331 332 8.915057 AGTACTGTATATAAAACCTAGAGCGA 57.085 34.615 0.00 0.00 0.00 4.93
332 333 9.347240 AGTACTGTATATAAAACCTAGAGCGAA 57.653 33.333 0.00 0.00 0.00 4.70
333 334 9.956720 GTACTGTATATAAAACCTAGAGCGAAA 57.043 33.333 0.00 0.00 0.00 3.46
341 342 5.803020 AAACCTAGAGCGAAAATAAGCTG 57.197 39.130 0.00 0.00 44.69 4.24
342 343 3.198872 ACCTAGAGCGAAAATAAGCTGC 58.801 45.455 0.00 0.00 44.69 5.25
343 344 3.198068 CCTAGAGCGAAAATAAGCTGCA 58.802 45.455 1.02 0.00 44.69 4.41
344 345 3.812053 CCTAGAGCGAAAATAAGCTGCAT 59.188 43.478 1.02 0.00 44.69 3.96
345 346 4.274459 CCTAGAGCGAAAATAAGCTGCATT 59.726 41.667 1.02 0.00 44.69 3.56
346 347 4.708726 AGAGCGAAAATAAGCTGCATTT 57.291 36.364 1.02 0.00 44.69 2.32
347 348 5.064441 AGAGCGAAAATAAGCTGCATTTT 57.936 34.783 15.57 15.57 44.69 1.82
348 349 5.098211 AGAGCGAAAATAAGCTGCATTTTC 58.902 37.500 24.09 24.09 44.69 2.29
349 350 4.808558 AGCGAAAATAAGCTGCATTTTCA 58.191 34.783 28.62 0.00 46.00 2.69
350 351 5.229423 AGCGAAAATAAGCTGCATTTTCAA 58.771 33.333 28.62 0.00 46.00 2.69
351 352 5.695816 AGCGAAAATAAGCTGCATTTTCAAA 59.304 32.000 28.62 0.00 46.00 2.69
352 353 6.202570 AGCGAAAATAAGCTGCATTTTCAAAA 59.797 30.769 28.62 0.00 46.00 2.44
353 354 6.850317 GCGAAAATAAGCTGCATTTTCAAAAA 59.150 30.769 28.62 0.00 46.00 1.94
354 355 7.534918 GCGAAAATAAGCTGCATTTTCAAAAAT 59.465 29.630 28.62 8.66 46.00 1.82
359 360 6.790285 AAGCTGCATTTTCAAAAATACAGG 57.210 33.333 21.46 9.96 44.38 4.00
360 361 6.100404 AGCTGCATTTTCAAAAATACAGGA 57.900 33.333 21.46 5.00 44.38 3.86
361 362 6.523840 AGCTGCATTTTCAAAAATACAGGAA 58.476 32.000 21.46 0.00 44.38 3.36
362 363 6.991531 AGCTGCATTTTCAAAAATACAGGAAA 59.008 30.769 21.46 0.00 44.38 3.13
363 364 7.498570 AGCTGCATTTTCAAAAATACAGGAAAA 59.501 29.630 21.46 0.00 44.38 2.29
364 365 7.799914 GCTGCATTTTCAAAAATACAGGAAAAG 59.200 33.333 21.46 5.30 44.38 2.27
365 366 8.729805 TGCATTTTCAAAAATACAGGAAAAGT 57.270 26.923 0.00 0.00 41.06 2.66
366 367 9.171877 TGCATTTTCAAAAATACAGGAAAAGTT 57.828 25.926 0.00 0.00 41.06 2.66
370 371 9.877178 TTTTCAAAAATACAGGAAAAGTTAGCA 57.123 25.926 0.00 0.00 35.13 3.49
371 372 9.528018 TTTCAAAAATACAGGAAAAGTTAGCAG 57.472 29.630 0.00 0.00 0.00 4.24
372 373 7.145323 TCAAAAATACAGGAAAAGTTAGCAGC 58.855 34.615 0.00 0.00 0.00 5.25
373 374 6.648879 AAAATACAGGAAAAGTTAGCAGCA 57.351 33.333 0.00 0.00 0.00 4.41
374 375 6.648879 AAATACAGGAAAAGTTAGCAGCAA 57.351 33.333 0.00 0.00 0.00 3.91
375 376 3.990318 ACAGGAAAAGTTAGCAGCAAC 57.010 42.857 0.00 0.00 0.00 4.17
376 377 2.290641 ACAGGAAAAGTTAGCAGCAACG 59.709 45.455 0.00 0.00 33.50 4.10
377 378 2.290641 CAGGAAAAGTTAGCAGCAACGT 59.709 45.455 0.00 0.00 33.50 3.99
378 379 2.949644 AGGAAAAGTTAGCAGCAACGTT 59.050 40.909 0.00 0.00 32.54 3.99
379 380 3.380320 AGGAAAAGTTAGCAGCAACGTTT 59.620 39.130 15.79 15.79 40.97 3.60
380 381 4.109766 GGAAAAGTTAGCAGCAACGTTTT 58.890 39.130 16.45 14.18 39.25 2.43
381 382 4.565166 GGAAAAGTTAGCAGCAACGTTTTT 59.435 37.500 16.45 11.74 39.25 1.94
382 383 5.276207 GGAAAAGTTAGCAGCAACGTTTTTC 60.276 40.000 16.45 16.49 39.25 2.29
383 384 4.364415 AAGTTAGCAGCAACGTTTTTCA 57.636 36.364 0.00 0.00 33.50 2.69
384 385 4.364415 AGTTAGCAGCAACGTTTTTCAA 57.636 36.364 0.00 0.00 33.50 2.69
385 386 4.739195 AGTTAGCAGCAACGTTTTTCAAA 58.261 34.783 0.00 0.00 33.50 2.69
386 387 5.164954 AGTTAGCAGCAACGTTTTTCAAAA 58.835 33.333 0.00 0.00 33.50 2.44
387 388 5.288472 AGTTAGCAGCAACGTTTTTCAAAAG 59.712 36.000 0.00 0.00 33.50 2.27
388 389 3.843999 AGCAGCAACGTTTTTCAAAAGA 58.156 36.364 0.00 0.00 0.00 2.52
389 390 4.241681 AGCAGCAACGTTTTTCAAAAGAA 58.758 34.783 0.00 0.00 0.00 2.52
390 391 4.688413 AGCAGCAACGTTTTTCAAAAGAAA 59.312 33.333 0.00 0.00 0.00 2.52
391 392 4.781026 GCAGCAACGTTTTTCAAAAGAAAC 59.219 37.500 0.00 0.00 33.53 2.78
399 400 5.714272 GTTTTTCAAAAGAAACGCTACTGC 58.286 37.500 0.00 0.00 0.00 4.40
400 401 4.893424 TTTCAAAAGAAACGCTACTGCT 57.107 36.364 0.00 0.00 36.97 4.24
401 402 5.994887 TTTCAAAAGAAACGCTACTGCTA 57.005 34.783 0.00 0.00 36.97 3.49
402 403 4.985044 TCAAAAGAAACGCTACTGCTAC 57.015 40.909 0.00 0.00 36.97 3.58
403 404 4.628074 TCAAAAGAAACGCTACTGCTACT 58.372 39.130 0.00 0.00 36.97 2.57
404 405 5.054477 TCAAAAGAAACGCTACTGCTACTT 58.946 37.500 0.00 0.00 36.97 2.24
405 406 6.218019 TCAAAAGAAACGCTACTGCTACTTA 58.782 36.000 0.00 0.00 36.97 2.24
406 407 6.145048 TCAAAAGAAACGCTACTGCTACTTAC 59.855 38.462 0.00 0.00 36.97 2.34
407 408 5.388408 AAGAAACGCTACTGCTACTTACT 57.612 39.130 0.00 0.00 36.97 2.24
408 409 6.506500 AAGAAACGCTACTGCTACTTACTA 57.493 37.500 0.00 0.00 36.97 1.82
409 410 6.696441 AGAAACGCTACTGCTACTTACTAT 57.304 37.500 0.00 0.00 36.97 2.12
