Multiple sequence alignment - TraesCS6B01G200600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G200600 chr6B 100.000 3313 0 0 1 3313 240322395 240325707 0.000000e+00 6119.0
1 TraesCS6B01G200600 chr6B 86.829 410 48 5 3 408 314556684 314557091 1.400000e-123 453.0
2 TraesCS6B01G200600 chr6B 83.893 447 64 8 3 442 122993159 122992714 1.420000e-113 420.0
3 TraesCS6B01G200600 chr6B 96.471 170 6 0 3144 3313 240330915 240331084 7.000000e-72 281.0
4 TraesCS6B01G200600 chr6A 93.906 2199 86 16 953 3147 184818912 184821066 0.000000e+00 3275.0
5 TraesCS6B01G200600 chr6A 83.803 284 42 3 616 895 184747480 184747763 1.960000e-67 267.0
6 TraesCS6B01G200600 chr6D 94.011 1603 63 9 968 2568 140219571 140221142 0.000000e+00 2398.0
7 TraesCS6B01G200600 chr6D 94.737 209 10 1 720 928 140219256 140219463 1.150000e-84 324.0
8 TraesCS6B01G200600 chr3D 83.979 568 62 18 3 541 115018340 115018907 4.900000e-143 518.0
9 TraesCS6B01G200600 chr1D 83.837 563 69 13 3 544 345832874 345833435 1.760000e-142 516.0
10 TraesCS6B01G200600 chr2B 87.799 418 45 5 3 416 254518602 254519017 4.970000e-133 484.0
11 TraesCS6B01G200600 chr2B 90.650 246 16 3 2493 2738 422731478 422731240 1.480000e-83 320.0
12 TraesCS6B01G200600 chr3A 87.105 411 47 6 3 408 606057871 606058280 8.380000e-126 460.0
13 TraesCS6B01G200600 chr3A 96.471 170 6 0 3144 3313 750065507 750065676 7.000000e-72 281.0
14 TraesCS6B01G200600 chr7D 86.978 407 46 6 3 404 63744018 63743614 5.040000e-123 451.0
15 TraesCS6B01G200600 chr7D 84.969 326 40 7 2093 2410 580003352 580003676 4.120000e-84 322.0
16 TraesCS6B01G200600 chr7D 84.862 218 29 3 2108 2322 580005515 580005731 2.000000e-52 217.0
17 TraesCS6B01G200600 chr5D 86.650 412 47 7 3 408 463969406 463969815 1.810000e-122 449.0
18 TraesCS6B01G200600 chr4A 86.408 412 50 4 1 408 435045820 435045411 2.350000e-121 446.0
19 TraesCS6B01G200600 chr7A 85.897 312 37 5 2106 2410 671500422 671500733 3.190000e-85 326.0
20 TraesCS6B01G200600 chrUn 90.244 246 12 4 2493 2738 58970182 58969949 8.930000e-81 311.0
21 TraesCS6B01G200600 chrUn 90.244 246 12 4 2493 2738 266289619 266289386 8.930000e-81 311.0
22 TraesCS6B01G200600 chrUn 90.244 246 12 4 2493 2738 266298546 266298313 8.930000e-81 311.0
23 TraesCS6B01G200600 chrUn 89.960 249 13 4 2490 2738 421987591 421987827 8.930000e-81 311.0
24 TraesCS6B01G200600 chrUn 97.110 173 5 0 3141 3313 119048962 119049134 3.230000e-75 292.0
25 TraesCS6B01G200600 chr7B 84.615 312 41 5 2106 2410 646369018 646369329 1.490000e-78 303.0
26 TraesCS6B01G200600 chr7B 95.455 176 6 2 3139 3313 611773724 611773550 2.520000e-71 279.0
27 TraesCS6B01G200600 chr7B 84.821 224 32 2 2094 2315 646371002 646371225 1.200000e-54 224.0
28 TraesCS6B01G200600 chr1B 98.235 170 3 0 3144 3313 143632887 143632718 6.950000e-77 298.0
29 TraesCS6B01G200600 chr1B 98.235 170 3 0 3144 3313 143638141 143637972 6.950000e-77 298.0
30 TraesCS6B01G200600 chr3B 97.647 170 4 0 3144 3313 317616071 317615902 3.230000e-75 292.0
31 TraesCS6B01G200600 chr3B 97.059 170 5 0 3144 3313 317621076 317620907 1.500000e-73 287.0
32 TraesCS6B01G200600 chr5B 97.059 170 5 0 3144 3313 204178794 204178963 1.500000e-73 287.0
33 TraesCS6B01G200600 chr2A 90.000 50 0 5 518 563 4812420 4812468 3.570000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G200600 chr6B 240322395 240325707 3312 False 6119.0 6119 100.0000 1 3313 1 chr6B.!!$F1 3312
1 TraesCS6B01G200600 chr6A 184818912 184821066 2154 False 3275.0 3275 93.9060 953 3147 1 chr6A.!!$F2 2194
2 TraesCS6B01G200600 chr6D 140219256 140221142 1886 False 1361.0 2398 94.3740 720 2568 2 chr6D.!!$F1 1848
3 TraesCS6B01G200600 chr3D 115018340 115018907 567 False 518.0 518 83.9790 3 541 1 chr3D.!!$F1 538
4 TraesCS6B01G200600 chr1D 345832874 345833435 561 False 516.0 516 83.8370 3 544 1 chr1D.!!$F1 541
5 TraesCS6B01G200600 chr7D 580003352 580005731 2379 False 269.5 322 84.9155 2093 2410 2 chr7D.!!$F1 317
6 TraesCS6B01G200600 chr7B 646369018 646371225 2207 False 263.5 303 84.7180 2094 2410 2 chr7B.!!$F1 316

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
647 681 0.036306 GTCCGTCCTTCCAACCATGT 59.964 55.0 0.0 0.0 0.00 3.21 F
670 704 0.303493 TCTGTTTGCTTCGTTGCGTC 59.697 50.0 0.0 0.0 35.36 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1635 1748 1.111277 GGGGACACAAAAAGCACAGT 58.889 50.0 0.00 0.0 0.0 3.55 R
2322 2437 1.120530 CACCGGGTACTAGAATGCCT 58.879 55.0 6.32 0.0 0.0 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 3.117745 TCAGATGTGGGAGGTGATGAAT 58.882 45.455 0.00 0.00 0.00 2.57
52 53 1.838112 TGTGGGAGGTGATGAATTGC 58.162 50.000 0.00 0.00 0.00 3.56
88 89 4.093850 CACAACATGATCATTGAGAGCGAA 59.906 41.667 14.50 0.00 34.70 4.70
101 102 0.320771 GAGCGAACAGGAAGAGCCAA 60.321 55.000 0.00 0.00 40.02 4.52
132 133 3.889815 CTGAACCATATTTCAGGCAGGA 58.110 45.455 8.67 0.00 46.02 3.86
135 136 3.131709 ACCATATTTCAGGCAGGATCG 57.868 47.619 0.00 0.00 0.00 3.69
161 162 3.244875 TGCAACTGTTGATCACCAGGTAT 60.245 43.478 22.52 7.32 32.90 2.73
167 168 1.199615 TGATCACCAGGTATCGGCAA 58.800 50.000 0.00 0.00 0.00 4.52
177 178 1.152984 TATCGGCAACATGGGCTGG 60.153 57.895 17.25 8.19 38.20 4.85
202 203 3.643320 TCCTCAATATGCGTCAGGAGATT 59.357 43.478 0.00 0.00 29.61 2.40
230 231 2.224606 CACAGGTGCATCAAGAACTGT 58.775 47.619 0.00 0.00 39.53 3.55
239 240 3.372206 GCATCAAGAACTGTAGCACGATT 59.628 43.478 0.00 0.00 0.00 3.34
247 248 2.224426 ACTGTAGCACGATTTGGTGGAA 60.224 45.455 0.00 0.00 38.36 3.53
286 287 3.447918 GGCAACGCCTAGTATGAAGTA 57.552 47.619 0.00 0.00 46.69 2.24
322 324 9.722056 ATCTTCAAATTATGAGCATTTTACGTC 57.278 29.630 0.00 0.00 39.77 4.34
360 366 7.381766 TGTATTGATTTCTGTGATGAAGTGG 57.618 36.000 0.00 0.00 0.00 4.00
