Multiple sequence alignment - TraesCS6B01G201700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G201700 chr6B 100.000 2882 0 0 1 2882 245986756 245983875 0.000000e+00 5323.0
1 TraesCS6B01G201700 chr6D 93.267 2495 123 24 417 2882 142139718 142137240 0.000000e+00 3635.0
2 TraesCS6B01G201700 chr6D 79.196 423 77 8 5 419 91497402 91496983 1.690000e-72 283.0
3 TraesCS6B01G201700 chr6A 92.023 2269 104 33 442 2662 187272899 187270660 0.000000e+00 3116.0
4 TraesCS6B01G201700 chr6A 98.113 53 1 0 2830 2882 187270014 187269962 3.060000e-15 93.5
5 TraesCS6B01G201700 chr7D 86.810 326 43 0 1012 1337 615765514 615765839 5.870000e-97 364.0
6 TraesCS6B01G201700 chr7D 85.981 321 43 2 1018 1337 615559438 615559119 2.750000e-90 342.0
7 TraesCS6B01G201700 chr7D 85.312 320 47 0 1018 1337 615774925 615775244 5.950000e-87 331.0
8 TraesCS6B01G201700 chr7A 85.417 336 45 4 1006 1339 708326517 708326850 2.130000e-91 346.0
9 TraesCS6B01G201700 chr7A 84.969 326 49 0 1012 1337 708319099 708319424 5.950000e-87 331.0
10 TraesCS6B01G201700 chr7B 85.670 321 46 0 1019 1339 708552469 708552789 3.560000e-89 339.0
11 TraesCS6B01G201700 chr7B 84.049 326 52 0 1012 1337 708446071 708446396 5.990000e-82 315.0
12 TraesCS6B01G201700 chr7B 76.066 422 76 11 1 419 240940822 240941221 2.270000e-46 196.0
13 TraesCS6B01G201700 chr4D 82.466 365 50 10 1 357 498691182 498691540 1.000000e-79 307.0
14 TraesCS6B01G201700 chr4D 77.966 413 77 8 16 419 152887139 152887546 2.220000e-61 246.0
15 TraesCS6B01G201700 chr3B 86.900 229 26 2 9 233 236494257 236494485 1.330000e-63 254.0
16 TraesCS6B01G201700 chr1A 81.481 324 47 7 1 317 541316406 541316089 1.330000e-63 254.0
17 TraesCS6B01G201700 chr5A 77.829 433 75 18 1 419 106753385 106752960 6.170000e-62 248.0
18 TraesCS6B01G201700 chr5A 76.526 426 73 11 2 419 31265558 31265964 1.050000e-49 207.0
19 TraesCS6B01G201700 chr2B 76.744 430 80 16 1 419 790774063 790774483 3.740000e-54 222.0
20 TraesCS6B01G201700 chr5B 77.121 389 68 14 27 402 605628477 605628097 3.760000e-49 206.0
21 TraesCS6B01G201700 chr5B 98.413 63 1 0 2029 2091 309666807 309666745 8.440000e-21 111.0
22 TraesCS6B01G201700 chr5D 79.545 264 46 6 159 419 311935931 311935673 6.340000e-42 182.0
23 TraesCS6B01G201700 chr3A 77.444 266 56 3 156 419 613177591 613177328 3.840000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G201700 chr6B 245983875 245986756 2881 True 5323.00 5323 100.000 1 2882 1 chr6B.!!$R1 2881
1 TraesCS6B01G201700 chr6D 142137240 142139718 2478 True 3635.00 3635 93.267 417 2882 1 chr6D.!!$R2 2465
2 TraesCS6B01G201700 chr6A 187269962 187272899 2937 True 1604.75 3116 95.068 442 2882 2 chr6A.!!$R1 2440

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
229 230 0.036388 ACCAATGTGCCACCGACTAG 60.036 55.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1937 1972 1.144969 CGGCGACTTCTTTGCACTTA 58.855 50.0 0.0 0.0 36.11 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.881352 CGAGGCGGCTTCTTCGTC 60.881 66.667 14.76 0.00 0.00 4.20
18 19 2.881352 GAGGCGGCTTCTTCGTCG 60.881 66.667 14.76 0.00 37.31 5.12
21 22 3.843240 GCGGCTTCTTCGTCGCTG 61.843 66.667 2.27 0.00 44.10 5.18
22 23 3.843240 CGGCTTCTTCGTCGCTGC 61.843 66.667 0.00 0.00 0.00 5.25
23 24 2.433318 GGCTTCTTCGTCGCTGCT 60.433 61.111 0.00 0.00 0.00 4.24
24 25 2.734673 GGCTTCTTCGTCGCTGCTG 61.735 63.158 0.00 0.00 0.00 4.41
25 26 2.024319 GCTTCTTCGTCGCTGCTGT 61.024 57.895 0.00 0.00 0.00 4.40
26 27 1.777819 CTTCTTCGTCGCTGCTGTG 59.222 57.895 0.00 0.00 0.00 3.66
27 28 0.941463 CTTCTTCGTCGCTGCTGTGT 60.941 55.000 3.96 0.00 0.00 3.72
28 29 0.939577 TTCTTCGTCGCTGCTGTGTC 60.940 55.000 3.96 0.00 0.00 3.67
29 30 2.710971 CTTCGTCGCTGCTGTGTCG 61.711 63.158 15.34 15.34 36.78 4.35
30 31 4.700365 TCGTCGCTGCTGTGTCGG 62.700 66.667 19.58 5.15 36.29 4.79
35 36 4.008933 GCTGCTGTGTCGGGGAGT 62.009 66.667 0.00 0.00 0.00 3.85
36 37 2.047844 CTGCTGTGTCGGGGAGTG 60.048 66.667 0.00 0.00 0.00 3.51
37 38 2.523168 TGCTGTGTCGGGGAGTGA 60.523 61.111 0.00 0.00 0.00 3.41
38 39 2.262915 GCTGTGTCGGGGAGTGAG 59.737 66.667 0.00 0.00 0.00 3.51
39 40 2.973899 CTGTGTCGGGGAGTGAGG 59.026 66.667 0.00 0.00 0.00 3.86
40 41 2.603473 TGTGTCGGGGAGTGAGGG 60.603 66.667 0.00 0.00 0.00 4.30
41 42 2.603776 GTGTCGGGGAGTGAGGGT 60.604 66.667 0.00 0.00 0.00 4.34
42 43 2.603473 TGTCGGGGAGTGAGGGTG 60.603 66.667 0.00 0.00 0.00 4.61
43 44 3.391382 GTCGGGGAGTGAGGGTGG 61.391 72.222 0.00 0.00 0.00 4.61
44 45 4.715130 TCGGGGAGTGAGGGTGGG 62.715 72.222 0.00 0.00 0.00 4.61
45 46 4.715130 CGGGGAGTGAGGGTGGGA 62.715 72.222 0.00 0.00 0.00 4.37
46 47 2.204090 GGGGAGTGAGGGTGGGAA 60.204 66.667 0.00 0.00 0.00 3.97
47 48 2.301738 GGGGAGTGAGGGTGGGAAG 61.302 68.421 0.00 0.00 0.00 3.46
48 49 2.671682 GGAGTGAGGGTGGGAAGC 59.328 66.667 0.00 0.00 0.00 3.86
49 50 1.920835 GGAGTGAGGGTGGGAAGCT 60.921 63.158 0.00 0.00 0.00 3.74
50 51 1.492993 GGAGTGAGGGTGGGAAGCTT 61.493 60.000 0.00 0.00 0.00 3.74
51 52 0.402121 GAGTGAGGGTGGGAAGCTTT 59.598 55.000 0.00 0.00 0.00 3.51
52 53 0.402121 AGTGAGGGTGGGAAGCTTTC 59.598 55.000 0.00 0.00 0.00 2.62
53 54 0.955919 GTGAGGGTGGGAAGCTTTCG 60.956 60.000 0.00 0.00 0.00 3.46
54 55 1.377333 GAGGGTGGGAAGCTTTCGG 60.377 63.158 0.00 0.00 0.00 4.30
55 56 1.838073 GAGGGTGGGAAGCTTTCGGA 61.838 60.000 0.00 0.00 0.00 4.55
56 57 1.208165 AGGGTGGGAAGCTTTCGGAT 61.208 55.000 0.00 0.00 0.00 4.18
57 58 0.748367 GGGTGGGAAGCTTTCGGATC 60.748 60.000 0.00 0.00 0.00 3.36
58 59 0.748367 GGTGGGAAGCTTTCGGATCC 60.748 60.000 0.00 0.00 0.00 3.36
59 60 4.561452 GGGAAGCTTTCGGATCCC 57.439 61.111 6.06 0.86 44.43 3.85
60 61 1.152943 GGGAAGCTTTCGGATCCCC 60.153 63.158 6.06 4.62 44.84 4.81
70 71 3.467226 GGATCCCCGACGGCAAGA 61.467 66.667 8.86 5.10 0.00 3.02
71 72 2.202892 GATCCCCGACGGCAAGAC 60.203 66.667 8.86 0.00 0.00 3.01
72 73 4.143333 ATCCCCGACGGCAAGACG 62.143 66.667 8.86 0.00 40.31 4.18
