Multiple sequence alignment - TraesCS6B01G202300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G202300 chr6B 100.000 2396 0 0 1 2396 246982645 246985040 0.000000e+00 4425.0
1 TraesCS6B01G202300 chr6B 93.855 1660 85 9 744 2396 420862204 420863853 0.000000e+00 2484.0
2 TraesCS6B01G202300 chr6B 96.252 507 4 1 1 492 647357039 647357545 0.000000e+00 817.0
3 TraesCS6B01G202300 chr6B 96.059 203 7 1 492 694 89047514 89047715 1.780000e-86 329.0
4 TraesCS6B01G202300 chr2A 97.085 1681 33 4 717 2396 395710742 395709077 0.000000e+00 2819.0
5 TraesCS6B01G202300 chr2A 95.116 1679 75 5 718 2396 166818341 166816670 0.000000e+00 2639.0
6 TraesCS6B01G202300 chr2A 96.245 506 4 1 1 491 136482866 136482361 0.000000e+00 815.0
7 TraesCS6B01G202300 chr7B 95.473 1679 69 5 718 2396 257652464 257654135 0.000000e+00 2673.0
8 TraesCS6B01G202300 chr7B 95.074 203 9 1 492 694 600456816 600456615 3.840000e-83 318.0
9 TraesCS6B01G202300 chr7B 80.519 154 26 4 334 485 618331325 618331476 5.410000e-22 115.0
10 TraesCS6B01G202300 chr7B 80.000 155 27 4 334 485 618764622 618764469 7.000000e-21 111.0
11 TraesCS6B01G202300 chr7B 84.545 110 17 0 109 218 205365747 205365638 2.520000e-20 110.0
12 TraesCS6B01G202300 chr7B 82.418 91 7 4 60 142 460586414 460586503 1.190000e-08 71.3
13 TraesCS6B01G202300 chr7B 100.000 28 0 0 109 136 716372312 716372339 4.000000e-03 52.8
14 TraesCS6B01G202300 chr5B 95.284 1675 73 4 725 2396 47328170 47326499 0.000000e+00 2651.0
15 TraesCS6B01G202300 chr5B 94.699 1679 76 5 725 2396 47323125 47321453 0.000000e+00 2595.0
16 TraesCS6B01G202300 chr7A 95.176 1679 74 5 718 2396 299313386 299311715 0.000000e+00 2645.0
17 TraesCS6B01G202300 chr7A 100.000 29 0 0 690 718 705774624 705774596 1.000000e-03 54.7
18 TraesCS6B01G202300 chr5A 95.378 1666 70 5 731 2396 484830714 484832372 0.000000e+00 2643.0
19 TraesCS6B01G202300 chr5A 80.070 286 34 16 214 491 519687871 519688141 8.740000e-45 191.0
20 TraesCS6B01G202300 chr1A 94.923 1694 75 7 703 2396 546232097 546233779 0.000000e+00 2641.0
21 TraesCS6B01G202300 chr1B 94.069 1686 79 10 711 2396 526807644 526809308 0.000000e+00 2540.0
22 TraesCS6B01G202300 chr1B 96.450 507 2 2 1 492 465393247 465393752 0.000000e+00 822.0
23 TraesCS6B01G202300 chr4A 94.862 506 10 2 1 491 98867853 98868357 0.000000e+00 776.0
24 TraesCS6B01G202300 chr4A 96.059 203 7 1 492 694 566755628 566755427 1.780000e-86 329.0
25 TraesCS6B01G202300 chr4B 96.059 203 7 1 492 694 58937358 58937157 1.780000e-86 329.0
26 TraesCS6B01G202300 chr3A 95.567 203 8 1 492 694 67433043 67433244 8.260000e-85 324.0
27 TraesCS6B01G202300 chr3A 82.128 235 32 7 2119 2351 521925002 521924776 2.430000e-45 193.0
28 TraesCS6B01G202300 chr1D 95.074 203 9 1 492 694 446822681 446822480 3.840000e-83 318.0
29 TraesCS6B01G202300 chr1D 91.071 56 4 1 436 491 59627253 59627199 9.190000e-10 75.0
30 TraesCS6B01G202300 chr3B 96.000 175 6 1 520 694 761843739 761843912 1.400000e-72 283.0
31 TraesCS6B01G202300 chr3B 94.393 107 6 0 373 479 425232192 425232298 5.300000e-37 165.0
32 TraesCS6B01G202300 chr3B 91.667 48 4 0 18 65 429345186 429345233 1.540000e-07 67.6
33 TraesCS6B01G202300 chr6A 90.500 200 10 7 496 692 219208135 219207942 3.060000e-64 255.0
34 TraesCS6B01G202300 chrUn 89.583 144 14 1 498 641 187223247 187223389 5.260000e-42 182.0
35 TraesCS6B01G202300 chr5D 77.700 287 39 15 217 486 51062639 51062361 4.130000e-33 152.0
36 TraesCS6B01G202300 chr2D 77.477 222 37 8 216 428 204094726 204094943 1.160000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G202300 chr6B 246982645 246985040 2395 False 4425 4425 100.0000 1 2396 1 chr6B.!!$F2 2395
1 TraesCS6B01G202300 chr6B 420862204 420863853 1649 False 2484 2484 93.8550 744 2396 1 chr6B.!!$F3 1652
2 TraesCS6B01G202300 chr6B 647357039 647357545 506 False 817 817 96.2520 1 492 1 chr6B.!!$F4 491