410 411 7.098074 AGAAACGCTACTGCTACTTACTATT 57.902 36.000 0.00 0.00 36.97 1.73
411 412 8.218338 AGAAACGCTACTGCTACTTACTATTA 57.782 34.615 0.00 0.00 36.97 0.98
412 413 8.848182 AGAAACGCTACTGCTACTTACTATTAT 58.152 33.333 0.00 0.00 36.97 1.28
413 414 9.116054 GAAACGCTACTGCTACTTACTATTATC 57.884 37.037 0.00 0.00 36.97 1.75
414 415 7.741027 ACGCTACTGCTACTTACTATTATCA 57.259 36.000 0.00 0.00 36.97 2.15
415 416 7.808672 ACGCTACTGCTACTTACTATTATCAG 58.191 38.462 0.00 0.00 36.97 2.90
416 417 7.444792 ACGCTACTGCTACTTACTATTATCAGT 59.555 37.037 0.00 0.00 37.34 3.41
417 418 8.933807 CGCTACTGCTACTTACTATTATCAGTA 58.066 37.037 0.00 0.00 35.48 2.74
425 426 9.332301 CTACTTACTATTATCAGTAGCGCTTTC 57.668 37.037 18.68 9.96 34.05 2.62
426 427 7.942990 ACTTACTATTATCAGTAGCGCTTTCT 58.057 34.615 18.68 12.44 32.74 2.52
427 428 7.863375 ACTTACTATTATCAGTAGCGCTTTCTG 59.137 37.037 25.90 25.90 32.74 3.02
428 429 4.985409 ACTATTATCAGTAGCGCTTTCTGC 59.015 41.667 26.57 10.96 38.57 4.26
429 430 3.526931 TTATCAGTAGCGCTTTCTGCT 57.473 42.857 26.57 22.14 46.29 4.24
430 431 4.649088 TTATCAGTAGCGCTTTCTGCTA 57.351 40.909 26.57 21.38 43.71 3.49
446 447 1.922570 GCTACAAAGCGCTACTGCTA 58.077 50.000 12.05 6.04 46.60 3.49
447 448 2.268298 GCTACAAAGCGCTACTGCTAA 58.732 47.619 12.05 0.10 46.60 3.09
448 449 2.029365 GCTACAAAGCGCTACTGCTAAC 59.971 50.000 12.05 0.00 46.60 2.34
449 450 2.457366 ACAAAGCGCTACTGCTAACT 57.543 45.000 12.05 0.00 46.60 2.24
450 451 3.587797 ACAAAGCGCTACTGCTAACTA 57.412 42.857 12.05 0.00 46.60 2.24
451 452 3.512680 ACAAAGCGCTACTGCTAACTAG 58.487 45.455 12.05 0.00 46.60 2.57
452 453 2.860735 CAAAGCGCTACTGCTAACTAGG 59.139 50.000 12.05 0.00 46.60 3.02
453 454 1.765230 AGCGCTACTGCTAACTAGGT 58.235 50.000 8.99 0.00 45.14 3.08
454 455 2.928334 AGCGCTACTGCTAACTAGGTA 58.072 47.619 8.99 0.00 45.14 3.08
455 456 3.488363 AGCGCTACTGCTAACTAGGTAT 58.512 45.455 8.99 0.00 45.14 2.73
456 457 4.649692 AGCGCTACTGCTAACTAGGTATA 58.350 43.478 8.99 0.00 45.14 1.47
457 458 5.068636 AGCGCTACTGCTAACTAGGTATAA 58.931 41.667 8.99 0.00 45.14 0.98
458 459 5.533903 AGCGCTACTGCTAACTAGGTATAAA 59.466 40.000 8.99 0.00 45.14 1.40
459 460 6.040166 AGCGCTACTGCTAACTAGGTATAAAA 59.960 38.462 8.99 0.00 45.14 1.52
460 461 6.143598 GCGCTACTGCTAACTAGGTATAAAAC 59.856 42.308 0.00 0.00 36.97 2.43
461 462 7.198390 CGCTACTGCTAACTAGGTATAAAACA 58.802 38.462 0.00 0.00 36.97 2.83
462 463 7.703621 CGCTACTGCTAACTAGGTATAAAACAA 59.296 37.037 0.00 0.00 36.97 2.83
463 464 9.032420 GCTACTGCTAACTAGGTATAAAACAAG 57.968 37.037 0.00 0.00 36.03 3.16
464 465 7.845066 ACTGCTAACTAGGTATAAAACAAGC 57.155 36.000 0.00 0.00 0.00 4.01
465 466 6.534079 ACTGCTAACTAGGTATAAAACAAGCG 59.466 38.462 0.00 0.00 0.00 4.68
466 467 6.632909 TGCTAACTAGGTATAAAACAAGCGA 58.367 36.000 0.00 0.00 0.00 4.93
467 468 6.755141 TGCTAACTAGGTATAAAACAAGCGAG 59.245 38.462 0.00 0.00 0.00 5.03
468 469 6.292221 GCTAACTAGGTATAAAACAAGCGAGC 60.292 42.308 0.00 0.00 0.00 5.03
469 470 4.110482 ACTAGGTATAAAACAAGCGAGCG 58.890 43.478 0.00 0.00 0.00 5.03
470 471 1.664151 AGGTATAAAACAAGCGAGCGC 59.336 47.619 6.78 6.78 42.33 5.92
498 499 5.793030 CTACCAGTTAGCTATAGTGCCTT 57.207 43.478 0.84 0.00 0.00 4.35
499 500 6.896021 CTACCAGTTAGCTATAGTGCCTTA 57.104 41.667 0.84 0.00 0.00 2.69
500 501 5.793030 ACCAGTTAGCTATAGTGCCTTAG 57.207 43.478 0.84 0.00 0.00 2.18
501 502 5.209659 ACCAGTTAGCTATAGTGCCTTAGT 58.790 41.667 0.84 0.00 0.00 2.24
502 503 5.069251 ACCAGTTAGCTATAGTGCCTTAGTG 59.931 44.000 0.84 0.00 0.00 2.74
503 504 5.509840 CCAGTTAGCTATAGTGCCTTAGTGG 60.510 48.000 0.84 3.51 39.35 4.00
504 505 5.069251 CAGTTAGCTATAGTGCCTTAGTGGT 59.931 44.000 0.84 0.00 38.35 4.16
505 506 6.264744 CAGTTAGCTATAGTGCCTTAGTGGTA 59.735 42.308 0.84 0.00 38.35 3.25
506 507 6.490721 AGTTAGCTATAGTGCCTTAGTGGTAG 59.509 42.308 0.84 0.00 38.35 3.18
507 508 3.574826 AGCTATAGTGCCTTAGTGGTAGC 59.425 47.826 0.84 0.00 38.35 3.58
508 509 3.321111 GCTATAGTGCCTTAGTGGTAGCA 59.679 47.826 0.84 0.00 38.35 3.49
513 514 2.816411 TGCCTTAGTGGTAGCACTAGT 58.184 47.619 28.19 11.83 38.69 2.57
514 515 3.972133 TGCCTTAGTGGTAGCACTAGTA 58.028 45.455 28.19 17.79 38.69 1.82
515 516 3.698040 TGCCTTAGTGGTAGCACTAGTAC 59.302 47.826 28.19 21.93 38.69 2.73
516 517 3.698040 GCCTTAGTGGTAGCACTAGTACA 59.302 47.826 28.19 16.52 38.69 2.90
517 518 4.159135 GCCTTAGTGGTAGCACTAGTACAA 59.841 45.833 28.19 17.64 38.69 2.41
518 519 5.679127 GCCTTAGTGGTAGCACTAGTACAAG 60.679 48.000 28.19 23.94 38.69 3.16
519 520 3.870633 AGTGGTAGCACTAGTACAAGC 57.129 47.619 25.49 0.00 32.97 4.01
520 521 2.163815 AGTGGTAGCACTAGTACAAGCG 59.836 50.000 25.49 0.00 32.97 4.68