408 414 0.871722 CCGAAGTGTGCCGAATTTGA 59.128 50.000 0.00 0.00 0.00 2.69
412 418 3.548014 CGAAGTGTGCCGAATTTGAGTTT 60.548 43.478 0.00 0.00 0.00 2.66
430 457 4.483243 GAAATCGGCGGCTGGGGA 62.483 66.667 7.21 0.00 0.00 4.81
431 458 3.987954 GAAATCGGCGGCTGGGGAA 62.988 63.158 7.21 0.00 0.00 3.97
442 471 0.471022 GCTGGGGAAAAACTTGGGGA 60.471 55.000 0.00 0.00 0.00 4.81
443 472 1.338107 CTGGGGAAAAACTTGGGGAC 58.662 55.000 0.00 0.00 0.00 4.46
477 510 2.801859 CCCCCACGGCGAAAATATT 58.198 52.632 16.62 0.00 0.00 1.28
493 526 1.990160 TATTGCCGGTTAGCCCCCAG 61.990 60.000 1.90 0.00 0.00 4.45
514 547 3.596362 GGCACTATTTCAAGCCCCT 57.404 52.632 0.00 0.00 41.25 4.79
516 550 1.340991 GGCACTATTTCAAGCCCCTGA 60.341 52.381 0.00 0.00 41.25 3.86
517 551 2.446435 GCACTATTTCAAGCCCCTGAA 58.554 47.619 0.00 0.00 33.48 3.02
544 578 1.149401 GGCTGGAGATGCCCTAACC 59.851 63.158 0.00 0.00 44.32 2.85
545 579 1.227674 GCTGGAGATGCCCTAACCG 60.228 63.158 0.00 0.00 34.97 4.44
546 580 1.972660 GCTGGAGATGCCCTAACCGT 61.973 60.000 0.00 0.00 34.97 4.83
547 581 0.179073 CTGGAGATGCCCTAACCGTG 60.179 60.000 0.00 0.00 34.97 4.94
548 582 0.616395 TGGAGATGCCCTAACCGTGA 60.616 55.000 0.00 0.00 34.97 4.35
549 583 0.105039 GGAGATGCCCTAACCGTGAG 59.895 60.000 0.00 0.00 0.00 3.51
550 584 1.112113 GAGATGCCCTAACCGTGAGA 58.888 55.000 0.00 0.00 0.00 3.27
551 585 1.067821 GAGATGCCCTAACCGTGAGAG 59.932 57.143 0.00 0.00 0.00 3.20
552 586 0.105039 GATGCCCTAACCGTGAGAGG 59.895 60.000 0.00 0.00 37.30 3.69
553 587 0.325296 ATGCCCTAACCGTGAGAGGA 60.325 55.000 0.00 0.00 31.45 3.71
554 588 0.543410 TGCCCTAACCGTGAGAGGAA 60.543 55.000 0.00 0.00 31.45 3.36
555 589 0.611714 GCCCTAACCGTGAGAGGAAA 59.388 55.000 0.00 0.00 31.45 3.13
556 590 1.002773 GCCCTAACCGTGAGAGGAAAA 59.997 52.381 0.00 0.00 31.45 2.29
557 591 2.696506 CCCTAACCGTGAGAGGAAAAC 58.303 52.381 0.00 0.00 31.45 2.43
558 592 2.614734 CCCTAACCGTGAGAGGAAAACC 60.615 54.545 0.00 0.00 31.45 3.27
559 593 2.302157 CCTAACCGTGAGAGGAAAACCT 59.698 50.000 0.00 0.00 31.45 3.50
560 594 3.244457 CCTAACCGTGAGAGGAAAACCTT 60.244 47.826 0.00 0.00 31.45 3.50
561 595 2.256117 ACCGTGAGAGGAAAACCTTG 57.744 50.000 0.00 0.00 34.73 3.61
562 596 1.766496 ACCGTGAGAGGAAAACCTTGA 59.234 47.619 0.00 0.00 34.73 3.02
563 597 2.143925 CCGTGAGAGGAAAACCTTGAC 58.856 52.381 0.00 0.00 0.00 3.18
564 598 2.143925 CGTGAGAGGAAAACCTTGACC 58.856 52.381 0.00 0.00 0.00 4.02
565 599 2.224305 CGTGAGAGGAAAACCTTGACCT 60.224 50.000 0.00 0.00 35.29 3.85
566 600 3.744530 CGTGAGAGGAAAACCTTGACCTT 60.745 47.826 0.00 0.00 32.53 3.50
567 601 4.207955 GTGAGAGGAAAACCTTGACCTTT 58.792 43.478 0.00 0.00 32.53 3.11
568 602 4.036852 GTGAGAGGAAAACCTTGACCTTTG 59.963 45.833 0.00 0.00 32.53 2.77
569 603 4.080015 TGAGAGGAAAACCTTGACCTTTGA 60.080 41.667 0.00 0.00 32.53 2.69
570 604 5.066913 AGAGGAAAACCTTGACCTTTGAT 57.933 39.130 0.00 0.00 32.53 2.57
571 605 4.829492 AGAGGAAAACCTTGACCTTTGATG 59.171 41.667 0.00 0.00 32.53 3.07
572 606 3.897505 AGGAAAACCTTGACCTTTGATGG 59.102 43.478 0.00 0.00 0.00 3.51
573 607 3.554960 GGAAAACCTTGACCTTTGATGGC 60.555 47.826 0.00 0.00 0.00 4.40
574 608 1.247567 AACCTTGACCTTTGATGGCG 58.752 50.000 0.00 0.00 0.00 5.69
575 609 1.244019 ACCTTGACCTTTGATGGCGC 61.244 55.000 0.00 0.00 0.00 6.53
576 610 1.243342 CCTTGACCTTTGATGGCGCA 61.243 55.000 10.83 0.00 0.00 6.09
577 611 0.813184 CTTGACCTTTGATGGCGCAT 59.187 50.000 10.83 0.00 0.00 4.73
578 612 1.203052 CTTGACCTTTGATGGCGCATT 59.797 47.619 10.83 0.00 0.00 3.56
579 613 0.810648 TGACCTTTGATGGCGCATTC 59.189 50.000 10.83 5.71 0.00 2.67
580 614 0.810648 GACCTTTGATGGCGCATTCA 59.189 50.000 10.83 8.77 0.00 2.57
581 615 0.527565 ACCTTTGATGGCGCATTCAC 59.472 50.000 10.83 0.00 0.00 3.18
582 616 0.523968 CCTTTGATGGCGCATTCACG 60.524 55.000 10.83 5.17 0.00 4.35
583 617 0.168788 CTTTGATGGCGCATTCACGT 59.831 50.000 10.83 0.00 34.88 4.49
584 618 0.595588 TTTGATGGCGCATTCACGTT 59.404 45.000 10.83 0.00 34.88 3.99
585 619 0.167908 TTGATGGCGCATTCACGTTC 59.832 50.000 10.83 0.00 34.88 3.95
586 620 1.062525 GATGGCGCATTCACGTTCC 59.937 57.895 10.83 0.00 34.88 3.62
587 621 1.643868 GATGGCGCATTCACGTTCCA 61.644 55.000 10.83 0.00 34.88 3.53
588 622 1.031571 ATGGCGCATTCACGTTCCAT 61.032 50.000 10.83 0.00 33.00 3.41
589 623 0.391793 TGGCGCATTCACGTTCCATA 60.392 50.000 10.83 0.00 34.88 2.74
590 624 0.730265 GGCGCATTCACGTTCCATAA 59.270 50.000 10.83 0.00 34.88 1.90
591 625 1.333619 GGCGCATTCACGTTCCATAAT 59.666 47.619 10.83 0.00 34.88 1.28
592 626 2.223479 GGCGCATTCACGTTCCATAATT 60.223 45.455 10.83 0.00 34.88 1.40
593 627 3.434637 GCGCATTCACGTTCCATAATTT 58.565 40.909 0.30 0.00 34.88 1.82
594 628 4.496673 GGCGCATTCACGTTCCATAATTTA 60.497 41.667 10.83 0.00 34.88 1.40
595 629 4.436523 GCGCATTCACGTTCCATAATTTAC 59.563 41.667 0.30 0.00 34.88 2.01
596 630 5.729454 GCGCATTCACGTTCCATAATTTACT 60.729 40.000 0.30 0.00 34.88 2.24
597 631 5.901884 CGCATTCACGTTCCATAATTTACTC 59.098 40.000 0.00 0.00 0.00 2.59
598 632 6.199393 GCATTCACGTTCCATAATTTACTCC 58.801 40.000 0.00 0.00 0.00 3.85
599 633 6.183360 GCATTCACGTTCCATAATTTACTCCA 60.183 38.462 0.00 0.00 0.00 3.86
600 634 7.468631 GCATTCACGTTCCATAATTTACTCCAT 60.469 37.037 0.00 0.00 0.00 3.41
601 635 6.918892 TCACGTTCCATAATTTACTCCATG 57.081 37.500 0.00 0.00 0.00 3.66
602 636 6.645306 TCACGTTCCATAATTTACTCCATGA 58.355 36.000 0.00 0.00 0.00 3.07
603 637 6.537301 TCACGTTCCATAATTTACTCCATGAC 59.463 38.462 0.00 0.00 0.00 3.06
604 638 6.538742 CACGTTCCATAATTTACTCCATGACT 59.461 38.462 0.00 0.00 0.00 3.41
605 639 7.065803 CACGTTCCATAATTTACTCCATGACTT 59.934 37.037 0.00 0.00 0.00 3.01
606 640 7.280205 ACGTTCCATAATTTACTCCATGACTTC 59.720 37.037 0.00 0.00 0.00 3.01
607 641 7.495934 CGTTCCATAATTTACTCCATGACTTCT 59.504 37.037 0.00 0.00 0.00 2.85