3 TraesCS6B01G202300 chr2A 395709077 395710742 1665 True 2819 2819 97.0850 717 2396 1 chr2A.!!$R3 1679
4 TraesCS6B01G202300 chr2A 166816670 166818341 1671 True 2639 2639 95.1160 718 2396 1 chr2A.!!$R2 1678
5 TraesCS6B01G202300 chr2A 136482361 136482866 505 True 815 815 96.2450 1 491 1 chr2A.!!$R1 490
6 TraesCS6B01G202300 chr7B 257652464 257654135 1671 False 2673 2673 95.4730 718 2396 1 chr7B.!!$F1 1678
7 TraesCS6B01G202300 chr5B 47321453 47328170 6717 True 2623 2651 94.9915 725 2396 2 chr5B.!!$R1 1671
8 TraesCS6B01G202300 chr7A 299311715 299313386 1671 True 2645 2645 95.1760 718 2396 1 chr7A.!!$R1 1678
9 TraesCS6B01G202300 chr5A 484830714 484832372 1658 False 2643 2643 95.3780 731 2396 1 chr5A.!!$F1 1665
10 TraesCS6B01G202300 chr1A 546232097 546233779 1682 False 2641 2641 94.9230 703 2396 1 chr1A.!!$F1 1693
11 TraesCS6B01G202300 chr1B 526807644 526809308 1664 False 2540 2540 94.0690 711 2396 1 chr1B.!!$F2 1685
12 TraesCS6B01G202300 chr1B 465393247 465393752 505 False 822 822 96.4500 1 492 1 chr1B.!!$F1 491
13 TraesCS6B01G202300 chr4A 98867853 98868357 504 False 776 776 94.8620 1 491 1 chr4A.!!$F1 490

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
506 522 0.250553 CCTGTACCGGGAACTGCAAA 60.251 55.0 6.32 0.0 29.82 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2078 2113 2.030805 GCTTTTTGACACTCAAGCGGAT 60.031 45.455 0.0 0.0 37.7 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
501 517 3.007323 GGGCCTGTACCGGGAACT 61.007 66.667 6.32 0.00 29.82 3.01
502 518 2.267961 GGCCTGTACCGGGAACTG 59.732 66.667 6.32 7.76 29.82 3.16
503 519 2.436115 GCCTGTACCGGGAACTGC 60.436 66.667 6.32 7.41 29.82 4.40
504 520 3.065306 CCTGTACCGGGAACTGCA 58.935 61.111 6.32 0.00 29.82 4.41
505 521 1.373435 CCTGTACCGGGAACTGCAA 59.627 57.895 6.32 0.00 29.82 4.08
506 522 0.250553 CCTGTACCGGGAACTGCAAA 60.251 55.000 6.32 0.00 29.82 3.68
507 523 1.613255 CCTGTACCGGGAACTGCAAAT 60.613 52.381 6.32 0.00 29.82 2.32
508 524 1.468520 CTGTACCGGGAACTGCAAATG 59.531 52.381 6.32 0.00 0.00 2.32
509 525 1.072489 TGTACCGGGAACTGCAAATGA 59.928 47.619 6.32 0.00 0.00 2.57
510 526 2.290641 TGTACCGGGAACTGCAAATGAT 60.291 45.455 6.32 0.00 0.00 2.45
511 527 2.799126 ACCGGGAACTGCAAATGATA 57.201 45.000 6.32 0.00 0.00 2.15
512 528 3.297134 ACCGGGAACTGCAAATGATAT 57.703 42.857 6.32 0.00 0.00 1.63
513 529 3.214328 ACCGGGAACTGCAAATGATATC 58.786 45.455 6.32 0.00 0.00 1.63
514 530 3.117888 ACCGGGAACTGCAAATGATATCT 60.118 43.478 6.32 0.00 0.00 1.98
515 531 3.885297 CCGGGAACTGCAAATGATATCTT 59.115 43.478 3.98 0.00 0.00 2.40
516 532 4.261322 CCGGGAACTGCAAATGATATCTTG 60.261 45.833 3.98 2.44 0.00 3.02
517 533 4.261322 CGGGAACTGCAAATGATATCTTGG 60.261 45.833 3.98 0.00 0.00 3.61
518 534 4.038402 GGGAACTGCAAATGATATCTTGGG 59.962 45.833 3.98 0.00 0.00 4.12
519 535 4.646492 GGAACTGCAAATGATATCTTGGGT 59.354 41.667 3.98 0.00 0.00 4.51
520 536 5.127682 GGAACTGCAAATGATATCTTGGGTT 59.872 40.000 3.98 0.94 0.00 4.11
521 537 6.351286 GGAACTGCAAATGATATCTTGGGTTT 60.351 38.462 3.98 0.00 0.00 3.27
522 538 6.610075 ACTGCAAATGATATCTTGGGTTTT 57.390 33.333 3.98 0.00 0.00 2.43
523 539 7.716799 ACTGCAAATGATATCTTGGGTTTTA 57.283 32.000 3.98 0.00 0.00 1.52
524 540 8.133024 ACTGCAAATGATATCTTGGGTTTTAA 57.867 30.769 3.98 0.00 0.00 1.52
525 541 8.034804 ACTGCAAATGATATCTTGGGTTTTAAC 58.965 33.333 3.98 0.00 0.00 2.01
542 558 6.943981 GTTTTAACCAGCTGATTCAAAAACC 58.056 36.000 17.39 1.21 32.26 3.27
543 559 5.860941 TTAACCAGCTGATTCAAAAACCA 57.139 34.783 17.39 0.00 0.00 3.67
544 560 4.751767 AACCAGCTGATTCAAAAACCAA 57.248 36.364 17.39 0.00 0.00 3.67
545 561 4.326504 ACCAGCTGATTCAAAAACCAAG 57.673 40.909 17.39 0.00 0.00 3.61
546 562 3.070015 ACCAGCTGATTCAAAAACCAAGG 59.930 43.478 17.39 0.00 0.00 3.61