521 522 1.135199 TGGTAGCACTAGTACAAGCGC 60.135 52.381 0.00 0.00 0.00 5.92
522 523 1.134560 GGTAGCACTAGTACAAGCGCT 59.865 52.381 2.64 2.64 38.40 5.92
523 524 2.357009 GGTAGCACTAGTACAAGCGCTA 59.643 50.000 12.05 6.32 36.35 4.26
524 525 3.004524 GGTAGCACTAGTACAAGCGCTAT 59.995 47.826 12.05 4.50 38.86 2.97
525 526 3.802948 AGCACTAGTACAAGCGCTATT 57.197 42.857 12.05 2.42 33.22 1.73
526 527 3.448686 AGCACTAGTACAAGCGCTATTG 58.551 45.455 12.05 9.38 33.22 1.90
527 528 2.033662 GCACTAGTACAAGCGCTATTGC 60.034 50.000 12.05 6.23 36.95 3.56
529 530 4.607955 CACTAGTACAAGCGCTATTGCTA 58.392 43.478 12.05 12.79 46.60 3.49
530 531 4.677378 CACTAGTACAAGCGCTATTGCTAG 59.323 45.833 27.47 27.47 46.60 3.42
531 532 2.474816 AGTACAAGCGCTATTGCTAGC 58.525 47.619 12.05 8.10 46.60 3.42
532 533 2.101582 AGTACAAGCGCTATTGCTAGCT 59.898 45.455 12.05 0.00 46.60 3.32
533 534 2.890808 ACAAGCGCTATTGCTAGCTA 57.109 45.000 12.05 9.14 46.60 3.32
534 535 3.393089 ACAAGCGCTATTGCTAGCTAT 57.607 42.857 12.05 16.50 46.60 2.97
535 536 4.521130 ACAAGCGCTATTGCTAGCTATA 57.479 40.909 12.05 16.75 46.60 1.31
536 537 4.883083 ACAAGCGCTATTGCTAGCTATAA 58.117 39.130 12.05 1.91 46.60 0.98
537 538 5.297547 ACAAGCGCTATTGCTAGCTATAAA 58.702 37.500 12.05 1.49 46.60 1.40
538 539 5.758296 ACAAGCGCTATTGCTAGCTATAAAA 59.242 36.000 12.05 1.07 46.60 1.52
539 540 5.847670 AGCGCTATTGCTAGCTATAAAAC 57.152 39.130 8.99 9.50 46.84 2.43
540 541 5.297547 AGCGCTATTGCTAGCTATAAAACA 58.702 37.500 8.99 0.00 46.84 2.83
541 542 5.758296 AGCGCTATTGCTAGCTATAAAACAA 59.242 36.000 8.99 0.00 46.84 2.83
542 543 6.073548 AGCGCTATTGCTAGCTATAAAACAAG 60.074 38.462 8.99 8.00 46.84 3.16
543 544 6.074005 CGCTATTGCTAGCTATAAAACAAGC 58.926 40.000 17.23 15.96 46.84 4.01
544 545 6.074005 GCTATTGCTAGCTATAAAACAAGCG 58.926 40.000 17.23 5.06 45.78 4.68
545 546 3.944422 TGCTAGCTATAAAACAAGCGC 57.056 42.857 17.23 0.00 43.63 5.92
546 547 3.531538 TGCTAGCTATAAAACAAGCGCT 58.468 40.909 17.23 2.64 43.63 5.92
547 548 4.689071 TGCTAGCTATAAAACAAGCGCTA 58.311 39.130 12.05 0.00 43.63 4.26
548 549 4.506654 TGCTAGCTATAAAACAAGCGCTAC 59.493 41.667 12.05 0.00 43.63 3.58
549 550 4.745620 GCTAGCTATAAAACAAGCGCTACT 59.254 41.667 12.05 0.00 43.63 2.57
550 551 5.919141 GCTAGCTATAAAACAAGCGCTACTA 59.081 40.000 12.05 0.00 43.63 1.82
551 552 6.129141 GCTAGCTATAAAACAAGCGCTACTAC 60.129 42.308 12.05 0.00 43.63 2.73
552 553 5.903810 AGCTATAAAACAAGCGCTACTACT 58.096 37.500 12.05 0.00 43.63 2.57
553 554 7.035840 AGCTATAAAACAAGCGCTACTACTA 57.964 36.000 12.05 0.00 43.63 1.82
554 555 7.140048 AGCTATAAAACAAGCGCTACTACTAG 58.860 38.462 12.05 7.60 43.63 2.57
555 556 7.013083 AGCTATAAAACAAGCGCTACTACTAGA 59.987 37.037 12.05 0.00 43.63 2.43
556 557 7.324135 GCTATAAAACAAGCGCTACTACTAGAG 59.676 40.741 12.05 8.10 0.00 2.43
557 558 5.388408 AAAACAAGCGCTACTACTAGAGT 57.612 39.130 12.05 0.00 42.69 3.24
558 559 5.388408 AAACAAGCGCTACTACTAGAGTT 57.612 39.130 12.05 1.96 39.81 3.01
559 560 5.388408 AACAAGCGCTACTACTAGAGTTT 57.612 39.130 12.05 0.00 39.81 2.66
560 561 5.388408 ACAAGCGCTACTACTAGAGTTTT 57.612 39.130 12.05 0.00 39.81 2.43
561 562 5.400703 ACAAGCGCTACTACTAGAGTTTTC 58.599 41.667 12.05 0.00 39.81 2.29
562 563 4.635833 AGCGCTACTACTAGAGTTTTCC 57.364 45.455 8.99 0.00 39.81 3.13
563 564 3.380954 AGCGCTACTACTAGAGTTTTCCC 59.619 47.826 8.99 0.00 39.81 3.97
564 565 3.380954 GCGCTACTACTAGAGTTTTCCCT 59.619 47.826 0.00 0.00 39.81 4.20
565 566 4.578105 GCGCTACTACTAGAGTTTTCCCTA 59.422 45.833 0.00 0.00 39.81 3.53
566 567 5.277925 GCGCTACTACTAGAGTTTTCCCTAG 60.278 48.000 0.00 0.00 39.81 3.02
567 568 5.821995 CGCTACTACTAGAGTTTTCCCTAGT 59.178 44.000 0.00 0.00 45.24 2.57
578 579 7.842982 AGAGTTTTCCCTAGTAGTGAAAGATC 58.157 38.462 7.70 9.50 30.41 2.75
623 629 4.993705 TCAACCTTCAAGTTGGTCCTAT 57.006 40.909 2.34 0.00 45.81 2.57
627 633 3.852578 ACCTTCAAGTTGGTCCTATGGAT 59.147 43.478 2.34 0.00 32.73 3.41
641 647 3.815401 CCTATGGATTGTGAACGGATTCC 59.185 47.826 0.00 0.00 33.49 3.01
693 699 2.933287 TTCACCGGGGTGGAGCAT 60.933 61.111 17.31 0.00 45.43 3.79
723 729 3.926058 AAATCGGCATAGGTTAGGTGT 57.074 42.857 0.00 0.00 0.00 4.16
768 774 6.125029 CCCATCTTTCTCCATATGAAAGTGT 58.875 40.000 3.65 0.00 46.08 3.55
782 788 0.250727 AAGTGTTGCGGGCACATAGT 60.251 50.000 0.00 0.00 39.17 2.12
783 789 0.611200 AGTGTTGCGGGCACATAGTA 59.389 50.000 0.00 0.00 39.17 1.82
854 860 0.110486 ACCTGCATCGAAAAGGTGGT 59.890 50.000 14.30 4.71 42.78 4.16
1012 1019 2.106684 CCCTCCCTTATGTTTAGGAGCC 59.893 54.545 0.00 0.00 43.86 4.70
1126 1133 9.624373 ATCACAAGATAAAGAAGTATGATGCTT 57.376 29.630 0.00 0.00 31.14 3.91
