Multiple sequence alignment - TraesCS6B01G201800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G201800 chr6B 100.000 5033 0 0 1 5033 245998240 245993208 0.000000e+00 9295.0
1 TraesCS6B01G201800 chr6B 88.053 452 29 3 4422 4849 413466900 413466450 3.480000e-141 512.0
2 TraesCS6B01G201800 chr6B 93.182 88 6 0 3688 3775 177271798 177271711 4.090000e-26 130.0
3 TraesCS6B01G201800 chr6A 95.497 2332 71 4 775 3075 187300998 187298670 0.000000e+00 3694.0
4 TraesCS6B01G201800 chr6A 85.299 619 53 23 3806 4408 187297921 187297325 5.570000e-169 604.0
5 TraesCS6B01G201800 chr6A 91.373 255 22 0 526 780 187301341 187301087 2.880000e-92 350.0
6 TraesCS6B01G201800 chr6A 94.054 185 6 2 4848 5027 187296640 187296456 4.960000e-70 276.0
7 TraesCS6B01G201800 chr6A 97.500 120 3 0 3077 3196 187298585 187298466 6.600000e-49 206.0
8 TraesCS6B01G201800 chr6D 94.191 1205 59 7 323 1518 142150901 142149699 0.000000e+00 1827.0
9 TraesCS6B01G201800 chr6D 89.515 1011 51 25 2238 3196 142148689 142147682 0.000000e+00 1229.0
10 TraesCS6B01G201800 chr6D 85.468 523 53 12 1711 2229 142149299 142148796 1.610000e-144 523.0
11 TraesCS6B01G201800 chr6D 91.129 372 21 3 3809 4176 142147026 142146663 1.260000e-135 494.0
12 TraesCS6B01G201800 chr6D 86.054 294 37 2 3312 3605 142147432 142147143 3.780000e-81 313.0
13 TraesCS6B01G201800 chr6D 95.652 184 8 0 4848 5031 142146026 142145843 3.810000e-76 296.0
14 TraesCS6B01G201800 chr6D 90.449 178 8 2 4263 4431 142146192 142146015 5.070000e-55 226.0
15 TraesCS6B01G201800 chr6D 89.873 158 16 0 141 298 142151045 142150888 2.380000e-48 204.0
16 TraesCS6B01G201800 chr6D 91.111 135 9 2 10 144 142185561 142185430 4.000000e-41 180.0
17 TraesCS6B01G201800 chr6D 83.019 106 17 1 3684 3788 379159563 379159458 1.490000e-15 95.3
18 TraesCS6B01G201800 chr2B 89.165 443 23 3 4431 4849 596101988 596102429 3.450000e-146 529.0
19 TraesCS6B01G201800 chr2B 94.737 190 10 0 4431 4620 101086099 101085910 3.810000e-76 296.0
20 TraesCS6B01G201800 chr2B 85.317 252 14 1 4621 4849 101085323 101085072 6.510000e-59 239.0
21 TraesCS6B01G201800 chr2B 87.075 147 15 4 4714 4859 101085965 101086108 4.030000e-36 163.0
22 TraesCS6B01G201800 chr2B 86.131 137 16 3 4717 4852 596102119 596101985 1.460000e-30 145.0
23 TraesCS6B01G201800 chr2B 79.882 169 32 1 3430 3598 392894390 392894556 6.840000e-24 122.0
24 TraesCS6B01G201800 chr2B 87.778 90 7 3 3686 3774 747070580 747070666 8.910000e-18 102.0
25 TraesCS6B01G201800 chr2B 100.000 30 0 0 4686 4715 561014478 561014507 7.040000e-04 56.5
26 TraesCS6B01G201800 chr5B 88.117 446 29 2 4429 4851 462259397 462259841 4.500000e-140 508.0
27 TraesCS6B01G201800 chr5B 93.023 129 9 0 4717 4845 652804960 652804832 6.650000e-44 189.0
28 TraesCS6B01G201800 chr7B 86.214 486 36 8 4421 4882 543325416 543324938 9.730000e-137 497.0
29 TraesCS6B01G201800 chr7B 87.528 449 29 4 4431 4853 654868731 654868284 1.260000e-135 494.0
30 TraesCS6B01G201800 chr4B 88.551 428 24 3 4444 4847 621649380 621649806 3.500000e-136 496.0
31 TraesCS6B01G201800 chr4B 87.931 58 7 0 3433 3490 498379992 498380049 9.040000e-08 69.4
32 TraesCS6B01G201800 chr7A 85.202 446 33 8 4431 4852 210815403 210814967 1.290000e-115 427.0
33 TraesCS6B01G201800 chr7A 78.241 432 85 9 4428 4853 722081227 722081655 8.310000e-68 268.0
34 TraesCS6B01G201800 chr3D 79.529 425 81 5 4431 4851 485233644 485234066 1.060000e-76 298.0
35 TraesCS6B01G201800 chr2D 81.065 169 30 1 3430 3598 324218251 324218417 3.160000e-27 134.0
36 TraesCS6B01G201800 chr3B 88.350 103 11 1 3684 3785 729205882 729205984 6.840000e-24 122.0
37 TraesCS6B01G201800 chr3B 86.022 93 10 3 3684 3774 147657032 147657123 4.150000e-16 97.1
38 TraesCS6B01G201800 chr3B 85.393 89 13 0 3684 3772 238314309 238314397 5.370000e-15 93.5
39 TraesCS6B01G201800 chr3B 85.106 94 11 3 3684 3776 672737198 672737289 5.370000e-15 93.5
40 TraesCS6B01G201800 chr3A 86.458 96 12 1 3684 3778 58929336 58929431 2.480000e-18 104.0
41 TraesCS6B01G201800 chr3A 87.097 93 7 3 3684 3772 194479221 194479312 3.210000e-17 100.0
42 TraesCS6B01G201800 chr1B 83.019 106 16 2 3684 3788 61178555 61178659 1.490000e-15 95.3
43 TraesCS6B01G201800 chr2A 86.076 79 11 0 3430 3508 394622277 394622199 8.980000e-13 86.1
44 TraesCS6B01G201800 chr4A 87.931 58 7 0 3433 3490 60022934 60022991 9.040000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G201800 chr6B 245993208 245998240 5032 True 9295.0 9295 100.000000 1 5033 1 chr6B.!!$R2 5032
1 TraesCS6B01G201800 chr6A 187296456 187301341 4885 True 1026.0 3694 92.744600 526 5027 5 chr6A.!!$R1 4501
2 TraesCS6B01G201800 chr6D 142145843 142151045 5202 True 639.0 1827 90.291375 141 5031 8 chr6D.!!$R3 4890
3 TraesCS6B01G201800 chr2B 101085072 101086099 1027 True 267.5 296 90.027000 4431 4849 2 chr2B.!!$R2 418

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
653 657 0.034616 GATTCTAGGCGAGGCAGCAT 59.965 55.0 7.25 2.52 39.27 3.79 F
677 681 0.179240 GTGTGCAGTTTGATCGCGAG 60.179 55.0 16.66 0.00 0.00 5.03 F
873 976 0.659427 CGATGCGATGGTGCTCAAAT 59.341 50.0 0.00 0.00 35.36 2.32 F
1626 1966 0.809241 CCTCGCCTCACTGAGCATTC 60.809 60.0 0.00 0.00 0.00 2.67 F
3364 4126 0.178961 AGGTCCTCCAAACTTTGCCC 60.179 55.0 0.00 0.00 35.89 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1611 1951 1.022735 CATGGAATGCTCAGTGAGGC 58.977 55.000 21.54 13.79 37.62 4.70 R
2134 2486 1.382522 CCAGCATCACGCAGGTTAAT 58.617 50.000 0.00 0.00 46.13 1.40 R
2789 3285 1.213926 GGAGCCTGGAAATCAGTCCAT 59.786 52.381 0.00 0.00 46.66 3.41 R
3477 4239 0.318699 GTGAAACAGGGAAAAGCGGC 60.319 55.000 0.00 0.00 36.32 6.53 R
4850 7311 0.108662 TAGCTGTCATGCACGAGTGG 60.109 55.000 0.00 0.00 34.99 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.753294 GTCTCCTTGACTTCCAACAGA 57.247 47.619 0.00 0.00 42.21 3.41
28 29 3.658709 GTCTCCTTGACTTCCAACAGAG 58.341 50.000 0.00 0.00 42.21 3.35
29 30 2.037772 TCTCCTTGACTTCCAACAGAGC 59.962 50.000 0.00 0.00 33.35 4.09
30 31 2.038295 CTCCTTGACTTCCAACAGAGCT 59.962 50.000 0.00 0.00 0.00 4.09
31 32 2.439507 TCCTTGACTTCCAACAGAGCTT 59.560 45.455 0.00 0.00 0.00 3.74
32 33 3.117888 TCCTTGACTTCCAACAGAGCTTT 60.118 43.478 0.00 0.00 0.00 3.51
33 34 3.251972 CCTTGACTTCCAACAGAGCTTTC 59.748 47.826 0.00 0.00 0.00 2.62
34 35 3.845781 TGACTTCCAACAGAGCTTTCT 57.154 42.857 0.00 0.00 0.00 2.52
35 36 4.955811 TGACTTCCAACAGAGCTTTCTA 57.044 40.909 0.00 0.00 0.00 2.10
36 37 4.887748 TGACTTCCAACAGAGCTTTCTAG 58.112 43.478 0.00 0.00 0.00 2.43
37 38 4.588951 TGACTTCCAACAGAGCTTTCTAGA 59.411 41.667 0.00 0.00 0.00 2.43
38 39 4.888917 ACTTCCAACAGAGCTTTCTAGAC 58.111 43.478 0.00 0.00 0.00 2.59
39 40 4.345257 ACTTCCAACAGAGCTTTCTAGACA 59.655 41.667 0.00 0.00 0.00 3.41
40 41 4.527509 TCCAACAGAGCTTTCTAGACAG 57.472 45.455 1.26 1.26 0.00 3.51
41 42 3.259374 TCCAACAGAGCTTTCTAGACAGG 59.741 47.826 7.98 0.00 0.00 4.00
42 43 3.594134 CAACAGAGCTTTCTAGACAGGG 58.406 50.000 7.98 0.00 0.00 4.45
43 44 2.183679 ACAGAGCTTTCTAGACAGGGG 58.816 52.381 7.98 0.00 0.00 4.79
44 45 2.225394 ACAGAGCTTTCTAGACAGGGGA 60.225 50.000 7.98 0.00 0.00 4.81
45 46 2.834549 CAGAGCTTTCTAGACAGGGGAA 59.165 50.000 7.98 0.00 0.00 3.97
46 47 3.454082 CAGAGCTTTCTAGACAGGGGAAT 59.546 47.826 7.98 0.00 0.00 3.01
47 48 3.709141 AGAGCTTTCTAGACAGGGGAATC 59.291 47.826 7.98 0.00 0.00 2.52
48 49 3.452627 GAGCTTTCTAGACAGGGGAATCA 59.547 47.826 7.98 0.00 0.00 2.57
49 50 4.043596 AGCTTTCTAGACAGGGGAATCAT 58.956 43.478 7.98 0.00 0.00 2.45
50 51 4.476479 AGCTTTCTAGACAGGGGAATCATT 59.524 41.667 7.98 0.00 0.00 2.57
51 52 4.578105 GCTTTCTAGACAGGGGAATCATTG 59.422 45.833 7.98 0.00 0.00 2.82
52 53 5.630069 GCTTTCTAGACAGGGGAATCATTGA 60.630 44.000 7.98 0.00 0.00 2.57
53 54 6.387192 TTTCTAGACAGGGGAATCATTGAA 57.613 37.500 0.00 0.00 0.00 2.69
54 55 6.581388 TTCTAGACAGGGGAATCATTGAAT 57.419 37.500 0.00 0.00 0.00 2.57
55 56 6.581388 TCTAGACAGGGGAATCATTGAATT 57.419 37.500 0.00 0.00 0.00 2.17