608 642 9.178758 GTTCCATAATTTACTCCATGACTTCTT 57.821 33.333 0.00 0.00 0.00 2.52
609 643 8.964476 TCCATAATTTACTCCATGACTTCTTC 57.036 34.615 0.00 0.00 0.00 2.87
610 644 8.772250 TCCATAATTTACTCCATGACTTCTTCT 58.228 33.333 0.00 0.00 0.00 2.85
611 645 9.050601 CCATAATTTACTCCATGACTTCTTCTC 57.949 37.037 0.00 0.00 0.00 2.87
612 646 9.050601 CATAATTTACTCCATGACTTCTTCTCC 57.949 37.037 0.00 0.00 0.00 3.71
613 647 5.422214 TTTACTCCATGACTTCTTCTCCC 57.578 43.478 0.00 0.00 0.00 4.30
614 648 3.197927 ACTCCATGACTTCTTCTCCCT 57.802 47.619 0.00 0.00 0.00 4.20
615 649 3.525862 ACTCCATGACTTCTTCTCCCTT 58.474 45.455 0.00 0.00 0.00 3.95
616 650 3.517500 ACTCCATGACTTCTTCTCCCTTC 59.482 47.826 0.00 0.00 0.00 3.46
617 651 2.497675 TCCATGACTTCTTCTCCCTTCG 59.502 50.000 0.00 0.00 0.00 3.79
618 652 2.497675 CCATGACTTCTTCTCCCTTCGA 59.502 50.000 0.00 0.00 0.00 3.71
619 653 3.133721 CCATGACTTCTTCTCCCTTCGAT 59.866 47.826 0.00 0.00 0.00 3.59
620 654 4.383552 CCATGACTTCTTCTCCCTTCGATT 60.384 45.833 0.00 0.00 0.00 3.34
621 655 5.163405 CCATGACTTCTTCTCCCTTCGATTA 60.163 44.000 0.00 0.00 0.00 1.75
622 656 6.463614 CCATGACTTCTTCTCCCTTCGATTAT 60.464 42.308 0.00 0.00 0.00 1.28
623 657 6.150396 TGACTTCTTCTCCCTTCGATTATC 57.850 41.667 0.00 0.00 0.00 1.75
624 658 5.894393 TGACTTCTTCTCCCTTCGATTATCT 59.106 40.000 0.00 0.00 0.00 1.98
625 659 6.039941 TGACTTCTTCTCCCTTCGATTATCTC 59.960 42.308 0.00 0.00 0.00 2.75
626 660 5.894393 ACTTCTTCTCCCTTCGATTATCTCA 59.106 40.000 0.00 0.00 0.00 3.27
627 661 6.381420 ACTTCTTCTCCCTTCGATTATCTCAA 59.619 38.462 0.00 0.00 0.00 3.02
628 662 6.398234 TCTTCTCCCTTCGATTATCTCAAG 57.602 41.667 0.00 0.00 0.00 3.02
629 663 5.894393 TCTTCTCCCTTCGATTATCTCAAGT 59.106 40.000 0.00 0.00 0.00 3.16
630 664 5.776173 TCTCCCTTCGATTATCTCAAGTC 57.224 43.478 0.00 0.00 0.00 3.01
631 665 4.585162 TCTCCCTTCGATTATCTCAAGTCC 59.415 45.833 0.00 0.00 0.00 3.85
632 666 3.318275 TCCCTTCGATTATCTCAAGTCCG 59.682 47.826 0.00 0.00 0.00 4.79
633 667 3.068307 CCCTTCGATTATCTCAAGTCCGT 59.932 47.826 0.00 0.00 0.00 4.69
634 668 4.291783 CCTTCGATTATCTCAAGTCCGTC 58.708 47.826 0.00 0.00 0.00 4.79
635 669 3.984508 TCGATTATCTCAAGTCCGTCC 57.015 47.619 0.00 0.00 0.00 4.79
636 670 3.552875 TCGATTATCTCAAGTCCGTCCT 58.447 45.455 0.00 0.00 0.00 3.85
637 671 3.952323 TCGATTATCTCAAGTCCGTCCTT 59.048 43.478 0.00 0.00 0.00 3.36
638 672 4.036498 TCGATTATCTCAAGTCCGTCCTTC 59.964 45.833 0.00 0.00 0.00 3.46
639 673 4.623002 GATTATCTCAAGTCCGTCCTTCC 58.377 47.826 0.00 0.00 0.00 3.46
640 674 1.938585 ATCTCAAGTCCGTCCTTCCA 58.061 50.000 0.00 0.00 0.00 3.53
641 675 1.712056 TCTCAAGTCCGTCCTTCCAA 58.288 50.000 0.00 0.00 0.00 3.53
642 676 1.343465 TCTCAAGTCCGTCCTTCCAAC 59.657 52.381 0.00 0.00 0.00 3.77
643 677 0.395312 TCAAGTCCGTCCTTCCAACC 59.605 55.000 0.00 0.00 0.00 3.77
644 678 0.107831 CAAGTCCGTCCTTCCAACCA 59.892 55.000 0.00 0.00 0.00 3.67
645 679 1.064825 AAGTCCGTCCTTCCAACCAT 58.935 50.000 0.00 0.00 0.00 3.55
646 680 0.324943 AGTCCGTCCTTCCAACCATG 59.675 55.000 0.00 0.00 0.00 3.66
647 681 0.036306 GTCCGTCCTTCCAACCATGT 59.964 55.000 0.00 0.00 0.00 3.21
648 682 0.768622 TCCGTCCTTCCAACCATGTT 59.231 50.000 0.00 0.00 0.00 2.71
649 683 1.144093 TCCGTCCTTCCAACCATGTTT 59.856 47.619 0.00 0.00 0.00 2.83
650 684 1.539827 CCGTCCTTCCAACCATGTTTC 59.460 52.381 0.00 0.00 0.00 2.78
651 685 2.504367 CGTCCTTCCAACCATGTTTCT 58.496 47.619 0.00 0.00 0.00 2.52
652 686 2.484264 CGTCCTTCCAACCATGTTTCTC 59.516 50.000 0.00 0.00 0.00 2.87
653 687 3.756117 GTCCTTCCAACCATGTTTCTCT 58.244 45.455 0.00 0.00 0.00 3.10
654 688 3.503748 GTCCTTCCAACCATGTTTCTCTG 59.496 47.826 0.00 0.00 0.00 3.35
655 689 3.138283 TCCTTCCAACCATGTTTCTCTGT 59.862 43.478 0.00 0.00 0.00 3.41
656 690 3.891366 CCTTCCAACCATGTTTCTCTGTT 59.109 43.478 0.00 0.00 0.00 3.16
657 691 4.342092 CCTTCCAACCATGTTTCTCTGTTT 59.658 41.667 0.00 0.00 0.00 2.83
658 692 4.916983 TCCAACCATGTTTCTCTGTTTG 57.083 40.909 0.00 0.00 0.00 2.93
659 693 3.068024 TCCAACCATGTTTCTCTGTTTGC 59.932 43.478 0.00 0.00 0.00 3.68
660 694 3.068590 CCAACCATGTTTCTCTGTTTGCT 59.931 43.478 0.00 0.00 0.00 3.91
661 695 4.441913 CCAACCATGTTTCTCTGTTTGCTT 60.442 41.667 0.00 0.00 0.00 3.91
662 696 4.574599 ACCATGTTTCTCTGTTTGCTTC 57.425 40.909 0.00 0.00 0.00 3.86
663 697 3.003689 ACCATGTTTCTCTGTTTGCTTCG 59.996 43.478 0.00 0.00 0.00 3.79
664 698 3.003689 CCATGTTTCTCTGTTTGCTTCGT 59.996 43.478 0.00 0.00 0.00 3.85
665 699 4.498009 CCATGTTTCTCTGTTTGCTTCGTT 60.498 41.667 0.00 0.00 0.00 3.85
666 700 4.014847 TGTTTCTCTGTTTGCTTCGTTG 57.985 40.909 0.00 0.00 0.00 4.10
667 701 2.755836 TTCTCTGTTTGCTTCGTTGC 57.244 45.000 0.00 0.00 0.00 4.17
668 702 0.581529 TCTCTGTTTGCTTCGTTGCG 59.418 50.000 0.00 0.00 35.36 4.85
669 703 0.304705 CTCTGTTTGCTTCGTTGCGT 59.695 50.000 0.00 0.00 35.36 5.24
670 704 0.303493 TCTGTTTGCTTCGTTGCGTC 59.697 50.000 0.00 0.00 35.36 5.19
671 705 0.304705 CTGTTTGCTTCGTTGCGTCT 59.695 50.000 0.00 0.00 35.36 4.18
672 706 1.525197 CTGTTTGCTTCGTTGCGTCTA 59.475 47.619 0.00 0.00 35.36 2.59
673 707 1.525197 TGTTTGCTTCGTTGCGTCTAG 59.475 47.619 0.00 0.00 35.36 2.43
686 720 2.520979 GCGTCTAGCATTCTATAGGCG 58.479 52.381 0.00 2.10 46.94 5.52
687 721 2.732597 GCGTCTAGCATTCTATAGGCGG 60.733 54.545 8.13 0.00 44.97 6.13
688 722 2.747989 CGTCTAGCATTCTATAGGCGGA 59.252 50.000 0.00 0.00 42.02 5.54
689 723 3.181505 CGTCTAGCATTCTATAGGCGGAG 60.182 52.174 0.00 0.02 42.02 4.63
706 740 4.349663 CGGAGCGGACAATAAAATTTCA 57.650 40.909 0.00 0.00 0.00 2.69
707 741 4.920376 CGGAGCGGACAATAAAATTTCAT 58.080 39.130 0.00 0.00 0.00 2.57
708 742 5.339990 CGGAGCGGACAATAAAATTTCATT 58.660 37.500 0.00 0.00 0.00 2.57
709 743 5.804979 CGGAGCGGACAATAAAATTTCATTT 59.195 36.000 0.00 0.00 0.00 2.32