1156 1163 7.502895 GTCTGACTCTATTGGTCATAGTTCCTA 59.497 40.741 0.00 0.00 41.90 2.94
1164 1171 3.838317 TGGTCATAGTTCCTAGCTGTTGT 59.162 43.478 0.00 0.00 0.00 3.32
1241 1249 2.173356 TCGGGGCATCTGAGAATGATTT 59.827 45.455 0.00 0.00 0.00 2.17
1245 1253 4.205587 GGGCATCTGAGAATGATTTGAGT 58.794 43.478 0.00 0.00 0.00 3.41
1435 1454 4.694760 TCATGACCAATCGGATCTTGAT 57.305 40.909 0.00 0.00 35.59 2.57
1497 1516 3.818773 TGTATCCGTATCGAAGAGATGCA 59.181 43.478 0.00 0.00 43.63 3.96
1566 1585 2.291365 CATGACCAAAGCCGATGATCA 58.709 47.619 0.00 0.00 0.00 2.92
1586 1605 6.270695 TGATCATAAGCTATGTCCTCCATCAA 59.729 38.462 0.00 0.00 37.45 2.57
1648 1667 4.733405 TGAAACGTAGATCATCGTCATTCG 59.267 41.667 13.76 0.00 39.39 3.34
1690 1739 2.424842 AAAGCATCCCGAGGTTGGCA 62.425 55.000 0.00 0.00 0.00 4.92
1692 1741 2.438434 CATCCCGAGGTTGGCACC 60.438 66.667 0.00 0.00 44.67 5.01
1745 1794 4.222588 CCCCAATATGTTTCTTTGGAGCAA 59.777 41.667 2.57 0.00 42.02 3.91
1765 1814 0.402887 TTTCTTTTCCCGTCCCCTCC 59.597 55.000 0.00 0.00 0.00 4.30
1783 1832 4.545706 CCCCGGCATAGCGCTTCA 62.546 66.667 18.68 0.00 41.91 3.02
1801 1850 3.393089 TCACTTCCAGTTCTTCAGAGC 57.607 47.619 0.00 0.00 0.00 4.09
1815 1864 4.753610 TCTTCAGAGCAATCAACTGACTTG 59.246 41.667 0.00 0.00 39.80 3.16
1950 1999 0.110486 CAACAGGGTGGTGCCTTACT 59.890 55.000 0.00 0.00 37.43 2.24
1952 2001 0.766674 ACAGGGTGGTGCCTTACTGA 60.767 55.000 11.40 0.00 37.43 3.41
2012 2061 5.581126 TTCAGGATTCCAATGTATTGCAC 57.419 39.130 5.29 0.00 36.48 4.57
2022 2071 2.418368 TGTATTGCACCCAGGATCAC 57.582 50.000 0.00 0.00 0.00 3.06
2046 2095 2.432628 CTTGTCGGCGGACCACTC 60.433 66.667 20.34 0.00 42.73 3.51
2067 2116 3.830178 TCCCGTCACATTCTTTAGTGAGA 59.170 43.478 0.00 0.00 44.62 3.27
2078 2127 3.891977 TCTTTAGTGAGATGGAGCGCTAT 59.108 43.478 11.50 0.00 0.00 2.97
2089 2138 2.164422 TGGAGCGCTATCATCTTATCCG 59.836 50.000 11.50 0.00 0.00 4.18
2152 2201 1.152922 AAAAGGACCGGGAAACGCA 60.153 52.632 6.32 0.00 42.52 5.24
2161 2210 2.403378 GGGAAACGCAGCGGCATAA 61.403 57.895 21.15 0.00 41.24 1.90
2170 2219 0.739462 CAGCGGCATAAGAACCACGA 60.739 55.000 1.45 0.00 0.00 4.35
2179 2228 1.420430 AAGAACCACGAGAACCCAGA 58.580 50.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.504596 TGGGCCATGATCCACGCC 62.505 66.667 0.00 5.66 40.85 5.68
1 2 2.903855 CTGGGCCATGATCCACGC 60.904 66.667 6.72 0.00 0.00 5.34
2 3 2.203252 CCTGGGCCATGATCCACG 60.203 66.667 6.72 0.00 0.00 4.94
3 4 2.520260 GCCTGGGCCATGATCCAC 60.520 66.667 13.44 0.00 34.56 4.02
4 5 4.193893 CGCCTGGGCCATGATCCA 62.194 66.667 13.44 0.05 37.98 3.41
5 6 2.703675 ATTCGCCTGGGCCATGATCC 62.704 60.000 13.44 0.00 37.98 3.36
6 7 1.228367 ATTCGCCTGGGCCATGATC 60.228 57.895 13.44 0.00 37.98 2.92
7 8 1.228367 GATTCGCCTGGGCCATGAT 60.228 57.895 13.44 0.00 37.98 2.45
8 9 2.192979 GATTCGCCTGGGCCATGA 59.807 61.111 13.44 6.08 37.98 3.07
9 10 1.895707 GAGATTCGCCTGGGCCATG 60.896 63.158 6.72 5.29 37.98 3.66
10 11 2.512896 GAGATTCGCCTGGGCCAT 59.487 61.111 6.72 0.00 37.98 4.40
11 12 3.797353 GGAGATTCGCCTGGGCCA 61.797 66.667 5.85 5.85 37.98 5.36
12 13 4.918201 CGGAGATTCGCCTGGGCC 62.918 72.222 5.99 0.00 37.98 5.80
13 14 4.918201 CCGGAGATTCGCCTGGGC 62.918 72.222 0.00 0.82 37.85 5.36
14 15 4.918201 GCCGGAGATTCGCCTGGG 62.918 72.222 5.05 7.46 0.00 4.45
53 54 4.785453 GGTGCAGGAGCTTCCCCG 62.785 72.222 0.00 0.00 42.74 5.73
54 55 3.635268 CTGGTGCAGGAGCTTCCCC 62.635 68.421 0.00 0.00 42.74 4.81
55 56 2.045536 CTGGTGCAGGAGCTTCCC 60.046 66.667 0.00 0.00 42.74 3.97
78 79 3.597728 CTCTCCGCTCGCCTACCC 61.598 72.222 0.00 0.00 0.00 3.69
79 80 3.597728 CCTCTCCGCTCGCCTACC 61.598 72.222 0.00 0.00 0.00 3.18
80 81 4.273257 GCCTCTCCGCTCGCCTAC 62.273 72.222 0.00 0.00 0.00 3.18
81 82 4.507916 AGCCTCTCCGCTCGCCTA 62.508 66.667 0.00 0.00 32.06 3.93
91 92 0.390998 GTCTTGTGCAGGAGCCTCTC 60.391 60.000 0.00 0.00 41.13 3.20
92 93 1.676384 GTCTTGTGCAGGAGCCTCT 59.324 57.895 0.00 0.00 41.13 3.69
93 94 1.739562 CGTCTTGTGCAGGAGCCTC 60.740 63.158 0.00 0.00 41.13 4.70
94 95 2.345244 CGTCTTGTGCAGGAGCCT 59.655 61.111 0.00 0.00 41.13 4.58
95 96 2.743928 CCGTCTTGTGCAGGAGCC 60.744 66.667 0.00 0.00 41.13 4.70
96 97 1.739562 CTCCGTCTTGTGCAGGAGC 60.740 63.158 4.64 0.00 42.99 4.70
97 98 4.586618 CTCCGTCTTGTGCAGGAG 57.413 61.111 3.29 3.29 43.43 3.69
98 99 2.583441 CCCTCCGTCTTGTGCAGGA 61.583 63.158 0.00 0.00 0.00 3.86
99 100 2.046892 CCCTCCGTCTTGTGCAGG 60.047 66.667 0.00 0.00 0.00 4.85
100 101 1.079543 CTCCCTCCGTCTTGTGCAG 60.080 63.158 0.00 0.00 0.00 4.41
101 102 2.583441 CCTCCCTCCGTCTTGTGCA 61.583 63.158 0.00 0.00 0.00 4.57
102 103 2.266055 CCTCCCTCCGTCTTGTGC 59.734 66.667 0.00 0.00 0.00 4.57