107 108 4.382320 GGAGGTGGCGGCGTTGTA 62.382 66.667 9.37 0.00 0.00 2.41
108 109 2.813908 GAGGTGGCGGCGTTGTAG 60.814 66.667 9.37 0.00 0.00 2.74
109 110 4.388499 AGGTGGCGGCGTTGTAGG 62.388 66.667 9.37 0.00 0.00 3.18
126 127 2.124445 GGGGGATGTTGCGGTACC 60.124 66.667 0.16 0.16 0.00 3.34
127 128 2.512974 GGGGATGTTGCGGTACCG 60.513 66.667 30.06 30.06 43.09 4.02
128 129 2.512974 GGGATGTTGCGGTACCGG 60.513 66.667 33.98 16.91 40.19 5.28
129 130 3.199891 GGATGTTGCGGTACCGGC 61.200 66.667 33.98 25.32 40.19 6.13
130 131 2.435234 GATGTTGCGGTACCGGCA 60.435 61.111 33.98 27.43 40.19 5.69
131 132 2.032834 ATGTTGCGGTACCGGCAA 59.967 55.556 33.98 30.75 40.19 4.52
132 133 2.248274 GATGTTGCGGTACCGGCAAC 62.248 60.000 38.70 38.70 46.14 4.17
133 134 3.729698 GTTGCGGTACCGGCAACC 61.730 66.667 37.31 27.56 43.43 3.77
148 149 4.119442 GGCAACCGATAGAGTAACAAGA 57.881 45.455 0.00 0.00 39.76 3.02
149 150 4.501071 GGCAACCGATAGAGTAACAAGAA 58.499 43.478 0.00 0.00 39.76 2.52
150 151 4.933400 GGCAACCGATAGAGTAACAAGAAA 59.067 41.667 0.00 0.00 39.76 2.52
151 152 5.410439 GGCAACCGATAGAGTAACAAGAAAA 59.590 40.000 0.00 0.00 39.76 2.29
152 153 6.402226 GGCAACCGATAGAGTAACAAGAAAAG 60.402 42.308 0.00 0.00 39.76 2.27
153 154 6.147328 GCAACCGATAGAGTAACAAGAAAAGT 59.853 38.462 0.00 0.00 39.76 2.66
154 155 7.510630 CAACCGATAGAGTAACAAGAAAAGTG 58.489 38.462 0.00 0.00 39.76 3.16
155 156 6.164176 ACCGATAGAGTAACAAGAAAAGTGG 58.836 40.000 0.00 0.00 39.76 4.00
156 157 5.581085 CCGATAGAGTAACAAGAAAAGTGGG 59.419 44.000 0.00 0.00 39.76 4.61
157 158 5.063564 CGATAGAGTAACAAGAAAAGTGGGC 59.936 44.000 0.00 0.00 39.76 5.36
158 159 3.139077 AGAGTAACAAGAAAAGTGGGCG 58.861 45.455 0.00 0.00 0.00 6.13
159 160 2.876550 GAGTAACAAGAAAAGTGGGCGT 59.123 45.455 0.00 0.00 0.00 5.68
160 161 2.876550 AGTAACAAGAAAAGTGGGCGTC 59.123 45.455 0.00 0.00 0.00 5.19
161 162 0.661020 AACAAGAAAAGTGGGCGTCG 59.339 50.000 0.00 0.00 0.00 5.12
162 163 1.164041 ACAAGAAAAGTGGGCGTCGG 61.164 55.000 0.00 0.00 0.00 4.79
163 164 2.258726 AAGAAAAGTGGGCGTCGGC 61.259 57.895 10.88 10.88 38.90 5.54
164 165 2.951475 AAGAAAAGTGGGCGTCGGCA 62.951 55.000 21.23 3.99 42.47 5.69
165 166 2.517402 AAAAGTGGGCGTCGGCAA 60.517 55.556 21.23 6.42 42.47 4.52
166 167 2.726850 GAAAAGTGGGCGTCGGCAAC 62.727 60.000 18.17 18.17 42.47 4.17
193 194 2.597510 GGGCGAGGGTTTGCTGTT 60.598 61.111 0.00 0.00 33.93 3.16
194 195 2.644992 GGCGAGGGTTTGCTGTTG 59.355 61.111 0.00 0.00 33.93 3.33
195 196 2.644992 GCGAGGGTTTGCTGTTGG 59.355 61.111 0.00 0.00 0.00 3.77
196 197 1.896660 GCGAGGGTTTGCTGTTGGA 60.897 57.895 0.00 0.00 0.00 3.53
197 198 1.452145 GCGAGGGTTTGCTGTTGGAA 61.452 55.000 0.00 0.00 0.00 3.53
198 199 1.247567 CGAGGGTTTGCTGTTGGAAT 58.752 50.000 0.00 0.00 0.00 3.01
199 200 2.432444 CGAGGGTTTGCTGTTGGAATA 58.568 47.619 0.00 0.00 0.00 1.75
200 201 2.420022 CGAGGGTTTGCTGTTGGAATAG 59.580 50.000 0.00 0.00 0.00 1.73
201 202 2.755103 GAGGGTTTGCTGTTGGAATAGG 59.245 50.000 0.00 0.00 0.00 2.57
202 203 2.378547 AGGGTTTGCTGTTGGAATAGGA 59.621 45.455 0.00 0.00 0.00 2.94
203 204 2.755103 GGGTTTGCTGTTGGAATAGGAG 59.245 50.000 0.00 0.00 0.00 3.69
204 205 3.561313 GGGTTTGCTGTTGGAATAGGAGA 60.561 47.826 0.00 0.00 0.00 3.71
205 206 3.691609 GGTTTGCTGTTGGAATAGGAGAG 59.308 47.826 0.00 0.00 0.00 3.20
206 207 3.634397 TTGCTGTTGGAATAGGAGAGG 57.366 47.619 0.00 0.00 0.00 3.69
207 208 2.832838 TGCTGTTGGAATAGGAGAGGA 58.167 47.619 0.00 0.00 0.00 3.71
208 209 3.387962 TGCTGTTGGAATAGGAGAGGAT 58.612 45.455 0.00 0.00 0.00 3.24
209 210 3.135348 TGCTGTTGGAATAGGAGAGGATG 59.865 47.826 0.00 0.00 0.00 3.51
210 211 3.389329 GCTGTTGGAATAGGAGAGGATGA 59.611 47.826 0.00 0.00 0.00 2.92
211 212 4.742138 GCTGTTGGAATAGGAGAGGATGAC 60.742 50.000 0.00 0.00 0.00 3.06
212 213 3.711704 TGTTGGAATAGGAGAGGATGACC 59.288 47.826 0.00 0.00 0.00 4.02
213 214 3.706389 TGGAATAGGAGAGGATGACCA 57.294 47.619 0.00 0.00 38.94 4.02
214 215 4.007581 TGGAATAGGAGAGGATGACCAA 57.992 45.455 0.00 0.00 38.94 3.67
215 216 4.570926 TGGAATAGGAGAGGATGACCAAT 58.429 43.478 0.00 0.00 38.94 3.16
216 217 4.349048 TGGAATAGGAGAGGATGACCAATG 59.651 45.833 0.00 0.00 38.94 2.82
217 218 4.349342 GGAATAGGAGAGGATGACCAATGT 59.651 45.833 0.00 0.00 38.94 2.71
218 219 4.970860 ATAGGAGAGGATGACCAATGTG 57.029 45.455 0.00 0.00 38.94 3.21
219 220 1.211457 AGGAGAGGATGACCAATGTGC 59.789 52.381 0.00 0.00 38.94 4.57
220 221 1.673168 GAGAGGATGACCAATGTGCC 58.327 55.000 0.00 0.00 38.94 5.01
221 222 0.994247 AGAGGATGACCAATGTGCCA 59.006 50.000 0.00 0.00 38.94 4.92
222 223 1.098050 GAGGATGACCAATGTGCCAC 58.902 55.000 0.00 0.00 38.94 5.01
223 224 0.323725 AGGATGACCAATGTGCCACC 60.324 55.000 0.00 0.00 38.94 4.61
224 225 1.656818 GGATGACCAATGTGCCACCG 61.657 60.000 0.00 0.00 35.97 4.94
225 226 0.676466 GATGACCAATGTGCCACCGA 60.676 55.000 0.00 0.00 0.00 4.69
226 227 0.960364 ATGACCAATGTGCCACCGAC 60.960 55.000 0.00 0.00 0.00 4.79
227 228 1.302511 GACCAATGTGCCACCGACT 60.303 57.895 0.00 0.00 0.00 4.18
228 229 0.036765 GACCAATGTGCCACCGACTA 60.037 55.000 0.00 0.00 0.00 2.59
229 230 0.036388 ACCAATGTGCCACCGACTAG 60.036 55.000 0.00 0.00 0.00 2.57
230 231 1.369091 CCAATGTGCCACCGACTAGC 61.369 60.000 0.00 0.00 0.00 3.42
231 232 1.447838 AATGTGCCACCGACTAGCG 60.448 57.895 0.00 0.00 40.47 4.26
241 242 3.330766 CGACTAGCGGTTCAGGAAG 57.669 57.895 0.00 0.00 36.03 3.46
242 243 0.809385 CGACTAGCGGTTCAGGAAGA 59.191 55.000 0.00 0.00 36.03 2.87
243 244 1.202200 CGACTAGCGGTTCAGGAAGAG 60.202 57.143 0.00 0.00 36.03 2.85
244 245 1.135333 GACTAGCGGTTCAGGAAGAGG 59.865 57.143 0.00 0.00 0.00 3.69
245 246 1.272536 ACTAGCGGTTCAGGAAGAGGA 60.273 52.381 0.00 0.00 0.00 3.71
246 247 1.407258 CTAGCGGTTCAGGAAGAGGAG 59.593 57.143 0.00 0.00 0.00 3.69
247 248 0.543174 AGCGGTTCAGGAAGAGGAGT 60.543 55.000 0.00 0.00 0.00 3.85
248 249 1.183549 GCGGTTCAGGAAGAGGAGTA 58.816 55.000 0.00 0.00 0.00 2.59
249 250 1.135333 GCGGTTCAGGAAGAGGAGTAG 59.865 57.143 0.00 0.00 0.00 2.57