56 57 6.973642 TCTAGACAGGGGAATCATTGAATTT 58.026 36.000 0.00 0.00 0.00 1.82
57 58 7.056635 TCTAGACAGGGGAATCATTGAATTTC 58.943 38.462 0.00 0.00 0.00 2.17
58 59 5.835582 AGACAGGGGAATCATTGAATTTCT 58.164 37.500 0.00 0.00 0.00 2.52
59 60 5.890419 AGACAGGGGAATCATTGAATTTCTC 59.110 40.000 0.00 0.00 0.00 2.87
60 61 5.835582 ACAGGGGAATCATTGAATTTCTCT 58.164 37.500 0.00 0.00 0.00 3.10
61 62 6.259123 ACAGGGGAATCATTGAATTTCTCTT 58.741 36.000 0.00 0.00 0.00 2.85
62 63 6.727697 ACAGGGGAATCATTGAATTTCTCTTT 59.272 34.615 0.00 0.00 0.00 2.52
63 64 7.236225 ACAGGGGAATCATTGAATTTCTCTTTT 59.764 33.333 0.00 0.00 0.00 2.27
64 65 8.752187 CAGGGGAATCATTGAATTTCTCTTTTA 58.248 33.333 0.00 0.00 0.00 1.52
65 66 8.753133 AGGGGAATCATTGAATTTCTCTTTTAC 58.247 33.333 0.00 0.00 0.00 2.01
66 67 8.531146 GGGGAATCATTGAATTTCTCTTTTACA 58.469 33.333 0.00 0.00 0.00 2.41
67 68 9.358872 GGGAATCATTGAATTTCTCTTTTACAC 57.641 33.333 0.00 0.00 0.00 2.90
68 69 9.912634 GGAATCATTGAATTTCTCTTTTACACA 57.087 29.630 0.00 0.00 0.00 3.72
71 72 8.746922 TCATTGAATTTCTCTTTTACACATGC 57.253 30.769 0.00 0.00 0.00 4.06
72 73 7.538334 TCATTGAATTTCTCTTTTACACATGCG 59.462 33.333 0.00 0.00 0.00 4.73
73 74 6.552859 TGAATTTCTCTTTTACACATGCGA 57.447 33.333 0.00 0.00 0.00 5.10
74 75 7.144722 TGAATTTCTCTTTTACACATGCGAT 57.855 32.000 0.00 0.00 0.00 4.58
75 76 8.262715 TGAATTTCTCTTTTACACATGCGATA 57.737 30.769 0.00 0.00 0.00 2.92
76 77 8.390354 TGAATTTCTCTTTTACACATGCGATAG 58.610 33.333 0.00 0.00 0.00 2.08
77 78 8.492673 AATTTCTCTTTTACACATGCGATAGA 57.507 30.769 0.00 0.00 39.76 1.98
78 79 7.525688 TTTCTCTTTTACACATGCGATAGAG 57.474 36.000 0.00 0.00 39.76 2.43
79 80 5.043903 TCTCTTTTACACATGCGATAGAGC 58.956 41.667 0.00 0.00 39.76 4.09
104 105 2.128771 TTTCCAGATACTTGGCTGCC 57.871 50.000 12.87 12.87 38.16 4.85
105 106 0.991146 TTCCAGATACTTGGCTGCCA 59.009 50.000 19.30 19.30 38.16 4.92
106 107 0.543277 TCCAGATACTTGGCTGCCAG 59.457 55.000 22.17 17.45 38.16 4.85
107 108 1.099879 CCAGATACTTGGCTGCCAGC 61.100 60.000 22.17 8.55 41.46 4.85
108 109 0.107312 CAGATACTTGGCTGCCAGCT 60.107 55.000 22.17 12.97 41.99 4.24
109 110 1.139654 CAGATACTTGGCTGCCAGCTA 59.860 52.381 22.17 14.73 41.99 3.32
110 111 1.839994 AGATACTTGGCTGCCAGCTAA 59.160 47.619 22.17 16.22 41.99 3.09
111 112 1.943340 GATACTTGGCTGCCAGCTAAC 59.057 52.381 22.17 9.86 41.99 2.34
112 113 0.984230 TACTTGGCTGCCAGCTAACT 59.016 50.000 22.17 8.34 41.99 2.24
113 114 0.111253 ACTTGGCTGCCAGCTAACTT 59.889 50.000 22.17 1.39 41.99 2.66
114 115 1.351017 ACTTGGCTGCCAGCTAACTTA 59.649 47.619 22.17 3.19 41.99 2.24
115 116 1.740025 CTTGGCTGCCAGCTAACTTAC 59.260 52.381 22.17 0.00 41.99 2.34
116 117 0.690192 TGGCTGCCAGCTAACTTACA 59.310 50.000 19.30 0.64 41.99 2.41
117 118 1.073125 TGGCTGCCAGCTAACTTACAA 59.927 47.619 19.30 0.00 41.99 2.41
118 119 1.468914 GGCTGCCAGCTAACTTACAAC 59.531 52.381 17.55 0.00 41.99 3.32
119 120 2.151202 GCTGCCAGCTAACTTACAACA 58.849 47.619 10.04 0.00 38.45 3.33
120 121 2.552315 GCTGCCAGCTAACTTACAACAA 59.448 45.455 10.04 0.00 38.45 2.83
121 122 3.191371 GCTGCCAGCTAACTTACAACAAT 59.809 43.478 10.04 0.00 38.45 2.71
122 123 4.321230 GCTGCCAGCTAACTTACAACAATT 60.321 41.667 10.04 0.00 38.45 2.32
123 124 5.772521 CTGCCAGCTAACTTACAACAATTT 58.227 37.500 0.00 0.00 0.00 1.82
124 125 5.527951 TGCCAGCTAACTTACAACAATTTG 58.472 37.500 0.00 0.00 38.83 2.32
125 126 4.385748 GCCAGCTAACTTACAACAATTTGC 59.614 41.667 0.00 0.00 36.00 3.68
126 127 5.772521 CCAGCTAACTTACAACAATTTGCT 58.227 37.500 0.00 0.00 36.00 3.91
127 128 6.569610 GCCAGCTAACTTACAACAATTTGCTA 60.570 38.462 0.00 0.00 36.00 3.49
128 129 7.538575 CCAGCTAACTTACAACAATTTGCTAT 58.461 34.615 0.00 0.00 36.00 2.97
129 130 7.485913 CCAGCTAACTTACAACAATTTGCTATG 59.514 37.037 0.00 0.00 36.00 2.23
130 131 8.023128 CAGCTAACTTACAACAATTTGCTATGT 58.977 33.333 0.00 2.74 36.00 2.29
131 132 8.576442 AGCTAACTTACAACAATTTGCTATGTT 58.424 29.630 7.95 6.94 40.24 2.71
132 133 8.850452 GCTAACTTACAACAATTTGCTATGTTC 58.150 33.333 7.95 0.00 37.66 3.18
133 134 9.891828 CTAACTTACAACAATTTGCTATGTTCA 57.108 29.630 7.95 0.00 37.66 3.18
134 135 8.574196 AACTTACAACAATTTGCTATGTTCAC 57.426 30.769 7.95 0.00 37.66 3.18
135 136 7.940850 ACTTACAACAATTTGCTATGTTCACT 58.059 30.769 7.95 0.00 37.66 3.41
136 137 7.862372 ACTTACAACAATTTGCTATGTTCACTG 59.138 33.333 7.95 0.00 37.66 3.66
137 138 5.531634 ACAACAATTTGCTATGTTCACTGG 58.468 37.500 0.00 0.00 37.66 4.00
138 139 5.301551 ACAACAATTTGCTATGTTCACTGGA 59.698 36.000 0.00 0.00 37.66 3.86
139 140 6.183360 ACAACAATTTGCTATGTTCACTGGAA 60.183 34.615 0.00 0.00 37.66 3.53
144 145 4.846779 TGCTATGTTCACTGGAAAAACC 57.153 40.909 0.00 0.00 34.13 3.27
153 154 2.433970 CACTGGAAAAACCCATGGTGTT 59.566 45.455 11.73 11.61 34.05 3.32
163 164 2.093764 ACCCATGGTGTTGTTTGTTGTG 60.094 45.455 11.73 0.00 32.98 3.33
171 172 4.917415 GGTGTTGTTTGTTGTGAGATATGC 59.083 41.667 0.00 0.00 0.00 3.14
173 174 6.208644 GTGTTGTTTGTTGTGAGATATGCTT 58.791 36.000 0.00 0.00 0.00 3.91
180 181 5.324409 TGTTGTGAGATATGCTTCCCTTTT 58.676 37.500 0.00 0.00 0.00 2.27
182 183 5.178096 TGTGAGATATGCTTCCCTTTTGA 57.822 39.130 0.00 0.00 0.00 2.69
206 207 8.046708 TGATAAAGGTGAGTATTGTGCTTATGT 58.953 33.333 0.00 0.00 0.00 2.29
254 255 6.985188 AAACTTCTATGCGAATCTTGCTTA 57.015 33.333 0.00 0.00 0.00 3.09
255 256 6.595772 AACTTCTATGCGAATCTTGCTTAG 57.404 37.500 0.00 2.51 39.89 2.18
269 270 8.644374 AATCTTGCTTAGTATTTTGGTAACCA 57.356 30.769 0.00 0.00 0.00 3.67
286 287 1.996292 CCACAGAGGTATGTCACACG 58.004 55.000 0.00 0.00 0.00 4.49
287 288 1.350193 CACAGAGGTATGTCACACGC 58.650 55.000 0.00 0.00 0.00 5.34
288 289 0.966179 ACAGAGGTATGTCACACGCA 59.034 50.000 0.00 0.00 0.00 5.24
289 290 1.336887 ACAGAGGTATGTCACACGCAC 60.337 52.381 0.00 0.00 0.00 5.34
290 291 0.109272 AGAGGTATGTCACACGCACG 60.109 55.000 0.00 0.00 0.00 5.34
291 292 1.683790 GAGGTATGTCACACGCACGC 61.684 60.000 0.00 0.00 0.00 5.34
292 293 2.024868 GGTATGTCACACGCACGCA 61.025 57.895 0.00 0.00 0.00 5.24
293 294 1.358725 GGTATGTCACACGCACGCAT 61.359 55.000 0.00 0.00 0.00 4.73
294 295 1.273688 GTATGTCACACGCACGCATA 58.726 50.000 0.00 0.00 0.00 3.14
295 296 1.006391 GTATGTCACACGCACGCATAC 60.006 52.381 0.00 0.00 36.37 2.39
296 297 0.669012 ATGTCACACGCACGCATACA 60.669 50.000 0.00 0.00 0.00 2.29
297 298 1.129809 GTCACACGCACGCATACAC 59.870 57.895 0.00 0.00 0.00 2.90
298 299 2.093799 CACACGCACGCATACACG 59.906 61.111 0.00 0.00 39.50 4.49
299 300 3.773630 ACACGCACGCATACACGC 61.774 61.111 0.00 0.00 36.19 5.34
300 301 3.772560 CACGCACGCATACACGCA 61.773 61.111 0.00 0.00 36.19 5.24
301 302 3.773630 ACGCACGCATACACGCAC 61.774 61.111 0.00 0.00 36.19 5.34
302 303 4.826605 CGCACGCATACACGCACG 62.827 66.667 0.00 0.00 36.19 5.34
304 305 3.772560 CACGCATACACGCACGCA 61.773 61.111 0.00 0.00 36.19 5.24
305 306 3.773630 ACGCATACACGCACGCAC 61.774 61.111 0.00 0.00 36.19 5.34
306 307 3.772560 CGCATACACGCACGCACA 61.773 61.111 0.00 0.00 0.00 4.57
307 308 2.202171 GCATACACGCACGCACAC 60.202 61.111 0.00 0.00 0.00 3.82
309 310 3.773630 ATACACGCACGCACACGC 61.774 61.111 0.00 0.00 45.53 5.34
334 335 2.170738 GTGCACACACACACACACT 58.829 52.632 13.17 0.00 46.61 3.55
340 341 2.487762 CACACACACACACACTCCTTTT 59.512 45.455 0.00 0.00 0.00 2.27
343 344 2.747446 ACACACACACACTCCTTTTGAC 59.253 45.455 0.00 0.00 0.00 3.18
345 346 2.276201 CACACACACTCCTTTTGACGA 58.724 47.619 0.00 0.00 0.00 4.20
348 349 3.945285 ACACACACTCCTTTTGACGATTT 59.055 39.130 0.00 0.00 0.00 2.17
349 350 5.007234 CACACACACTCCTTTTGACGATTTA 59.993 40.000 0.00 0.00 0.00 1.40
374 375 7.817418 TCTTTTTATAAATAGGGCGATTGCT 57.183 32.000 13.59 0.00 42.25 3.91
375 376 7.871853 TCTTTTTATAAATAGGGCGATTGCTC 58.128 34.615 13.59 0.00 44.16 4.26
408 409 1.497286 AGGCCCTTACAAGGTTCAACA 59.503 47.619 0.00 0.00 44.98 3.33
433 437 6.844696 AAAAATGTATATCGAGACATGCGT 57.155 33.333 10.21 0.00 37.57 5.24
434 438 6.844696 AAAATGTATATCGAGACATGCGTT 57.155 33.333 10.21 3.55 37.57 4.84