710 744 6.310224 CGGAGCGGACAATAAAATTTCATTTT 59.690 34.615 0.00 0.44 44.13 1.82
711 745 7.455447 GGAGCGGACAATAAAATTTCATTTTG 58.545 34.615 4.96 0.00 42.08 2.44
712 746 6.830736 AGCGGACAATAAAATTTCATTTTGC 58.169 32.000 4.96 0.00 42.08 3.68
713 747 6.020984 GCGGACAATAAAATTTCATTTTGCC 58.979 36.000 4.96 0.22 42.08 4.52
714 748 6.128309 GCGGACAATAAAATTTCATTTTGCCT 60.128 34.615 4.96 0.00 42.08 4.75
715 749 7.235777 CGGACAATAAAATTTCATTTTGCCTG 58.764 34.615 4.96 2.86 42.08 4.85
716 750 7.117523 CGGACAATAAAATTTCATTTTGCCTGA 59.882 33.333 4.96 0.00 42.08 3.86
717 751 8.949177 GGACAATAAAATTTCATTTTGCCTGAT 58.051 29.630 4.96 0.00 42.08 2.90
718 752 9.763465 GACAATAAAATTTCATTTTGCCTGATG 57.237 29.630 4.96 0.00 42.08 3.07
736 770 1.055040 TGACCCCAAGCCCAAAAATG 58.945 50.000 0.00 0.00 0.00 2.32
737 771 1.347062 GACCCCAAGCCCAAAAATGA 58.653 50.000 0.00 0.00 0.00 2.57
738 772 1.001974 GACCCCAAGCCCAAAAATGAC 59.998 52.381 0.00 0.00 0.00 3.06
748 782 3.252458 GCCCAAAAATGACGTAACTGTCT 59.748 43.478 0.00 0.00 39.64 3.41
759 793 4.817517 ACGTAACTGTCTCATACCCAAAG 58.182 43.478 0.00 0.00 0.00 2.77
805 839 6.449830 AGTAATGGGTAGGAAAACAGTTCT 57.550 37.500 0.00 0.00 0.00 3.01
850 884 4.402474 TGATGAGCTTTCCTCGATGAGTTA 59.598 41.667 0.00 0.00 43.82 2.24
868 902 5.163405 TGAGTTAACTGACTTCTGCTGAGTT 60.163 40.000 14.14 0.00 0.00 3.01
908 942 3.141398 TGTGCTGAAACAGGCTTCTAAG 58.859 45.455 0.00 0.00 31.21 2.18
1026 1128 1.599047 GCAGGGTAAGAGCAGCTCA 59.401 57.895 24.64 1.24 32.06 4.26
1158 1260 2.232696 TGTTCTTGTGCAGCGGATAGTA 59.767 45.455 0.00 0.00 0.00 1.82
1197 1299 2.586792 GCGGTCATGGAGGAGCTT 59.413 61.111 0.00 0.00 33.24 3.74
1294 1396 0.402861 ATAACCCCCATCCACCCGAT 60.403 55.000 0.00 0.00 0.00 4.18
1369 1471 1.541588 GCCAGTGAGGGATGTTTGAAC 59.458 52.381 0.00 0.00 38.09 3.18
1380 1482 4.142038 GGATGTTTGAACCTGTAACCTGT 58.858 43.478 0.00 0.00 0.00 4.00
1420 1522 3.243670 TGTGCAATTTCGAAATGAGCCAA 60.244 39.130 30.01 21.22 32.49 4.52
1426 1528 5.649782 ATTTCGAAATGAGCCAACAGAAT 57.350 34.783 22.16 0.00 0.00 2.40
1427 1529 4.424061 TTCGAAATGAGCCAACAGAATG 57.576 40.909 0.00 0.00 46.00 2.67
1428 1530 3.673902 TCGAAATGAGCCAACAGAATGA 58.326 40.909 0.00 0.00 39.69 2.57
1429 1531 4.071423 TCGAAATGAGCCAACAGAATGAA 58.929 39.130 0.00 0.00 39.69 2.57
1430 1532 4.154737 TCGAAATGAGCCAACAGAATGAAG 59.845 41.667 0.00 0.00 39.69 3.02
1431 1533 3.863142 AATGAGCCAACAGAATGAAGC 57.137 42.857 0.00 0.00 39.69 3.86
1432 1534 1.538047 TGAGCCAACAGAATGAAGCC 58.462 50.000 0.00 0.00 39.69 4.35
1433 1535 1.202915 TGAGCCAACAGAATGAAGCCA 60.203 47.619 0.00 0.00 39.69 4.75
1434 1536 2.097825 GAGCCAACAGAATGAAGCCAT 58.902 47.619 0.00 0.00 39.69 4.40
1435 1537 1.822990 AGCCAACAGAATGAAGCCATG 59.177 47.619 0.00 0.00 39.69 3.66
1635 1748 7.452880 AGACATAGTGCAAGCTGAAATTTTA 57.547 32.000 0.00 0.00 0.00 1.52
1636 1749 7.308435 AGACATAGTGCAAGCTGAAATTTTAC 58.692 34.615 0.00 0.00 0.00 2.01
1637 1750 7.175641 AGACATAGTGCAAGCTGAAATTTTACT 59.824 33.333 0.00 0.00 0.00 2.24
1638 1751 7.086376 ACATAGTGCAAGCTGAAATTTTACTG 58.914 34.615 0.00 0.00 0.00 2.74
1639 1752 5.520376 AGTGCAAGCTGAAATTTTACTGT 57.480 34.783 0.00 0.00 0.00 3.55
1640 1753 5.284079 AGTGCAAGCTGAAATTTTACTGTG 58.716 37.500 0.00 0.00 0.00 3.66
1641 1754 4.050553 TGCAAGCTGAAATTTTACTGTGC 58.949 39.130 9.07 9.07 0.00 4.57
1642 1755 4.202141 TGCAAGCTGAAATTTTACTGTGCT 60.202 37.500 14.29 4.37 0.00 4.40
1644 1757 5.234972 GCAAGCTGAAATTTTACTGTGCTTT 59.765 36.000 4.93 0.00 37.41 3.51
1645 1758 6.238184 GCAAGCTGAAATTTTACTGTGCTTTT 60.238 34.615 4.93 0.00 37.41 2.27
1646 1759 7.677041 GCAAGCTGAAATTTTACTGTGCTTTTT 60.677 33.333 4.93 0.00 37.41 1.94
1647 1760 7.237920 AGCTGAAATTTTACTGTGCTTTTTG 57.762 32.000 0.00 0.00 0.00 2.44
1648 1761 6.818142 AGCTGAAATTTTACTGTGCTTTTTGT 59.182 30.769 0.00 0.00 0.00 2.83
1649 1762 6.901357 GCTGAAATTTTACTGTGCTTTTTGTG 59.099 34.615 0.00 0.00 0.00 3.33
1650 1763 7.412891 GCTGAAATTTTACTGTGCTTTTTGTGT 60.413 33.333 0.00 0.00 0.00 3.72
1651 1764 7.958674 TGAAATTTTACTGTGCTTTTTGTGTC 58.041 30.769 0.00 0.00 0.00 3.67
1652 1765 6.902224 AATTTTACTGTGCTTTTTGTGTCC 57.098 33.333 0.00 0.00 0.00 4.02
1653 1766 4.379339 TTTACTGTGCTTTTTGTGTCCC 57.621 40.909 0.00 0.00 0.00 4.46
1654 1767 1.111277 ACTGTGCTTTTTGTGTCCCC 58.889 50.000 0.00 0.00 0.00 4.81
1655 1768 1.341976 ACTGTGCTTTTTGTGTCCCCT 60.342 47.619 0.00 0.00 0.00 4.79
1656 1769 2.092103 ACTGTGCTTTTTGTGTCCCCTA 60.092 45.455 0.00 0.00 0.00 3.53
1657 1770 3.157087 CTGTGCTTTTTGTGTCCCCTAT 58.843 45.455 0.00 0.00 0.00 2.57
1658 1771 4.202524 ACTGTGCTTTTTGTGTCCCCTATA 60.203 41.667 0.00 0.00 0.00 1.31
1659 1772 4.929479 TGTGCTTTTTGTGTCCCCTATAT 58.071 39.130 0.00 0.00 0.00 0.86
1660 1773 5.329399 TGTGCTTTTTGTGTCCCCTATATT 58.671 37.500 0.00 0.00 0.00 1.28
1661 1774 5.777732 TGTGCTTTTTGTGTCCCCTATATTT 59.222 36.000 0.00 0.00 0.00 1.40
1662 1775 6.948886 TGTGCTTTTTGTGTCCCCTATATTTA 59.051 34.615 0.00 0.00 0.00 1.40
1743 1856 5.535753 ACTTTTAGTTCCAAGCAAAGCAT 57.464 34.783 0.00 0.00 0.00 3.79
1750 1863 0.388907 CCAAGCAAAGCATGGTTCCG 60.389 55.000 11.16 6.63 46.45 4.30
1867 1981 4.262079 GGTAATACGCTATCTGCCTGTCTT 60.262 45.833 0.00 0.00 38.78 3.01
1916 2030 2.632512 AGGATTTGTTGGCAACCGATTT 59.367 40.909 26.31 7.87 33.82 2.17
2322 2437 9.649167 GTTCTAATGGAGTTTAGCTAGTTAACA 57.351 33.333 8.61 1.75 0.00 2.41
2454 2573 9.796120 TGTTTGTTTAACTTGAGGTCATTAAAG 57.204 29.630 0.00 0.00 37.64 1.85
2469 2588 8.943085 AGGTCATTAAAGGATGTAGATGAGAAT 58.057 33.333 0.00 0.00 0.00 2.40
2663 2784 5.985530 GCAAATTGCAAAGGAGTTCTAACTT 59.014 36.000 13.73 0.00 44.26 2.66
2664 2785 6.074142 GCAAATTGCAAAGGAGTTCTAACTTG 60.074 38.462 13.73 0.00 44.26 3.16
2678 2799 7.363431 AGTTCTAACTTGCAACAAGCTTATTC 58.637 34.615 0.00 0.00 45.94 1.75