250 251 2.724454 CGGTTCAGGAAGAGGAGTAGA 58.276 52.381 0.00 0.00 0.00 2.59
251 252 2.424246 CGGTTCAGGAAGAGGAGTAGAC 59.576 54.545 0.00 0.00 0.00 2.59
252 253 3.432378 GGTTCAGGAAGAGGAGTAGACA 58.568 50.000 0.00 0.00 0.00 3.41
253 254 3.445805 GGTTCAGGAAGAGGAGTAGACAG 59.554 52.174 0.00 0.00 0.00 3.51
254 255 4.337145 GTTCAGGAAGAGGAGTAGACAGA 58.663 47.826 0.00 0.00 0.00 3.41
255 256 3.958018 TCAGGAAGAGGAGTAGACAGAC 58.042 50.000 0.00 0.00 0.00 3.51
256 257 2.680841 CAGGAAGAGGAGTAGACAGACG 59.319 54.545 0.00 0.00 0.00 4.18
257 258 1.402613 GGAAGAGGAGTAGACAGACGC 59.597 57.143 0.00 0.00 0.00 5.19
258 259 1.062880 GAAGAGGAGTAGACAGACGCG 59.937 57.143 3.53 3.53 0.00 6.01
259 260 0.745128 AGAGGAGTAGACAGACGCGG 60.745 60.000 12.47 0.00 0.00 6.46
260 261 2.102553 GGAGTAGACAGACGCGGC 59.897 66.667 12.47 7.86 0.00 6.53
261 262 2.697761 GGAGTAGACAGACGCGGCA 61.698 63.158 17.71 0.00 0.00 5.69
262 263 1.514443 GAGTAGACAGACGCGGCAC 60.514 63.158 17.71 1.96 0.00 5.01
275 276 4.080640 GGCACGCGTTTGTTTTGT 57.919 50.000 10.22 0.00 0.00 2.83
276 277 1.628463 GGCACGCGTTTGTTTTGTG 59.372 52.632 10.22 0.00 0.00 3.33
277 278 1.073768 GGCACGCGTTTGTTTTGTGT 61.074 50.000 10.22 0.00 33.23 3.72
278 279 0.711118 GCACGCGTTTGTTTTGTGTT 59.289 45.000 10.22 0.00 33.23 3.32
279 280 1.266163 GCACGCGTTTGTTTTGTGTTC 60.266 47.619 10.22 0.00 33.23 3.18
280 281 1.008946 CACGCGTTTGTTTTGTGTTCG 60.009 47.619 10.22 0.00 0.00 3.95
281 282 0.045419 CGCGTTTGTTTTGTGTTCGC 60.045 50.000 0.00 0.00 39.03 4.70
282 283 0.045419 GCGTTTGTTTTGTGTTCGCG 60.045 50.000 0.00 0.00 33.59 5.87
283 284 0.045419 CGTTTGTTTTGTGTTCGCGC 60.045 50.000 0.00 0.00 0.00 6.86
284 285 0.296349 GTTTGTTTTGTGTTCGCGCC 59.704 50.000 0.00 0.00 0.00 6.53
285 286 1.134530 TTTGTTTTGTGTTCGCGCCG 61.135 50.000 0.00 0.00 0.00 6.46
286 287 1.978712 TTGTTTTGTGTTCGCGCCGA 61.979 50.000 0.00 0.00 0.00 5.54
287 288 2.001880 GTTTTGTGTTCGCGCCGAC 61.002 57.895 0.00 0.48 34.89 4.79
288 289 3.494454 TTTTGTGTTCGCGCCGACG 62.494 57.895 0.00 0.00 44.07 5.12
298 299 4.946766 CGCCGACGCAAATTAGAC 57.053 55.556 0.00 0.00 34.03 2.59
299 300 2.369870 CGCCGACGCAAATTAGACT 58.630 52.632 0.00 0.00 34.03 3.24
300 301 0.719465 CGCCGACGCAAATTAGACTT 59.281 50.000 0.00 0.00 34.03 3.01
301 302 1.266891 CGCCGACGCAAATTAGACTTC 60.267 52.381 0.00 0.00 34.03 3.01
302 303 1.730064 GCCGACGCAAATTAGACTTCA 59.270 47.619 0.00 0.00 34.03 3.02
303 304 2.158841 GCCGACGCAAATTAGACTTCAA 59.841 45.455 0.00 0.00 34.03 2.69
304 305 3.364565 GCCGACGCAAATTAGACTTCAAA 60.365 43.478 0.00 0.00 34.03 2.69
305 306 4.778904 CCGACGCAAATTAGACTTCAAAA 58.221 39.130 0.00 0.00 0.00 2.44
306 307 5.390613 CCGACGCAAATTAGACTTCAAAAT 58.609 37.500 0.00 0.00 0.00 1.82
307 308 5.283717 CCGACGCAAATTAGACTTCAAAATG 59.716 40.000 0.00 0.00 0.00 2.32
308 309 6.077197 CGACGCAAATTAGACTTCAAAATGA 58.923 36.000 0.00 0.00 0.00 2.57
309 310 6.577055 CGACGCAAATTAGACTTCAAAATGAA 59.423 34.615 0.00 0.00 34.79 2.57
310 311 7.408290 CGACGCAAATTAGACTTCAAAATGAAC 60.408 37.037 0.00 0.00 32.21 3.18
311 312 6.640907 ACGCAAATTAGACTTCAAAATGAACC 59.359 34.615 0.00 0.00 32.21 3.62
312 313 6.183359 CGCAAATTAGACTTCAAAATGAACCG 60.183 38.462 0.00 0.00 32.21 4.44
313 314 6.861055 GCAAATTAGACTTCAAAATGAACCGA 59.139 34.615 0.00 0.00 32.21 4.69
314 315 7.381139 GCAAATTAGACTTCAAAATGAACCGAA 59.619 33.333 0.00 0.00 32.21 4.30
315 316 9.243637 CAAATTAGACTTCAAAATGAACCGAAA 57.756 29.630 0.00 0.00 32.21 3.46
316 317 9.810545 AAATTAGACTTCAAAATGAACCGAAAA 57.189 25.926 0.00 0.00 32.21 2.29
317 318 9.810545 AATTAGACTTCAAAATGAACCGAAAAA 57.189 25.926 0.00 0.00 32.21 1.94
318 319 8.850454 TTAGACTTCAAAATGAACCGAAAAAG 57.150 30.769 0.00 0.00 32.21 2.27
319 320 7.095695 AGACTTCAAAATGAACCGAAAAAGA 57.904 32.000 0.00 0.00 32.21 2.52
320 321 7.543756 AGACTTCAAAATGAACCGAAAAAGAA 58.456 30.769 0.00 0.00 32.21 2.52
321 322 8.197439 AGACTTCAAAATGAACCGAAAAAGAAT 58.803 29.630 0.00 0.00 32.21 2.40
322 323 8.352752 ACTTCAAAATGAACCGAAAAAGAATC 57.647 30.769 0.00 0.00 32.21 2.52
323 324 6.984740 TCAAAATGAACCGAAAAAGAATCG 57.015 33.333 0.00 0.00 39.92 3.34
330 331 2.247311 CGAAAAAGAATCGGCAGGTG 57.753 50.000 0.00 0.00 36.68 4.00
331 332 1.135689 CGAAAAAGAATCGGCAGGTGG 60.136 52.381 0.00 0.00 36.68 4.61
332 333 2.159382 GAAAAAGAATCGGCAGGTGGA 58.841 47.619 0.00 0.00 0.00 4.02
333 334 2.514458 AAAAGAATCGGCAGGTGGAT 57.486 45.000 0.00 0.00 0.00 3.41
334 335 1.755179 AAAGAATCGGCAGGTGGATG 58.245 50.000 0.00 0.00 0.00 3.51
335 336 0.911769 AAGAATCGGCAGGTGGATGA 59.088 50.000 0.00 0.00 0.00 2.92
336 337 0.911769 AGAATCGGCAGGTGGATGAA 59.088 50.000 0.00 0.00 0.00 2.57
337 338 1.281867 AGAATCGGCAGGTGGATGAAA 59.718 47.619 0.00 0.00 0.00 2.69
338 339 2.091541 GAATCGGCAGGTGGATGAAAA 58.908 47.619 0.00 0.00 0.00 2.29
339 340 2.214376 ATCGGCAGGTGGATGAAAAA 57.786 45.000 0.00 0.00 0.00 1.94
340 341 1.243902 TCGGCAGGTGGATGAAAAAC 58.756 50.000 0.00 0.00 0.00 2.43
341 342 0.109781 CGGCAGGTGGATGAAAAACG 60.110 55.000 0.00 0.00 0.00 3.60
342 343 0.243636 GGCAGGTGGATGAAAAACGG 59.756 55.000 0.00 0.00 0.00 4.44
343 344 1.243902 GCAGGTGGATGAAAAACGGA 58.756 50.000 0.00 0.00 0.00 4.69
344 345 1.068541 GCAGGTGGATGAAAAACGGAC 60.069 52.381 0.00 0.00 0.00 4.79
345 346 1.196808 CAGGTGGATGAAAAACGGACG 59.803 52.381 0.00 0.00 0.00 4.79
346 347 1.202722 AGGTGGATGAAAAACGGACGT 60.203 47.619 0.00 0.00 0.00 4.34
347 348 1.069500 GGTGGATGAAAAACGGACGTG 60.069 52.381 0.00 0.00 0.00 4.49
348 349 1.600485 GTGGATGAAAAACGGACGTGT 59.400 47.619 0.00 0.00 0.00 4.49
349 350 1.600013 TGGATGAAAAACGGACGTGTG 59.400 47.619 0.00 0.00 0.00 3.82
350 351 1.600485 GGATGAAAAACGGACGTGTGT 59.400 47.619 0.00 0.00 0.00 3.72
351 352 2.349155 GGATGAAAAACGGACGTGTGTC 60.349 50.000 0.00 0.00 44.72 3.67
362 363 3.080969 GACGTGTGTCCGTTTAAATCG 57.919 47.619 0.00 0.00 41.98 3.34
363 364 2.725723 GACGTGTGTCCGTTTAAATCGA 59.274 45.455 0.00 0.00 41.98 3.59