547 563 3.321682 CCAGCTGATTCAAAAACCAAGGA 59.678 43.478 17.39 0.00 0.00 3.36
548 564 4.202243 CCAGCTGATTCAAAAACCAAGGAA 60.202 41.667 17.39 0.00 0.00 3.36
549 565 4.986659 CAGCTGATTCAAAAACCAAGGAAG 59.013 41.667 8.42 0.00 0.00 3.46
550 566 4.895297 AGCTGATTCAAAAACCAAGGAAGA 59.105 37.500 0.00 0.00 0.00 2.87
551 567 4.984785 GCTGATTCAAAAACCAAGGAAGAC 59.015 41.667 0.00 0.00 0.00 3.01
552 568 5.451798 GCTGATTCAAAAACCAAGGAAGACA 60.452 40.000 0.00 0.00 0.00 3.41
553 569 6.147864 TGATTCAAAAACCAAGGAAGACAG 57.852 37.500 0.00 0.00 0.00 3.51
554 570 5.890985 TGATTCAAAAACCAAGGAAGACAGA 59.109 36.000 0.00 0.00 0.00 3.41
555 571 6.550854 TGATTCAAAAACCAAGGAAGACAGAT 59.449 34.615 0.00 0.00 0.00 2.90
556 572 6.790232 TTCAAAAACCAAGGAAGACAGATT 57.210 33.333 0.00 0.00 0.00 2.40
557 573 7.889873 TTCAAAAACCAAGGAAGACAGATTA 57.110 32.000 0.00 0.00 0.00 1.75
558 574 7.272037 TCAAAAACCAAGGAAGACAGATTAC 57.728 36.000 0.00 0.00 0.00 1.89
559 575 6.831353 TCAAAAACCAAGGAAGACAGATTACA 59.169 34.615 0.00 0.00 0.00 2.41
560 576 6.884280 AAAACCAAGGAAGACAGATTACAG 57.116 37.500 0.00 0.00 0.00 2.74
561 577 5.825593 AACCAAGGAAGACAGATTACAGA 57.174 39.130 0.00 0.00 0.00 3.41
562 578 6.380079 AACCAAGGAAGACAGATTACAGAT 57.620 37.500 0.00 0.00 0.00 2.90
563 579 5.738909 ACCAAGGAAGACAGATTACAGATG 58.261 41.667 0.00 0.00 0.00 2.90
564 580 4.574013 CCAAGGAAGACAGATTACAGATGC 59.426 45.833 0.00 0.00 0.00 3.91
565 581 5.426504 CAAGGAAGACAGATTACAGATGCT 58.573 41.667 0.00 0.00 0.00 3.79
566 582 5.690464 AGGAAGACAGATTACAGATGCTT 57.310 39.130 0.00 0.00 0.00 3.91
567 583 5.669477 AGGAAGACAGATTACAGATGCTTC 58.331 41.667 0.00 0.00 31.83 3.86
568 584 5.188555 AGGAAGACAGATTACAGATGCTTCA 59.811 40.000 0.00 0.00 33.05 3.02
569 585 5.523188 GGAAGACAGATTACAGATGCTTCAG 59.477 44.000 0.00 0.00 33.05 3.02
570 586 5.674052 AGACAGATTACAGATGCTTCAGT 57.326 39.130 2.07 2.67 0.00 3.41
571 587 6.047511 AGACAGATTACAGATGCTTCAGTT 57.952 37.500 2.97 0.00 0.00 3.16
572 588 6.105333 AGACAGATTACAGATGCTTCAGTTC 58.895 40.000 2.97 0.00 0.00 3.01
573 589 6.047511 ACAGATTACAGATGCTTCAGTTCT 57.952 37.500 2.97 0.00 0.00 3.01
574 590 5.873712 ACAGATTACAGATGCTTCAGTTCTG 59.126 40.000 17.80 17.80 42.05 3.02
576 592 6.370994 CAGATTACAGATGCTTCAGTTCTGTT 59.629 38.462 15.40 4.07 45.88 3.16
577 593 6.593382 AGATTACAGATGCTTCAGTTCTGTTC 59.407 38.462 15.40 10.40 45.88 3.18
578 594 3.406764 ACAGATGCTTCAGTTCTGTTCC 58.593 45.455 2.07 0.00 45.88 3.62
579 595 3.181451 ACAGATGCTTCAGTTCTGTTCCA 60.181 43.478 2.07 0.00 45.88 3.53
580 596 3.188048 CAGATGCTTCAGTTCTGTTCCAC 59.812 47.826 2.07 0.00 33.72 4.02
581 597 3.072184 AGATGCTTCAGTTCTGTTCCACT 59.928 43.478 2.07 0.00 0.00 4.00
582 598 2.564771 TGCTTCAGTTCTGTTCCACTG 58.435 47.619 0.00 0.00 41.65 3.66
583 599 2.092968 TGCTTCAGTTCTGTTCCACTGT 60.093 45.455 0.00 0.00 41.16 3.55
584 600 3.133901 TGCTTCAGTTCTGTTCCACTGTA 59.866 43.478 0.00 0.00 41.16 2.74
585 601 4.202357 TGCTTCAGTTCTGTTCCACTGTAT 60.202 41.667 0.00 0.00 41.16 2.29
586 602 4.153117 GCTTCAGTTCTGTTCCACTGTATG 59.847 45.833 0.00 0.00 41.16 2.39
587 603 4.955811 TCAGTTCTGTTCCACTGTATGT 57.044 40.909 0.00 0.00 41.16 2.29
588 604 5.290493 TCAGTTCTGTTCCACTGTATGTT 57.710 39.130 0.00 0.00 41.16 2.71
589 605 5.680619 TCAGTTCTGTTCCACTGTATGTTT 58.319 37.500 0.00 0.00 41.16 2.83
590 606 5.758296 TCAGTTCTGTTCCACTGTATGTTTC 59.242 40.000 0.00 0.00 41.16 2.78
591 607 5.049405 CAGTTCTGTTCCACTGTATGTTTCC 60.049 44.000 0.00 0.00 36.44 3.13
592 608 4.974645 TCTGTTCCACTGTATGTTTCCT 57.025 40.909 0.00 0.00 0.00 3.36
593 609 4.641396 TCTGTTCCACTGTATGTTTCCTG 58.359 43.478 0.00 0.00 0.00 3.86
594 610 3.146066 TGTTCCACTGTATGTTTCCTGC 58.854 45.455 0.00 0.00 0.00 4.85
595 611 3.146066 GTTCCACTGTATGTTTCCTGCA 58.854 45.455 0.00 0.00 0.00 4.41
596 612 3.719268 TCCACTGTATGTTTCCTGCAT 57.281 42.857 0.00 0.00 0.00 3.96