460 464 4.435651 GCAACGTGCAATAGTAGAGGTTTC 60.436 45.833 0.00 0.00 44.26 2.78
504 508 0.435008 CAAGCGACGTAACACTGAGC 59.565 55.000 0.00 0.00 0.00 4.26
534 538 7.171630 ACAAGAGAAGGATAAGATAACACGT 57.828 36.000 0.00 0.00 0.00 4.49
538 542 7.808672 AGAGAAGGATAAGATAACACGTATCG 58.191 38.462 0.00 0.00 43.12 2.92
539 543 7.660617 AGAGAAGGATAAGATAACACGTATCGA 59.339 37.037 0.00 0.00 43.12 3.59
570 574 3.503827 AGCTCGTGATGATTTGACGTA 57.496 42.857 0.00 0.00 34.69 3.57
649 653 0.179111 CAACGATTCTAGGCGAGGCA 60.179 55.000 7.40 0.00 0.00 4.75
653 657 0.034616 GATTCTAGGCGAGGCAGCAT 59.965 55.000 7.25 2.52 39.27 3.79
677 681 0.179240 GTGTGCAGTTTGATCGCGAG 60.179 55.000 16.66 0.00 0.00 5.03
678 682 1.291184 TGTGCAGTTTGATCGCGAGG 61.291 55.000 16.66 0.00 0.00 4.63
860 963 6.410914 GGTTAGAATTTGTTATGTTCGATGCG 59.589 38.462 0.00 0.00 0.00 4.73
873 976 0.659427 CGATGCGATGGTGCTCAAAT 59.341 50.000 0.00 0.00 35.36 2.32
1611 1951 5.011090 TGGATCTTGTTGATAGAACCTCG 57.989 43.478 0.00 0.00 36.03 4.63
1626 1966 0.809241 CCTCGCCTCACTGAGCATTC 60.809 60.000 0.00 0.00 0.00 2.67
1632 1972 1.022735 CTCACTGAGCATTCCATGGC 58.977 55.000 6.96 0.00 0.00 4.40
1682 2028 2.880890 AGTTGAGAGGATTGTGTGTTGC 59.119 45.455 0.00 0.00 0.00 4.17
1686 2032 3.141398 GAGAGGATTGTGTGTTGCTGAA 58.859 45.455 0.00 0.00 0.00 3.02
1821 2168 6.000840 TGTTTTGCTGTGATAGTTGATGGTA 58.999 36.000 0.00 0.00 0.00 3.25
2037 2388 3.966665 TGCCATTTCTTCCAACTTTCCTT 59.033 39.130 0.00 0.00 0.00 3.36
2082 2434 2.101415 TGTGATCCTGATACCTGAAGCG 59.899 50.000 0.00 0.00 0.00 4.68
2134 2486 7.154656 CAGCTGTATGTGTTATATTAGGCTGA 58.845 38.462 5.25 0.00 42.99 4.26
2175 2528 6.242396 TGGTAGCTTTGAATTAGGCTGTTTA 58.758 36.000 0.00 0.00 36.40 2.01
2176 2529 6.889722 TGGTAGCTTTGAATTAGGCTGTTTAT 59.110 34.615 0.00 0.00 36.40 1.40
2177 2530 7.396055 TGGTAGCTTTGAATTAGGCTGTTTATT 59.604 33.333 0.00 0.00 36.40 1.40
2263 2714 7.609146 CCATGTACCATGACTGAAGCATATATT 59.391 37.037 5.80 0.00 0.00 1.28
2539 2990 2.919228 AGACTTCGGAAAACAGCAAGT 58.081 42.857 0.00 0.00 0.00 3.16
2624 3103 1.056700 ACCTTCTCCACTGCCTGTGT 61.057 55.000 0.91 0.00 44.81 3.72
2707 3186 8.367156 ACACATTTAAATGGTAGTGCAAAGATT 58.633 29.630 27.43 3.28 40.70 2.40
2873 3369 3.205056 TGCTCAATATTCTTGGGATGGGT 59.795 43.478 0.00 0.00 0.00 4.51
2874 3370 4.218312 GCTCAATATTCTTGGGATGGGTT 58.782 43.478 0.00 0.00 0.00 4.11
3204 3825 3.837355 AGCCAATGGATAGGGTCATTTC 58.163 45.455 2.05 0.00 31.95 2.17
3226 3847 4.402793 TCTCTAGGACCAAATCTGTACTGC 59.597 45.833 0.00 0.00 0.00 4.40
3238 3859 3.441101 TCTGTACTGCAATAGTCCTGGT 58.559 45.455 0.00 0.00 40.89 4.00
3239 3860 3.838317 TCTGTACTGCAATAGTCCTGGTT 59.162 43.478 0.00 0.00 40.89 3.67
3247 4009 3.821033 GCAATAGTCCTGGTTTGTCTGTT 59.179 43.478 0.00 0.00 0.00 3.16
3291 4053 9.262358 GTTATATTGTAAAGAAGGTGCTCTAGG 57.738 37.037 0.00 0.00 0.00 3.02
3292 4054 7.676683 ATATTGTAAAGAAGGTGCTCTAGGA 57.323 36.000 0.00 0.00 0.00 2.94
3293 4055 4.803098 TGTAAAGAAGGTGCTCTAGGAC 57.197 45.455 0.00 0.00 35.50 3.85
3294 4056 4.417437 TGTAAAGAAGGTGCTCTAGGACT 58.583 43.478 1.54 0.00 36.56 3.85
3295 4057 5.577100 TGTAAAGAAGGTGCTCTAGGACTA 58.423 41.667 1.54 0.00 36.56 2.59
3296 4058 6.014647 TGTAAAGAAGGTGCTCTAGGACTAA 58.985 40.000 1.54 0.00 36.56 2.24
3297 4059 5.408880 AAAGAAGGTGCTCTAGGACTAAC 57.591 43.478 1.54 0.00 36.56 2.34
3298 4060 4.048970 AGAAGGTGCTCTAGGACTAACA 57.951 45.455 1.54 0.00 36.56 2.41
3299 4061 4.615513 AGAAGGTGCTCTAGGACTAACAT 58.384 43.478 1.54 0.00 36.56 2.71
3300 4062 4.647399 AGAAGGTGCTCTAGGACTAACATC 59.353 45.833 1.54 0.00 36.56 3.06
3301 4063 3.982516 AGGTGCTCTAGGACTAACATCA 58.017 45.455 1.54 0.00 36.56 3.07
3302 4064 4.353777 AGGTGCTCTAGGACTAACATCAA 58.646 43.478 1.54 0.00 36.56 2.57
3303 4065 4.777896 AGGTGCTCTAGGACTAACATCAAA 59.222 41.667 1.54 0.00 36.56 2.69
3304 4066 5.248477 AGGTGCTCTAGGACTAACATCAAAA 59.752 40.000 1.54 0.00 36.56 2.44
3305 4067 5.582665 GGTGCTCTAGGACTAACATCAAAAG 59.417 44.000 1.54 0.00 36.56 2.27
3306 4068 6.398918 GTGCTCTAGGACTAACATCAAAAGA 58.601 40.000 0.00 0.00 33.32 2.52
3307 4069 6.874134 GTGCTCTAGGACTAACATCAAAAGAA 59.126 38.462 0.00 0.00 33.32 2.52
3308 4070 7.550906 GTGCTCTAGGACTAACATCAAAAGAAT 59.449 37.037 0.00 0.00 33.32 2.40
3309 4071 8.103305 TGCTCTAGGACTAACATCAAAAGAATT 58.897 33.333 0.00 0.00 0.00 2.17
3310 4072 8.608317 GCTCTAGGACTAACATCAAAAGAATTC 58.392 37.037 0.00 0.00 0.00 2.17
3347 4109 6.017605 GCACAATCTGAATACATACCTTCAGG 60.018 42.308 11.22 0.00 45.41 3.86
3364 4126 0.178961 AGGTCCTCCAAACTTTGCCC 60.179 55.000 0.00 0.00 35.89 5.36
3373 4135 3.637229 TCCAAACTTTGCCCGTAAAATCA 59.363 39.130 0.00 0.00 0.00 2.57
3384 4146 6.487960 TGCCCGTAAAATCATGTAAATAACG 58.512 36.000 0.00 0.00 0.00 3.18
3401 4163 9.698617 GTAAATAACGAATACAGTGAACATTCC 57.301 33.333 0.00 0.00 0.00 3.01
3405 4167 5.100259 ACGAATACAGTGAACATTCCGTAG 58.900 41.667 0.00 0.00 0.00 3.51
3407 4169 4.737855 ATACAGTGAACATTCCGTAGCT 57.262 40.909 0.00 0.00 0.00 3.32
3422 4184 4.222145 TCCGTAGCTAGTTTTGTGGATTCT 59.778 41.667 0.00 0.00 0.00 2.40
3457 4219 0.611618 TTGGCATTGCGGTGGATTCT 60.612 50.000 1.91 0.00 0.00 2.40
3463 4225 3.548818 GCATTGCGGTGGATTCTCATAAC 60.549 47.826 0.00 0.00 0.00 1.89
3467 4229 1.488812 CGGTGGATTCTCATAACCCCA 59.511 52.381 0.00 0.00 0.00 4.96
3477 4239 1.568597 TCATAACCCCATTCACCCCAG 59.431 52.381 0.00 0.00 0.00 4.45
3480 4242 4.820744 CCCCATTCACCCCAGCCG 62.821 72.222 0.00 0.00 0.00 5.52
3494 4256 0.039165 CAGCCGCTTTTCCCTGTTTC 60.039 55.000 0.00 0.00 0.00 2.78
3496 4258 0.318699 GCCGCTTTTCCCTGTTTCAC 60.319 55.000 0.00 0.00 0.00 3.18
3508 4270 4.157656 TCCCTGTTTCACTGTTTGTTTGAG 59.842 41.667 0.00 0.00 0.00 3.02
3511 4273 3.256879 TGTTTCACTGTTTGTTTGAGCCA 59.743 39.130 0.00 0.00 0.00 4.75
3515 4277 1.134946 ACTGTTTGTTTGAGCCACTGC 59.865 47.619 0.00 0.00 37.95 4.40
3567 4329 9.507280 CCACAACAGATTATAAAATAAGCACAG 57.493 33.333 0.00 0.00 0.00 3.66
3571 4333 9.988350 AACAGATTATAAAATAAGCACAGAACG 57.012 29.630 0.00 0.00 0.00 3.95
3594 4356 1.336755 ACAGTTCATCAACCGCAAACC 59.663 47.619 0.00 0.00 32.22 3.27
3598 4360 0.250124 TCATCAACCGCAAACCGAGT 60.250 50.000 0.00 0.00 40.02 4.18
3605 4367 0.794473 CCGCAAACCGAGTCTTAACC 59.206 55.000 0.00 0.00 40.02 2.85
3607 4369 1.193874 CGCAAACCGAGTCTTAACCAC 59.806 52.381 0.00 0.00 40.02 4.16
3613 4386 2.374170 ACCGAGTCTTAACCACCCAATT 59.626 45.455 0.00 0.00 0.00 2.32
3677 4453 3.439932 CGAGTTCGTTTCACATTCCTG 57.560 47.619 0.00 0.00 34.11 3.86
3689 4465 3.932710 TCACATTCCTGATTGCGAAGTAC 59.067 43.478 0.00 0.00 0.00 2.73
3690 4466 3.935203 CACATTCCTGATTGCGAAGTACT 59.065 43.478 0.00 0.00 0.00 2.73
3691 4467 4.033358 CACATTCCTGATTGCGAAGTACTC 59.967 45.833 0.00 0.00 0.00 2.59
3692 4468 2.961526 TCCTGATTGCGAAGTACTCC 57.038 50.000 0.00 0.00 0.00 3.85
3693 4469 1.480954 TCCTGATTGCGAAGTACTCCC 59.519 52.381 0.00 0.00 0.00 4.30
3694 4470 1.482593 CCTGATTGCGAAGTACTCCCT 59.517 52.381 0.00 0.00 0.00 4.20
3695 4471 2.482142 CCTGATTGCGAAGTACTCCCTC 60.482 54.545 0.00 0.00 0.00 4.30
3696 4472 1.480954 TGATTGCGAAGTACTCCCTCC 59.519 52.381 0.00 0.00 0.00 4.30
3697 4473 0.460311 ATTGCGAAGTACTCCCTCCG 59.540 55.000 0.00 0.00 0.00 4.63
3698 4474 0.896940 TTGCGAAGTACTCCCTCCGT 60.897 55.000 0.00 0.00 0.00 4.69
3699 4475 1.310933 TGCGAAGTACTCCCTCCGTC 61.311 60.000 0.00 0.00 0.00 4.79
3700 4476 2.002509 GCGAAGTACTCCCTCCGTCC 62.003 65.000 0.00 0.00 0.00 4.79
3701 4477 1.382692 CGAAGTACTCCCTCCGTCCC 61.383 65.000 0.00 0.00 0.00 4.46
3702 4478 0.324091 GAAGTACTCCCTCCGTCCCA 60.324 60.000 0.00 0.00 0.00 4.37
3703 4479 0.338814 AAGTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
3706 4482 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
3707 4483 3.400322 AGTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
3708 4484 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3710 4486 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3711 4487 5.600749 ACTCCCTCCGTCCCATAATATAAT 58.399 41.667 0.00 0.00 0.00 1.28