364 365 2.472488 ACGTGTGTCCGTTTAAATCGAC 59.528 45.455 10.45 9.98 37.96 4.20
365 366 2.469501 CGTGTGTCCGTTTAAATCGACG 60.470 50.000 10.45 8.44 38.90 5.12
366 367 1.456544 TGTGTCCGTTTAAATCGACGC 59.543 47.619 17.62 17.62 37.91 5.19
367 368 1.456544 GTGTCCGTTTAAATCGACGCA 59.543 47.619 18.74 9.69 37.91 5.24
368 369 2.093152 GTGTCCGTTTAAATCGACGCAT 59.907 45.455 18.74 0.00 37.91 4.73
369 370 2.737783 TGTCCGTTTAAATCGACGCATT 59.262 40.909 10.45 0.00 37.91 3.56
370 371 3.088552 GTCCGTTTAAATCGACGCATTG 58.911 45.455 10.45 0.00 37.91 2.82
371 372 2.737783 TCCGTTTAAATCGACGCATTGT 59.262 40.909 10.45 0.00 37.91 2.71
372 373 2.837878 CCGTTTAAATCGACGCATTGTG 59.162 45.455 10.45 0.00 37.91 3.33
373 374 2.837878 CGTTTAAATCGACGCATTGTGG 59.162 45.455 1.77 0.00 32.11 4.17
374 375 2.535934 TTAAATCGACGCATTGTGGC 57.464 45.000 1.77 0.00 0.00 5.01
386 387 4.760227 GCATTGTGGCGATTTTTATGTC 57.240 40.909 0.00 0.00 0.00 3.06
387 388 4.423732 GCATTGTGGCGATTTTTATGTCT 58.576 39.130 0.00 0.00 0.00 3.41
388 389 5.577835 GCATTGTGGCGATTTTTATGTCTA 58.422 37.500 0.00 0.00 0.00 2.59
389 390 5.455525 GCATTGTGGCGATTTTTATGTCTAC 59.544 40.000 0.00 0.00 0.00 2.59
390 391 4.850859 TGTGGCGATTTTTATGTCTACG 57.149 40.909 0.00 0.00 0.00 3.51
391 392 4.247258 TGTGGCGATTTTTATGTCTACGT 58.753 39.130 0.00 0.00 0.00 3.57
392 393 4.327898 TGTGGCGATTTTTATGTCTACGTC 59.672 41.667 0.00 0.00 0.00 4.34
393 394 3.548668 TGGCGATTTTTATGTCTACGTCG 59.451 43.478 0.00 0.00 0.00 5.12
394 395 3.792956 GGCGATTTTTATGTCTACGTCGA 59.207 43.478 0.00 0.00 0.00 4.20
395 396 4.316930 GGCGATTTTTATGTCTACGTCGAC 60.317 45.833 12.96 12.96 34.52 4.20
396 397 4.316930 GCGATTTTTATGTCTACGTCGACC 60.317 45.833 16.65 0.00 32.97 4.79
397 398 5.032863 CGATTTTTATGTCTACGTCGACCT 58.967 41.667 16.65 10.07 32.97 3.85
398 399 6.194463 CGATTTTTATGTCTACGTCGACCTA 58.806 40.000 16.65 9.11 32.97 3.08
399 400 6.688385 CGATTTTTATGTCTACGTCGACCTAA 59.312 38.462 16.65 14.09 32.97 2.69
400 401 7.218773 CGATTTTTATGTCTACGTCGACCTAAA 59.781 37.037 19.56 19.56 34.45 1.85
401 402 7.566858 TTTTTATGTCTACGTCGACCTAAAC 57.433 36.000 21.75 0.32 35.33 2.01
402 403 2.880822 TGTCTACGTCGACCTAAACG 57.119 50.000 16.65 0.00 44.22 3.60
403 404 2.412870 TGTCTACGTCGACCTAAACGA 58.587 47.619 16.65 0.00 41.29 3.85
404 405 2.805671 TGTCTACGTCGACCTAAACGAA 59.194 45.455 16.65 0.00 41.29 3.85
405 406 3.156753 GTCTACGTCGACCTAAACGAAC 58.843 50.000 10.58 0.00 41.29 3.95
406 407 2.159841 TCTACGTCGACCTAAACGAACG 60.160 50.000 10.58 0.00 41.29 3.95
407 408 0.998727 ACGTCGACCTAAACGAACGC 60.999 55.000 10.58 0.00 41.29 4.84
408 409 1.692729 GTCGACCTAAACGAACGCG 59.307 57.895 3.53 3.53 41.31 6.01
409 410 2.082366 TCGACCTAAACGAACGCGC 61.082 57.895 5.73 0.00 42.48 6.86
410 411 2.389143 GACCTAAACGAACGCGCG 59.611 61.111 30.96 30.96 42.48 6.86
412 413 2.093246 CCTAAACGAACGCGCGTG 59.907 61.111 38.44 27.05 44.86 5.34
413 414 2.093246 CTAAACGAACGCGCGTGG 59.907 61.111 38.44 31.42 44.86 4.94
414 415 2.354422 TAAACGAACGCGCGTGGA 60.354 55.556 38.44 15.11 44.86 4.02
415 416 2.524340 CTAAACGAACGCGCGTGGAC 62.524 60.000 38.44 27.19 44.86 4.02
425 426 2.845739 CGCGTGGACGAAGCATACG 61.846 63.158 2.73 0.00 43.02 3.06
440 441 2.550978 CATACGATCTGGGACACAACC 58.449 52.381 0.00 0.00 0.00 3.77
460 461 3.834799 CCGGTGAGGGCTCGTACC 61.835 72.222 0.00 2.49 35.97 3.34
496 497 1.126079 GGCGTGGTCGTATATGAACG 58.874 55.000 12.73 12.73 44.19 3.95
499 500 0.501435 GTGGTCGTATATGAACGCGC 59.499 55.000 5.73 0.00 42.56 6.86
535 536 0.179056 CGGATATGTGAGCCCCGTTT 60.179 55.000 0.00 0.00 35.83 3.60
536 537 1.745827 CGGATATGTGAGCCCCGTTTT 60.746 52.381 0.00 0.00 35.83 2.43
577 578 1.269361 CGCCAGTTTTTAACGGCCTTT 60.269 47.619 0.00 0.00 43.38 3.11
594 595 1.624813 CTTTGTGGCATGGGGTTTGAT 59.375 47.619 0.00 0.00 0.00 2.57
609 610 2.752903 GTTTGATGGTACGGAAGCCAAT 59.247 45.455 0.00 0.00 38.38 3.16
678 679 3.243602 GGATTAACAACCAAACAACGGCT 60.244 43.478 0.00 0.00 0.00 5.52
857 870 4.984576 TATAAGCCCCCGCCTCCTCTTT 62.985 54.545 0.00 0.00 34.57 2.52
906 919 6.360947 CAGACGTCCTAATCACTAATCAATCG 59.639 42.308 13.01 0.00 0.00 3.34
960 978 3.322466 CGTGAGGCCAAGGGGAGT 61.322 66.667 5.01 0.00 35.59 3.85
976 999 2.553247 GGGAGTGGAGGAGAAGGTTTTG 60.553 54.545 0.00 0.00 0.00 2.44
980 1003 1.423921 TGGAGGAGAAGGTTTTGGGTC 59.576 52.381 0.00 0.00 0.00 4.46
1434 1464 2.037527 GGTCCCGAGAGTCCCACT 59.962 66.667 0.00 0.00 0.00 4.00
1440 1470 1.395826 CCGAGAGTCCCACTGGATCC 61.396 65.000 4.20 4.20 44.28 3.36
1584 1614 0.812014 CCTCTCTGTCGCTCTCGCTA 60.812 60.000 0.00 0.00 35.26 4.26
1614 1644 2.345991 CACGGGTTCCACCACGAT 59.654 61.111 9.80 0.00 41.02 3.73
1891 1922 2.815211 CGTCATGACCCGCCAGTG 60.815 66.667 20.03 0.00 0.00 3.66
1918 1953 3.883631 AAACGCCAGTAGTAAAAACCG 57.116 42.857 0.00 0.00 0.00 4.44
1925 1960 1.344114 AGTAGTAAAAACCGTCGGCCA 59.656 47.619 12.28 0.00 0.00 5.36
2014 2049 2.179517 GCGCTGAGCTGTAGTCGT 59.820 61.111 1.78 0.00 44.04 4.34
2092 2131 1.748403 TCTGAAACAGAGCAGCGGT 59.252 52.632 0.00 0.00 35.39 5.68
2122 2162 3.072330 GCAAGGGGGAAATGGAAAGAAAA 59.928 43.478 0.00 0.00 0.00 2.29
2149 2191 8.687824 AGAACGGAAATTGTTAATTATTGCTG 57.312 30.769 0.00 0.00 0.00 4.41
2151 2193 6.630071 ACGGAAATTGTTAATTATTGCTGCT 58.370 32.000 0.00 0.00 0.00 4.24
2194 2236 2.141517 CGGCACAGGAATGAGATGATC 58.858 52.381 0.00 0.00 0.00 2.92
2209 2251 3.809374 GATCGGGACCGGTGATGGC 62.809 68.421 14.63 0.00 40.25 4.40
2262 2304 0.248743 TCGATCTACGCGCCGAAATT 60.249 50.000 5.73 0.00 42.26 1.82
2268 2310 1.061421 CTACGCGCCGAAATTTAGCAA 59.939 47.619 5.73 0.00 0.00 3.91
2272 2314 2.324860 GCGCCGAAATTTAGCAAGTTT 58.675 42.857 11.90 0.00 0.00 2.66
2274 2316 3.821841 CGCCGAAATTTAGCAAGTTTCT 58.178 40.909 11.90 0.00 31.42 2.52
2284 2326 8.593492 AATTTAGCAAGTTTCTTTGATGGTTC 57.407 30.769 0.00 0.00 0.00 3.62
2285 2327 4.590850 AGCAAGTTTCTTTGATGGTTCC 57.409 40.909 0.00 0.00 0.00 3.62
2286 2328 3.004734 AGCAAGTTTCTTTGATGGTTCCG 59.995 43.478 0.00 0.00 0.00 4.30