597 613 4.835284 TCCACTGTATGTTTCCTGCATA 57.165 40.909 0.00 0.00 0.00 3.14
598 614 4.513442 TCCACTGTATGTTTCCTGCATAC 58.487 43.478 8.10 8.10 45.22 2.39
604 620 5.143916 GTATGTTTCCTGCATACAGTTCG 57.856 43.478 9.69 0.00 44.69 3.95
605 621 3.120321 TGTTTCCTGCATACAGTTCGT 57.880 42.857 0.00 0.00 42.81 3.85
606 622 4.260139 TGTTTCCTGCATACAGTTCGTA 57.740 40.909 0.00 0.00 42.81 3.43
607 623 4.827692 TGTTTCCTGCATACAGTTCGTAT 58.172 39.130 0.00 0.00 42.81 3.06
617 633 3.152261 ACAGTTCGTATGCAGCTCTAC 57.848 47.619 0.00 0.00 0.00 2.59
618 634 2.755655 ACAGTTCGTATGCAGCTCTACT 59.244 45.455 0.00 0.00 0.00 2.57
619 635 3.945921 ACAGTTCGTATGCAGCTCTACTA 59.054 43.478 0.00 0.00 0.00 1.82
620 636 4.201930 ACAGTTCGTATGCAGCTCTACTAC 60.202 45.833 0.00 0.00 0.00 2.73
621 637 3.315749 AGTTCGTATGCAGCTCTACTACC 59.684 47.826 0.00 0.00 0.00 3.18
622 638 2.228059 TCGTATGCAGCTCTACTACCC 58.772 52.381 0.00 0.00 0.00 3.69
623 639 2.158652 TCGTATGCAGCTCTACTACCCT 60.159 50.000 0.00 0.00 0.00 4.34
624 640 2.030717 CGTATGCAGCTCTACTACCCTG 60.031 54.545 0.00 0.00 0.00 4.45
625 641 2.166907 ATGCAGCTCTACTACCCTGT 57.833 50.000 0.00 0.00 0.00 4.00
626 642 2.820728 TGCAGCTCTACTACCCTGTA 57.179 50.000 0.00 0.00 0.00 2.74
627 643 3.095912 TGCAGCTCTACTACCCTGTAA 57.904 47.619 0.00 0.00 0.00 2.41
628 644 3.643237 TGCAGCTCTACTACCCTGTAAT 58.357 45.455 0.00 0.00 0.00 1.89
629 645 4.030913 TGCAGCTCTACTACCCTGTAATT 58.969 43.478 0.00 0.00 0.00 1.40
630 646 4.469945 TGCAGCTCTACTACCCTGTAATTT 59.530 41.667 0.00 0.00 0.00 1.82
631 647 5.045869 TGCAGCTCTACTACCCTGTAATTTT 60.046 40.000 0.00 0.00 0.00 1.82
632 648 5.880887 GCAGCTCTACTACCCTGTAATTTTT 59.119 40.000 0.00 0.00 0.00 1.94
654 670 7.790823 TTTTAGAAACACCTTGTACTACACC 57.209 36.000 0.00 0.00 0.00 4.16
655 671 4.347360 AGAAACACCTTGTACTACACCC 57.653 45.455 0.00 0.00 0.00 4.61
656 672 3.072038 AGAAACACCTTGTACTACACCCC 59.928 47.826 0.00 0.00 0.00 4.95
657 673 2.410790 ACACCTTGTACTACACCCCT 57.589 50.000 0.00 0.00 0.00 4.79
658 674 2.697967 ACACCTTGTACTACACCCCTT 58.302 47.619 0.00 0.00 0.00 3.95
659 675 2.636403 ACACCTTGTACTACACCCCTTC 59.364 50.000 0.00 0.00 0.00 3.46
660 676 2.904434 CACCTTGTACTACACCCCTTCT 59.096 50.000 0.00 0.00 0.00 2.85
661 677 3.326880 CACCTTGTACTACACCCCTTCTT 59.673 47.826 0.00 0.00 0.00 2.52
662 678 3.581770 ACCTTGTACTACACCCCTTCTTC 59.418 47.826 0.00 0.00 0.00 2.87
663 679 3.581332 CCTTGTACTACACCCCTTCTTCA 59.419 47.826 0.00 0.00 0.00 3.02
664 680 4.225267 CCTTGTACTACACCCCTTCTTCAT 59.775 45.833 0.00 0.00 0.00 2.57
665 681 4.819105 TGTACTACACCCCTTCTTCATG 57.181 45.455 0.00 0.00 0.00 3.07
666 682 4.422057 TGTACTACACCCCTTCTTCATGA 58.578 43.478 0.00 0.00 0.00 3.07
667 683 4.841813 TGTACTACACCCCTTCTTCATGAA 59.158 41.667 8.12 8.12 0.00 2.57
668 684 5.487488 TGTACTACACCCCTTCTTCATGAAT 59.513 40.000 8.96 0.00 33.71 2.57
669 685 4.848357 ACTACACCCCTTCTTCATGAATG 58.152 43.478 8.96 5.03 33.71 2.67
670 686 4.536090 ACTACACCCCTTCTTCATGAATGA 59.464 41.667 8.96 6.08 33.71 2.57
671 687 4.387026 ACACCCCTTCTTCATGAATGAA 57.613 40.909 8.96 13.00 43.94 2.57
672 688 4.739793 ACACCCCTTCTTCATGAATGAAA 58.260 39.130 8.96 3.52 45.26 2.69
673 689 5.147032 ACACCCCTTCTTCATGAATGAAAA 58.853 37.500 8.96 1.11 45.26 2.29
674 690 5.244626 ACACCCCTTCTTCATGAATGAAAAG 59.755 40.000 8.96 10.07 45.26 2.27
675 691 4.221482 ACCCCTTCTTCATGAATGAAAAGC 59.779 41.667 8.96 0.00 45.26 3.51
676 692 4.382362 CCCCTTCTTCATGAATGAAAAGCC 60.382 45.833 8.96 0.00 45.26 4.35
677 693 4.221262 CCCTTCTTCATGAATGAAAAGCCA 59.779 41.667 8.96 0.00 45.26 4.75
678 694 5.279607 CCCTTCTTCATGAATGAAAAGCCAA 60.280 40.000 8.96 0.00 45.26 4.52
679 695 6.403878 CCTTCTTCATGAATGAAAAGCCAAT 58.596 36.000 8.96 0.00 45.26 3.16
680 696 6.534079 CCTTCTTCATGAATGAAAAGCCAATC 59.466 38.462 8.96 0.00 45.26 2.67