3712 4488 6.748969 ACTCCCTCCGTCCCATAATATAATA 58.251 40.000 0.00 0.00 0.00 0.98
3713 4489 7.194050 ACTCCCTCCGTCCCATAATATAATAA 58.806 38.462 0.00 0.00 0.00 1.40
3714 4490 7.125356 ACTCCCTCCGTCCCATAATATAATAAC 59.875 40.741 0.00 0.00 0.00 1.89
3715 4491 6.097270 TCCCTCCGTCCCATAATATAATAACG 59.903 42.308 0.00 0.00 0.00 3.18
3716 4492 5.751990 CCTCCGTCCCATAATATAATAACGC 59.248 44.000 0.00 0.00 0.00 4.84
3717 4493 6.406624 CCTCCGTCCCATAATATAATAACGCT 60.407 42.308 0.00 0.00 0.00 5.07
3718 4494 6.938507 TCCGTCCCATAATATAATAACGCTT 58.061 36.000 0.00 0.00 0.00 4.68
3719 4495 7.388437 TCCGTCCCATAATATAATAACGCTTT 58.612 34.615 0.00 0.00 0.00 3.51
3720 4496 7.879160 TCCGTCCCATAATATAATAACGCTTTT 59.121 33.333 0.00 0.00 0.00 2.27
3721 4497 8.173130 CCGTCCCATAATATAATAACGCTTTTC 58.827 37.037 0.00 0.00 0.00 2.29
3722 4498 8.714179 CGTCCCATAATATAATAACGCTTTTCA 58.286 33.333 0.00 0.00 0.00 2.69
3745 4521 8.825667 TCAAGCTTTGTTAGTTTGAAAAACTT 57.174 26.923 10.40 0.00 46.83 2.66
3746 4522 9.267084 TCAAGCTTTGTTAGTTTGAAAAACTTT 57.733 25.926 10.40 0.00 46.83 2.66
3747 4523 9.528847 CAAGCTTTGTTAGTTTGAAAAACTTTC 57.471 29.630 10.40 5.66 45.02 2.62
3748 4524 9.489084 AAGCTTTGTTAGTTTGAAAAACTTTCT 57.511 25.926 10.40 0.00 0.00 2.52
3749 4525 9.489084 AGCTTTGTTAGTTTGAAAAACTTTCTT 57.511 25.926 10.40 0.00 0.00 2.52
3766 4542 9.853177 AAACTTTCTTATATTATGGGACTGAGG 57.147 33.333 0.00 0.00 0.00 3.86
3767 4543 7.978925 ACTTTCTTATATTATGGGACTGAGGG 58.021 38.462 0.00 0.00 0.00 4.30
3768 4544 7.794683 ACTTTCTTATATTATGGGACTGAGGGA 59.205 37.037 0.00 0.00 0.00 4.20
3769 4545 7.798710 TTCTTATATTATGGGACTGAGGGAG 57.201 40.000 0.00 0.00 0.00 4.30
3770 4546 6.875469 TCTTATATTATGGGACTGAGGGAGT 58.125 40.000 0.00 0.00 37.76 3.85
3771 4547 8.008104 TCTTATATTATGGGACTGAGGGAGTA 57.992 38.462 0.00 0.00 33.83 2.59
3772 4548 7.894364 TCTTATATTATGGGACTGAGGGAGTAC 59.106 40.741 0.00 0.00 33.83 2.73
3773 4549 4.561254 ATTATGGGACTGAGGGAGTACT 57.439 45.455 0.00 0.00 35.54 2.73
3774 4550 5.681494 ATTATGGGACTGAGGGAGTACTA 57.319 43.478 0.00 0.00 35.54 1.82
3775 4551 5.476950 TTATGGGACTGAGGGAGTACTAA 57.523 43.478 0.00 0.00 35.54 2.24
3776 4552 3.383698 TGGGACTGAGGGAGTACTAAG 57.616 52.381 0.00 0.00 35.54 2.18
3777 4553 2.924302 TGGGACTGAGGGAGTACTAAGA 59.076 50.000 0.00 0.00 35.54 2.10
3778 4554 3.335786 TGGGACTGAGGGAGTACTAAGAA 59.664 47.826 0.00 0.00 35.54 2.52
3779 4555 4.202749 TGGGACTGAGGGAGTACTAAGAAA 60.203 45.833 0.00 0.00 35.54 2.52
3780 4556 4.160065 GGGACTGAGGGAGTACTAAGAAAC 59.840 50.000 0.00 0.00 35.54 2.78
3781 4557 5.018149 GGACTGAGGGAGTACTAAGAAACT 58.982 45.833 0.00 0.00 33.83 2.66
3782 4558 6.186234 GGACTGAGGGAGTACTAAGAAACTA 58.814 44.000 0.00 0.00 33.83 2.24
3783 4559 6.834969 GGACTGAGGGAGTACTAAGAAACTAT 59.165 42.308 0.00 0.00 33.83 2.12
3784 4560 7.997803 GGACTGAGGGAGTACTAAGAAACTATA 59.002 40.741 0.00 0.00 33.83 1.31
3785 4561 9.406113 GACTGAGGGAGTACTAAGAAACTATAA 57.594 37.037 0.00 0.00 33.83 0.98
3786 4562 9.765295 ACTGAGGGAGTACTAAGAAACTATAAA 57.235 33.333 0.00 0.00 30.86 1.40
3788 4564 8.975295 TGAGGGAGTACTAAGAAACTATAAACC 58.025 37.037 0.00 0.00 0.00 3.27
3789 4565 8.005192 AGGGAGTACTAAGAAACTATAAACCG 57.995 38.462 0.00 0.00 0.00 4.44
3790 4566 7.069208 AGGGAGTACTAAGAAACTATAAACCGG 59.931 40.741 0.00 0.00 0.00 5.28
3791 4567 7.068716 GGGAGTACTAAGAAACTATAAACCGGA 59.931 40.741 9.46 0.00 0.00 5.14
3792 4568 8.470002 GGAGTACTAAGAAACTATAAACCGGAA 58.530 37.037 9.46 0.00 0.00 4.30
3793 4569 9.513727 GAGTACTAAGAAACTATAAACCGGAAG 57.486 37.037 9.46 0.00 0.00 3.46
3794 4570 9.247861 AGTACTAAGAAACTATAAACCGGAAGA 57.752 33.333 9.46 0.00 0.00 2.87
3795 4571 9.513727 GTACTAAGAAACTATAAACCGGAAGAG 57.486 37.037 9.46 1.99 0.00 2.85
3796 4572 7.554211 ACTAAGAAACTATAAACCGGAAGAGG 58.446 38.462 9.46 0.00 37.30 3.69
3798 4574 7.486407 AAGAAACTATAAACCGGAAGAGGTA 57.514 36.000 9.46 0.00 45.21 3.08
3799 4575 7.110043 AGAAACTATAAACCGGAAGAGGTAG 57.890 40.000 9.46 5.18 45.21 3.18
3800 4576 6.666980 AGAAACTATAAACCGGAAGAGGTAGT 59.333 38.462 9.46 5.84 45.21 2.73
3801 4577 5.848833 ACTATAAACCGGAAGAGGTAGTG 57.151 43.478 9.46 0.00 45.21 2.74
3804 4580 2.019807 AACCGGAAGAGGTAGTGGAA 57.980 50.000 9.46 0.00 45.21 3.53
3857 4633 9.133627 GAAGTTTAATTTCTTGAAGGCTTCATC 57.866 33.333 28.98 15.24 39.84 2.92
3865 4641 3.049708 TGAAGGCTTCATCACTCACAG 57.950 47.619 25.38 0.00 34.08 3.66
3869 4645 1.338484 GGCTTCATCACTCACAGCTCA 60.338 52.381 0.00 0.00 0.00 4.26
3880 4660 3.181477 ACTCACAGCTCATCAGTATCAGC 60.181 47.826 0.00 0.00 0.00 4.26
3903 4683 5.898606 GCGAACATTCACGAGAAATAATCTG 59.101 40.000 0.00 0.00 38.96 2.90
4039 4820 2.758089 GCTGCGACATGAGCCAAGG 61.758 63.158 0.00 0.00 0.00 3.61
4050 4831 4.372999 GCCAAGGGCCCAAGAGCT 62.373 66.667 27.56 0.00 44.06 4.09
4051 4832 2.044551 CCAAGGGCCCAAGAGCTC 60.045 66.667 27.56 5.27 0.00 4.09
4052 4833 2.759114 CAAGGGCCCAAGAGCTCA 59.241 61.111 27.56 0.00 34.85 4.26
4126 4907 3.319405 CCTAGGAATAGCATCTCGTGTGT 59.681 47.826 1.05 0.00 0.00 3.72
4139 4920 3.445805 TCTCGTGTGTGCCTGTATTATGA 59.554 43.478 0.00 0.00 0.00 2.15
4215 5040 5.570234 TTTTTGGCACTTAGTCTCGTTTT 57.430 34.783 0.00 0.00 0.00 2.43
4216 5041 5.570234 TTTTGGCACTTAGTCTCGTTTTT 57.430 34.783 0.00 0.00 0.00 1.94
4242 5067 4.008330 TCGAGGTGTATTCGTCTCTCTTT 58.992 43.478 0.00 0.00 39.05 2.52
4243 5068 4.458295 TCGAGGTGTATTCGTCTCTCTTTT 59.542 41.667 0.00 0.00 39.05 2.27
4244 5069 4.559251 CGAGGTGTATTCGTCTCTCTTTTG 59.441 45.833 0.00 0.00 33.57 2.44
4248 5073 6.766467 AGGTGTATTCGTCTCTCTTTTGTTTT 59.234 34.615 0.00 0.00 0.00 2.43
4249 5074 6.851330 GGTGTATTCGTCTCTCTTTTGTTTTG 59.149 38.462 0.00 0.00 0.00 2.44
4250 5075 7.254658 GGTGTATTCGTCTCTCTTTTGTTTTGA 60.255 37.037 0.00 0.00 0.00 2.69
4252 5077 7.709182 TGTATTCGTCTCTCTTTTGTTTTGAGA 59.291 33.333 0.00 0.00 35.78 3.27
4253 5078 7.736447 ATTCGTCTCTCTTTTGTTTTGAGAT 57.264 32.000 0.00 0.00 36.43 2.75
4268 5437 6.483307 TGTTTTGAGATTGTGAATTCGTCTCT 59.517 34.615 20.73 12.45 36.98 3.10
4352 5531 2.430382 CTACACCCGTCCGTGCAACT 62.430 60.000 0.00 0.00 37.25 3.16
4356 5535 2.047274 CCGTCCGTGCAACTCCAT 60.047 61.111 0.00 0.00 31.75 3.41
4398 5577 1.730902 CTCACGTGGTGACTGAGCG 60.731 63.158 17.00 0.00 37.67 5.03
4456 6308 6.256975 GCTAAATTTCGTGTTTTGACCCTTTT 59.743 34.615 0.00 0.00 0.00 2.27
4499 6351 3.220940 ACCCCGGTTCGTAAAAATTTCA 58.779 40.909 0.00 0.00 0.00 2.69
4501 6353 3.502979 CCCCGGTTCGTAAAAATTTCAGA 59.497 43.478 0.00 0.00 0.00 3.27
4509 6361 8.290325 GGTTCGTAAAAATTTCAGAATCTGACT 58.710 33.333 13.17 0.38 40.46 3.41
4525 6377 2.996621 CTGACTCTTTCTTACCGCCAAG 59.003 50.000 0.00 0.00 0.00 3.61
4529 6381 0.322546 CTTTCTTACCGCCAAGGCCT 60.323 55.000 0.00 0.00 46.52 5.19
4561 6413 2.420408 GGTATAACAGCCTACCGCCAAA 60.420 50.000 0.00 0.00 38.78 3.28
4609 6461 2.040544 CCAAACAGGCTGGCGGTAG 61.041 63.158 20.34 3.91 0.00 3.18
4610 6462 2.040544 CAAACAGGCTGGCGGTAGG 61.041 63.158 20.34 0.00 0.00 3.18
4666 7104 2.633657 CCAGCGTGCACTGTGTTC 59.366 61.111 16.19 2.33 35.83 3.18
4667 7105 2.633657 CAGCGTGCACTGTGTTCC 59.366 61.111 16.19 0.00 32.78 3.62
4770 7231 1.884928 GCCTTGGCGGTAAGAAAAGGA 60.885 52.381 3.98 0.00 39.88 3.36
4774 7235 3.426787 TGGCGGTAAGAAAAGGATCAA 57.573 42.857 0.00 0.00 0.00 2.57
4780 7241 5.354234 GCGGTAAGAAAAGGATCAAATCTCA 59.646 40.000 0.00 0.00 0.00 3.27
4782 7243 7.574967 GCGGTAAGAAAAGGATCAAATCTCAAA 60.575 37.037 0.00 0.00 0.00 2.69
4783 7244 8.296713 CGGTAAGAAAAGGATCAAATCTCAAAA 58.703 33.333 0.00 0.00 0.00 2.44
4784 7245 9.981114 GGTAAGAAAAGGATCAAATCTCAAAAA 57.019 29.630 0.00 0.00 0.00 1.94
4849 7310 3.666797 GGTCAAAACACGAAATTTAGCCG 59.333 43.478 0.00 0.00 0.00 5.52
4850 7311 3.118972 GTCAAAACACGAAATTTAGCCGC 59.881 43.478 0.00 0.00 0.00 6.53
4851 7312 2.341318 AAACACGAAATTTAGCCGCC 57.659 45.000 0.00 0.00 0.00 6.13
4852 7313 1.240256 AACACGAAATTTAGCCGCCA 58.760 45.000 0.00 0.00 0.00 5.69
4853 7314 0.519961 ACACGAAATTTAGCCGCCAC 59.480 50.000 0.00 0.00 0.00 5.01