2287 2329 3.308530 CAAGTTTCTTTGATGGTTCCGC 58.691 45.455 0.00 0.00 0.00 5.54
2290 2332 1.974265 TTCTTTGATGGTTCCGCACA 58.026 45.000 0.00 0.00 0.00 4.57
2324 2367 2.117156 GCCGGCATGCTCAGACATT 61.117 57.895 24.80 0.00 0.00 2.71
2399 2450 3.750130 CGTGTGTACTACTACCTCTGTGT 59.250 47.826 0.00 0.00 0.00 3.72
2400 2451 4.378149 CGTGTGTACTACTACCTCTGTGTG 60.378 50.000 0.00 0.00 0.00 3.82
2470 2521 2.225068 ATCTAACCATGACGAAGGCG 57.775 50.000 0.00 0.00 44.79 5.52
2549 2600 0.036765 GCATCGTTGGGGACAGTACA 60.037 55.000 0.00 0.00 44.54 2.90
2625 2676 0.390472 GGACAGCAGGACTAGTGTGC 60.390 60.000 16.01 16.01 37.48 4.57
2711 2762 1.348064 TGGCGGTATTGATAGAGGGG 58.652 55.000 0.00 0.00 0.00 4.79
2718 2769 0.271927 ATTGATAGAGGGGGCAGGGA 59.728 55.000 0.00 0.00 0.00 4.20
2725 2867 3.314059 AGAGGGGGCAGGGATAAATAT 57.686 47.619 0.00 0.00 0.00 1.28
2805 2947 2.124819 CTGCGCAATCTGCTCCCT 60.125 61.111 13.05 0.00 42.25 4.20
2809 2951 1.308069 GCGCAATCTGCTCCCTCAAA 61.308 55.000 0.30 0.00 42.25 2.69
2851 3387 2.897846 TGCCCACGGAACAACACG 60.898 61.111 0.00 0.00 0.00 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.881352 GACGAAGAAGCCGCCTCG 60.881 66.667 0.00 0.00 0.00 4.63
1 2 2.881352 CGACGAAGAAGCCGCCTC 60.881 66.667 0.00 0.00 0.00 4.70
4 5 3.843240 CAGCGACGAAGAAGCCGC 61.843 66.667 0.00 0.00 47.00 6.53
5 6 3.843240 GCAGCGACGAAGAAGCCG 61.843 66.667 0.00 0.00 34.59 5.52
6 7 2.433318 AGCAGCGACGAAGAAGCC 60.433 61.111 0.00 0.00 34.59 4.35
7 8 2.024319 ACAGCAGCGACGAAGAAGC 61.024 57.895 0.00 0.00 0.00 3.86
8 9 0.941463 ACACAGCAGCGACGAAGAAG 60.941 55.000 0.00 0.00 0.00 2.85
9 10 0.939577 GACACAGCAGCGACGAAGAA 60.940 55.000 0.00 0.00 0.00 2.52
10 11 1.371758 GACACAGCAGCGACGAAGA 60.372 57.895 0.00 0.00 0.00 2.87
11 12 2.710971 CGACACAGCAGCGACGAAG 61.711 63.158 0.00 0.00 0.00 3.79
12 13 2.729491 CGACACAGCAGCGACGAA 60.729 61.111 0.00 0.00 0.00 3.85
13 14 4.700365 CCGACACAGCAGCGACGA 62.700 66.667 0.00 0.00 0.00 4.20
18 19 4.008933 ACTCCCCGACACAGCAGC 62.009 66.667 0.00 0.00 0.00 5.25
19 20 2.047844 CACTCCCCGACACAGCAG 60.048 66.667 0.00 0.00 0.00 4.24
20 21 2.523168 TCACTCCCCGACACAGCA 60.523 61.111 0.00 0.00 0.00 4.41
21 22 2.262915 CTCACTCCCCGACACAGC 59.737 66.667 0.00 0.00 0.00 4.40
22 23 2.650116 CCCTCACTCCCCGACACAG 61.650 68.421 0.00 0.00 0.00 3.66
23 24 2.603473 CCCTCACTCCCCGACACA 60.603 66.667 0.00 0.00 0.00 3.72
24 25 2.603776 ACCCTCACTCCCCGACAC 60.604 66.667 0.00 0.00 0.00 3.67
25 26 2.603473 CACCCTCACTCCCCGACA 60.603 66.667 0.00 0.00 0.00 4.35
26 27 3.391382 CCACCCTCACTCCCCGAC 61.391 72.222 0.00 0.00 0.00 4.79
27 28 4.715130 CCCACCCTCACTCCCCGA 62.715 72.222 0.00 0.00 0.00 5.14
28 29 4.715130 TCCCACCCTCACTCCCCG 62.715 72.222 0.00 0.00 0.00 5.73
29 30 2.204090 TTCCCACCCTCACTCCCC 60.204 66.667 0.00 0.00 0.00 4.81
30 31 2.972819 GCTTCCCACCCTCACTCCC 61.973 68.421 0.00 0.00 0.00 4.30
31 32 1.492993 AAGCTTCCCACCCTCACTCC 61.493 60.000 0.00 0.00 0.00 3.85
32 33 0.402121 AAAGCTTCCCACCCTCACTC 59.598 55.000 0.00 0.00 0.00 3.51
33 34 0.402121 GAAAGCTTCCCACCCTCACT 59.598 55.000 0.00 0.00 0.00 3.41
34 35 0.955919 CGAAAGCTTCCCACCCTCAC 60.956 60.000 0.00 0.00 0.00 3.51
35 36 1.374947 CGAAAGCTTCCCACCCTCA 59.625 57.895 0.00 0.00 0.00 3.86
36 37 1.377333 CCGAAAGCTTCCCACCCTC 60.377 63.158 0.00 0.00 0.00 4.30
37 38 1.208165 ATCCGAAAGCTTCCCACCCT 61.208 55.000 0.00 0.00 0.00 4.34
38 39 0.748367 GATCCGAAAGCTTCCCACCC 60.748 60.000 0.00 0.00 0.00 4.61
39 40 0.748367 GGATCCGAAAGCTTCCCACC 60.748 60.000 0.00 0.00 0.00 4.61
40 41 0.748367 GGGATCCGAAAGCTTCCCAC 60.748 60.000 13.16 0.00 45.20 4.61
41 42 1.607612 GGGATCCGAAAGCTTCCCA 59.392 57.895 13.16 0.00 45.20 4.37
42 43 1.152943 GGGGATCCGAAAGCTTCCC 60.153 63.158 10.06 10.06 45.16 3.97
43 44 4.561452 GGGGATCCGAAAGCTTCC 57.439 61.111 5.45 0.00 0.00 3.46
53 54 3.467226 TCTTGCCGTCGGGGATCC 61.467 66.667 14.38 1.92 38.47 3.36
54 55 2.202892 GTCTTGCCGTCGGGGATC 60.203 66.667 14.38 0.00 38.47 3.36
55 56 4.143333 CGTCTTGCCGTCGGGGAT 62.143 66.667 14.38 0.00 38.47 3.85
90 91 4.382320 TACAACGCCGCCACCTCC 62.382 66.667 0.00 0.00 0.00 4.30
91 92 2.813908 CTACAACGCCGCCACCTC 60.814 66.667 0.00 0.00 0.00 3.85
92 93 4.388499 CCTACAACGCCGCCACCT 62.388 66.667 0.00 0.00 0.00 4.00
109 110 2.124445 GGTACCGCAACATCCCCC 60.124 66.667 0.00 0.00 0.00 5.40
110 111 2.512974 CGGTACCGCAACATCCCC 60.513 66.667 23.44 0.00 0.00 4.81
111 112 2.512974 CCGGTACCGCAACATCCC 60.513 66.667 29.15 0.00 38.24 3.85
112 113 3.199891 GCCGGTACCGCAACATCC 61.200 66.667 29.15 6.30 38.24 3.51
113 114 2.036006 TTGCCGGTACCGCAACATC 61.036 57.895 29.15 12.35 38.24 3.06
114 115 2.032834 TTGCCGGTACCGCAACAT 59.967 55.556 29.15 0.00 38.24 2.71
115 116 2.973600 GTTGCCGGTACCGCAACA 60.974 61.111 39.40 30.06 45.73 3.33
116 117 3.729698 GGTTGCCGGTACCGCAAC 61.730 66.667 38.27 38.27 45.72 4.17
127 128 4.119442 TCTTGTTACTCTATCGGTTGCC 57.881 45.455 0.00 0.00 0.00 4.52
128 129 6.147328 ACTTTTCTTGTTACTCTATCGGTTGC 59.853 38.462 0.00 0.00 0.00 4.17
129 130 7.360101 CCACTTTTCTTGTTACTCTATCGGTTG 60.360 40.741 0.00 0.00 0.00 3.77
130 131 6.649557 CCACTTTTCTTGTTACTCTATCGGTT 59.350 38.462 0.00 0.00 0.00 4.44
131 132 6.164176 CCACTTTTCTTGTTACTCTATCGGT 58.836 40.000 0.00 0.00 0.00 4.69
132 133 5.581085 CCCACTTTTCTTGTTACTCTATCGG 59.419 44.000 0.00 0.00 0.00 4.18
133 134 5.063564 GCCCACTTTTCTTGTTACTCTATCG 59.936 44.000 0.00 0.00 0.00 2.92
134 135 5.063564 CGCCCACTTTTCTTGTTACTCTATC 59.936 44.000 0.00 0.00 0.00 2.08
135 136 4.935808 CGCCCACTTTTCTTGTTACTCTAT 59.064 41.667 0.00 0.00 0.00 1.98
136 137 4.202284 ACGCCCACTTTTCTTGTTACTCTA 60.202 41.667 0.00 0.00 0.00 2.43
137 138 3.139077 CGCCCACTTTTCTTGTTACTCT 58.861 45.455 0.00 0.00 0.00 3.24
138 139 2.876550 ACGCCCACTTTTCTTGTTACTC 59.123 45.455 0.00 0.00 0.00 2.59
139 140 2.876550 GACGCCCACTTTTCTTGTTACT 59.123 45.455 0.00 0.00 0.00 2.24