103 104 2.266055 GCCTCCCTCCGTCTTGTG 59.734 66.667 0.00 0.00 0.00 3.33
104 105 3.382832 CGCCTCCCTCCGTCTTGT 61.383 66.667 0.00 0.00 0.00 3.16
105 106 3.382832 ACGCCTCCCTCCGTCTTG 61.383 66.667 0.00 0.00 31.00 3.02
106 107 3.382832 CACGCCTCCCTCCGTCTT 61.383 66.667 0.00 0.00 35.17 3.01
124 125 4.785453 GTTGCCAGAGCCTCCCCG 62.785 72.222 0.00 0.00 38.69 5.73
125 126 2.988839 ATGTTGCCAGAGCCTCCCC 61.989 63.158 0.00 0.00 38.69 4.81
126 127 1.751927 CATGTTGCCAGAGCCTCCC 60.752 63.158 0.00 0.00 38.69 4.30
127 128 1.001641 ACATGTTGCCAGAGCCTCC 60.002 57.895 0.00 0.00 38.69 4.30
128 129 1.310933 CCACATGTTGCCAGAGCCTC 61.311 60.000 0.00 0.00 38.69 4.70
129 130 1.303888 CCACATGTTGCCAGAGCCT 60.304 57.895 0.00 0.00 38.69 4.58
130 131 1.604593 ACCACATGTTGCCAGAGCC 60.605 57.895 0.00 0.00 38.69 4.70
131 132 1.582968 CACCACATGTTGCCAGAGC 59.417 57.895 0.00 0.00 40.48 4.09
132 133 1.174078 TGCACCACATGTTGCCAGAG 61.174 55.000 17.65 0.00 0.00 3.35
133 134 1.152798 TGCACCACATGTTGCCAGA 60.153 52.632 17.65 0.00 0.00 3.86
134 135 1.007038 GTGCACCACATGTTGCCAG 60.007 57.895 17.65 1.01 34.08 4.85
135 136 1.755783 TGTGCACCACATGTTGCCA 60.756 52.632 15.69 12.74 39.62 4.92
136 137 1.300080 GTGTGCACCACATGTTGCC 60.300 57.895 15.69 10.71 46.32 4.52
137 138 4.324424 GTGTGCACCACATGTTGC 57.676 55.556 15.69 14.36 46.32 4.17
147 148 3.022607 AGTAGTACTTTCGGTGTGCAC 57.977 47.619 10.75 10.75 0.00 4.57
148 149 4.852134 TTAGTAGTACTTTCGGTGTGCA 57.148 40.909 8.40 0.00 0.00 4.57
149 150 4.802563 GGATTAGTAGTACTTTCGGTGTGC 59.197 45.833 8.40 0.00 0.00 4.57
150 151 5.957798 TGGATTAGTAGTACTTTCGGTGTG 58.042 41.667 8.40 0.00 0.00 3.82
151 152 6.594788 TTGGATTAGTAGTACTTTCGGTGT 57.405 37.500 8.40 0.00 0.00 4.16
152 153 7.095270 AGTTTGGATTAGTAGTACTTTCGGTG 58.905 38.462 8.40 0.00 0.00 4.94
153 154 7.237209 AGTTTGGATTAGTAGTACTTTCGGT 57.763 36.000 8.40 0.00 0.00 4.69
154 155 8.680903 TCTAGTTTGGATTAGTAGTACTTTCGG 58.319 37.037 8.40 0.00 0.00 4.30
180 181 9.367444 CGAAAGTACTACTAATCCAAACTTGAT 57.633 33.333 0.00 0.00 0.00 2.57
181 182 8.579006 TCGAAAGTACTACTAATCCAAACTTGA 58.421 33.333 0.00 0.00 0.00 3.02
182 183 8.645487 GTCGAAAGTACTACTAATCCAAACTTG 58.355 37.037 0.00 0.00 0.00 3.16
183 184 8.362639 TGTCGAAAGTACTACTAATCCAAACTT 58.637 33.333 0.00 0.00 0.00 2.66
184 185 7.889469 TGTCGAAAGTACTACTAATCCAAACT 58.111 34.615 0.00 0.00 0.00 2.66
185 186 8.592998 CATGTCGAAAGTACTACTAATCCAAAC 58.407 37.037 0.00 0.00 0.00 2.93
186 187 7.277098 GCATGTCGAAAGTACTACTAATCCAAA 59.723 37.037 0.00 0.00 0.00 3.28
187 188 6.755141 GCATGTCGAAAGTACTACTAATCCAA 59.245 38.462 0.00 0.00 0.00 3.53
188 189 6.127563 TGCATGTCGAAAGTACTACTAATCCA 60.128 38.462 0.00 0.00 0.00 3.41
189 190 6.198591 GTGCATGTCGAAAGTACTACTAATCC 59.801 42.308 0.00 0.00 0.00 3.01
190 191 6.198591 GGTGCATGTCGAAAGTACTACTAATC 59.801 42.308 0.00 0.00 0.00 1.75
191 192 6.040878 GGTGCATGTCGAAAGTACTACTAAT 58.959 40.000 0.00 0.00 0.00 1.73
192 193 5.047872 TGGTGCATGTCGAAAGTACTACTAA 60.048 40.000 0.00 0.00 0.00 2.24
193 194 4.460034 TGGTGCATGTCGAAAGTACTACTA 59.540 41.667 0.00 0.00 0.00 1.82
194 195 3.257375 TGGTGCATGTCGAAAGTACTACT 59.743 43.478 0.00 0.00 0.00 2.57
195 196 3.367025 GTGGTGCATGTCGAAAGTACTAC 59.633 47.826 0.00 0.00 0.00 2.73
196 197 3.006003 TGTGGTGCATGTCGAAAGTACTA 59.994 43.478 0.00 0.00 0.00 1.82
197 198 2.224185 TGTGGTGCATGTCGAAAGTACT 60.224 45.455 0.00 0.00 0.00 2.73
198 199 2.139917 TGTGGTGCATGTCGAAAGTAC 58.860 47.619 0.00 0.00 0.00 2.73
199 200 2.535012 TGTGGTGCATGTCGAAAGTA 57.465 45.000 0.00 0.00 0.00 2.24
200 201 1.896220 ATGTGGTGCATGTCGAAAGT 58.104 45.000 0.00 0.00 36.26 2.66
212 213 1.526575 GGTGGAGGCAACATGTGGTG 61.527 60.000 0.00 0.00 41.41 4.17
213 214 1.228552 GGTGGAGGCAACATGTGGT 60.229 57.895 0.00 0.00 41.41 4.16
214 215 1.075482 AGGTGGAGGCAACATGTGG 59.925 57.895 0.00 0.00 41.41 4.17
215 216 0.250858 TCAGGTGGAGGCAACATGTG 60.251 55.000 0.00 0.00 41.41 3.21
216 217 0.478072 TTCAGGTGGAGGCAACATGT 59.522 50.000 0.00 0.00 41.41 3.21
217 218 1.747355 GATTCAGGTGGAGGCAACATG 59.253 52.381 0.00 0.00 41.41 3.21
218 219 1.637553 AGATTCAGGTGGAGGCAACAT 59.362 47.619 0.00 0.00 41.41 2.71
219 220 1.067295 AGATTCAGGTGGAGGCAACA 58.933 50.000 0.00 0.00 41.41 3.33
220 221 3.350219 TTAGATTCAGGTGGAGGCAAC 57.650 47.619 0.00 0.00 0.00 4.17
221 222 3.782523 AGATTAGATTCAGGTGGAGGCAA 59.217 43.478 0.00 0.00 0.00 4.52
222 223 3.135348 CAGATTAGATTCAGGTGGAGGCA 59.865 47.826 0.00 0.00 0.00 4.75
223 224 3.737850 CAGATTAGATTCAGGTGGAGGC 58.262 50.000 0.00 0.00 0.00 4.70
224 225 3.135348 TGCAGATTAGATTCAGGTGGAGG 59.865 47.826 0.00 0.00 0.00 4.30