4854 7315 0.802494 CACGAAATTTAGCCGCCACT 59.198 50.000 0.00 0.00 0.00 4.00
4855 7316 1.084289 ACGAAATTTAGCCGCCACTC 58.916 50.000 0.00 0.00 0.00 3.51
4856 7317 0.026285 CGAAATTTAGCCGCCACTCG 59.974 55.000 0.00 0.00 38.08 4.18
4857 7318 1.084289 GAAATTTAGCCGCCACTCGT 58.916 50.000 0.00 0.00 36.19 4.18
4858 7319 0.802494 AAATTTAGCCGCCACTCGTG 59.198 50.000 0.00 0.00 36.19 4.35
4880 7342 1.938585 TGACAGCTAGTAGGCCTGTT 58.061 50.000 17.99 5.70 0.00 3.16
4881 7343 1.550524 TGACAGCTAGTAGGCCTGTTG 59.449 52.381 17.99 9.45 0.00 3.33
4882 7344 1.825474 GACAGCTAGTAGGCCTGTTGA 59.175 52.381 17.99 0.00 0.00 3.18
5023 7489 1.943116 CTGACTGCCCCTCTGTCTCG 61.943 65.000 0.00 0.00 42.19 4.04
5031 7497 1.254284 CCCTCTGTCTCGCTCACCTT 61.254 60.000 0.00 0.00 0.00 3.50
5032 7498 0.172352 CCTCTGTCTCGCTCACCTTC 59.828 60.000 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.037772 GCTCTGTTGGAAGTCAAGGAGA 59.962 50.000 10.55 0.00 38.00 3.71
9 10 2.038295 AGCTCTGTTGGAAGTCAAGGAG 59.962 50.000 0.00 0.00 38.39 3.69
10 11 2.050144 AGCTCTGTTGGAAGTCAAGGA 58.950 47.619 0.00 0.00 35.80 3.36
11 12 2.557920 AGCTCTGTTGGAAGTCAAGG 57.442 50.000 0.00 0.00 35.80 3.61
12 13 4.133078 AGAAAGCTCTGTTGGAAGTCAAG 58.867 43.478 0.00 0.00 35.80 3.02
13 14 4.156455 AGAAAGCTCTGTTGGAAGTCAA 57.844 40.909 0.00 0.00 0.00 3.18
14 15 3.845781 AGAAAGCTCTGTTGGAAGTCA 57.154 42.857 0.00 0.00 0.00 3.41
15 16 4.926832 GTCTAGAAAGCTCTGTTGGAAGTC 59.073 45.833 0.00 0.00 32.70 3.01
16 17 4.345257 TGTCTAGAAAGCTCTGTTGGAAGT 59.655 41.667 0.00 0.00 32.70 3.01
17 18 4.887748 TGTCTAGAAAGCTCTGTTGGAAG 58.112 43.478 0.00 0.00 32.70 3.46
18 19 4.262635 CCTGTCTAGAAAGCTCTGTTGGAA 60.263 45.833 4.17 0.00 32.70 3.53
19 20 3.259374 CCTGTCTAGAAAGCTCTGTTGGA 59.741 47.826 4.17 0.00 32.70 3.53
20 21 3.594134 CCTGTCTAGAAAGCTCTGTTGG 58.406 50.000 4.17 0.00 32.70 3.77
21 22 3.594134 CCCTGTCTAGAAAGCTCTGTTG 58.406 50.000 4.17 0.00 32.70 3.33
22 23 2.569404 CCCCTGTCTAGAAAGCTCTGTT 59.431 50.000 4.17 0.00 32.70 3.16
23 24 2.183679 CCCCTGTCTAGAAAGCTCTGT 58.816 52.381 4.17 0.00 32.70 3.41
24 25 2.461695 TCCCCTGTCTAGAAAGCTCTG 58.538 52.381 4.17 0.00 32.70 3.35
25 26 2.930109 TCCCCTGTCTAGAAAGCTCT 57.070 50.000 4.17 0.00 35.52 4.09
26 27 3.452627 TGATTCCCCTGTCTAGAAAGCTC 59.547 47.826 4.17 0.00 0.00 4.09
27 28 3.454858 TGATTCCCCTGTCTAGAAAGCT 58.545 45.455 4.17 0.00 0.00 3.74
28 29 3.914426 TGATTCCCCTGTCTAGAAAGC 57.086 47.619 4.17 0.00 0.00 3.51
29 30 5.994250 TCAATGATTCCCCTGTCTAGAAAG 58.006 41.667 2.55 2.55 0.00 2.62
30 31 6.387192 TTCAATGATTCCCCTGTCTAGAAA 57.613 37.500 0.00 0.00 0.00 2.52
31 32 6.581388 ATTCAATGATTCCCCTGTCTAGAA 57.419 37.500 0.00 0.00 0.00 2.10
32 33 6.581388 AATTCAATGATTCCCCTGTCTAGA 57.419 37.500 0.00 0.00 0.00 2.43
33 34 7.059156 AGAAATTCAATGATTCCCCTGTCTAG 58.941 38.462 0.00 0.00 0.00 2.43
34 35 6.973642 AGAAATTCAATGATTCCCCTGTCTA 58.026 36.000 0.00 0.00 0.00 2.59
35 36 5.835582 AGAAATTCAATGATTCCCCTGTCT 58.164 37.500 0.00 0.00 0.00 3.41
36 37 5.890419 AGAGAAATTCAATGATTCCCCTGTC 59.110 40.000 0.00 0.00 0.00 3.51
37 38 5.835582 AGAGAAATTCAATGATTCCCCTGT 58.164 37.500 0.00 0.00 0.00 4.00
38 39 6.786967 AAGAGAAATTCAATGATTCCCCTG 57.213 37.500 0.00 0.00 0.00 4.45
39 40 7.803487 AAAAGAGAAATTCAATGATTCCCCT 57.197 32.000 0.00 0.00 0.00 4.79
40 41 8.531146 TGTAAAAGAGAAATTCAATGATTCCCC 58.469 33.333 0.00 0.00 0.00 4.81
41 42 9.358872 GTGTAAAAGAGAAATTCAATGATTCCC 57.641 33.333 0.00 0.00 0.00 3.97
42 43 9.912634 TGTGTAAAAGAGAAATTCAATGATTCC 57.087 29.630 0.00 0.00 0.00 3.01
45 46 9.362539 GCATGTGTAAAAGAGAAATTCAATGAT 57.637 29.630 0.00 0.00 0.00 2.45
46 47 7.538334 CGCATGTGTAAAAGAGAAATTCAATGA 59.462 33.333 0.00 0.00 0.00 2.57
47 48 7.538334 TCGCATGTGTAAAAGAGAAATTCAATG 59.462 33.333 6.09 0.00 0.00 2.82
48 49 7.592938 TCGCATGTGTAAAAGAGAAATTCAAT 58.407 30.769 6.09 0.00 0.00 2.57
49 50 6.964908 TCGCATGTGTAAAAGAGAAATTCAA 58.035 32.000 6.09 0.00 0.00 2.69
50 51 6.552859 TCGCATGTGTAAAAGAGAAATTCA 57.447 33.333 6.09 0.00 0.00 2.57
51 52 8.604035 TCTATCGCATGTGTAAAAGAGAAATTC 58.396 33.333 6.09 0.00 0.00 2.17
52 53 8.492673 TCTATCGCATGTGTAAAAGAGAAATT 57.507 30.769 6.09 0.00 0.00 1.82
53 54 7.254590 GCTCTATCGCATGTGTAAAAGAGAAAT 60.255 37.037 22.22 5.14 32.76 2.17
54 55 6.036083 GCTCTATCGCATGTGTAAAAGAGAAA 59.964 38.462 22.22 0.00 32.76 2.52
55 56 5.520288 GCTCTATCGCATGTGTAAAAGAGAA 59.480 40.000 22.22 0.00 32.76 2.87
56 57 5.043903 GCTCTATCGCATGTGTAAAAGAGA 58.956 41.667 22.22 10.29 32.76 3.10
57 58 4.805719 TGCTCTATCGCATGTGTAAAAGAG 59.194 41.667 17.58 17.58 34.44 2.85
58 59 4.754322 TGCTCTATCGCATGTGTAAAAGA 58.246 39.130 6.09 4.65 34.44 2.52
83 84 2.825532 GGCAGCCAAGTATCTGGAAAAA 59.174 45.455 6.55 0.00 38.96 1.94
84 85 2.224992 TGGCAGCCAAGTATCTGGAAAA 60.225 45.455 13.33 0.00 38.96 2.29
85 86 1.354031 TGGCAGCCAAGTATCTGGAAA 59.646 47.619 13.33 0.00 38.96 3.13
86 87 0.991146 TGGCAGCCAAGTATCTGGAA 59.009 50.000 13.33 0.00 38.96 3.53
87 88 0.543277 CTGGCAGCCAAGTATCTGGA 59.457 55.000 17.03 0.00 38.96 3.86
88 89 1.099879 GCTGGCAGCCAAGTATCTGG 61.100 60.000 28.87 1.73 39.71 3.86
89 90 0.107312 AGCTGGCAGCCAAGTATCTG 60.107 55.000 34.33 2.56 43.77 2.90
90 91 1.500474 TAGCTGGCAGCCAAGTATCT 58.500 50.000 34.33 16.71 43.77 1.98
91 92 1.943340 GTTAGCTGGCAGCCAAGTATC 59.057 52.381 34.33 15.73 43.77 2.24
92 93 1.561542 AGTTAGCTGGCAGCCAAGTAT 59.438 47.619 34.33 18.20 43.77 2.12
93 94 0.984230 AGTTAGCTGGCAGCCAAGTA 59.016 50.000 34.33 18.24 43.77 2.24
94 95 0.111253 AAGTTAGCTGGCAGCCAAGT 59.889 50.000 34.33 26.91 43.77 3.16
95 96 1.740025 GTAAGTTAGCTGGCAGCCAAG 59.260 52.381 34.33 10.90 43.77 3.61
96 97 1.073125 TGTAAGTTAGCTGGCAGCCAA 59.927 47.619 34.33 25.66 43.77 4.52
97 98 0.690192 TGTAAGTTAGCTGGCAGCCA 59.310 50.000 34.33 20.77 43.77 4.75
98 99 1.468914 GTTGTAAGTTAGCTGGCAGCC 59.531 52.381 34.33 20.06 43.77 4.85
99 100 2.151202 TGTTGTAAGTTAGCTGGCAGC 58.849 47.619 31.56 31.56 42.84 5.25
100 101 5.376854 AATTGTTGTAAGTTAGCTGGCAG 57.623 39.130 10.94 10.94 0.00 4.85
101 102 5.527951 CAAATTGTTGTAAGTTAGCTGGCA 58.472 37.500 0.00 0.00 0.00 4.92
102 103 4.385748 GCAAATTGTTGTAAGTTAGCTGGC 59.614 41.667 0.00 0.00 37.06 4.85
103 104 5.772521 AGCAAATTGTTGTAAGTTAGCTGG 58.227 37.500 0.00 0.00 37.06 4.85
104 105 8.023128 ACATAGCAAATTGTTGTAAGTTAGCTG 58.977 33.333 0.00 0.00 37.06 4.24
105 106 8.110860 ACATAGCAAATTGTTGTAAGTTAGCT 57.889 30.769 0.00 0.00 37.06 3.32
106 107 8.742554 AACATAGCAAATTGTTGTAAGTTAGC 57.257 30.769 0.00 0.00 37.06 3.09
107 108 9.891828 TGAACATAGCAAATTGTTGTAAGTTAG 57.108 29.630 0.00 0.00 36.25 2.34
108 109 9.672086 GTGAACATAGCAAATTGTTGTAAGTTA 57.328 29.630 0.00 0.00 36.25 2.24
109 110 8.413229 AGTGAACATAGCAAATTGTTGTAAGTT 58.587 29.630 0.00 0.00 36.25 2.66
110 111 7.862372 CAGTGAACATAGCAAATTGTTGTAAGT 59.138 33.333 0.00 0.00 36.25 2.24
111 112 7.326789 CCAGTGAACATAGCAAATTGTTGTAAG 59.673 37.037 0.00 0.00 36.25 2.34
112 113 7.013750 TCCAGTGAACATAGCAAATTGTTGTAA 59.986 33.333 0.00 0.00 36.25 2.41
113 114 6.488344 TCCAGTGAACATAGCAAATTGTTGTA 59.512 34.615 0.00 0.00 36.25 2.41
114 115 5.301551 TCCAGTGAACATAGCAAATTGTTGT 59.698 36.000 0.00 0.00 36.25 3.32
115 116 5.771469 TCCAGTGAACATAGCAAATTGTTG 58.229 37.500 0.00 0.00 36.25 3.33
116 117 6.403866 TTCCAGTGAACATAGCAAATTGTT 57.596 33.333 0.00 0.00 38.71 2.83
117 118 6.403866 TTTCCAGTGAACATAGCAAATTGT 57.596 33.333 0.00 0.00 0.00 2.71
118 119 7.307337 GGTTTTTCCAGTGAACATAGCAAATTG 60.307 37.037 0.00 0.00 35.97 2.32
119 120 6.705825 GGTTTTTCCAGTGAACATAGCAAATT 59.294 34.615 0.00 0.00 35.97 1.82
120 121 6.223120 GGTTTTTCCAGTGAACATAGCAAAT 58.777 36.000 0.00 0.00 35.97 2.32
121 122 5.452636 GGGTTTTTCCAGTGAACATAGCAAA 60.453 40.000 0.00 0.00 38.11 3.68
122 123 4.038642 GGGTTTTTCCAGTGAACATAGCAA 59.961 41.667 0.00 0.00 38.11 3.91
123 124 3.572255 GGGTTTTTCCAGTGAACATAGCA 59.428 43.478 0.00 0.00 38.11 3.49
124 125 3.572255 TGGGTTTTTCCAGTGAACATAGC 59.428 43.478 0.00 0.00 38.11 2.97