140 141 2.349155 CGACGCCCACTTTTCTTGTTAC 60.349 50.000 0.00 0.00 0.00 2.50
141 142 1.868498 CGACGCCCACTTTTCTTGTTA 59.132 47.619 0.00 0.00 0.00 2.41
142 143 0.661020 CGACGCCCACTTTTCTTGTT 59.339 50.000 0.00 0.00 0.00 2.83
143 144 1.164041 CCGACGCCCACTTTTCTTGT 61.164 55.000 0.00 0.00 0.00 3.16
144 145 1.574428 CCGACGCCCACTTTTCTTG 59.426 57.895 0.00 0.00 0.00 3.02
145 146 2.258726 GCCGACGCCCACTTTTCTT 61.259 57.895 0.00 0.00 0.00 2.52
146 147 2.668550 GCCGACGCCCACTTTTCT 60.669 61.111 0.00 0.00 0.00 2.52
147 148 2.548295 TTGCCGACGCCCACTTTTC 61.548 57.895 0.00 0.00 0.00 2.29
148 149 2.517402 TTGCCGACGCCCACTTTT 60.517 55.556 0.00 0.00 0.00 2.27
149 150 3.284449 GTTGCCGACGCCCACTTT 61.284 61.111 0.00 0.00 0.00 2.66
158 159 3.119096 GCCTCCTTCGTTGCCGAC 61.119 66.667 0.00 0.00 44.13 4.79
159 160 4.735132 CGCCTCCTTCGTTGCCGA 62.735 66.667 0.00 0.00 42.41 5.54
176 177 2.597510 AACAGCAAACCCTCGCCC 60.598 61.111 0.00 0.00 0.00 6.13
177 178 2.644992 CAACAGCAAACCCTCGCC 59.355 61.111 0.00 0.00 0.00 5.54
178 179 1.452145 TTCCAACAGCAAACCCTCGC 61.452 55.000 0.00 0.00 0.00 5.03
179 180 1.247567 ATTCCAACAGCAAACCCTCG 58.752 50.000 0.00 0.00 0.00 4.63
180 181 2.755103 CCTATTCCAACAGCAAACCCTC 59.245 50.000 0.00 0.00 0.00 4.30
181 182 2.378547 TCCTATTCCAACAGCAAACCCT 59.621 45.455 0.00 0.00 0.00 4.34
182 183 2.755103 CTCCTATTCCAACAGCAAACCC 59.245 50.000 0.00 0.00 0.00 4.11
183 184 3.686016 TCTCCTATTCCAACAGCAAACC 58.314 45.455 0.00 0.00 0.00 3.27
184 185 3.691609 CCTCTCCTATTCCAACAGCAAAC 59.308 47.826 0.00 0.00 0.00 2.93
185 186 3.587061 TCCTCTCCTATTCCAACAGCAAA 59.413 43.478 0.00 0.00 0.00 3.68
186 187 3.181329 TCCTCTCCTATTCCAACAGCAA 58.819 45.455 0.00 0.00 0.00 3.91
187 188 2.832838 TCCTCTCCTATTCCAACAGCA 58.167 47.619 0.00 0.00 0.00 4.41
188 189 3.389329 TCATCCTCTCCTATTCCAACAGC 59.611 47.826 0.00 0.00 0.00 4.40
189 190 4.202305 GGTCATCCTCTCCTATTCCAACAG 60.202 50.000 0.00 0.00 0.00 3.16
190 191 3.711704 GGTCATCCTCTCCTATTCCAACA 59.288 47.826 0.00 0.00 0.00 3.33
191 192 3.711704 TGGTCATCCTCTCCTATTCCAAC 59.288 47.826 0.00 0.00 34.23 3.77
192 193 4.007581 TGGTCATCCTCTCCTATTCCAA 57.992 45.455 0.00 0.00 34.23 3.53
193 194 3.706389 TGGTCATCCTCTCCTATTCCA 57.294 47.619 0.00 0.00 34.23 3.53
194 195 4.349342 ACATTGGTCATCCTCTCCTATTCC 59.651 45.833 0.00 0.00 34.23 3.01
195 196 5.303971 CACATTGGTCATCCTCTCCTATTC 58.696 45.833 0.00 0.00 34.23 1.75
196 197 4.445448 GCACATTGGTCATCCTCTCCTATT 60.445 45.833 0.00 0.00 34.23 1.73
197 198 3.072184 GCACATTGGTCATCCTCTCCTAT 59.928 47.826 0.00 0.00 34.23 2.57
198 199 2.435805 GCACATTGGTCATCCTCTCCTA 59.564 50.000 0.00 0.00 34.23 2.94
199 200 1.211457 GCACATTGGTCATCCTCTCCT 59.789 52.381 0.00 0.00 34.23 3.69
200 201 1.673168 GCACATTGGTCATCCTCTCC 58.327 55.000 0.00 0.00 34.23 3.71
201 202 1.065199 TGGCACATTGGTCATCCTCTC 60.065 52.381 0.00 0.00 34.23 3.20
202 203 0.994247 TGGCACATTGGTCATCCTCT 59.006 50.000 0.00 0.00 34.23 3.69
203 204 1.098050 GTGGCACATTGGTCATCCTC 58.902 55.000 13.86 0.00 44.52 3.71
204 205 0.323725 GGTGGCACATTGGTCATCCT 60.324 55.000 20.82 0.00 44.52 3.24
205 206 1.656818 CGGTGGCACATTGGTCATCC 61.657 60.000 20.82 0.00 44.52 3.51
206 207 0.676466 TCGGTGGCACATTGGTCATC 60.676 55.000 20.82 0.00 44.52 2.92
207 208 0.960364 GTCGGTGGCACATTGGTCAT 60.960 55.000 20.82 0.00 44.52 3.06
208 209 1.599518 GTCGGTGGCACATTGGTCA 60.600 57.895 20.82 0.00 44.52 4.02
209 210 0.036765 TAGTCGGTGGCACATTGGTC 60.037 55.000 20.82 0.00 44.52 4.02
210 211 0.036388 CTAGTCGGTGGCACATTGGT 60.036 55.000 20.82 1.98 44.52 3.67
211 212 1.369091 GCTAGTCGGTGGCACATTGG 61.369 60.000 20.82 5.45 44.52 3.16
212 213 1.695893 CGCTAGTCGGTGGCACATTG 61.696 60.000 20.82 8.68 44.52 2.82
213 214 1.447838 CGCTAGTCGGTGGCACATT 60.448 57.895 20.82 3.88 44.52 2.71
214 215 2.184322 CGCTAGTCGGTGGCACAT 59.816 61.111 20.82 4.57 44.52 3.21
223 224 0.809385 TCTTCCTGAACCGCTAGTCG 59.191 55.000 0.00 0.00 38.08 4.18
224 225 1.135333 CCTCTTCCTGAACCGCTAGTC 59.865 57.143 0.00 0.00 0.00 2.59
225 226 1.187087 CCTCTTCCTGAACCGCTAGT 58.813 55.000 0.00 0.00 0.00 2.57
226 227 1.407258 CTCCTCTTCCTGAACCGCTAG 59.593 57.143 0.00 0.00 0.00 3.42
227 228 1.272536 ACTCCTCTTCCTGAACCGCTA 60.273 52.381 0.00 0.00 0.00 4.26
228 229 0.543174 ACTCCTCTTCCTGAACCGCT 60.543 55.000 0.00 0.00 0.00 5.52
229 230 1.135333 CTACTCCTCTTCCTGAACCGC 59.865 57.143 0.00 0.00 0.00 5.68
230 231 2.424246 GTCTACTCCTCTTCCTGAACCG 59.576 54.545 0.00 0.00 0.00 4.44
231 232 3.432378 TGTCTACTCCTCTTCCTGAACC 58.568 50.000 0.00 0.00 0.00 3.62
232 233 4.157105 GTCTGTCTACTCCTCTTCCTGAAC 59.843 50.000 0.00 0.00 0.00 3.18
233 234 4.337145 GTCTGTCTACTCCTCTTCCTGAA 58.663 47.826 0.00 0.00 0.00 3.02
234 235 3.620226 CGTCTGTCTACTCCTCTTCCTGA 60.620 52.174 0.00 0.00 0.00 3.86
235 236 2.680841 CGTCTGTCTACTCCTCTTCCTG 59.319 54.545 0.00 0.00 0.00 3.86
236 237 2.942306 GCGTCTGTCTACTCCTCTTCCT 60.942 54.545 0.00 0.00 0.00 3.36
237 238 1.402613 GCGTCTGTCTACTCCTCTTCC 59.597 57.143 0.00 0.00 0.00 3.46
238 239 1.062880 CGCGTCTGTCTACTCCTCTTC 59.937 57.143 0.00 0.00 0.00 2.87
239 240 1.088306 CGCGTCTGTCTACTCCTCTT 58.912 55.000 0.00 0.00 0.00 2.85
240 241 0.745128 CCGCGTCTGTCTACTCCTCT 60.745 60.000 4.92 0.00 0.00 3.69
241 242 1.722677 CCGCGTCTGTCTACTCCTC 59.277 63.158 4.92 0.00 0.00 3.71
242 243 2.408241 GCCGCGTCTGTCTACTCCT 61.408 63.158 4.92 0.00 0.00 3.69
243 244 2.102553 GCCGCGTCTGTCTACTCC 59.897 66.667 4.92 0.00 0.00 3.85
244 245 1.514443 GTGCCGCGTCTGTCTACTC 60.514 63.158 4.92 0.00 0.00 2.59
245 246 2.567049 GTGCCGCGTCTGTCTACT 59.433 61.111 4.92 0.00 0.00 2.57
246 247 2.874780 CGTGCCGCGTCTGTCTAC 60.875 66.667 4.92 0.00 35.54 2.59
247 248 4.771356 GCGTGCCGCGTCTGTCTA 62.771 66.667 4.92 0.00 44.55 2.59
257 258 1.870016 ACAAAACAAACGCGTGCCG 60.870 52.632 14.98 6.93 44.21 5.69
258 259 1.073768 ACACAAAACAAACGCGTGCC 61.074 50.000 14.98 0.00 0.00 5.01
259 260 0.711118 AACACAAAACAAACGCGTGC 59.289 45.000 14.98 0.00 0.00 5.34