681 697 6.845758 TCTTCATGAATGAAAAGCCAATCT 57.154 33.333 8.96 0.00 45.26 2.40
682 698 6.627243 TCTTCATGAATGAAAAGCCAATCTG 58.373 36.000 8.96 0.00 45.26 2.90
683 699 5.333299 TCATGAATGAAAAGCCAATCTGG 57.667 39.130 0.00 0.00 35.57 3.86
698 714 5.114081 CCAATCTGGCATTTTCATCTTTCC 58.886 41.667 0.00 0.00 0.00 3.13
699 715 5.114081 CAATCTGGCATTTTCATCTTTCCC 58.886 41.667 0.00 0.00 0.00 3.97
700 716 4.051661 TCTGGCATTTTCATCTTTCCCT 57.948 40.909 0.00 0.00 0.00 4.20
701 717 5.191727 TCTGGCATTTTCATCTTTCCCTA 57.808 39.130 0.00 0.00 0.00 3.53
702 718 5.579047 TCTGGCATTTTCATCTTTCCCTAA 58.421 37.500 0.00 0.00 0.00 2.69
703 719 6.197168 TCTGGCATTTTCATCTTTCCCTAAT 58.803 36.000 0.00 0.00 0.00 1.73
704 720 6.322201 TCTGGCATTTTCATCTTTCCCTAATC 59.678 38.462 0.00 0.00 0.00 1.75
705 721 6.197168 TGGCATTTTCATCTTTCCCTAATCT 58.803 36.000 0.00 0.00 0.00 2.40
706 722 6.322201 TGGCATTTTCATCTTTCCCTAATCTC 59.678 38.462 0.00 0.00 0.00 2.75
707 723 6.548993 GGCATTTTCATCTTTCCCTAATCTCT 59.451 38.462 0.00 0.00 0.00 3.10
708 724 7.721399 GGCATTTTCATCTTTCCCTAATCTCTA 59.279 37.037 0.00 0.00 0.00 2.43
709 725 8.563732 GCATTTTCATCTTTCCCTAATCTCTAC 58.436 37.037 0.00 0.00 0.00 2.59
710 726 9.061435 CATTTTCATCTTTCCCTAATCTCTACC 57.939 37.037 0.00 0.00 0.00 3.18
711 727 7.996758 TTTCATCTTTCCCTAATCTCTACCT 57.003 36.000 0.00 0.00 0.00 3.08
712 728 9.502035 TTTTCATCTTTCCCTAATCTCTACCTA 57.498 33.333 0.00 0.00 0.00 3.08
713 729 8.480133 TTCATCTTTCCCTAATCTCTACCTAC 57.520 38.462 0.00 0.00 0.00 3.18
714 730 7.827787 TCATCTTTCCCTAATCTCTACCTACT 58.172 38.462 0.00 0.00 0.00 2.57
715 731 8.956860 TCATCTTTCCCTAATCTCTACCTACTA 58.043 37.037 0.00 0.00 0.00 1.82
716 732 9.589461 CATCTTTCCCTAATCTCTACCTACTAA 57.411 37.037 0.00 0.00 0.00 2.24
718 734 9.810870 TCTTTCCCTAATCTCTACCTACTAATC 57.189 37.037 0.00 0.00 0.00 1.75
719 735 9.816787 CTTTCCCTAATCTCTACCTACTAATCT 57.183 37.037 0.00 0.00 0.00 2.40
722 738 8.834733 TCCCTAATCTCTACCTACTAATCTACC 58.165 40.741 0.00 0.00 0.00 3.18
810 826 4.599047 TTTCTTTGAAATCAACCCGCAT 57.401 36.364 0.00 0.00 35.28 4.73
981 997 1.137675 CTCTCGCCCATGAAGTCATCA 59.862 52.381 0.00 0.00 43.67 3.07
1425 1447 6.701400 ACATTAATCCAAGCAACTGTTTTCAC 59.299 34.615 0.00 0.00 0.00 3.18
1669 1703 5.478233 TCCAAATACGCACACATTATGTC 57.522 39.130 0.00 0.00 40.64 3.06
1828 1862 7.597369 ACTTATTTTGCCGGTTCTCAATAAAAC 59.403 33.333 1.90 0.00 0.00 2.43
1977 2011 2.045242 TCGGTCGCTCTGCCTACT 60.045 61.111 0.00 0.00 0.00 2.57
1980 2014 1.890894 GGTCGCTCTGCCTACTGAA 59.109 57.895 0.00 0.00 0.00 3.02
2078 2113 4.257731 TCTTGCAGTCGCCAATACAAATA 58.742 39.130 0.00 0.00 37.32 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
492 508 2.799126 TATCATTTGCAGTTCCCGGT 57.201 45.000 0.00 0.00 0.00 5.28
493 509 3.480470 AGATATCATTTGCAGTTCCCGG 58.520 45.455 5.32 0.00 0.00 5.73
494 510 4.261322 CCAAGATATCATTTGCAGTTCCCG 60.261 45.833 5.32 0.00 0.00 5.14
495 511 4.038402 CCCAAGATATCATTTGCAGTTCCC 59.962 45.833 5.32 0.00 0.00 3.97
496 512 4.646492 ACCCAAGATATCATTTGCAGTTCC 59.354 41.667 5.32 0.00 0.00 3.62
497 513 5.841957 ACCCAAGATATCATTTGCAGTTC 57.158 39.130 5.32 0.00 0.00 3.01
498 514 6.610075 AAACCCAAGATATCATTTGCAGTT 57.390 33.333 5.32 5.73 0.00 3.16
499 515 6.610075 AAAACCCAAGATATCATTTGCAGT 57.390 33.333 5.32 0.13 0.00 4.40
500 516 7.492344 GGTTAAAACCCAAGATATCATTTGCAG 59.508 37.037 5.32 0.00 43.43 4.41
501 517 7.327214 GGTTAAAACCCAAGATATCATTTGCA 58.673 34.615 5.32 0.00 43.43 4.08
502 518 7.770801 GGTTAAAACCCAAGATATCATTTGC 57.229 36.000 5.32 0.00 43.43 3.68
517 533 8.326861 TGGTTTTTGAATCAGCTGGTTAAAACC 61.327 37.037 36.52 36.52 46.69 3.27
518 534 6.536941 TGGTTTTTGAATCAGCTGGTTAAAAC 59.463 34.615 27.80 27.80 34.94 2.43
519 535 6.644347 TGGTTTTTGAATCAGCTGGTTAAAA 58.356 32.000 16.97 16.97 0.00 1.52
520 536 6.227298 TGGTTTTTGAATCAGCTGGTTAAA 57.773 33.333 13.36 9.12 0.00 1.52