125 126 5.336690 CCATGGGTTTTTCCAGTGAACATAG 60.337 44.000 2.85 0.00 40.56 2.23
126 127 4.526262 CCATGGGTTTTTCCAGTGAACATA 59.474 41.667 2.85 0.00 40.56 2.29
127 128 3.324556 CCATGGGTTTTTCCAGTGAACAT 59.675 43.478 2.85 0.00 40.56 2.71
128 129 2.697751 CCATGGGTTTTTCCAGTGAACA 59.302 45.455 2.85 0.00 40.56 3.18
129 130 2.698274 ACCATGGGTTTTTCCAGTGAAC 59.302 45.455 18.09 0.00 40.56 3.18
130 131 2.697751 CACCATGGGTTTTTCCAGTGAA 59.302 45.455 18.09 0.00 40.56 3.18
131 132 2.315176 CACCATGGGTTTTTCCAGTGA 58.685 47.619 18.09 0.00 40.56 3.41
132 133 2.038659 ACACCATGGGTTTTTCCAGTG 58.961 47.619 18.09 3.28 40.56 3.66
133 134 2.433970 CAACACCATGGGTTTTTCCAGT 59.566 45.455 18.09 0.00 40.56 4.00
134 135 2.433970 ACAACACCATGGGTTTTTCCAG 59.566 45.455 18.09 6.94 40.56 3.86
135 136 2.472029 ACAACACCATGGGTTTTTCCA 58.528 42.857 18.09 0.00 41.60 3.53
136 137 3.552132 AACAACACCATGGGTTTTTCC 57.448 42.857 18.09 0.00 31.02 3.13
137 138 4.257731 ACAAACAACACCATGGGTTTTTC 58.742 39.130 18.09 0.00 31.02 2.29
138 139 4.293662 ACAAACAACACCATGGGTTTTT 57.706 36.364 18.09 13.13 31.02 1.94
139 140 3.990959 ACAAACAACACCATGGGTTTT 57.009 38.095 18.09 7.74 31.02 2.43
144 145 3.130164 TCTCACAACAAACAACACCATGG 59.870 43.478 11.19 11.19 0.00 3.66
153 154 4.458989 GGGAAGCATATCTCACAACAAACA 59.541 41.667 0.00 0.00 0.00 2.83
180 181 8.046708 ACATAAGCACAATACTCACCTTTATCA 58.953 33.333 0.00 0.00 0.00 2.15
182 183 9.547753 CTACATAAGCACAATACTCACCTTTAT 57.452 33.333 0.00 0.00 0.00 1.40
225 226 8.388103 GCAAGATTCGCATAGAAGTTTAAGTAA 58.612 33.333 0.00 0.00 42.92 2.24
269 270 0.966179 TGCGTGTGACATACCTCTGT 59.034 50.000 0.00 0.00 0.00 3.41
283 284 3.772560 TGCGTGTATGCGTGCGTG 61.773 61.111 0.00 0.00 37.81 5.34
284 285 3.773630 GTGCGTGTATGCGTGCGT 61.774 61.111 0.00 0.00 37.81 5.24
285 286 4.826605 CGTGCGTGTATGCGTGCG 62.827 66.667 0.00 0.00 37.81 5.34
287 288 3.772560 TGCGTGCGTGTATGCGTG 61.773 61.111 0.00 0.00 37.81 5.34
288 289 3.773630 GTGCGTGCGTGTATGCGT 61.774 61.111 0.00 0.00 37.81 5.24
289 290 3.772560 TGTGCGTGCGTGTATGCG 61.773 61.111 0.00 0.00 37.81 4.73
290 291 2.202171 GTGTGCGTGCGTGTATGC 60.202 61.111 0.00 0.00 0.00 3.14
291 292 2.093799 CGTGTGCGTGCGTGTATG 59.906 61.111 0.00 0.00 0.00 2.39
292 293 3.773630 GCGTGTGCGTGCGTGTAT 61.774 61.111 0.00 0.00 40.81 2.29
316 317 0.096976 GAGTGTGTGTGTGTGTGCAC 59.903 55.000 10.75 10.75 45.44 4.57
317 318 1.024046 GGAGTGTGTGTGTGTGTGCA 61.024 55.000 0.00 0.00 0.00 4.57
318 319 0.744414 AGGAGTGTGTGTGTGTGTGC 60.744 55.000 0.00 0.00 0.00 4.57
319 320 1.737838 AAGGAGTGTGTGTGTGTGTG 58.262 50.000 0.00 0.00 0.00 3.82
320 321 2.487762 CAAAAGGAGTGTGTGTGTGTGT 59.512 45.455 0.00 0.00 0.00 3.72
321 322 2.746904 TCAAAAGGAGTGTGTGTGTGTG 59.253 45.455 0.00 0.00 0.00 3.82
348 349 9.515226 AGCAATCGCCCTATTTATAAAAAGATA 57.485 29.630 1.21 0.00 39.83 1.98
349 350 8.409358 AGCAATCGCCCTATTTATAAAAAGAT 57.591 30.769 1.21 0.00 39.83 2.40
362 363 1.327690 AAGGACGAGCAATCGCCCTA 61.328 55.000 5.93 0.00 44.99 3.53
364 365 0.876342 CTAAGGACGAGCAATCGCCC 60.876 60.000 0.00 0.00 39.83 6.13
366 367 1.201343 GTCTAAGGACGAGCAATCGC 58.799 55.000 0.00 0.00 36.44 4.58
415 416 4.615223 GCCTAACGCATGTCTCGATATACA 60.615 45.833 0.00 0.00 37.47 2.29
416 417 3.852536 GCCTAACGCATGTCTCGATATAC 59.147 47.826 0.00 0.00 37.47 1.47
417 418 3.504520 TGCCTAACGCATGTCTCGATATA 59.495 43.478 0.00 0.00 44.64 0.86
418 419 2.296190 TGCCTAACGCATGTCTCGATAT 59.704 45.455 0.00 0.00 44.64 1.63
419 420 1.679153 TGCCTAACGCATGTCTCGATA 59.321 47.619 0.00 0.00 44.64 2.92
420 421 0.459899 TGCCTAACGCATGTCTCGAT 59.540 50.000 0.00 0.00 44.64 3.59
421 422 1.887301 TGCCTAACGCATGTCTCGA 59.113 52.632 0.00 0.00 44.64 4.04
433 437 4.430007 CTCTACTATTGCACGTTGCCTAA 58.570 43.478 7.38 0.00 44.23 2.69
434 438 3.181479 CCTCTACTATTGCACGTTGCCTA 60.181 47.826 7.38 0.41 44.23 3.93
442 446 6.270815 TGTATCGAAACCTCTACTATTGCAC 58.729 40.000 0.00 0.00 0.00 4.57
460 464 2.097466 GGTCATTGTTGGCCTTGTATCG 59.903 50.000 3.32 0.00 44.72 2.92
534 538 0.251209 AGCTAGGGTGGCGATCGATA 60.251 55.000 21.57 3.07 34.52 2.92
538 542 2.336809 CGAGCTAGGGTGGCGATC 59.663 66.667 0.00 0.00 34.52 3.69
539 543 2.442272 ACGAGCTAGGGTGGCGAT 60.442 61.111 0.00 0.00 34.52 4.58
631 635 0.103208 CTGCCTCGCCTAGAATCGTT 59.897 55.000 0.00 0.00 0.00 3.85
649 653 2.624364 TCAAACTGCACACAATCATGCT 59.376 40.909 0.00 0.00 42.55 3.79
653 657 2.350676 GCGATCAAACTGCACACAATCA 60.351 45.455 0.00 0.00 0.00 2.57
860 963 1.747355 CTCCCACATTTGAGCACCATC 59.253 52.381 0.00 0.00 0.00 3.51
994 1101 2.507769 GAGCGCCTGCATTTTGGC 60.508 61.111 2.29 4.64 46.23 4.52
1074 1181 4.804420 AGGGGATGGCTGGCGAGA 62.804 66.667 0.00 0.00 0.00 4.04
1518 1858 5.183904 ACATTTCAGCAATTTCCCTGTACTC 59.816 40.000 0.00 0.00 0.00 2.59
1551 1891 9.114952 TCTATCTATGATATCTTTAGCGTCCAG 57.885 37.037 3.98 0.00 0.00 3.86
1611 1951 1.022735 CATGGAATGCTCAGTGAGGC 58.977 55.000 21.54 13.79 37.62 4.70
1632 1972 2.058829 AAACGAAACCAGCAGGCACG 62.059 55.000 0.00 1.28 39.06 5.34
1682 2028 2.907910 AAGCGCACTAGCAAATTCAG 57.092 45.000 11.47 0.00 42.27 3.02
1686 2032 4.876107 ACAGTTATAAGCGCACTAGCAAAT 59.124 37.500 11.47 0.00 42.27 2.32
1821 2168 8.891720 AGCAAAATCACAAACATACAATTTTGT 58.108 25.926 15.62 1.08 44.84 2.83
1836 2183 2.284754 TGGGCACTAGCAAAATCACA 57.715 45.000 0.00 0.00 44.61 3.58
1902 2253 4.386711 GGAGCGCTGTATTTATTAACCCT 58.613 43.478 18.48 0.00 0.00 4.34
2037 2388 6.260050 CAGTTTGTTCACTAAAAGTAGGAGCA 59.740 38.462 0.00 0.00 0.00 4.26
2082 2434 7.168135 GGAAAAGAAGAACATTGTCACAATGTC 59.832 37.037 31.60 23.96 39.73 3.06
2134 2486 1.382522 CCAGCATCACGCAGGTTAAT 58.617 50.000 0.00 0.00 46.13 1.40
2624 3103 7.946381 AGACAGATAAGTACACAAGATGAGA 57.054 36.000 0.00 0.00 0.00 3.27
2789 3285 1.213926 GGAGCCTGGAAATCAGTCCAT 59.786 52.381 0.00 0.00 46.66 3.41
2873 3369 1.275010 TGCATACCGAGAACAGCTGAA 59.725 47.619 23.35 0.00 0.00 3.02
2874 3370 0.894835 TGCATACCGAGAACAGCTGA 59.105 50.000 23.35 0.00 0.00 4.26
2963 3459 0.396974 AAACAGGACTTTGGCCAGCA 60.397 50.000 5.11 0.00 0.00 4.41
3031 3527 8.282592 CACTTTCAGAATTCAGAAATACGAACA 58.717 33.333 21.81 2.74 32.28 3.18
3075 3573 9.282247 GAGTAATGTGTGTCATCAAAATTCATC 57.718 33.333 0.00 0.00 35.48 2.92
3089 3670 8.314021 TGATCTTGATTGTAGAGTAATGTGTGT 58.686 33.333 0.00 0.00 0.00 3.72
3204 3825 4.160439 TGCAGTACAGATTTGGTCCTAGAG 59.840 45.833 0.00 0.00 0.00 2.43
3226 3847 4.821805 ACAACAGACAAACCAGGACTATTG 59.178 41.667 0.00 0.00 0.00 1.90
3270 4032 5.485708 AGTCCTAGAGCACCTTCTTTACAAT 59.514 40.000 0.00 0.00 0.00 2.71
3271 4033 4.838986 AGTCCTAGAGCACCTTCTTTACAA 59.161 41.667 0.00 0.00 0.00 2.41
3272 4034 4.417437 AGTCCTAGAGCACCTTCTTTACA 58.583 43.478 0.00 0.00 0.00 2.41
3273 4035 6.071503 TGTTAGTCCTAGAGCACCTTCTTTAC 60.072 42.308 0.00 0.00 0.00 2.01
3274 4036 6.014647 TGTTAGTCCTAGAGCACCTTCTTTA 58.985 40.000 0.00 0.00 0.00 1.85
3275 4037 4.838986 TGTTAGTCCTAGAGCACCTTCTTT 59.161 41.667 0.00 0.00 0.00 2.52
3276 4038 4.417437 TGTTAGTCCTAGAGCACCTTCTT 58.583 43.478 0.00 0.00 0.00 2.52
3277 4039 4.048970 TGTTAGTCCTAGAGCACCTTCT 57.951 45.455 0.00 0.00 0.00 2.85
3278 4040 4.402793 TGATGTTAGTCCTAGAGCACCTTC 59.597 45.833 0.00 0.00 0.00 3.46
3279 4041 4.353777 TGATGTTAGTCCTAGAGCACCTT 58.646 43.478 0.00 0.00 0.00 3.50
3280 4042 3.982516 TGATGTTAGTCCTAGAGCACCT 58.017 45.455 0.00 0.00 0.00 4.00
3281 4043 4.737855 TTGATGTTAGTCCTAGAGCACC 57.262 45.455 0.00 0.00 0.00 5.01
3282 4044 6.398918 TCTTTTGATGTTAGTCCTAGAGCAC 58.601 40.000 0.00 0.00 0.00 4.40
3283 4045 6.605471 TCTTTTGATGTTAGTCCTAGAGCA 57.395 37.500 0.00 0.00 0.00 4.26
3284 4046 8.499403 AATTCTTTTGATGTTAGTCCTAGAGC 57.501 34.615 0.00 0.00 0.00 4.09
3285 4047 9.658799 TGAATTCTTTTGATGTTAGTCCTAGAG 57.341 33.333 7.05 0.00 0.00 2.43
3286 4048 9.658799 CTGAATTCTTTTGATGTTAGTCCTAGA 57.341 33.333 7.05 0.00 0.00 2.43
3287 4049 9.442047 ACTGAATTCTTTTGATGTTAGTCCTAG 57.558 33.333 7.05 0.00 0.00 3.02