260 261 1.008946 CGAACACAAAACAAACGCGTG 60.009 47.619 14.98 3.14 0.00 5.34
261 262 1.252235 CGAACACAAAACAAACGCGT 58.748 45.000 5.58 5.58 0.00 6.01
262 263 0.045419 GCGAACACAAAACAAACGCG 60.045 50.000 3.53 3.53 35.78 6.01
263 264 0.045419 CGCGAACACAAAACAAACGC 60.045 50.000 0.00 0.00 40.91 4.84
264 265 0.045419 GCGCGAACACAAAACAAACG 60.045 50.000 12.10 0.00 0.00 3.60
265 266 0.296349 GGCGCGAACACAAAACAAAC 59.704 50.000 12.10 0.00 0.00 2.93
266 267 1.134530 CGGCGCGAACACAAAACAAA 61.135 50.000 12.10 0.00 0.00 2.83
267 268 1.583967 CGGCGCGAACACAAAACAA 60.584 52.632 12.10 0.00 0.00 2.83
268 269 2.023461 CGGCGCGAACACAAAACA 59.977 55.556 12.10 0.00 0.00 2.83
269 270 2.001880 GTCGGCGCGAACACAAAAC 61.002 57.895 12.10 0.00 37.72 2.43
270 271 2.325166 GTCGGCGCGAACACAAAA 59.675 55.556 12.10 0.00 37.72 2.44
271 272 3.990806 CGTCGGCGCGAACACAAA 61.991 61.111 12.10 0.00 37.72 2.83
281 282 0.719465 AAGTCTAATTTGCGTCGGCG 59.281 50.000 4.29 4.29 44.10 6.46
282 283 1.730064 TGAAGTCTAATTTGCGTCGGC 59.270 47.619 0.00 0.00 40.52 5.54
283 284 4.398549 TTTGAAGTCTAATTTGCGTCGG 57.601 40.909 0.00 0.00 0.00 4.79
284 285 6.077197 TCATTTTGAAGTCTAATTTGCGTCG 58.923 36.000 0.00 0.00 0.00 5.12
285 286 7.148967 GGTTCATTTTGAAGTCTAATTTGCGTC 60.149 37.037 0.00 0.00 37.00 5.19
286 287 6.640907 GGTTCATTTTGAAGTCTAATTTGCGT 59.359 34.615 0.00 0.00 37.00 5.24
287 288 6.183359 CGGTTCATTTTGAAGTCTAATTTGCG 60.183 38.462 0.00 0.00 37.00 4.85
288 289 6.861055 TCGGTTCATTTTGAAGTCTAATTTGC 59.139 34.615 0.00 0.00 37.00 3.68
289 290 8.795786 TTCGGTTCATTTTGAAGTCTAATTTG 57.204 30.769 0.00 0.00 37.00 2.32
290 291 9.810545 TTTTCGGTTCATTTTGAAGTCTAATTT 57.189 25.926 0.00 0.00 37.00 1.82
291 292 9.810545 TTTTTCGGTTCATTTTGAAGTCTAATT 57.189 25.926 0.00 0.00 37.00 1.40
292 293 9.463443 CTTTTTCGGTTCATTTTGAAGTCTAAT 57.537 29.630 0.00 0.00 37.00 1.73
293 294 8.679100 TCTTTTTCGGTTCATTTTGAAGTCTAA 58.321 29.630 0.00 0.00 37.00 2.10
294 295 8.215926 TCTTTTTCGGTTCATTTTGAAGTCTA 57.784 30.769 0.00 0.00 37.00 2.59
295 296 7.095695 TCTTTTTCGGTTCATTTTGAAGTCT 57.904 32.000 0.00 0.00 37.00 3.24
296 297 7.749539 TTCTTTTTCGGTTCATTTTGAAGTC 57.250 32.000 0.00 0.00 37.00 3.01
297 298 7.167468 CGATTCTTTTTCGGTTCATTTTGAAGT 59.833 33.333 0.00 0.00 37.00 3.01
298 299 7.493313 CGATTCTTTTTCGGTTCATTTTGAAG 58.507 34.615 0.00 0.00 37.00 3.02
299 300 7.388290 CGATTCTTTTTCGGTTCATTTTGAA 57.612 32.000 0.00 0.00 31.80 2.69
300 301 6.984740 CGATTCTTTTTCGGTTCATTTTGA 57.015 33.333 0.00 0.00 33.05 2.69
311 312 1.135689 CCACCTGCCGATTCTTTTTCG 60.136 52.381 0.00 0.00 36.38 3.46
312 313 2.159382 TCCACCTGCCGATTCTTTTTC 58.841 47.619 0.00 0.00 0.00 2.29
313 314 2.286365 TCCACCTGCCGATTCTTTTT 57.714 45.000 0.00 0.00 0.00 1.94
314 315 2.094675 CATCCACCTGCCGATTCTTTT 58.905 47.619 0.00 0.00 0.00 2.27
315 316 1.281867 TCATCCACCTGCCGATTCTTT 59.718 47.619 0.00 0.00 0.00 2.52
316 317 0.911769 TCATCCACCTGCCGATTCTT 59.088 50.000 0.00 0.00 0.00 2.52
317 318 0.911769 TTCATCCACCTGCCGATTCT 59.088 50.000 0.00 0.00 0.00 2.40
318 319 1.750193 TTTCATCCACCTGCCGATTC 58.250 50.000 0.00 0.00 0.00 2.52
319 320 2.214376 TTTTCATCCACCTGCCGATT 57.786 45.000 0.00 0.00 0.00 3.34
320 321 1.818674 GTTTTTCATCCACCTGCCGAT 59.181 47.619 0.00 0.00 0.00 4.18
321 322 1.243902 GTTTTTCATCCACCTGCCGA 58.756 50.000 0.00 0.00 0.00 5.54
322 323 0.109781 CGTTTTTCATCCACCTGCCG 60.110 55.000 0.00 0.00 0.00 5.69
323 324 0.243636 CCGTTTTTCATCCACCTGCC 59.756 55.000 0.00 0.00 0.00 4.85
324 325 1.068541 GTCCGTTTTTCATCCACCTGC 60.069 52.381 0.00 0.00 0.00 4.85
325 326 1.196808 CGTCCGTTTTTCATCCACCTG 59.803 52.381 0.00 0.00 0.00 4.00
326 327 1.202722 ACGTCCGTTTTTCATCCACCT 60.203 47.619 0.00 0.00 0.00 4.00
327 328 1.069500 CACGTCCGTTTTTCATCCACC 60.069 52.381 0.00 0.00 0.00 4.61
328 329 1.600485 ACACGTCCGTTTTTCATCCAC 59.400 47.619 0.00 0.00 0.00 4.02
329 330 1.600013 CACACGTCCGTTTTTCATCCA 59.400 47.619 0.00 0.00 0.00 3.41
330 331 1.600485 ACACACGTCCGTTTTTCATCC 59.400 47.619 0.00 0.00 0.00 3.51
331 332 2.899977 GACACACGTCCGTTTTTCATC 58.100 47.619 0.00 0.00 36.02 2.92
344 345 2.469501 CGTCGATTTAAACGGACACACG 60.470 50.000 16.36 11.35 35.32 4.49
345 346 2.719688 GCGTCGATTTAAACGGACACAC 60.720 50.000 16.36 5.75 39.24 3.82
346 347 1.456544 GCGTCGATTTAAACGGACACA 59.543 47.619 16.36 0.00 39.24 3.72
347 348 1.456544 TGCGTCGATTTAAACGGACAC 59.543 47.619 16.36 9.93 39.24 3.67
348 349 1.780806 TGCGTCGATTTAAACGGACA 58.219 45.000 16.36 8.09 39.24 4.02
349 350 3.088552 CAATGCGTCGATTTAAACGGAC 58.911 45.455 0.00 9.38 41.97 4.79
350 351 2.737783 ACAATGCGTCGATTTAAACGGA 59.262 40.909 0.00 2.90 43.29 4.69
351 352 2.837878 CACAATGCGTCGATTTAAACGG 59.162 45.455 0.00 0.00 39.24 4.44
352 353 2.837878 CCACAATGCGTCGATTTAAACG 59.162 45.455 0.00 0.00 41.68 3.60
353 354 2.592459 GCCACAATGCGTCGATTTAAAC 59.408 45.455 0.00 0.00 0.00 2.01
354 355 2.857618 GCCACAATGCGTCGATTTAAA 58.142 42.857 0.00 0.00 0.00 1.52
355 356 2.535934 GCCACAATGCGTCGATTTAA 57.464 45.000 0.00 0.00 0.00 1.52
365 366 4.423732 AGACATAAAAATCGCCACAATGC 58.576 39.130 0.00 0.00 0.00 3.56
366 367 5.676744 CGTAGACATAAAAATCGCCACAATG 59.323 40.000 0.00 0.00 0.00 2.82
367 368 5.353123 ACGTAGACATAAAAATCGCCACAAT 59.647 36.000 0.00 0.00 0.00 2.71
368 369 4.691685 ACGTAGACATAAAAATCGCCACAA 59.308 37.500 0.00 0.00 0.00 3.33
369 370 4.247258 ACGTAGACATAAAAATCGCCACA 58.753 39.130 0.00 0.00 0.00 4.17
370 371 4.547587 CGACGTAGACATAAAAATCGCCAC 60.548 45.833 0.00 0.00 0.00 5.01
371 372 3.548668 CGACGTAGACATAAAAATCGCCA 59.451 43.478 0.00 0.00 0.00 5.69
372 373 3.792956 TCGACGTAGACATAAAAATCGCC 59.207 43.478 0.00 0.00 0.00 5.54
373 374 4.316930 GGTCGACGTAGACATAAAAATCGC 60.317 45.833 26.66 5.13 42.62 4.58
374 375 5.032863 AGGTCGACGTAGACATAAAAATCG 58.967 41.667 26.66 4.73 42.62 3.34
375 376 7.975866 TTAGGTCGACGTAGACATAAAAATC 57.024 36.000 26.25 10.35 42.15 2.17