2685 2806 6.041523 ACTTGCAACAAGCTTATTCCCTTAAA 59.958 34.615 0.00 0.00 45.94 1.52
2686 2807 6.024552 TGCAACAAGCTTATTCCCTTAAAG 57.975 37.500 0.00 0.00 45.94 1.85
2765 2886 2.489329 AGTTGTTGATTTCCATCGGCAG 59.511 45.455 0.00 0.00 31.08 4.85
2782 2903 1.359848 CAGCATAGTCCAACGGTCAC 58.640 55.000 0.00 0.00 0.00 3.67
2787 2908 0.538057 TAGTCCAACGGTCACTCGGT 60.538 55.000 0.00 0.00 0.00 4.69
2796 2918 1.248785 GGTCACTCGGTGCTGAGGTA 61.249 60.000 12.12 0.00 40.39 3.08
2820 2948 3.618507 GCCTCTGTATAAGCTATGCCAGG 60.619 52.174 0.00 0.00 0.00 4.45
2831 2959 2.936202 CTATGCCAGGCCATGTTTACT 58.064 47.619 9.64 0.00 0.00 2.24
2893 3021 6.206634 TGCTCTAACTGGGTTGACTATTTTTG 59.793 38.462 0.00 0.00 0.00 2.44
2894 3022 6.430000 GCTCTAACTGGGTTGACTATTTTTGA 59.570 38.462 0.00 0.00 0.00 2.69
2899 3051 8.528044 AACTGGGTTGACTATTTTTGAGTTTA 57.472 30.769 0.00 0.00 0.00 2.01
3002 3891 9.892130 CCAGACCAGAGAGTAGTTTAATTTAAT 57.108 33.333 0.00 0.00 0.00 1.40
3030 3919 9.666626 TTTTTGGTTTAAACATGTACTATGTCG 57.333 29.630 19.57 0.00 0.00 4.35
3084 4188 1.866601 GCCACCTTGTTGCATGTTTTC 59.133 47.619 0.00 0.00 0.00 2.29
3128 4375 4.027437 ACCTCTTAGTGATCCTCCTGTTC 58.973 47.826 0.00 0.00 0.00 3.18
3143 4390 7.405292 TCCTCCTGTTCTCAAATAAATGATGT 58.595 34.615 0.00 0.00 0.00 3.06
3147 4394 7.031372 CCTGTTCTCAAATAAATGATGTGGTG 58.969 38.462 0.00 0.00 0.00 4.17
3148 4395 6.923012 TGTTCTCAAATAAATGATGTGGTGG 58.077 36.000 0.00 0.00 0.00 4.61
3149 4396 6.071447 TGTTCTCAAATAAATGATGTGGTGGG 60.071 38.462 0.00 0.00 0.00 4.61
3150 4397 5.825532 TCTCAAATAAATGATGTGGTGGGA 58.174 37.500 0.00 0.00 0.00 4.37
3151 4398 5.652014 TCTCAAATAAATGATGTGGTGGGAC 59.348 40.000 0.00 0.00 0.00 4.46
3152 4399 5.579047 TCAAATAAATGATGTGGTGGGACT 58.421 37.500 0.00 0.00 0.00 3.85
3154 4401 6.828273 TCAAATAAATGATGTGGTGGGACTAG 59.172 38.462 0.00 0.00 0.00 2.57
3155 4402 3.652057 AAATGATGTGGTGGGACTAGG 57.348 47.619 0.00 0.00 0.00 3.02
3156 4403 1.511613 ATGATGTGGTGGGACTAGGG 58.488 55.000 0.00 0.00 0.00 3.53
3157 4404 0.118346 TGATGTGGTGGGACTAGGGT 59.882 55.000 0.00 0.00 0.00 4.34
3158 4405 1.286248 GATGTGGTGGGACTAGGGTT 58.714 55.000 0.00 0.00 0.00 4.11
3159 4406 1.209747 GATGTGGTGGGACTAGGGTTC 59.790 57.143 0.00 0.00 0.00 3.62
3160 4407 0.838987 TGTGGTGGGACTAGGGTTCC 60.839 60.000 0.00 0.00 41.51 3.62
3162 4409 1.095130 TGGTGGGACTAGGGTTCCTA 58.905 55.000 0.00 0.00 41.68 2.94
3163 4410 1.273438 TGGTGGGACTAGGGTTCCTAC 60.273 57.143 5.97 5.97 41.68 3.18
3164 4411 1.493861 GTGGGACTAGGGTTCCTACC 58.506 60.000 3.69 0.00 41.68 3.18
3167 4414 1.121378 GGACTAGGGTTCCTACCAGC 58.879 60.000 0.00 0.00 46.96 4.85
3169 4416 1.328430 ACTAGGGTTCCTACCAGCGC 61.328 60.000 0.00 0.00 46.96 5.92
3171 4418 1.327690 TAGGGTTCCTACCAGCGCAG 61.328 60.000 11.47 0.00 46.96 5.18
3172 4419 2.820037 GGTTCCTACCAGCGCAGC 60.820 66.667 11.47 0.00 46.59 5.25
3187 4434 3.198863 CGCAGCTACGTAGGTTATAGG 57.801 52.381 23.99 13.68 30.45 2.57
3188 4435 2.095364 CGCAGCTACGTAGGTTATAGGG 60.095 54.545 23.99 16.48 30.45 3.53
3191 4438 4.380655 GCAGCTACGTAGGTTATAGGGATG 60.381 50.000 23.99 10.95 30.45 3.51
3192 4439 5.008331 CAGCTACGTAGGTTATAGGGATGA 58.992 45.833 23.99 0.00 30.45 2.92
3193 4440 5.124138 CAGCTACGTAGGTTATAGGGATGAG 59.876 48.000 23.99 5.36 30.45 2.90
3196 4443 4.150359 ACGTAGGTTATAGGGATGAGGTG 58.850 47.826 0.00 0.00 0.00 4.00
3197 4444 3.510360 CGTAGGTTATAGGGATGAGGTGG 59.490 52.174 0.00 0.00 0.00 4.61
3200 4447 2.907042 GGTTATAGGGATGAGGTGGAGG 59.093 54.545 0.00 0.00 0.00 4.30
3202 4449 2.109229 ATAGGGATGAGGTGGAGGTG 57.891 55.000 0.00 0.00 0.00 4.00
3203 4450 0.031111 TAGGGATGAGGTGGAGGTGG 60.031 60.000 0.00 0.00 0.00 4.61
3204 4451 1.306997 GGGATGAGGTGGAGGTGGA 60.307 63.158 0.00 0.00 0.00 4.02
3205 4452 1.627297 GGGATGAGGTGGAGGTGGAC 61.627 65.000 0.00 0.00 0.00 4.02
3208 4455 0.972983 ATGAGGTGGAGGTGGACGAG 60.973 60.000 0.00 0.00 0.00 4.18
3209 4456 2.283966 AGGTGGAGGTGGACGAGG 60.284 66.667 0.00 0.00 0.00 4.63
3210 4457 3.391382 GGTGGAGGTGGACGAGGG 61.391 72.222 0.00 0.00 0.00 4.30
3211 4458 4.083862 GTGGAGGTGGACGAGGGC 62.084 72.222 0.00 0.00 0.00 5.19
3212 4459 4.316823 TGGAGGTGGACGAGGGCT 62.317 66.667 0.00 0.00 0.00 5.19
3213 4460 3.775654 GGAGGTGGACGAGGGCTG 61.776 72.222 0.00 0.00 0.00 4.85
3214 4461 3.775654 GAGGTGGACGAGGGCTGG 61.776 72.222 0.00 0.00 0.00 4.85
3216 4463 3.775654 GGTGGACGAGGGCTGGAG 61.776 72.222 0.00 0.00 0.00 3.86
3217 4464 4.459089 GTGGACGAGGGCTGGAGC 62.459 72.222 0.00 0.00 41.14 4.70
3256 4503 4.446413 CCGTCGCGGCTAGGGTTT 62.446 66.667 9.90 0.00 41.17 3.27
3257 4504 2.491152 CGTCGCGGCTAGGGTTTA 59.509 61.111 9.90 0.00 0.00 2.01
3258 4505 1.588139 CGTCGCGGCTAGGGTTTAG 60.588 63.158 9.90 0.00 0.00 1.85
3259 4506 1.227176 GTCGCGGCTAGGGTTTAGG 60.227 63.158 1.90 0.00 0.00 2.69
3261 4508 2.509422 GCGGCTAGGGTTTAGGGG 59.491 66.667 0.00 0.00 0.00 4.79
3263 4510 2.509422 GGCTAGGGTTTAGGGGCG 59.491 66.667 0.00 0.00 0.00 6.13
3264 4511 2.509422 GCTAGGGTTTAGGGGCGG 59.491 66.667 0.00 0.00 0.00 6.13
3265 4512 2.509422 CTAGGGTTTAGGGGCGGC 59.491 66.667 0.00 0.00 0.00 6.53
3266 4513 3.456105 CTAGGGTTTAGGGGCGGCG 62.456 68.421 0.51 0.51 0.00 6.46
3286 4533 4.643387 GGTTGGCTGGTGTCGGCT 62.643 66.667 0.00 0.00 44.44 5.52
3287 4534 2.345991 GTTGGCTGGTGTCGGCTA 59.654 61.111 0.00 0.00 44.44 3.93
3288 4535 1.741770 GTTGGCTGGTGTCGGCTAG 60.742 63.158 0.00 0.00 44.44 3.42
3289 4536 2.954684 TTGGCTGGTGTCGGCTAGG 61.955 63.158 0.00 0.00 44.44 3.02
3291 4538 3.391382 GCTGGTGTCGGCTAGGGT 61.391 66.667 0.00 0.00 41.88 4.34
3293 4540 1.218316 CTGGTGTCGGCTAGGGTTC 59.782 63.158 0.00 0.00 0.00 3.62
3294 4541 2.240162 CTGGTGTCGGCTAGGGTTCC 62.240 65.000 0.00 0.00 0.00 3.62