3288 4050 9.793259 AACTGAATTCTTTTGATGTTAGTCCTA 57.207 29.630 7.05 0.00 0.00 2.94
3289 4051 8.697507 AACTGAATTCTTTTGATGTTAGTCCT 57.302 30.769 7.05 0.00 0.00 3.85
3290 4052 9.399403 GAAACTGAATTCTTTTGATGTTAGTCC 57.601 33.333 7.05 0.00 0.00 3.85
3291 4053 9.950680 TGAAACTGAATTCTTTTGATGTTAGTC 57.049 29.630 7.05 0.00 0.00 2.59
3295 4057 9.415544 GCTATGAAACTGAATTCTTTTGATGTT 57.584 29.630 7.05 0.00 0.00 2.71
3296 4058 7.752239 CGCTATGAAACTGAATTCTTTTGATGT 59.248 33.333 7.05 0.00 0.00 3.06
3297 4059 7.253552 GCGCTATGAAACTGAATTCTTTTGATG 60.254 37.037 7.05 3.49 0.00 3.07
3298 4060 6.749118 GCGCTATGAAACTGAATTCTTTTGAT 59.251 34.615 7.05 8.29 0.00 2.57
3299 4061 6.086222 GCGCTATGAAACTGAATTCTTTTGA 58.914 36.000 7.05 1.27 0.00 2.69
3300 4062 5.858049 TGCGCTATGAAACTGAATTCTTTTG 59.142 36.000 9.73 0.00 0.00 2.44
3301 4063 5.858581 GTGCGCTATGAAACTGAATTCTTTT 59.141 36.000 9.73 6.20 0.00 2.27
3302 4064 5.048782 TGTGCGCTATGAAACTGAATTCTTT 60.049 36.000 9.73 0.00 0.00 2.52
3303 4065 4.455533 TGTGCGCTATGAAACTGAATTCTT 59.544 37.500 9.73 0.00 0.00 2.52
3304 4066 4.002982 TGTGCGCTATGAAACTGAATTCT 58.997 39.130 9.73 0.00 0.00 2.40
3305 4067 4.340894 TGTGCGCTATGAAACTGAATTC 57.659 40.909 9.73 0.00 0.00 2.17
3306 4068 4.764679 TTGTGCGCTATGAAACTGAATT 57.235 36.364 9.73 0.00 0.00 2.17
3307 4069 4.637534 AGATTGTGCGCTATGAAACTGAAT 59.362 37.500 9.73 0.00 0.00 2.57
3308 4070 4.002982 AGATTGTGCGCTATGAAACTGAA 58.997 39.130 9.73 0.00 0.00 3.02
3309 4071 3.371898 CAGATTGTGCGCTATGAAACTGA 59.628 43.478 9.73 0.00 0.00 3.41
3310 4072 3.371898 TCAGATTGTGCGCTATGAAACTG 59.628 43.478 9.73 10.05 0.00 3.16
3347 4109 0.822121 ACGGGCAAAGTTTGGAGGAC 60.822 55.000 17.11 0.00 0.00 3.85
3384 4146 5.109903 AGCTACGGAATGTTCACTGTATTC 58.890 41.667 0.00 0.00 0.00 1.75
3401 4163 7.331193 AGTTTAGAATCCACAAAACTAGCTACG 59.669 37.037 0.00 0.00 39.67 3.51
3405 4167 8.451748 CCTAAGTTTAGAATCCACAAAACTAGC 58.548 37.037 0.51 0.00 40.35 3.42
3407 4169 8.161425 AGCCTAAGTTTAGAATCCACAAAACTA 58.839 33.333 0.51 0.00 40.35 2.24
3422 4184 1.538075 GCCAAACGCAGCCTAAGTTTA 59.462 47.619 0.00 0.00 36.46 2.01
3457 4219 1.568597 CTGGGGTGAATGGGGTTATGA 59.431 52.381 0.00 0.00 0.00 2.15
3463 4225 4.820744 CGGCTGGGGTGAATGGGG 62.821 72.222 0.00 0.00 0.00 4.96
3467 4229 1.228862 AAAAGCGGCTGGGGTGAAT 60.229 52.632 1.81 0.00 0.00 2.57
3477 4239 0.318699 GTGAAACAGGGAAAAGCGGC 60.319 55.000 0.00 0.00 36.32 6.53
3480 4242 3.801114 AACAGTGAAACAGGGAAAAGC 57.199 42.857 0.00 0.00 41.43 3.51
3494 4256 2.801063 CAGTGGCTCAAACAAACAGTG 58.199 47.619 0.00 0.00 0.00 3.66
3496 4258 1.843992 GCAGTGGCTCAAACAAACAG 58.156 50.000 0.00 0.00 36.96 3.16
3511 4273 0.684153 ACACAAAAGTGGGCAGCAGT 60.684 50.000 0.00 0.00 0.00 4.40
3515 4277 2.957491 TTTGACACAAAAGTGGGCAG 57.043 45.000 0.38 0.00 0.00 4.85
3541 4303 9.507280 CTGTGCTTATTTTATAATCTGTTGTGG 57.493 33.333 0.00 0.00 0.00 4.17
3546 4308 9.378551 TCGTTCTGTGCTTATTTTATAATCTGT 57.621 29.630 0.00 0.00 0.00 3.41
3567 4329 2.096909 CGGTTGATGAACTGTGTCGTTC 60.097 50.000 0.00 0.00 42.73 3.95
3568 4330 1.864711 CGGTTGATGAACTGTGTCGTT 59.135 47.619 0.00 0.00 34.21 3.85
3571 4333 1.225855 TGCGGTTGATGAACTGTGTC 58.774 50.000 5.74 0.00 40.20 3.67
3594 4356 5.447624 AAAAATTGGGTGGTTAAGACTCG 57.552 39.130 0.00 0.00 0.00 4.18
3635 4408 9.174166 ACTCGTAAGCATTTTTCCTTAATACAT 57.826 29.630 0.00 0.00 37.18 2.29
3636 4409 8.556213 ACTCGTAAGCATTTTTCCTTAATACA 57.444 30.769 0.00 0.00 37.18 2.29
3637 4410 9.486857 GAACTCGTAAGCATTTTTCCTTAATAC 57.513 33.333 0.00 0.00 37.18 1.89
3642 4415 5.030874 CGAACTCGTAAGCATTTTTCCTT 57.969 39.130 0.00 0.00 37.18 3.36
3669 4444 4.184629 GAGTACTTCGCAATCAGGAATGT 58.815 43.478 0.00 0.00 0.00 2.71
3670 4446 3.557595 GGAGTACTTCGCAATCAGGAATG 59.442 47.826 0.00 0.00 0.00 2.67
3674 4450 1.482593 AGGGAGTACTTCGCAATCAGG 59.517 52.381 0.00 0.00 41.01 3.86
3677 4453 1.536284 CGGAGGGAGTACTTCGCAATC 60.536 57.143 0.00 0.00 41.01 2.67
3689 4465 7.498443 GTTATTATATTATGGGACGGAGGGAG 58.502 42.308 0.00 0.00 0.00 4.30
3690 4466 6.097270 CGTTATTATATTATGGGACGGAGGGA 59.903 42.308 0.00 0.00 0.00 4.20
3691 4467 6.278363 CGTTATTATATTATGGGACGGAGGG 58.722 44.000 0.00 0.00 0.00 4.30
3692 4468 5.751990 GCGTTATTATATTATGGGACGGAGG 59.248 44.000 0.00 0.00 0.00 4.30
3693 4469 6.570692 AGCGTTATTATATTATGGGACGGAG 58.429 40.000 0.00 0.00 0.00 4.63
3694 4470 6.534475 AGCGTTATTATATTATGGGACGGA 57.466 37.500 0.00 0.00 0.00 4.69
3695 4471 7.605410 AAAGCGTTATTATATTATGGGACGG 57.395 36.000 0.00 0.00 0.00 4.79
3696 4472 8.714179 TGAAAAGCGTTATTATATTATGGGACG 58.286 33.333 0.00 0.00 0.00 4.79
3719 4495 8.825667 AGTTTTTCAAACTAACAAAGCTTGAA 57.174 26.923 0.00 0.00 44.60 2.69
3720 4496 8.825667 AAGTTTTTCAAACTAACAAAGCTTGA 57.174 26.923 0.00 0.00 38.28 3.02
3721 4497 9.528847 GAAAGTTTTTCAAACTAACAAAGCTTG 57.471 29.630 0.00 0.00 32.16 4.01
3722 4498 9.489084 AGAAAGTTTTTCAAACTAACAAAGCTT 57.511 25.926 2.36 0.00 32.86 3.74
3723 4499 9.489084 AAGAAAGTTTTTCAAACTAACAAAGCT 57.511 25.926 2.36 0.00 0.00 3.74
3740 4516 9.853177 CCTCAGTCCCATAATATAAGAAAGTTT 57.147 33.333 0.00 0.00 0.00 2.66
3741 4517 8.440771 CCCTCAGTCCCATAATATAAGAAAGTT 58.559 37.037 0.00 0.00 0.00 2.66
3742 4518 7.794683 TCCCTCAGTCCCATAATATAAGAAAGT 59.205 37.037 0.00 0.00 0.00 2.66
3743 4519 8.207350 TCCCTCAGTCCCATAATATAAGAAAG 57.793 38.462 0.00 0.00 0.00 2.62
3744 4520 7.794683 ACTCCCTCAGTCCCATAATATAAGAAA 59.205 37.037 0.00 0.00 0.00 2.52
3745 4521 7.313731 ACTCCCTCAGTCCCATAATATAAGAA 58.686 38.462 0.00 0.00 0.00 2.52
3746 4522 6.875469 ACTCCCTCAGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
3747 4523 7.896496 AGTACTCCCTCAGTCCCATAATATAAG 59.104 40.741 0.00 0.00 36.43 1.73
3748 4524 7.776745 AGTACTCCCTCAGTCCCATAATATAA 58.223 38.462 0.00 0.00 36.43 0.98
3749 4525 7.358255 AGTACTCCCTCAGTCCCATAATATA 57.642 40.000 0.00 0.00 36.43 0.86
3750 4526 6.234404 AGTACTCCCTCAGTCCCATAATAT 57.766 41.667 0.00 0.00 36.43 1.28
3751 4527 5.681494 AGTACTCCCTCAGTCCCATAATA 57.319 43.478 0.00 0.00 36.43 0.98
3752 4528 4.561254 AGTACTCCCTCAGTCCCATAAT 57.439 45.455 0.00 0.00 36.43 1.28
3753 4529 5.195146 TCTTAGTACTCCCTCAGTCCCATAA 59.805 44.000 0.00 0.00 36.43 1.90
3754 4530 4.730392 TCTTAGTACTCCCTCAGTCCCATA 59.270 45.833 0.00 0.00 36.43 2.74
3755 4531 3.532232 TCTTAGTACTCCCTCAGTCCCAT 59.468 47.826 0.00 0.00 36.43 4.00
3756 4532 2.924302 TCTTAGTACTCCCTCAGTCCCA 59.076 50.000 0.00 0.00 36.43 4.37
3757 4533 3.666345 TCTTAGTACTCCCTCAGTCCC 57.334 52.381 0.00 0.00 36.43 4.46
3758 4534 5.018149 AGTTTCTTAGTACTCCCTCAGTCC 58.982 45.833 0.00 0.00 36.43 3.85
3759 4535 7.885009 ATAGTTTCTTAGTACTCCCTCAGTC 57.115 40.000 0.00 0.00 36.43 3.51
3760 4536 9.765295 TTTATAGTTTCTTAGTACTCCCTCAGT 57.235 33.333 0.00 0.00 39.41 3.41
3762 4538 8.975295 GGTTTATAGTTTCTTAGTACTCCCTCA 58.025 37.037 0.00 0.00 0.00 3.86
3763 4539 8.134261 CGGTTTATAGTTTCTTAGTACTCCCTC 58.866 40.741 0.00 0.00 0.00 4.30
3764 4540 7.069208 CCGGTTTATAGTTTCTTAGTACTCCCT 59.931 40.741 0.00 0.00 0.00 4.20
3765 4541 7.068716 TCCGGTTTATAGTTTCTTAGTACTCCC 59.931 40.741 0.00 0.00 0.00 4.30
3766 4542 8.000780 TCCGGTTTATAGTTTCTTAGTACTCC 57.999 38.462 0.00 0.00 0.00 3.85
3767 4543 9.513727 CTTCCGGTTTATAGTTTCTTAGTACTC 57.486 37.037 0.00 0.00 0.00 2.59
3768 4544 9.247861 TCTTCCGGTTTATAGTTTCTTAGTACT 57.752 33.333 0.00 0.00 0.00 2.73
3769 4545 9.513727 CTCTTCCGGTTTATAGTTTCTTAGTAC 57.486 37.037 0.00 0.00 0.00 2.73
3770 4546 8.689972 CCTCTTCCGGTTTATAGTTTCTTAGTA 58.310 37.037 0.00 0.00 0.00 1.82
3771 4547 7.179872 ACCTCTTCCGGTTTATAGTTTCTTAGT 59.820 37.037 0.00 0.00 31.94 2.24
3772 4548 7.554211 ACCTCTTCCGGTTTATAGTTTCTTAG 58.446 38.462 0.00 0.00 31.94 2.18
3773 4549 7.486407 ACCTCTTCCGGTTTATAGTTTCTTA 57.514 36.000 0.00 0.00 31.94 2.10
3774 4550 6.370186 ACCTCTTCCGGTTTATAGTTTCTT 57.630 37.500 0.00 0.00 31.94 2.52
3775 4551 6.666980 ACTACCTCTTCCGGTTTATAGTTTCT 59.333 38.462 0.00 0.00 38.49 2.52
3776 4552 6.755607 CACTACCTCTTCCGGTTTATAGTTTC 59.244 42.308 0.00 0.00 38.49 2.78