380 381 4.629634 TCGTTTAGGTCGACGTAGACATAA 59.370 41.667 25.18 25.18 42.99 1.90
381 382 4.180817 TCGTTTAGGTCGACGTAGACATA 58.819 43.478 27.78 22.11 42.62 2.29
382 383 3.002791 TCGTTTAGGTCGACGTAGACAT 58.997 45.455 27.78 23.11 42.62 3.06
383 384 2.412870 TCGTTTAGGTCGACGTAGACA 58.587 47.619 27.78 17.29 42.62 3.41
384 385 3.156753 GTTCGTTTAGGTCGACGTAGAC 58.843 50.000 22.23 22.23 40.03 2.59
385 386 2.159841 CGTTCGTTTAGGTCGACGTAGA 60.160 50.000 16.64 10.79 40.03 2.59
386 387 2.161278 CGTTCGTTTAGGTCGACGTAG 58.839 52.381 16.64 7.26 40.03 3.51
387 388 1.724654 GCGTTCGTTTAGGTCGACGTA 60.725 52.381 13.68 13.68 40.03 3.57
388 389 0.998727 GCGTTCGTTTAGGTCGACGT 60.999 55.000 15.89 15.89 40.03 4.34
389 390 1.692729 GCGTTCGTTTAGGTCGACG 59.307 57.895 9.92 0.00 40.43 5.12
390 391 1.692729 CGCGTTCGTTTAGGTCGAC 59.307 57.895 7.13 7.13 37.05 4.20
391 392 2.082366 GCGCGTTCGTTTAGGTCGA 61.082 57.895 8.43 0.00 38.14 4.20
392 393 2.389143 GCGCGTTCGTTTAGGTCG 59.611 61.111 8.43 0.00 38.14 4.79
393 394 2.367344 ACGCGCGTTCGTTTAGGTC 61.367 57.895 32.73 0.00 40.07 3.85
394 395 2.355009 ACGCGCGTTCGTTTAGGT 60.355 55.556 32.73 2.20 40.07 3.08
395 396 2.093246 CACGCGCGTTCGTTTAGG 59.907 61.111 35.90 16.02 41.21 2.69
396 397 2.093246 CCACGCGCGTTCGTTTAG 59.907 61.111 35.90 20.05 41.21 1.85
397 398 2.354422 TCCACGCGCGTTCGTTTA 60.354 55.556 35.90 12.11 41.21 2.01
398 399 3.992019 GTCCACGCGCGTTCGTTT 61.992 61.111 35.90 7.85 41.21 3.60
402 403 4.117372 CTTCGTCCACGCGCGTTC 62.117 66.667 35.90 23.99 39.60 3.95
406 407 2.883730 TATGCTTCGTCCACGCGC 60.884 61.111 5.73 0.00 39.60 6.86
407 408 2.845739 CGTATGCTTCGTCCACGCG 61.846 63.158 3.53 3.53 39.60 6.01
408 409 0.870307 ATCGTATGCTTCGTCCACGC 60.870 55.000 0.00 0.00 39.60 5.34
409 410 1.121240 GATCGTATGCTTCGTCCACG 58.879 55.000 0.00 0.00 41.45 4.94
410 411 2.120232 CAGATCGTATGCTTCGTCCAC 58.880 52.381 0.00 0.00 0.00 4.02
411 412 1.067060 CCAGATCGTATGCTTCGTCCA 59.933 52.381 0.00 0.00 0.00 4.02
412 413 1.603172 CCCAGATCGTATGCTTCGTCC 60.603 57.143 0.00 0.00 0.00 4.79
413 414 1.337071 TCCCAGATCGTATGCTTCGTC 59.663 52.381 0.00 0.00 0.00 4.20
414 415 1.067212 GTCCCAGATCGTATGCTTCGT 59.933 52.381 0.00 0.00 0.00 3.85
415 416 1.067060 TGTCCCAGATCGTATGCTTCG 59.933 52.381 0.00 0.00 0.00 3.79
425 426 1.745489 GGCGGTTGTGTCCCAGATC 60.745 63.158 0.00 0.00 0.00 2.75
460 461 2.325082 CCAAAACAGCTCCGACCCG 61.325 63.158 0.00 0.00 0.00 5.28
499 500 3.131478 GAACCGGCCGTTCCATGG 61.131 66.667 26.12 4.97 44.46 3.66
535 536 0.250234 AATAGCTGGACTGCTCGCAA 59.750 50.000 6.98 0.00 42.97 4.85
536 537 0.250234 AAATAGCTGGACTGCTCGCA 59.750 50.000 6.98 0.00 42.97 5.10
577 578 0.903924 CCATCAAACCCCATGCCACA 60.904 55.000 0.00 0.00 0.00 4.17
594 595 0.539986 GAGGATTGGCTTCCGTACCA 59.460 55.000 2.10 0.00 40.94 3.25
609 610 6.491714 TGGTTTGAATTTTGAATTGGAGGA 57.508 33.333 0.00 0.00 0.00 3.71
678 679 3.950794 GAGTGGGCGCGTGATGGAA 62.951 63.158 8.43 0.00 0.00 3.53
728 741 0.323360 TAACAGAATGGCAGGTGGGC 60.323 55.000 0.00 0.00 43.62 5.36
822 835 1.276622 CTTATATAGGCCGGGGCAGT 58.723 55.000 23.67 12.79 44.11 4.40
857 870 0.546122 CCGATGGTGATTGGAAGGGA 59.454 55.000 0.00 0.00 35.23 4.20
960 978 1.423921 GACCCAAAACCTTCTCCTCCA 59.576 52.381 0.00 0.00 0.00 3.86
976 999 2.877974 GCGACACACACAACGACCC 61.878 63.158 0.00 0.00 0.00 4.46
980 1003 3.995669 CCGGCGACACACACAACG 61.996 66.667 9.30 0.00 0.00 4.10
1047 1074 4.742649 AGCGCCTCGTCCTCCTCA 62.743 66.667 2.29 0.00 0.00 3.86
1419 1449 2.037367 CCAGTGGGACTCTCGGGA 59.963 66.667 0.00 0.00 35.59 5.14
1512 1542 2.407616 CTCACGTCCGCGCTGATA 59.592 61.111 5.56 0.00 42.83 2.15
1686 1716 2.046988 TACGAGGACGACGGCTGA 60.047 61.111 0.00 0.00 42.66 4.26
1891 1922 8.693504 GGTTTTTACTACTGGCGTTTTATTTTC 58.306 33.333 0.00 0.00 0.00 2.29
1937 1972 1.144969 CGGCGACTTCTTTGCACTTA 58.855 50.000 0.00 0.00 36.11 2.24
2014 2049 5.347364 CGCAAACAGAAACCAGAAAAGAAAA 59.653 36.000 0.00 0.00 0.00 2.29
2092 2131 1.710996 TTTCCCCCTTGCCGACTTCA 61.711 55.000 0.00 0.00 0.00 3.02
2122 2162 8.739972 AGCAATAATTAACAATTTCCGTTCTCT 58.260 29.630 0.00 0.00 32.38 3.10
2262 2304 5.278266 CGGAACCATCAAAGAAACTTGCTAA 60.278 40.000 0.00 0.00 0.00 3.09
2268 2310 2.293399 GTGCGGAACCATCAAAGAAACT 59.707 45.455 0.00 0.00 0.00 2.66
2272 2314 1.522668 CTGTGCGGAACCATCAAAGA 58.477 50.000 0.00 0.00 0.00 2.52
2274 2316 0.109532 TCCTGTGCGGAACCATCAAA 59.890 50.000 0.00 0.00 39.40 2.69
2284 2326 0.459899 TACATGCTACTCCTGTGCGG 59.540 55.000 0.00 0.00 0.00 5.69
2285 2327 1.845266 CTACATGCTACTCCTGTGCG 58.155 55.000 0.00 0.00 0.00 5.34
2286 2328 1.576356 GCTACATGCTACTCCTGTGC 58.424 55.000 0.00 0.00 38.95 4.57
2287 2329 1.845266 CGCTACATGCTACTCCTGTG 58.155 55.000 0.00 0.00 40.11 3.66
2290 2332 1.742768 GGCGCTACATGCTACTCCT 59.257 57.895 7.64 0.00 40.11 3.69
2293 2335 2.417516 CCGGCGCTACATGCTACT 59.582 61.111 7.64 0.00 40.11 2.57
2294 2336 3.338676 GCCGGCGCTACATGCTAC 61.339 66.667 12.58 0.00 40.11 3.58
2296 2338 4.552365 ATGCCGGCGCTACATGCT 62.552 61.111 23.90 0.00 40.11 3.79
2306 2349 0.815213 TAATGTCTGAGCATGCCGGC 60.815 55.000 22.73 22.73 0.00 6.13
2399 2450 0.249238 GACGCCATGTTTGGTTTGCA 60.249 50.000 0.00 0.00 45.57 4.08
2400 2451 0.943835 GGACGCCATGTTTGGTTTGC 60.944 55.000 0.00 0.00 45.57 3.68
2470 2521 1.578206 GGCTTGTCGTTTCTGCTCCC 61.578 60.000 0.00 0.00 0.00 4.30
2549 2600 0.865769 CTGCCGCTACGACTTTTGTT 59.134 50.000 0.00 0.00 0.00 2.83
2676 2727 0.593128 GCCAACTGTGAAATGTCGCT 59.407 50.000 0.00 0.00 35.17 4.93
2718 2769 4.729868 GGTGAACAGCCAGGGATATTTAT 58.270 43.478 0.00 0.00 0.00 1.40
2725 2867 1.534476 TACGGTGAACAGCCAGGGA 60.534 57.895 0.00 0.00 0.00 4.20
2805 2947 6.039270 CCATCCCTGCGTCTATTAAAATTTGA 59.961 38.462 0.00 0.00 0.00 2.69
2809 2951 5.048846 ACCATCCCTGCGTCTATTAAAAT 57.951 39.130 0.00 0.00 0.00 1.82
2851 3387 0.249031 AAGGCTTTCGCAAACAGCAC 60.249 50.000 0.00 0.00 46.13 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.