3295 4542 2.183555 GTGTCGGCTAGGGTTCCG 59.816 66.667 0.49 0.49 46.52 4.30
3296 4543 3.072468 TGTCGGCTAGGGTTCCGG 61.072 66.667 0.00 0.00 45.31 5.14
3297 4544 4.525949 GTCGGCTAGGGTTCCGGC 62.526 72.222 0.00 1.35 45.31 6.13
3298 4545 4.772231 TCGGCTAGGGTTCCGGCT 62.772 66.667 0.00 0.00 45.31 5.52
3299 4546 4.222847 CGGCTAGGGTTCCGGCTC 62.223 72.222 0.00 0.00 41.82 4.70
3302 4549 2.798364 GCTAGGGTTCCGGCTCCTC 61.798 68.421 12.29 4.77 32.46 3.71
3303 4550 1.381327 CTAGGGTTCCGGCTCCTCA 60.381 63.158 12.29 2.27 32.46 3.86
3304 4551 1.381327 TAGGGTTCCGGCTCCTCAG 60.381 63.158 12.29 0.00 32.46 3.35
3305 4552 2.873557 TAGGGTTCCGGCTCCTCAGG 62.874 65.000 12.29 0.00 32.46 3.86
3306 4553 3.787001 GGTTCCGGCTCCTCAGGG 61.787 72.222 0.00 0.00 0.00 4.45
3307 4554 2.683933 GTTCCGGCTCCTCAGGGA 60.684 66.667 0.00 0.00 39.70 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.742768 CAGGTCAGAGCGGGGTATC 59.257 63.158 0.00 0.00 0.00 2.24
49 50 1.677942 TGTGCAAGATGACACAGCAA 58.322 45.000 0.00 0.00 41.67 3.91
52 53 3.251487 TCATGTTGTGCAAGATGACACAG 59.749 43.478 17.21 0.00 46.65 3.66
88 89 2.887152 GTCAAACATTGGCTCTTCCTGT 59.113 45.455 0.00 0.00 35.26 4.00
101 102 7.523293 TGAAATATGGTTCAGTGTCAAACAT 57.477 32.000 1.22 1.22 32.56 2.71
132 133 3.187227 GTGATCAACAGTTGCAAGACGAT 59.813 43.478 8.58 0.00 0.00 3.73
135 136 2.618241 TGGTGATCAACAGTTGCAAGAC 59.382 45.455 10.05 2.76 0.00 3.01
167 168 1.792757 TTGAGGAAGCCAGCCCATGT 61.793 55.000 0.00 0.00 0.00 3.21
177 178 1.869767 CCTGACGCATATTGAGGAAGC 59.130 52.381 0.00 0.00 0.00 3.86
202 203 1.888436 GATGCACCTGTGGGTCTCGA 61.888 60.000 0.00 0.00 45.41 4.04
230 231 2.147958 GTGTTCCACCAAATCGTGCTA 58.852 47.619 0.00 0.00 32.10 3.49
247 248 1.561542 CCCTTGAGCCTTCATAGGTGT 59.438 52.381 0.00 0.00 44.00 4.16
296 298 9.722056 GACGTAAAATGCTCATAATTTGAAGAT 57.278 29.630 0.00 0.00 32.78 2.40
298 300 7.902917 TCGACGTAAAATGCTCATAATTTGAAG 59.097 33.333 0.00 0.00 32.78 3.02
302 304 7.748847 AGTTCGACGTAAAATGCTCATAATTT 58.251 30.769 0.00 0.00 0.00 1.82
316 318 9.961266 CAATACAAATCAAATAGTTCGACGTAA 57.039 29.630 0.00 0.00 0.00 3.18
318 320 8.246908 TCAATACAAATCAAATAGTTCGACGT 57.753 30.769 0.00 0.00 0.00 4.34
367 373 6.758886 TCGGCACAAAAATCAACAAAAACTAT 59.241 30.769 0.00 0.00 0.00 2.12
370 376 5.209944 TCGGCACAAAAATCAACAAAAAC 57.790 34.783 0.00 0.00 0.00 2.43
381 387 0.179124 GGCACACTTCGGCACAAAAA 60.179 50.000 0.00 0.00 0.00 1.94
382 388 1.435515 GGCACACTTCGGCACAAAA 59.564 52.632 0.00 0.00 0.00 2.44
408 414 1.586154 CCAGCCGCCGATTTCAAACT 61.586 55.000 0.00 0.00 0.00 2.66
412 418 4.794648 CCCCAGCCGCCGATTTCA 62.795 66.667 0.00 0.00 0.00 2.69
430 457 0.852155 TACCCGGTCCCCAAGTTTTT 59.148 50.000 0.00 0.00 0.00 1.94
431 458 0.402887 CTACCCGGTCCCCAAGTTTT 59.597 55.000 0.00 0.00 0.00 2.43
467 500 2.381589 GCTAACCGGCAATATTTTCGC 58.618 47.619 0.00 0.00 0.00 4.70
493 526 1.393603 GGGCTTGAAATAGTGCCTCC 58.606 55.000 0.00 0.00 44.36 4.30
495 528 1.002857 AGGGGCTTGAAATAGTGCCT 58.997 50.000 0.00 0.00 44.36 4.75
551 585 3.554960 GCCATCAAAGGTCAAGGTTTTCC 60.555 47.826 0.00 0.00 41.05 3.13
552 586 3.653344 GCCATCAAAGGTCAAGGTTTTC 58.347 45.455 0.00 0.00 0.00 2.29
553 587 2.035832 CGCCATCAAAGGTCAAGGTTTT 59.964 45.455 0.00 0.00 0.00 2.43
554 588 1.613437 CGCCATCAAAGGTCAAGGTTT 59.387 47.619 0.00 0.00 0.00 3.27
555 589 1.247567 CGCCATCAAAGGTCAAGGTT 58.752 50.000 0.00 0.00 0.00 3.50
556 590 1.244019 GCGCCATCAAAGGTCAAGGT 61.244 55.000 0.00 0.00 0.00 3.50
557 591 1.243342 TGCGCCATCAAAGGTCAAGG 61.243 55.000 4.18 0.00 0.00 3.61
558 592 0.813184 ATGCGCCATCAAAGGTCAAG 59.187 50.000 4.18 0.00 0.00 3.02
559 593 1.202114 GAATGCGCCATCAAAGGTCAA 59.798 47.619 4.18 0.00 0.00 3.18
560 594 0.810648 GAATGCGCCATCAAAGGTCA 59.189 50.000 4.18 0.00 0.00 4.02
561 595 0.810648 TGAATGCGCCATCAAAGGTC 59.189 50.000 4.18 0.00 0.00 3.85
562 596 0.527565 GTGAATGCGCCATCAAAGGT 59.472 50.000 13.05 0.00 0.00 3.50
563 597 0.523968 CGTGAATGCGCCATCAAAGG 60.524 55.000 13.05 3.67 0.00 3.11
564 598 0.168788 ACGTGAATGCGCCATCAAAG 59.831 50.000 13.05 12.34 34.88 2.77
565 599 0.595588 AACGTGAATGCGCCATCAAA 59.404 45.000 13.05 0.00 34.88 2.69
566 600 0.167908 GAACGTGAATGCGCCATCAA 59.832 50.000 13.05 0.00 34.88 2.57
567 601 1.643868 GGAACGTGAATGCGCCATCA 61.644 55.000 4.18 6.53 34.88 3.07
568 602 1.062525 GGAACGTGAATGCGCCATC 59.937 57.895 4.18 3.34 34.88 3.51
569 603 1.031571 ATGGAACGTGAATGCGCCAT 61.032 50.000 4.18 0.00 32.56 4.40
570 604 0.391793 TATGGAACGTGAATGCGCCA 60.392 50.000 4.18 0.00 34.88 5.69
571 605 0.730265 TTATGGAACGTGAATGCGCC 59.270 50.000 4.18 0.00 34.88 6.53
572 606 2.755836 ATTATGGAACGTGAATGCGC 57.244 45.000 0.00 0.00 34.88 6.09
573 607 5.806286 AGTAAATTATGGAACGTGAATGCG 58.194 37.500 0.00 0.00 37.94 4.73
574 608 6.183360 TGGAGTAAATTATGGAACGTGAATGC 60.183 38.462 0.00 0.00 0.00 3.56
575 609 7.315247 TGGAGTAAATTATGGAACGTGAATG 57.685 36.000 0.00 0.00 0.00 2.67
576 610 7.773224 TCATGGAGTAAATTATGGAACGTGAAT 59.227 33.333 0.00 0.00 0.00 2.57
577 611 7.065324 GTCATGGAGTAAATTATGGAACGTGAA 59.935 37.037 0.00 0.00 0.00 3.18
578 612 6.537301 GTCATGGAGTAAATTATGGAACGTGA 59.463 38.462 0.00 0.00 0.00 4.35
579 613 6.538742 AGTCATGGAGTAAATTATGGAACGTG 59.461 38.462 0.00 0.00 0.00 4.49
580 614 6.650120 AGTCATGGAGTAAATTATGGAACGT 58.350 36.000 0.00 0.00 0.00 3.99
581 615 7.495934 AGAAGTCATGGAGTAAATTATGGAACG 59.504 37.037 0.00 0.00 0.00 3.95
582 616 8.738645 AGAAGTCATGGAGTAAATTATGGAAC 57.261 34.615 0.00 0.00 0.00 3.62
583 617 9.396022 GAAGAAGTCATGGAGTAAATTATGGAA 57.604 33.333 0.00 0.00 0.00 3.53
584 618 8.772250 AGAAGAAGTCATGGAGTAAATTATGGA 58.228 33.333 0.00 0.00 0.00 3.41
585 619 8.970859 AGAAGAAGTCATGGAGTAAATTATGG 57.029 34.615 0.00 0.00 0.00 2.74