3777 4553 6.351626 CCACTACCTCTTCCGGTTTATAGTTT 60.352 42.308 0.00 0.00 38.49 2.66
3778 4554 5.128335 CCACTACCTCTTCCGGTTTATAGTT 59.872 44.000 0.00 0.00 38.49 2.24
3779 4555 4.648307 CCACTACCTCTTCCGGTTTATAGT 59.352 45.833 0.00 0.75 38.49 2.12
3780 4556 4.891756 TCCACTACCTCTTCCGGTTTATAG 59.108 45.833 0.00 0.09 38.49 1.31
3781 4557 4.870636 TCCACTACCTCTTCCGGTTTATA 58.129 43.478 0.00 0.00 38.49 0.98
3782 4558 3.716431 TCCACTACCTCTTCCGGTTTAT 58.284 45.455 0.00 0.00 38.49 1.40
3783 4559 3.173953 TCCACTACCTCTTCCGGTTTA 57.826 47.619 0.00 0.00 38.49 2.01
3784 4560 2.019807 TCCACTACCTCTTCCGGTTT 57.980 50.000 0.00 0.00 38.49 3.27
3785 4561 2.019807 TTCCACTACCTCTTCCGGTT 57.980 50.000 0.00 0.00 38.49 4.44
3786 4562 2.249309 ATTCCACTACCTCTTCCGGT 57.751 50.000 0.00 0.00 41.10 5.28
3787 4563 3.705072 AGTAATTCCACTACCTCTTCCGG 59.295 47.826 0.00 0.00 0.00 5.14
3788 4564 4.401519 TCAGTAATTCCACTACCTCTTCCG 59.598 45.833 0.00 0.00 0.00 4.30
3789 4565 5.934402 TCAGTAATTCCACTACCTCTTCC 57.066 43.478 0.00 0.00 0.00 3.46
3790 4566 6.937392 ACTTCAGTAATTCCACTACCTCTTC 58.063 40.000 0.00 0.00 0.00 2.87
3791 4567 6.936968 ACTTCAGTAATTCCACTACCTCTT 57.063 37.500 0.00 0.00 0.00 2.85
3792 4568 6.497259 TCAACTTCAGTAATTCCACTACCTCT 59.503 38.462 0.00 0.00 0.00 3.69
3793 4569 6.698380 TCAACTTCAGTAATTCCACTACCTC 58.302 40.000 0.00 0.00 0.00 3.85
3794 4570 6.681729 TCAACTTCAGTAATTCCACTACCT 57.318 37.500 0.00 0.00 0.00 3.08
3795 4571 7.923414 ATTCAACTTCAGTAATTCCACTACC 57.077 36.000 0.00 0.00 0.00 3.18
3796 4572 7.750903 GCAATTCAACTTCAGTAATTCCACTAC 59.249 37.037 0.00 0.00 0.00 2.73
3797 4573 7.665559 AGCAATTCAACTTCAGTAATTCCACTA 59.334 33.333 0.00 0.00 0.00 2.74
3798 4574 6.491403 AGCAATTCAACTTCAGTAATTCCACT 59.509 34.615 0.00 0.00 0.00 4.00
3799 4575 6.681777 AGCAATTCAACTTCAGTAATTCCAC 58.318 36.000 0.00 0.00 0.00 4.02
3800 4576 6.899393 AGCAATTCAACTTCAGTAATTCCA 57.101 33.333 0.00 0.00 0.00 3.53
3801 4577 9.294030 CATAAGCAATTCAACTTCAGTAATTCC 57.706 33.333 0.00 0.00 0.00 3.01
3804 4580 7.972277 CAGCATAAGCAATTCAACTTCAGTAAT 59.028 33.333 0.00 0.00 45.49 1.89
3857 4633 4.361420 CTGATACTGATGAGCTGTGAGTG 58.639 47.826 0.00 0.00 0.00 3.51
3865 4641 2.814269 TGTTCGCTGATACTGATGAGC 58.186 47.619 0.00 0.00 38.80 4.26
3869 4645 3.798878 CGTGAATGTTCGCTGATACTGAT 59.201 43.478 4.96 0.00 35.61 2.90
3880 4660 7.113658 GTCAGATTATTTCTCGTGAATGTTCG 58.886 38.462 0.02 0.00 29.93 3.95
3903 4683 3.927142 CACGGTGAGGATTAAAGACTGTC 59.073 47.826 0.74 0.00 0.00 3.51
3933 4714 2.683968 GACAGTATGGTGTTCGCTGAA 58.316 47.619 0.00 0.00 43.62 3.02
4039 4820 1.748500 GCTCTTGAGCTCTTGGGCC 60.749 63.158 16.19 0.00 0.00 5.80
4045 4826 0.903924 TCCAGCAGCTCTTGAGCTCT 60.904 55.000 20.77 16.98 44.30 4.09
4046 4827 0.178533 ATCCAGCAGCTCTTGAGCTC 59.821 55.000 20.77 6.82 44.30 4.09
4048 4829 1.015868 GAATCCAGCAGCTCTTGAGC 58.984 55.000 14.16 14.16 0.00 4.26
4049 4830 1.209990 AGGAATCCAGCAGCTCTTGAG 59.790 52.381 0.61 0.00 0.00 3.02
4050 4831 1.283347 AGGAATCCAGCAGCTCTTGA 58.717 50.000 0.61 0.00 0.00 3.02
4051 4832 2.125773 AAGGAATCCAGCAGCTCTTG 57.874 50.000 0.61 0.00 0.00 3.02
4052 4833 2.895242 AAAGGAATCCAGCAGCTCTT 57.105 45.000 0.61 0.00 0.00 2.85
4126 4907 6.037062 CGAAATGTCAAGTCATAATACAGGCA 59.963 38.462 0.00 0.00 0.00 4.75
4139 4920 5.619981 GCTCATTTAAGCCGAAATGTCAAGT 60.620 40.000 16.43 0.00 44.02 3.16
4216 5041 5.048224 AGAGAGACGAATACACCTCGAAAAA 60.048 40.000 0.00 0.00 39.60 1.94
4218 5043 4.008330 AGAGAGACGAATACACCTCGAAA 58.992 43.478 0.00 0.00 39.60 3.46
4219 5044 3.607741 AGAGAGACGAATACACCTCGAA 58.392 45.455 0.00 0.00 39.60 3.71
4220 5045 3.263489 AGAGAGACGAATACACCTCGA 57.737 47.619 0.00 0.00 39.60 4.04
4221 5046 4.358494 AAAGAGAGACGAATACACCTCG 57.642 45.455 0.00 0.00 42.06 4.63
4223 5048 5.470047 ACAAAAGAGAGACGAATACACCT 57.530 39.130 0.00 0.00 0.00 4.00
4224 5049 6.541111 AAACAAAAGAGAGACGAATACACC 57.459 37.500 0.00 0.00 0.00 4.16
4225 5050 7.627340 TCAAAACAAAAGAGAGACGAATACAC 58.373 34.615 0.00 0.00 0.00 2.90
4226 5051 7.709182 TCTCAAAACAAAAGAGAGACGAATACA 59.291 33.333 0.00 0.00 33.75 2.29
4227 5052 8.073355 TCTCAAAACAAAAGAGAGACGAATAC 57.927 34.615 0.00 0.00 33.75 1.89
4229 5054 7.736447 ATCTCAAAACAAAAGAGAGACGAAT 57.264 32.000 0.00 0.00 41.27 3.34
4230 5055 7.065803 ACAATCTCAAAACAAAAGAGAGACGAA 59.934 33.333 0.00 0.00 41.27 3.85
4231 5056 6.538742 ACAATCTCAAAACAAAAGAGAGACGA 59.461 34.615 0.00 0.00 41.27 4.20
4232 5057 6.630443 CACAATCTCAAAACAAAAGAGAGACG 59.370 38.462 0.00 0.00 41.27 4.18
4233 5058 7.697691 TCACAATCTCAAAACAAAAGAGAGAC 58.302 34.615 0.00 0.00 41.27 3.36
4234 5059 7.864108 TCACAATCTCAAAACAAAAGAGAGA 57.136 32.000 0.00 0.00 41.27 3.10
4236 5061 9.520204 GAATTCACAATCTCAAAACAAAAGAGA 57.480 29.630 0.00 0.00 42.08 3.10
4237 5062 8.474577 CGAATTCACAATCTCAAAACAAAAGAG 58.525 33.333 6.22 0.00 0.00 2.85
4242 5067 7.012327 AGAGACGAATTCACAATCTCAAAACAA 59.988 33.333 19.88 0.00 38.62 2.83
4243 5068 6.483307 AGAGACGAATTCACAATCTCAAAACA 59.517 34.615 19.88 0.00 38.62 2.83
4244 5069 6.892691 AGAGACGAATTCACAATCTCAAAAC 58.107 36.000 19.88 3.04 38.62 2.43
4248 5073 5.409520 CCAAAGAGACGAATTCACAATCTCA 59.590 40.000 19.88 0.00 38.62 3.27
4249 5074 5.409826 ACCAAAGAGACGAATTCACAATCTC 59.590 40.000 6.22 11.12 36.80 2.75
4250 5075 5.180117 CACCAAAGAGACGAATTCACAATCT 59.820 40.000 6.22 2.46 0.00 2.40
4252 5077 4.216257 CCACCAAAGAGACGAATTCACAAT 59.784 41.667 6.22 0.00 0.00 2.71
4253 5078 3.563808 CCACCAAAGAGACGAATTCACAA 59.436 43.478 6.22 0.00 0.00 3.33
4268 5437 0.333312 ACCAACAGTCCACCACCAAA 59.667 50.000 0.00 0.00 0.00 3.28
4337 5516 4.309950 GGAGTTGCACGGACGGGT 62.310 66.667 0.00 0.00 0.00 5.28
4352 5531 2.741985 CGTGCGACTGCCAATGGA 60.742 61.111 2.05 0.00 41.78 3.41
4398 5577 3.683340 GGTACTCCGGAATTCAACTGTTC 59.317 47.826 5.23 0.00 0.00 3.18
4456 6308 5.067936 GGTCAGATCTCGAATAGGTTTCAGA 59.932 44.000 0.00 0.00 0.00 3.27
4499 6351 4.382147 GGCGGTAAGAAAGAGTCAGATTCT 60.382 45.833 0.00 0.00 35.00 2.40
4501 6353 3.260884 TGGCGGTAAGAAAGAGTCAGATT 59.739 43.478 0.00 0.00 0.00 2.40
4509 6361 0.322187 GGCCTTGGCGGTAAGAAAGA 60.322 55.000 5.49 0.00 34.25 2.52
4609 6461 1.449070 GCGGTAGGGTTGTACAGCC 60.449 63.158 19.77 19.77 44.40 4.85
4610 6462 1.449070 GGCGGTAGGGTTGTACAGC 60.449 63.158 0.27 0.27 41.68 4.40
4650 7088 2.179547 TGGAACACAGTGCACGCTG 61.180 57.895 12.01 12.88 41.92 5.18
4750 7211 0.526211 CCTTTTCTTACCGCCAAGGC 59.474 55.000 0.00 0.00 46.52 4.35
4782 7243 4.810345 TCTGACCCTGGTTGGTAAATTTT 58.190 39.130 0.00 0.00 39.24 1.82
4783 7244 4.463050 TCTGACCCTGGTTGGTAAATTT 57.537 40.909 0.00 0.00 39.24 1.82
4784 7245 4.675063 ATCTGACCCTGGTTGGTAAATT 57.325 40.909 0.00 0.00 39.24 1.82
4785 7246 4.675063 AATCTGACCCTGGTTGGTAAAT 57.325 40.909 0.00 0.00 39.24 1.40
4791 7252 2.472695 TCGAAATCTGACCCTGGTTG 57.527 50.000 0.00 0.00 0.00 3.77
4825 7286 4.915667 GGCTAAATTTCGTGTTTTGACCTC 59.084 41.667 0.00 0.00 0.00 3.85
4826 7287 4.555906 CGGCTAAATTTCGTGTTTTGACCT 60.556 41.667 0.00 0.00 0.00 3.85
4849 7310 3.031964 GCTGTCATGCACGAGTGGC 62.032 63.158 5.32 0.00 0.00 5.01
4850 7311 0.108662 TAGCTGTCATGCACGAGTGG 60.109 55.000 0.00 0.00 34.99 4.00
4851 7312 1.275505 CTAGCTGTCATGCACGAGTG 58.724 55.000 0.00 0.00 34.99 3.51
4852 7313 0.891373 ACTAGCTGTCATGCACGAGT 59.109 50.000 0.00 0.00 34.99 4.18
4853 7314 2.542618 CCTACTAGCTGTCATGCACGAG 60.543 54.545 0.00 0.00 34.99 4.18
4854 7315 1.405463 CCTACTAGCTGTCATGCACGA 59.595 52.381 0.00 0.00 34.99 4.35
4855 7316 1.845266 CCTACTAGCTGTCATGCACG 58.155 55.000 0.00 0.00 34.99 5.34
4856 7317 1.576356 GCCTACTAGCTGTCATGCAC 58.424 55.000 0.00 0.00 34.99 4.57
4857 7318 0.465705 GGCCTACTAGCTGTCATGCA 59.534 55.000 0.00 0.00 34.99 3.96
4858 7319 0.755686 AGGCCTACTAGCTGTCATGC 59.244 55.000 1.29 0.00 0.00 4.06
4957 7423 1.280886 GAGCTGTGAGTCACTGTGCG 61.281 60.000 25.42 10.86 36.06 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.