225 226 4.412796 TGCAGATTAGATTCAGGTGGAG 57.587 45.455 0.00 0.00 0.00 3.86
226 227 5.104402 TGAATGCAGATTAGATTCAGGTGGA 60.104 40.000 0.00 0.00 32.44 4.02
227 228 5.128205 TGAATGCAGATTAGATTCAGGTGG 58.872 41.667 0.00 0.00 32.44 4.61
228 229 6.879276 ATGAATGCAGATTAGATTCAGGTG 57.121 37.500 0.00 0.00 38.99 4.00
229 230 7.893124 AAATGAATGCAGATTAGATTCAGGT 57.107 32.000 0.00 0.00 38.99 4.00
230 231 9.674824 GTTAAATGAATGCAGATTAGATTCAGG 57.325 33.333 0.00 0.00 38.99 3.86
231 232 9.674824 GGTTAAATGAATGCAGATTAGATTCAG 57.325 33.333 0.00 0.00 38.99 3.02
232 233 8.632679 GGGTTAAATGAATGCAGATTAGATTCA 58.367 33.333 0.00 0.00 39.71 2.57
233 234 8.632679 TGGGTTAAATGAATGCAGATTAGATTC 58.367 33.333 0.00 0.00 0.00 2.52
234 235 8.416329 GTGGGTTAAATGAATGCAGATTAGATT 58.584 33.333 0.00 0.00 0.00 2.40
235 236 7.781693 AGTGGGTTAAATGAATGCAGATTAGAT 59.218 33.333 0.00 0.00 0.00 1.98
236 237 7.067372 CAGTGGGTTAAATGAATGCAGATTAGA 59.933 37.037 0.00 0.00 0.00 2.10
237 238 7.148018 ACAGTGGGTTAAATGAATGCAGATTAG 60.148 37.037 0.00 0.00 0.00 1.73
238 239 6.663093 ACAGTGGGTTAAATGAATGCAGATTA 59.337 34.615 0.00 0.00 0.00 1.75
239 240 5.481473 ACAGTGGGTTAAATGAATGCAGATT 59.519 36.000 0.00 0.00 0.00 2.40
240 241 5.018809 ACAGTGGGTTAAATGAATGCAGAT 58.981 37.500 0.00 0.00 0.00 2.90
241 242 4.406456 ACAGTGGGTTAAATGAATGCAGA 58.594 39.130 0.00 0.00 0.00 4.26
242 243 4.789012 ACAGTGGGTTAAATGAATGCAG 57.211 40.909 0.00 0.00 0.00 4.41
243 244 6.849085 ATAACAGTGGGTTAAATGAATGCA 57.151 33.333 0.00 0.00 44.70 3.96
304 305 9.962783 CGCTCTAGGTTTTATATACAGTACTTT 57.037 33.333 0.00 0.00 0.00 2.66
305 306 9.347240 TCGCTCTAGGTTTTATATACAGTACTT 57.653 33.333 0.00 0.00 0.00 2.24
306 307 8.915057 TCGCTCTAGGTTTTATATACAGTACT 57.085 34.615 0.00 0.00 0.00 2.73
307 308 9.956720 TTTCGCTCTAGGTTTTATATACAGTAC 57.043 33.333 0.00 0.00 0.00 2.73
314 315 9.780186 AGCTTATTTTCGCTCTAGGTTTTATAT 57.220 29.630 0.00 0.00 0.00 0.86
315 316 9.042008 CAGCTTATTTTCGCTCTAGGTTTTATA 57.958 33.333 0.00 0.00 33.45 0.98
316 317 7.467403 GCAGCTTATTTTCGCTCTAGGTTTTAT 60.467 37.037 0.00 0.00 33.45 1.40
317 318 6.183360 GCAGCTTATTTTCGCTCTAGGTTTTA 60.183 38.462 0.00 0.00 33.45 1.52
318 319 5.392057 GCAGCTTATTTTCGCTCTAGGTTTT 60.392 40.000 0.00 0.00 33.45 2.43
319 320 4.095036 GCAGCTTATTTTCGCTCTAGGTTT 59.905 41.667 0.00 0.00 33.45 3.27
320 321 3.623510 GCAGCTTATTTTCGCTCTAGGTT 59.376 43.478 0.00 0.00 33.45 3.50
321 322 3.198872 GCAGCTTATTTTCGCTCTAGGT 58.801 45.455 0.00 0.00 33.45 3.08
322 323 3.198068 TGCAGCTTATTTTCGCTCTAGG 58.802 45.455 0.00 0.00 33.45 3.02
323 324 5.415415 AATGCAGCTTATTTTCGCTCTAG 57.585 39.130 0.00 0.00 33.45 2.43
324 325 5.818136 AAATGCAGCTTATTTTCGCTCTA 57.182 34.783 0.00 0.00 33.45 2.43
325 326 4.708726 AAATGCAGCTTATTTTCGCTCT 57.291 36.364 0.00 0.00 33.45 4.09
326 327 5.367159 GAAAATGCAGCTTATTTTCGCTC 57.633 39.130 21.15 7.87 41.71 5.03
340 341 8.729805 ACTTTTCCTGTATTTTTGAAAATGCA 57.270 26.923 15.73 15.73 44.77 3.96
344 345 9.877178 TGCTAACTTTTCCTGTATTTTTGAAAA 57.123 25.926 0.00 0.00 35.89 2.29
345 346 9.528018 CTGCTAACTTTTCCTGTATTTTTGAAA 57.472 29.630 0.00 0.00 0.00 2.69
346 347 7.651704 GCTGCTAACTTTTCCTGTATTTTTGAA 59.348 33.333 0.00 0.00 0.00 2.69
347 348 7.145323 GCTGCTAACTTTTCCTGTATTTTTGA 58.855 34.615 0.00 0.00 0.00 2.69
348 349 6.922957 TGCTGCTAACTTTTCCTGTATTTTTG 59.077 34.615 0.00 0.00 0.00 2.44
349 350 7.049799 TGCTGCTAACTTTTCCTGTATTTTT 57.950 32.000 0.00 0.00 0.00 1.94
350 351 6.648879 TGCTGCTAACTTTTCCTGTATTTT 57.351 33.333 0.00 0.00 0.00 1.82
351 352 6.447162 GTTGCTGCTAACTTTTCCTGTATTT 58.553 36.000 0.00 0.00 0.00 1.40
352 353 5.334879 CGTTGCTGCTAACTTTTCCTGTATT 60.335 40.000 0.00 0.00 0.00 1.89
353 354 4.154195 CGTTGCTGCTAACTTTTCCTGTAT 59.846 41.667 0.00 0.00 0.00 2.29
354 355 3.496884 CGTTGCTGCTAACTTTTCCTGTA 59.503 43.478 0.00 0.00 0.00 2.74
355 356 2.290641 CGTTGCTGCTAACTTTTCCTGT 59.709 45.455 0.00 0.00 0.00 4.00
356 357 2.290641 ACGTTGCTGCTAACTTTTCCTG 59.709 45.455 0.00 0.00 0.00 3.86
357 358 2.572290 ACGTTGCTGCTAACTTTTCCT 58.428 42.857 0.00 0.00 0.00 3.36
358 359 3.349488 AACGTTGCTGCTAACTTTTCC 57.651 42.857 0.00 0.00 0.00 3.13
359 360 5.287513 TGAAAAACGTTGCTGCTAACTTTTC 59.712 36.000 20.09 20.09 36.40 2.29
360 361 5.164954 TGAAAAACGTTGCTGCTAACTTTT 58.835 33.333 0.00 7.28 34.67 2.27
361 362 4.739195 TGAAAAACGTTGCTGCTAACTTT 58.261 34.783 0.00 0.00 0.00 2.66
362 363 4.364415 TGAAAAACGTTGCTGCTAACTT 57.636 36.364 0.00 0.00 0.00 2.66
363 364 4.364415 TTGAAAAACGTTGCTGCTAACT 57.636 36.364 0.00 0.00 0.00 2.24
364 365 5.287513 TCTTTTGAAAAACGTTGCTGCTAAC 59.712 36.000 0.00 3.20 0.00 2.34