586 620 9.050601 GGAGAAGAAGTCATGGAGTAAATTATG 57.949 37.037 0.00 0.00 0.00 1.90
587 621 8.214364 GGGAGAAGAAGTCATGGAGTAAATTAT 58.786 37.037 0.00 0.00 0.00 1.28
588 622 7.403231 AGGGAGAAGAAGTCATGGAGTAAATTA 59.597 37.037 0.00 0.00 0.00 1.40
589 623 6.216456 AGGGAGAAGAAGTCATGGAGTAAATT 59.784 38.462 0.00 0.00 0.00 1.82
590 624 5.728741 AGGGAGAAGAAGTCATGGAGTAAAT 59.271 40.000 0.00 0.00 0.00 1.40
591 625 5.094387 AGGGAGAAGAAGTCATGGAGTAAA 58.906 41.667 0.00 0.00 0.00 2.01
592 626 4.689062 AGGGAGAAGAAGTCATGGAGTAA 58.311 43.478 0.00 0.00 0.00 2.24
593 627 4.338795 AGGGAGAAGAAGTCATGGAGTA 57.661 45.455 0.00 0.00 0.00 2.59
594 628 3.197927 AGGGAGAAGAAGTCATGGAGT 57.802 47.619 0.00 0.00 0.00 3.85
595 629 3.430098 CGAAGGGAGAAGAAGTCATGGAG 60.430 52.174 0.00 0.00 0.00 3.86
596 630 2.497675 CGAAGGGAGAAGAAGTCATGGA 59.502 50.000 0.00 0.00 0.00 3.41
597 631 2.497675 TCGAAGGGAGAAGAAGTCATGG 59.502 50.000 0.00 0.00 0.00 3.66
598 632 3.876274 TCGAAGGGAGAAGAAGTCATG 57.124 47.619 0.00 0.00 0.00 3.07
599 633 6.553100 AGATAATCGAAGGGAGAAGAAGTCAT 59.447 38.462 0.00 0.00 0.00 3.06
600 634 5.894393 AGATAATCGAAGGGAGAAGAAGTCA 59.106 40.000 0.00 0.00 0.00 3.41
601 635 6.039941 TGAGATAATCGAAGGGAGAAGAAGTC 59.960 42.308 0.00 0.00 0.00 3.01
602 636 5.894393 TGAGATAATCGAAGGGAGAAGAAGT 59.106 40.000 0.00 0.00 0.00 3.01
603 637 6.398234 TGAGATAATCGAAGGGAGAAGAAG 57.602 41.667 0.00 0.00 0.00 2.85
604 638 6.381420 ACTTGAGATAATCGAAGGGAGAAGAA 59.619 38.462 0.00 0.00 0.00 2.52
605 639 5.894393 ACTTGAGATAATCGAAGGGAGAAGA 59.106 40.000 0.00 0.00 0.00 2.87
606 640 6.155475 ACTTGAGATAATCGAAGGGAGAAG 57.845 41.667 0.00 0.00 0.00 2.85
607 641 5.069251 GGACTTGAGATAATCGAAGGGAGAA 59.931 44.000 0.00 0.00 0.00 2.87
608 642 4.585162 GGACTTGAGATAATCGAAGGGAGA 59.415 45.833 0.00 0.00 0.00 3.71
609 643 4.557695 CGGACTTGAGATAATCGAAGGGAG 60.558 50.000 0.00 0.00 0.00 4.30
610 644 3.318275 CGGACTTGAGATAATCGAAGGGA 59.682 47.826 0.00 0.00 0.00 4.20
611 645 3.068307 ACGGACTTGAGATAATCGAAGGG 59.932 47.826 0.00 0.00 0.00 3.95
612 646 4.291783 GACGGACTTGAGATAATCGAAGG 58.708 47.826 0.00 0.00 0.00 3.46
613 647 4.036971 AGGACGGACTTGAGATAATCGAAG 59.963 45.833 0.00 0.00 0.00 3.79
614 648 3.952323 AGGACGGACTTGAGATAATCGAA 59.048 43.478 0.00 0.00 0.00 3.71
615 649 3.552875 AGGACGGACTTGAGATAATCGA 58.447 45.455 0.00 0.00 0.00 3.59
616 650 3.992260 AGGACGGACTTGAGATAATCG 57.008 47.619 0.00 0.00 0.00 3.34
617 651 4.099573 TGGAAGGACGGACTTGAGATAATC 59.900 45.833 0.00 0.00 0.00 1.75
618 652 4.030913 TGGAAGGACGGACTTGAGATAAT 58.969 43.478 0.00 0.00 0.00 1.28
619 653 3.437213 TGGAAGGACGGACTTGAGATAA 58.563 45.455 0.00 0.00 0.00 1.75
620 654 3.095912 TGGAAGGACGGACTTGAGATA 57.904 47.619 0.00 0.00 0.00 1.98
621 655 1.938585 TGGAAGGACGGACTTGAGAT 58.061 50.000 0.00 0.00 0.00 2.75
622 656 1.343465 GTTGGAAGGACGGACTTGAGA 59.657 52.381 0.00 0.00 0.00 3.27
623 657 1.608283 GGTTGGAAGGACGGACTTGAG 60.608 57.143 0.00 0.00 0.00 3.02
624 658 0.395312 GGTTGGAAGGACGGACTTGA 59.605 55.000 0.00 0.00 0.00 3.02
625 659 0.107831 TGGTTGGAAGGACGGACTTG 59.892 55.000 0.00 0.00 0.00 3.16
626 660 1.064825 ATGGTTGGAAGGACGGACTT 58.935 50.000 0.00 0.00 0.00 3.01
627 661 0.324943 CATGGTTGGAAGGACGGACT 59.675 55.000 0.00 0.00 0.00 3.85
628 662 0.036306 ACATGGTTGGAAGGACGGAC 59.964 55.000 0.00 0.00 0.00 4.79
629 663 0.768622 AACATGGTTGGAAGGACGGA 59.231 50.000 0.00 0.00 0.00 4.69
630 664 1.539827 GAAACATGGTTGGAAGGACGG 59.460 52.381 0.00 0.00 0.00 4.79
631 665 2.484264 GAGAAACATGGTTGGAAGGACG 59.516 50.000 0.00 0.00 0.00 4.79
632 666 3.503748 CAGAGAAACATGGTTGGAAGGAC 59.496 47.826 0.00 0.00 0.00 3.85
633 667 3.138283 ACAGAGAAACATGGTTGGAAGGA 59.862 43.478 0.00 0.00 0.00 3.36
634 668 3.490348 ACAGAGAAACATGGTTGGAAGG 58.510 45.455 0.00 0.00 0.00 3.46
635 669 5.284079 CAAACAGAGAAACATGGTTGGAAG 58.716 41.667 0.00 0.00 39.84 3.46
636 670 4.441356 GCAAACAGAGAAACATGGTTGGAA 60.441 41.667 0.00 0.00 42.98 3.53
637 671 3.068024 GCAAACAGAGAAACATGGTTGGA 59.932 43.478 0.00 0.00 42.98 3.53
638 672 3.068590 AGCAAACAGAGAAACATGGTTGG 59.931 43.478 0.00 0.00 42.98 3.77
639 673 4.311816 AGCAAACAGAGAAACATGGTTG 57.688 40.909 0.00 0.00 45.03 3.77
640 674 4.498009 CGAAGCAAACAGAGAAACATGGTT 60.498 41.667 0.00 0.00 0.00 3.67
641 675 3.003689 CGAAGCAAACAGAGAAACATGGT 59.996 43.478 0.00 0.00 0.00 3.55
642 676 3.003689 ACGAAGCAAACAGAGAAACATGG 59.996 43.478 0.00 0.00 0.00 3.66
643 677 4.214980 ACGAAGCAAACAGAGAAACATG 57.785 40.909 0.00 0.00 0.00 3.21
644 678 4.601019 CAACGAAGCAAACAGAGAAACAT 58.399 39.130 0.00 0.00 0.00 2.71
645 679 3.730662 GCAACGAAGCAAACAGAGAAACA 60.731 43.478 0.00 0.00 0.00 2.83
646 680 2.783832 GCAACGAAGCAAACAGAGAAAC 59.216 45.455 0.00 0.00 0.00 2.78
647 681 2.538737 CGCAACGAAGCAAACAGAGAAA 60.539 45.455 0.00 0.00 0.00 2.52
648 682 1.003972 CGCAACGAAGCAAACAGAGAA 60.004 47.619 0.00 0.00 0.00 2.87
649 683 0.581529 CGCAACGAAGCAAACAGAGA 59.418 50.000 0.00 0.00 0.00 3.10
650 684 0.304705 ACGCAACGAAGCAAACAGAG 59.695 50.000 0.00 0.00 0.00 3.35
651 685 0.303493 GACGCAACGAAGCAAACAGA 59.697 50.000 0.00 0.00 0.00 3.41
652 686 0.304705 AGACGCAACGAAGCAAACAG 59.695 50.000 0.00 0.00 0.00 3.16
653 687 1.525197 CTAGACGCAACGAAGCAAACA 59.475 47.619 0.00 0.00 0.00 2.83
654 688 1.721804 GCTAGACGCAACGAAGCAAAC 60.722 52.381 0.00 0.00 38.92 2.93
655 689 0.511221 GCTAGACGCAACGAAGCAAA 59.489 50.000 0.00 0.00 38.92 3.68
656 690 2.150424 GCTAGACGCAACGAAGCAA 58.850 52.632 0.00 0.00 38.92 3.91
657 691 3.856508 GCTAGACGCAACGAAGCA 58.143 55.556 0.00 0.00 38.92 3.91
666 700 2.520979 CGCCTATAGAATGCTAGACGC 58.479 52.381 0.00 0.00 39.77 5.19
667 701 2.747989 TCCGCCTATAGAATGCTAGACG 59.252 50.000 0.00 0.00 0.00 4.18
668 702 3.428316 GCTCCGCCTATAGAATGCTAGAC 60.428 52.174 0.00 0.00 0.00 2.59