521 537 5.860941 TGGTTTTTGAATCAGCTGGTTAA 57.139 34.783 13.36 1.24 0.00 2.01
522 538 5.221422 CCTTGGTTTTTGAATCAGCTGGTTA 60.221 40.000 13.36 0.00 0.00 2.85
523 539 4.443315 CCTTGGTTTTTGAATCAGCTGGTT 60.443 41.667 13.24 13.24 0.00 3.67
524 540 3.070015 CCTTGGTTTTTGAATCAGCTGGT 59.930 43.478 15.13 2.68 0.00 4.00
525 541 3.321682 TCCTTGGTTTTTGAATCAGCTGG 59.678 43.478 15.13 0.00 0.00 4.85
526 542 4.589216 TCCTTGGTTTTTGAATCAGCTG 57.411 40.909 7.63 7.63 0.00 4.24
527 543 4.895297 TCTTCCTTGGTTTTTGAATCAGCT 59.105 37.500 0.00 0.00 0.00 4.24
528 544 4.984785 GTCTTCCTTGGTTTTTGAATCAGC 59.015 41.667 0.00 0.00 0.00 4.26
529 545 6.039717 TCTGTCTTCCTTGGTTTTTGAATCAG 59.960 38.462 0.00 0.00 0.00 2.90
530 546 5.890985 TCTGTCTTCCTTGGTTTTTGAATCA 59.109 36.000 0.00 0.00 0.00 2.57
531 547 6.391227 TCTGTCTTCCTTGGTTTTTGAATC 57.609 37.500 0.00 0.00 0.00 2.52
532 548 6.983906 ATCTGTCTTCCTTGGTTTTTGAAT 57.016 33.333 0.00 0.00 0.00 2.57
533 549 6.790232 AATCTGTCTTCCTTGGTTTTTGAA 57.210 33.333 0.00 0.00 0.00 2.69
534 550 6.831353 TGTAATCTGTCTTCCTTGGTTTTTGA 59.169 34.615 0.00 0.00 0.00 2.69
535 551 7.013274 TCTGTAATCTGTCTTCCTTGGTTTTTG 59.987 37.037 0.00 0.00 0.00 2.44
536 552 7.060421 TCTGTAATCTGTCTTCCTTGGTTTTT 58.940 34.615 0.00 0.00 0.00 1.94
537 553 6.601332 TCTGTAATCTGTCTTCCTTGGTTTT 58.399 36.000 0.00 0.00 0.00 2.43
538 554 6.187727 TCTGTAATCTGTCTTCCTTGGTTT 57.812 37.500 0.00 0.00 0.00 3.27
539 555 5.825593 TCTGTAATCTGTCTTCCTTGGTT 57.174 39.130 0.00 0.00 0.00 3.67
540 556 5.738909 CATCTGTAATCTGTCTTCCTTGGT 58.261 41.667 0.00 0.00 0.00 3.67
541 557 4.574013 GCATCTGTAATCTGTCTTCCTTGG 59.426 45.833 0.00 0.00 0.00 3.61
542 558 5.426504 AGCATCTGTAATCTGTCTTCCTTG 58.573 41.667 0.00 0.00 0.00 3.61
543 559 5.690464 AGCATCTGTAATCTGTCTTCCTT 57.310 39.130 0.00 0.00 0.00 3.36
544 560 5.188555 TGAAGCATCTGTAATCTGTCTTCCT 59.811 40.000 0.00 0.00 0.00 3.36
545 561 5.423015 TGAAGCATCTGTAATCTGTCTTCC 58.577 41.667 0.00 0.00 0.00 3.46
546 562 6.105333 ACTGAAGCATCTGTAATCTGTCTTC 58.895 40.000 0.00 0.00 36.14 2.87
547 563 6.047511 ACTGAAGCATCTGTAATCTGTCTT 57.952 37.500 0.00 0.00 36.14 3.01
548 564 5.674052 ACTGAAGCATCTGTAATCTGTCT 57.326 39.130 0.00 0.00 36.14 3.41
549 565 6.035866 CAGAACTGAAGCATCTGTAATCTGTC 59.964 42.308 16.37 5.65 37.47 3.51
550 566 5.873712 CAGAACTGAAGCATCTGTAATCTGT 59.126 40.000 16.37 0.00 37.47 3.41
551 567 6.347270 CAGAACTGAAGCATCTGTAATCTG 57.653 41.667 12.98 12.98 36.70 2.90
558 574 3.188048 GTGGAACAGAACTGAAGCATCTG 59.812 47.826 8.87 10.56 41.80 2.90
559 575 3.072184 AGTGGAACAGAACTGAAGCATCT 59.928 43.478 8.87 0.00 41.80 2.90
560 576 3.188048 CAGTGGAACAGAACTGAAGCATC 59.812 47.826 8.87 0.00 45.43 3.91
561 577 3.144506 CAGTGGAACAGAACTGAAGCAT 58.855 45.455 8.87 0.00 45.43 3.79
562 578 2.092968 ACAGTGGAACAGAACTGAAGCA 60.093 45.455 9.63 0.00 45.43 3.91
563 579 2.565841 ACAGTGGAACAGAACTGAAGC 58.434 47.619 9.63 0.00 45.43 3.86
564 580 5.300752 ACATACAGTGGAACAGAACTGAAG 58.699 41.667 9.63 2.18 45.43 3.02
565 581 5.290493 ACATACAGTGGAACAGAACTGAA 57.710 39.130 9.63 0.00 45.43 3.02
566 582 4.955811 ACATACAGTGGAACAGAACTGA 57.044 40.909 9.63 0.00 45.43 3.41
568 584 5.063880 GGAAACATACAGTGGAACAGAACT 58.936 41.667 0.00 0.00 41.80 3.01
569 585 5.049405 CAGGAAACATACAGTGGAACAGAAC 60.049 44.000 0.00 0.00 41.80 3.01
570 586 5.063204 CAGGAAACATACAGTGGAACAGAA 58.937 41.667 0.00 0.00 41.80 3.02
571 587 4.641396 CAGGAAACATACAGTGGAACAGA 58.359 43.478 0.00 0.00 41.80 3.41
572 588 3.189287 GCAGGAAACATACAGTGGAACAG 59.811 47.826 0.00 0.00 41.80 3.16
573 589 3.146066 GCAGGAAACATACAGTGGAACA 58.854 45.455 0.00 0.00 41.43 3.18
574 590 3.146066 TGCAGGAAACATACAGTGGAAC 58.854 45.455 0.00 0.00 0.00 3.62
575 591 3.500448 TGCAGGAAACATACAGTGGAA 57.500 42.857 0.00 0.00 0.00 3.53
576 592 3.719268 ATGCAGGAAACATACAGTGGA 57.281 42.857 0.00 0.00 0.00 4.02