365 366 5.403246 TCTTTTGAAAAACGTTGCTGCTAA 58.597 33.333 0.00 0.00 0.00 3.09
366 367 4.987832 TCTTTTGAAAAACGTTGCTGCTA 58.012 34.783 0.00 0.00 0.00 3.49
367 368 3.843999 TCTTTTGAAAAACGTTGCTGCT 58.156 36.364 0.00 0.00 0.00 4.24
368 369 4.576106 TTCTTTTGAAAAACGTTGCTGC 57.424 36.364 0.00 0.00 35.17 5.25
399 400 9.332301 GAAAGCGCTACTGATAATAGTAAGTAG 57.668 37.037 12.05 5.19 43.22 2.57
400 401 9.064706 AGAAAGCGCTACTGATAATAGTAAGTA 57.935 33.333 12.05 0.00 33.09 2.24
401 402 7.863375 CAGAAAGCGCTACTGATAATAGTAAGT 59.137 37.037 28.71 0.00 33.09 2.24
402 403 7.148885 GCAGAAAGCGCTACTGATAATAGTAAG 60.149 40.741 33.43 13.74 33.09 2.34
403 404 6.641314 GCAGAAAGCGCTACTGATAATAGTAA 59.359 38.462 33.43 0.00 33.09 2.24
404 405 6.150318 GCAGAAAGCGCTACTGATAATAGTA 58.850 40.000 33.43 0.00 34.07 1.82
405 406 4.985409 GCAGAAAGCGCTACTGATAATAGT 59.015 41.667 33.43 6.38 34.07 2.12
406 407 5.508124 GCAGAAAGCGCTACTGATAATAG 57.492 43.478 33.43 15.71 34.07 1.73
437 438 8.937634 TTGTTTTATACCTAGTTAGCAGTAGC 57.062 34.615 0.00 0.00 42.56 3.58
438 439 9.032420 GCTTGTTTTATACCTAGTTAGCAGTAG 57.968 37.037 0.00 0.00 0.00 2.57
439 440 7.703621 CGCTTGTTTTATACCTAGTTAGCAGTA 59.296 37.037 0.00 0.00 0.00 2.74
440 441 6.534079 CGCTTGTTTTATACCTAGTTAGCAGT 59.466 38.462 0.00 0.00 0.00 4.40
441 442 6.755141 TCGCTTGTTTTATACCTAGTTAGCAG 59.245 38.462 0.00 0.00 0.00 4.24
442 443 6.632909 TCGCTTGTTTTATACCTAGTTAGCA 58.367 36.000 0.00 0.00 0.00 3.49
443 444 6.292221 GCTCGCTTGTTTTATACCTAGTTAGC 60.292 42.308 0.00 0.00 0.00 3.09
444 445 6.074994 CGCTCGCTTGTTTTATACCTAGTTAG 60.075 42.308 0.00 0.00 0.00 2.34
445 446 5.745294 CGCTCGCTTGTTTTATACCTAGTTA 59.255 40.000 0.00 0.00 0.00 2.24
446 447 4.565564 CGCTCGCTTGTTTTATACCTAGTT 59.434 41.667 0.00 0.00 0.00 2.24
447 448 4.110482 CGCTCGCTTGTTTTATACCTAGT 58.890 43.478 0.00 0.00 0.00 2.57
448 449 3.060473 GCGCTCGCTTGTTTTATACCTAG 60.060 47.826 0.00 0.00 38.26 3.02
449 450 2.861935 GCGCTCGCTTGTTTTATACCTA 59.138 45.455 0.00 0.00 38.26 3.08
450 451 1.664151 GCGCTCGCTTGTTTTATACCT 59.336 47.619 0.00 0.00 38.26 3.08
451 452 2.086934 GCGCTCGCTTGTTTTATACC 57.913 50.000 0.00 0.00 38.26 2.73
476 477 5.793030 AAGGCACTATAGCTAACTGGTAG 57.207 43.478 0.00 0.00 38.49 3.18
477 478 6.264744 CACTAAGGCACTATAGCTAACTGGTA 59.735 42.308 0.00 0.00 38.49 3.25
478 479 5.069251 CACTAAGGCACTATAGCTAACTGGT 59.931 44.000 0.00 0.00 38.49 4.00
479 480 5.509840 CCACTAAGGCACTATAGCTAACTGG 60.510 48.000 0.00 0.00 38.49 4.00
480 481 5.069251 ACCACTAAGGCACTATAGCTAACTG 59.931 44.000 0.00 0.00 43.14 3.16
481 482 5.209659 ACCACTAAGGCACTATAGCTAACT 58.790 41.667 0.00 0.00 43.14 2.24
482 483 5.532664 ACCACTAAGGCACTATAGCTAAC 57.467 43.478 0.00 0.00 43.14 2.34
483 484 5.243283 GCTACCACTAAGGCACTATAGCTAA 59.757 44.000 0.00 0.00 43.14 3.09
484 485 4.765856 GCTACCACTAAGGCACTATAGCTA 59.234 45.833 0.00 0.00 43.14 3.32
485 486 3.574826 GCTACCACTAAGGCACTATAGCT 59.425 47.826 0.00 0.00 43.14 3.32
486 487 3.321111 TGCTACCACTAAGGCACTATAGC 59.679 47.826 0.00 0.00 43.14 2.97
500 501 2.527100 CGCTTGTACTAGTGCTACCAC 58.473 52.381 12.42 0.00 42.39 4.16
501 502 1.135199 GCGCTTGTACTAGTGCTACCA 60.135 52.381 28.09 0.00 45.74 3.25
502 503 1.557651 GCGCTTGTACTAGTGCTACC 58.442 55.000 28.09 6.55 45.74 3.18
507 508 3.843426 GCAATAGCGCTTGTACTAGTG 57.157 47.619 18.68 7.01 37.48 2.74
520 521 6.074005 CGCTTGTTTTATAGCTAGCAATAGC 58.926 40.000 18.83 12.91 43.12 2.97
521 522 6.073548 AGCGCTTGTTTTATAGCTAGCAATAG 60.074 38.462 18.83 5.22 35.25 1.73
522 523 5.758296 AGCGCTTGTTTTATAGCTAGCAATA 59.242 36.000 18.83 1.22 35.25 1.90
523 524 4.576463 AGCGCTTGTTTTATAGCTAGCAAT 59.424 37.500 18.83 0.00 35.25 3.56
524 525 3.938963 AGCGCTTGTTTTATAGCTAGCAA 59.061 39.130 18.83 0.00 35.25 3.91
525 526 3.531538 AGCGCTTGTTTTATAGCTAGCA 58.468 40.909 18.83 3.19 35.25 3.49
526 527 4.745620 AGTAGCGCTTGTTTTATAGCTAGC 59.254 41.667 18.68 6.62 37.79 3.42
527 528 7.140048 AGTAGTAGCGCTTGTTTTATAGCTAG 58.860 38.462 18.68 0.00 37.79 3.42
528 529 7.035840 AGTAGTAGCGCTTGTTTTATAGCTA 57.964 36.000 18.68 0.00 36.30 3.32
529 530 5.903810 AGTAGTAGCGCTTGTTTTATAGCT 58.096 37.500 18.68 0.00 38.57 3.32
530 531 7.137426 TCTAGTAGTAGCGCTTGTTTTATAGC 58.863 38.462 18.68 0.00 0.00 2.97
531 532 8.344098 ACTCTAGTAGTAGCGCTTGTTTTATAG 58.656 37.037 18.68 10.06 36.36 1.31
532 533 8.218338 ACTCTAGTAGTAGCGCTTGTTTTATA 57.782 34.615 18.68 0.00 36.36 0.98
533 534 7.098074 ACTCTAGTAGTAGCGCTTGTTTTAT 57.902 36.000 18.68 0.00 36.36 1.40
534 535 6.506500 ACTCTAGTAGTAGCGCTTGTTTTA 57.493 37.500 18.68 2.71 36.36 1.52
535 536 5.388408 ACTCTAGTAGTAGCGCTTGTTTT 57.612 39.130 18.68 1.44 36.36 2.43