577 593 4.882671 GTATGCAGGAAACATACAGTGG 57.117 45.455 8.61 0.00 45.96 4.00
582 598 4.630069 ACGAACTGTATGCAGGAAACATAC 59.370 41.667 15.65 6.90 46.56 2.39
583 599 4.827692 ACGAACTGTATGCAGGAAACATA 58.172 39.130 15.65 0.00 46.62 2.29
584 600 3.674997 ACGAACTGTATGCAGGAAACAT 58.325 40.909 15.65 0.00 46.62 2.71
585 601 3.120321 ACGAACTGTATGCAGGAAACA 57.880 42.857 15.65 0.00 46.62 2.83
595 611 4.580995 AGTAGAGCTGCATACGAACTGTAT 59.419 41.667 1.02 0.00 44.73 2.29
596 612 3.945921 AGTAGAGCTGCATACGAACTGTA 59.054 43.478 1.02 0.00 37.49 2.74
597 613 2.755655 AGTAGAGCTGCATACGAACTGT 59.244 45.455 1.02 0.00 0.00 3.55
598 614 3.428746 AGTAGAGCTGCATACGAACTG 57.571 47.619 1.02 0.00 0.00 3.16
599 615 3.315749 GGTAGTAGAGCTGCATACGAACT 59.684 47.826 1.02 5.38 0.00 3.01
600 616 3.550436 GGGTAGTAGAGCTGCATACGAAC 60.550 52.174 1.02 3.68 0.00 3.95
601 617 2.621998 GGGTAGTAGAGCTGCATACGAA 59.378 50.000 1.02 0.00 0.00 3.85
602 618 2.158652 AGGGTAGTAGAGCTGCATACGA 60.159 50.000 1.02 0.00 0.00 3.43
603 619 2.030717 CAGGGTAGTAGAGCTGCATACG 60.031 54.545 1.02 0.00 0.00 3.06
604 620 2.959707 ACAGGGTAGTAGAGCTGCATAC 59.040 50.000 1.02 4.66 0.00 2.39
605 621 3.314307 ACAGGGTAGTAGAGCTGCATA 57.686 47.619 1.02 0.00 0.00 3.14
606 622 2.166907 ACAGGGTAGTAGAGCTGCAT 57.833 50.000 1.02 0.00 0.00 3.96
607 623 2.820728 TACAGGGTAGTAGAGCTGCA 57.179 50.000 1.02 0.00 0.00 4.41
608 624 4.674281 AATTACAGGGTAGTAGAGCTGC 57.326 45.455 0.00 0.00 0.00 5.25
629 645 7.282901 GGGTGTAGTACAAGGTGTTTCTAAAAA 59.717 37.037 4.11 0.00 0.00 1.94
630 646 6.767423 GGGTGTAGTACAAGGTGTTTCTAAAA 59.233 38.462 4.11 0.00 0.00 1.52
631 647 6.290605 GGGTGTAGTACAAGGTGTTTCTAAA 58.709 40.000 4.11 0.00 0.00 1.85
632 648 5.221702 GGGGTGTAGTACAAGGTGTTTCTAA 60.222 44.000 4.11 0.00 0.00 2.10
633 649 4.284234 GGGGTGTAGTACAAGGTGTTTCTA 59.716 45.833 4.11 0.00 0.00 2.10
634 650 3.072038 GGGGTGTAGTACAAGGTGTTTCT 59.928 47.826 4.11 0.00 0.00 2.52
635 651 3.072038 AGGGGTGTAGTACAAGGTGTTTC 59.928 47.826 4.11 0.00 0.00 2.78
636 652 3.050835 AGGGGTGTAGTACAAGGTGTTT 58.949 45.455 4.11 0.00 0.00 2.83
637 653 2.697967 AGGGGTGTAGTACAAGGTGTT 58.302 47.619 4.11 0.00 0.00 3.32
638 654 2.410790 AGGGGTGTAGTACAAGGTGT 57.589 50.000 4.11 0.00 0.00 4.16
639 655 2.904434 AGAAGGGGTGTAGTACAAGGTG 59.096 50.000 4.11 0.00 0.00 4.00
640 656 3.271153 AGAAGGGGTGTAGTACAAGGT 57.729 47.619 4.11 0.00 0.00 3.50
641 657 3.581332 TGAAGAAGGGGTGTAGTACAAGG 59.419 47.826 4.11 0.00 0.00 3.61
642 658 4.884668 TGAAGAAGGGGTGTAGTACAAG 57.115 45.455 4.11 0.00 0.00 3.16
643 659 4.841813 TCATGAAGAAGGGGTGTAGTACAA 59.158 41.667 4.11 0.00 0.00 2.41
644 660 4.422057 TCATGAAGAAGGGGTGTAGTACA 58.578 43.478 0.00 0.00 0.00 2.90
645 661 5.416271 TTCATGAAGAAGGGGTGTAGTAC 57.584 43.478 3.38 0.00 0.00 2.73
646 662 5.724370 TCATTCATGAAGAAGGGGTGTAGTA 59.276 40.000 14.54 0.00 40.15 1.82
647 663 4.536090 TCATTCATGAAGAAGGGGTGTAGT 59.464 41.667 14.54 0.00 40.15 2.73
648 664 5.102953 TCATTCATGAAGAAGGGGTGTAG 57.897 43.478 14.54 0.00 40.15 2.74
649 665 5.512942 TTCATTCATGAAGAAGGGGTGTA 57.487 39.130 14.54 0.00 41.51 2.90
650 666 4.387026 TTCATTCATGAAGAAGGGGTGT 57.613 40.909 14.54 0.00 41.51 4.16
651 667 5.717119 CTTTTCATTCATGAAGAAGGGGTG 58.283 41.667 14.54 5.51 46.34 4.61
652 668 4.221482 GCTTTTCATTCATGAAGAAGGGGT 59.779 41.667 14.54 0.00 46.34 4.95
653 669 4.382362 GGCTTTTCATTCATGAAGAAGGGG 60.382 45.833 14.54 11.07 46.34 4.79
654 670 4.221262 TGGCTTTTCATTCATGAAGAAGGG 59.779 41.667 14.54 12.91 46.34 3.95
655 671 5.395682 TGGCTTTTCATTCATGAAGAAGG 57.604 39.130 14.54 9.80 46.34 3.46
656 672 7.275779 CAGATTGGCTTTTCATTCATGAAGAAG 59.724 37.037 14.54 14.47 46.34 2.85
657 673 7.094631 CAGATTGGCTTTTCATTCATGAAGAA 58.905 34.615 14.54 13.70 46.34 2.52
658 674 6.350696 CCAGATTGGCTTTTCATTCATGAAGA 60.351 38.462 14.54 8.64 46.34 2.87
659 675 5.810587 CCAGATTGGCTTTTCATTCATGAAG 59.189 40.000 14.54 6.44 46.34 3.02
660 676 5.726397 CCAGATTGGCTTTTCATTCATGAA 58.274 37.500 11.26 11.26 44.42 2.57
661 677 5.333299 CCAGATTGGCTTTTCATTCATGA 57.667 39.130 0.00 0.00 34.44 3.07
675 691 5.114081 GGAAAGATGAAAATGCCAGATTGG 58.886 41.667 0.00 0.00 41.55 3.16
676 692 5.105064 AGGGAAAGATGAAAATGCCAGATTG 60.105 40.000 0.00 0.00 0.00 2.67
677 693 5.028131 AGGGAAAGATGAAAATGCCAGATT 58.972 37.500 0.00 0.00 0.00 2.40
678 694 4.617593 AGGGAAAGATGAAAATGCCAGAT 58.382 39.130 0.00 0.00 0.00 2.90
679 695 4.051661 AGGGAAAGATGAAAATGCCAGA 57.948 40.909 0.00 0.00 0.00 3.86
680 696 5.920193 TTAGGGAAAGATGAAAATGCCAG 57.080 39.130 0.00 0.00 0.00 4.85
681 697 6.197168 AGATTAGGGAAAGATGAAAATGCCA 58.803 36.000 0.00 0.00 0.00 4.92
682 698 6.548993 AGAGATTAGGGAAAGATGAAAATGCC 59.451 38.462 0.00 0.00 0.00 4.40
683 699 7.579761 AGAGATTAGGGAAAGATGAAAATGC 57.420 36.000 0.00 0.00 0.00 3.56
684 700 9.061435 GGTAGAGATTAGGGAAAGATGAAAATG 57.939 37.037 0.00 0.00 0.00 2.32
685 701 9.008584 AGGTAGAGATTAGGGAAAGATGAAAAT 57.991 33.333 0.00 0.00 0.00 1.82
686 702 8.393959 AGGTAGAGATTAGGGAAAGATGAAAA 57.606 34.615 0.00 0.00 0.00 2.29
687 703 7.996758 AGGTAGAGATTAGGGAAAGATGAAA 57.003 36.000 0.00 0.00 0.00 2.69
688 704 8.290277 AGTAGGTAGAGATTAGGGAAAGATGAA 58.710 37.037 0.00 0.00 0.00 2.57
689 705 7.827787 AGTAGGTAGAGATTAGGGAAAGATGA 58.172 38.462 0.00 0.00 0.00 2.92
690 706 9.589461 TTAGTAGGTAGAGATTAGGGAAAGATG 57.411 37.037 0.00 0.00 0.00 2.90
692 708 9.810870 GATTAGTAGGTAGAGATTAGGGAAAGA 57.189 37.037 0.00 0.00 0.00 2.52
693 709 9.816787 AGATTAGTAGGTAGAGATTAGGGAAAG 57.183 37.037 0.00 0.00 0.00 2.62
696 712 8.834733 GGTAGATTAGTAGGTAGAGATTAGGGA 58.165 40.741 0.00 0.00 0.00 4.20
697 713 8.054572 GGGTAGATTAGTAGGTAGAGATTAGGG 58.945 44.444 0.00 0.00 0.00 3.53
698 714 8.838741 AGGGTAGATTAGTAGGTAGAGATTAGG 58.161 40.741 0.00 0.00 0.00 2.69
701 717 9.409253 AGTAGGGTAGATTAGTAGGTAGAGATT 57.591 37.037 0.00 0.00 0.00 2.40
702 718 8.993993 AGTAGGGTAGATTAGTAGGTAGAGAT 57.006 38.462 0.00 0.00 0.00 2.75
703 719 9.904732 TTAGTAGGGTAGATTAGTAGGTAGAGA 57.095 37.037 0.00 0.00 0.00 3.10
712 728 9.377238 CCTGGTTTATTAGTAGGGTAGATTAGT 57.623 37.037 0.00 0.00 0.00 2.24
713 729 8.312564 GCCTGGTTTATTAGTAGGGTAGATTAG 58.687 40.741 0.00 0.00 0.00 1.73
714 730 7.790798 TGCCTGGTTTATTAGTAGGGTAGATTA 59.209 37.037 0.00 0.00 0.00 1.75
715 731 6.618196 TGCCTGGTTTATTAGTAGGGTAGATT 59.382 38.462 0.00 0.00 0.00 2.40
716 732 6.042897 GTGCCTGGTTTATTAGTAGGGTAGAT 59.957 42.308 0.00 0.00 0.00 1.98
717 733 5.364735 GTGCCTGGTTTATTAGTAGGGTAGA 59.635 44.000 0.00 0.00 0.00 2.59
718 734 5.608449 GTGCCTGGTTTATTAGTAGGGTAG 58.392 45.833 0.00 0.00 0.00 3.18
719 735 4.099881 CGTGCCTGGTTTATTAGTAGGGTA 59.900 45.833 0.00 0.00 0.00 3.69
720 736 3.118519 CGTGCCTGGTTTATTAGTAGGGT 60.119 47.826 0.00 0.00 0.00 4.34
721 737 3.463944 CGTGCCTGGTTTATTAGTAGGG 58.536 50.000 0.00 0.00 0.00 3.53
722 738 3.463944 CCGTGCCTGGTTTATTAGTAGG 58.536 50.000 0.00 0.00 0.00 3.18
737 753 3.291101 TACGACCAGAAGCCGTGCC 62.291 63.158 0.00 0.00 37.69 5.01
810 826 2.441750 AGAGTGCCACTTAAACAGGGAA 59.558 45.455 0.00 0.00 0.00 3.97
916 932 4.658071 CTCTGTGTGTGGTTGTGTTTTAC 58.342 43.478 0.00 0.00 0.00 2.01
1168 1190 2.214920 GGACGAACCTGGGACCACT 61.215 63.158 0.00 0.00 35.41 4.00
1512 1534 7.232737 TCACTCAATTCAGTTTAGAGAGTACCA 59.767 37.037 0.00 0.00 33.90 3.25
1669 1703 4.699735 TCATGTTTATGCCACACACTAAGG 59.300 41.667 0.00 0.00 34.21 2.69
1828 1862 2.306341 ATCACATCCTGAACTGAGCG 57.694 50.000 0.00 0.00 30.60 5.03
2078 2113 2.030805 GCTTTTTGACACTCAAGCGGAT 60.031 45.455 0.00 0.00 37.70 4.18
2130 2165 9.577110 GTACATAACTACTACAATGTAGCAACA 57.423 33.333 19.38 3.03 42.53 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.