536 537 5.388408 AACTCTAGTAGTAGCGCTTGTTT 57.612 39.130 18.68 1.02 37.50 2.83
537 538 5.388408 AAACTCTAGTAGTAGCGCTTGTT 57.612 39.130 18.68 3.95 37.50 2.83
538 539 5.388408 AAAACTCTAGTAGTAGCGCTTGT 57.612 39.130 18.68 5.70 37.50 3.16
539 540 4.799428 GGAAAACTCTAGTAGTAGCGCTTG 59.201 45.833 18.68 0.00 37.50 4.01
540 541 4.142204 GGGAAAACTCTAGTAGTAGCGCTT 60.142 45.833 18.68 0.00 37.50 4.68
541 542 3.380954 GGGAAAACTCTAGTAGTAGCGCT 59.619 47.826 17.26 17.26 37.50 5.92
542 543 3.380954 AGGGAAAACTCTAGTAGTAGCGC 59.619 47.826 0.00 0.00 37.50 5.92
543 544 5.821995 ACTAGGGAAAACTCTAGTAGTAGCG 59.178 44.000 7.85 0.00 42.86 4.26
549 550 9.240734 CTTTCACTACTAGGGAAAACTCTAGTA 57.759 37.037 13.41 13.87 45.95 1.82
550 551 7.949006 TCTTTCACTACTAGGGAAAACTCTAGT 59.051 37.037 13.41 13.17 45.95 2.57
551 552 8.350852 TCTTTCACTACTAGGGAAAACTCTAG 57.649 38.462 13.41 0.00 45.95 2.43
552 553 8.896722 ATCTTTCACTACTAGGGAAAACTCTA 57.103 34.615 13.41 0.43 45.95 2.43
553 554 7.093245 GGATCTTTCACTACTAGGGAAAACTCT 60.093 40.741 13.41 0.99 45.95 3.24
554 555 7.042950 GGATCTTTCACTACTAGGGAAAACTC 58.957 42.308 13.41 11.99 45.95 3.01
555 556 6.070136 GGGATCTTTCACTACTAGGGAAAACT 60.070 42.308 13.41 5.12 45.95 2.66
556 557 6.070136 AGGGATCTTTCACTACTAGGGAAAAC 60.070 42.308 13.41 8.55 45.95 2.43
557 558 6.030082 AGGGATCTTTCACTACTAGGGAAAA 58.970 40.000 13.41 6.56 45.95 2.29
558 559 5.600749 AGGGATCTTTCACTACTAGGGAAA 58.399 41.667 12.12 12.12 44.67 3.13
559 560 5.222278 AGGGATCTTTCACTACTAGGGAA 57.778 43.478 0.00 0.00 35.49 3.97
560 561 4.901785 AGGGATCTTTCACTACTAGGGA 57.098 45.455 0.00 0.00 32.33 4.20
561 562 7.013834 AGAATAGGGATCTTTCACTACTAGGG 58.986 42.308 0.00 0.00 40.65 3.53
562 563 9.238368 CTAGAATAGGGATCTTTCACTACTAGG 57.762 40.741 0.00 0.00 40.65 3.02
623 629 1.340600 GGGGAATCCGTTCACAATCCA 60.341 52.381 0.00 0.00 39.61 3.41
627 633 1.003118 CAGAGGGGAATCCGTTCACAA 59.997 52.381 0.00 0.00 39.61 3.33
723 729 4.892934 GGGCTTACCATGTTCCATCAATAA 59.107 41.667 0.00 0.00 39.85 1.40
768 774 2.411628 ACATTACTATGTGCCCGCAA 57.588 45.000 0.00 0.00 43.29 4.85
782 788 4.942944 TGAGACTTCCTCTACCCACATTA 58.057 43.478 0.00 0.00 42.44 1.90
783 789 3.791320 TGAGACTTCCTCTACCCACATT 58.209 45.455 0.00 0.00 42.44 2.71
854 860 0.401738 CCAGGAGAAAGCCCAGTCAA 59.598 55.000 0.00 0.00 0.00 3.18
919 926 1.000060 ACTTTCATTCGACGTTCCGGA 60.000 47.619 0.00 0.00 0.00 5.14
969 976 2.687902 GGGGAAAGGGGCCCTAAC 59.312 66.667 29.08 21.97 45.30 2.34
1023 1030 0.963962 TACCACCACAGGTCGTTCTC 59.036 55.000 0.00 0.00 42.06 2.87
1066 1073 0.909610 TTTCTCAGAGGGTGCGGGAT 60.910 55.000 0.00 0.00 0.00 3.85
1126 1133 5.745312 ATGACCAATAGAGTCAGACACAA 57.255 39.130 2.66 0.00 46.76 3.33
1164 1171 3.372730 GCAAATGAGCACCGGCCA 61.373 61.111 0.00 0.00 42.56 5.36
1241 1249 3.194968 GGAGTTTCCCTTCATACGACTCA 59.805 47.826 0.00 0.00 35.07 3.41
1380 1399 1.884926 GCTCTTCGCGAATCCCAGG 60.885 63.158 23.67 9.68 0.00 4.45
1497 1516 4.792704 GCACAATGATCCGAACACTTTGTT 60.793 41.667 0.00 0.00 44.37 2.83
1551 1570 3.144506 AGCTTATGATCATCGGCTTTGG 58.855 45.455 21.97 5.22 0.00 3.28
1566 1585 6.730038 AGATCTTGATGGAGGACATAGCTTAT 59.270 38.462 0.00 0.00 40.72 1.73
1586 1605 6.268617 TCCATGGATAGTTTCATTCGAGATCT 59.731 38.462 11.44 0.00 0.00 2.75
1648 1667 4.397832 TAACCCCACGGCGGCTTC 62.398 66.667 13.24 0.00 0.00 3.86
1649 1668 4.404098 CTAACCCCACGGCGGCTT 62.404 66.667 13.24 0.00 0.00 4.35
1731 1780 6.017934 GGGAAAAGAAATTGCTCCAAAGAAAC 60.018 38.462 0.00 0.00 0.00 2.78
1745 1794 1.005569 GGAGGGGACGGGAAAAGAAAT 59.994 52.381 0.00 0.00 0.00 2.17
1801 1850 4.392940 AGAAGGGACAAGTCAGTTGATTG 58.607 43.478 0.00 0.00 38.60 2.67
1815 1864 2.565841 CCGGATCAATGAAGAAGGGAC 58.434 52.381 0.00 0.00 0.00 4.46
1976 2025 1.355381 TCCTGAAGCACCACCATGAAT 59.645 47.619 0.00 0.00 0.00 2.57
2012 2061 2.022195 CAAGCTCATTGTGATCCTGGG 58.978 52.381 0.00 0.00 33.95 4.45
2022 2071 1.741401 TCCGCCGACAAGCTCATTG 60.741 57.895 0.00 0.00 45.01 2.82
2046 2095 4.188247 TCTCACTAAAGAATGTGACGGG 57.812 45.455 0.00 0.00 38.15 5.28
2052 2101 4.437239 CGCTCCATCTCACTAAAGAATGT 58.563 43.478 0.00 0.00 0.00 2.71
2067 2116 3.181482 CGGATAAGATGATAGCGCTCCAT 60.181 47.826 16.34 19.24 0.00 3.41
2078 2127 4.522114 TGCATTTTCCACGGATAAGATGA 58.478 39.130 0.00 0.00 0.00 2.92
2089 2138 4.285292 CGATAGCTTGATGCATTTTCCAC 58.715 43.478 0.00 0.00 45.94 4.02
2127 2176 4.036616 CGTTTCCCGGTCCTTTTCTTTTAA 59.963 41.667 0.00 0.00 0.00 1.52
2152 2201 0.460284 CTCGTGGTTCTTATGCCGCT 60.460 55.000 0.00 0.00 33.41 5.52
2161 2210 1.344763 CTTCTGGGTTCTCGTGGTTCT 59.655 52.381 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.