669 703 2.755655 GCTCCGCCTATAGAATGCTAGA 59.244 50.000 0.00 0.00 0.00 2.43
670 704 2.478709 CGCTCCGCCTATAGAATGCTAG 60.479 54.545 0.00 0.00 0.00 3.42
671 705 1.472878 CGCTCCGCCTATAGAATGCTA 59.527 52.381 0.00 0.00 0.00 3.49
672 706 0.244994 CGCTCCGCCTATAGAATGCT 59.755 55.000 0.00 0.00 0.00 3.79
673 707 0.737715 CCGCTCCGCCTATAGAATGC 60.738 60.000 0.00 0.00 0.00 3.56
674 708 0.888619 TCCGCTCCGCCTATAGAATG 59.111 55.000 0.00 0.00 0.00 2.67
675 709 0.889306 GTCCGCTCCGCCTATAGAAT 59.111 55.000 0.00 0.00 0.00 2.40
676 710 0.466739 TGTCCGCTCCGCCTATAGAA 60.467 55.000 0.00 0.00 0.00 2.10
677 711 0.466739 TTGTCCGCTCCGCCTATAGA 60.467 55.000 0.00 0.00 0.00 1.98
678 712 0.603569 ATTGTCCGCTCCGCCTATAG 59.396 55.000 0.00 0.00 0.00 1.31
679 713 1.913778 TATTGTCCGCTCCGCCTATA 58.086 50.000 0.00 0.00 0.00 1.31
680 714 1.045407 TTATTGTCCGCTCCGCCTAT 58.955 50.000 0.00 0.00 0.00 2.57
681 715 0.825410 TTTATTGTCCGCTCCGCCTA 59.175 50.000 0.00 0.00 0.00 3.93
682 716 0.035820 TTTTATTGTCCGCTCCGCCT 60.036 50.000 0.00 0.00 0.00 5.52
683 717 1.021968 ATTTTATTGTCCGCTCCGCC 58.978 50.000 0.00 0.00 0.00 6.13
684 718 2.844122 AATTTTATTGTCCGCTCCGC 57.156 45.000 0.00 0.00 0.00 5.54
685 719 4.349663 TGAAATTTTATTGTCCGCTCCG 57.650 40.909 0.00 0.00 0.00 4.63
700 734 4.323715 GGGGTCATCAGGCAAAATGAAATT 60.324 41.667 0.00 0.00 38.98 1.82
701 735 3.198417 GGGGTCATCAGGCAAAATGAAAT 59.802 43.478 0.00 0.00 33.89 2.17
702 736 2.566724 GGGGTCATCAGGCAAAATGAAA 59.433 45.455 0.00 0.00 33.89 2.69
703 737 2.178580 GGGGTCATCAGGCAAAATGAA 58.821 47.619 0.00 0.00 33.89 2.57
704 738 1.076841 TGGGGTCATCAGGCAAAATGA 59.923 47.619 0.00 0.00 0.00 2.57
705 739 1.559368 TGGGGTCATCAGGCAAAATG 58.441 50.000 0.00 0.00 0.00 2.32
706 740 2.181975 CTTGGGGTCATCAGGCAAAAT 58.818 47.619 0.00 0.00 0.00 1.82
707 741 1.631405 CTTGGGGTCATCAGGCAAAA 58.369 50.000 0.00 0.00 0.00 2.44
708 742 0.899717 GCTTGGGGTCATCAGGCAAA 60.900 55.000 0.00 0.00 37.22 3.68
709 743 1.304381 GCTTGGGGTCATCAGGCAA 60.304 57.895 0.00 0.00 37.22 4.52
710 744 2.356278 GCTTGGGGTCATCAGGCA 59.644 61.111 0.00 0.00 37.22 4.75
711 745 2.440980 GGCTTGGGGTCATCAGGC 60.441 66.667 0.00 0.00 36.64 4.85
712 746 2.153898 TTGGGCTTGGGGTCATCAGG 62.154 60.000 0.00 0.00 0.00 3.86
713 747 0.251742 TTTGGGCTTGGGGTCATCAG 60.252 55.000 0.00 0.00 0.00 2.90
714 748 0.189574 TTTTGGGCTTGGGGTCATCA 59.810 50.000 0.00 0.00 0.00 3.07
715 749 1.347062 TTTTTGGGCTTGGGGTCATC 58.653 50.000 0.00 0.00 0.00 2.92
716 750 1.629861 CATTTTTGGGCTTGGGGTCAT 59.370 47.619 0.00 0.00 0.00 3.06
717 751 1.055040 CATTTTTGGGCTTGGGGTCA 58.945 50.000 0.00 0.00 0.00 4.02
718 752 1.001974 GTCATTTTTGGGCTTGGGGTC 59.998 52.381 0.00 0.00 0.00 4.46
736 770 4.445452 TTGGGTATGAGACAGTTACGTC 57.555 45.455 0.00 0.50 36.08 4.34
737 771 4.322499 CCTTTGGGTATGAGACAGTTACGT 60.322 45.833 0.00 0.00 0.00 3.57
738 772 4.181578 CCTTTGGGTATGAGACAGTTACG 58.818 47.826 0.00 0.00 0.00 3.18
772 806 6.494666 TCCTACCCATTACTACTGATTTGG 57.505 41.667 0.00 0.00 0.00 3.28
805 839 3.726557 AATGGAAGCAAGATCTGGTCA 57.273 42.857 0.00 0.00 33.58 4.02
884 918 1.678101 GAAGCCTGTTTCAGCACAAGT 59.322 47.619 0.00 0.00 0.00 3.16
908 942 1.252904 AATGTGATGTGCTGGTGGGC 61.253 55.000 0.00 0.00 0.00 5.36
1158 1260 3.626924 GACAGCTCCACCACCCGT 61.627 66.667 0.00 0.00 0.00 5.28
1197 1299 2.747686 GGACCCTGCGAGTTTCCA 59.252 61.111 0.00 0.00 0.00 3.53
1369 1471 1.679944 CCATCTGCCACAGGTTACAGG 60.680 57.143 0.00 0.00 31.51 4.00
1380 1482 2.761767 CACATCCAATTTCCATCTGCCA 59.238 45.455 0.00 0.00 0.00 4.92
1420 1522 3.079578 CAGTGACATGGCTTCATTCTGT 58.920 45.455 0.00 0.00 0.00 3.41
1426 1528 1.421268 AGAACCAGTGACATGGCTTCA 59.579 47.619 0.00 0.00 44.80 3.02
1427 1529 1.808945 CAGAACCAGTGACATGGCTTC 59.191 52.381 0.00 0.00 44.80 3.86
1428 1530 1.421268 TCAGAACCAGTGACATGGCTT 59.579 47.619 0.00 0.00 44.80 4.35
1429 1531 1.059098 TCAGAACCAGTGACATGGCT 58.941 50.000 0.00 0.00 44.80 4.75
1430 1532 1.537202 GTTCAGAACCAGTGACATGGC 59.463 52.381 1.29 0.00 44.80 4.40
1635 1748 1.111277 GGGGACACAAAAAGCACAGT 58.889 50.000 0.00 0.00 0.00 3.55
1636 1749 1.402787 AGGGGACACAAAAAGCACAG 58.597 50.000 0.00 0.00 0.00 3.66
1637 1750 2.738587 TAGGGGACACAAAAAGCACA 57.261 45.000 0.00 0.00 0.00 4.57
1638 1751 5.914898 AATATAGGGGACACAAAAAGCAC 57.085 39.130 0.00 0.00 0.00 4.40
1639 1752 8.602472 AATAAATATAGGGGACACAAAAAGCA 57.398 30.769 0.00 0.00 0.00 3.91
1640 1753 9.884636 AAAATAAATATAGGGGACACAAAAAGC 57.115 29.630 0.00 0.00 0.00 3.51
1743 1856 4.649218 TCTCATCTCATCAATACGGAACCA 59.351 41.667 0.00 0.00 0.00 3.67
1750 1863 9.654663 TTGATCATCATCTCATCTCATCAATAC 57.345 33.333 0.00 0.00 0.00 1.89
1867 1981 7.451501 TTCATGACAATCAAATAAGCAGTGA 57.548 32.000 0.00 0.00 0.00 3.41
2042 2156 9.549509 GTAATAAAAAGCAATGACGTGATTGTA 57.450 29.630 25.22 12.22 35.98 2.41
2322 2437 1.120530 CACCGGGTACTAGAATGCCT 58.879 55.000 6.32 0.00 0.00 4.75
2657 2778 5.183904 AGGGAATAAGCTTGTTGCAAGTTAG 59.816 40.000 24.63 0.00 45.94 2.34
2663 2784 5.772672 TCTTTAAGGGAATAAGCTTGTTGCA 59.227 36.000 24.63 5.93 45.94 4.08
2664 2785 6.267496 TCTTTAAGGGAATAAGCTTGTTGC 57.733 37.500 17.33 17.33 43.29 4.17
2678 2799 8.398878 TGTACCAGTTACATTTTCTTTAAGGG 57.601 34.615 0.00 0.00 35.64 3.95
2685 2806 6.202188 CGAACACTGTACCAGTTACATTTTCT 59.798 38.462 0.00 0.00 42.59 2.52
2686 2807 6.360329 CGAACACTGTACCAGTTACATTTTC 58.640 40.000 0.00 0.00 42.59 2.29
2710 2831 5.625921 CCTCTAATAAGGTACGTAGAGCC 57.374 47.826 0.00 0.00 38.73 4.70
2738 2859 5.817296 CCGATGGAAATCAACAACTATCAGA 59.183 40.000 0.00 0.00 0.00 3.27
2765 2886 1.641577 GAGTGACCGTTGGACTATGC 58.358 55.000 0.00 0.00 0.00 3.14
2782 2903 1.227380 GGCATACCTCAGCACCGAG 60.227 63.158 0.00 0.00 0.00 4.63
2796 2918 3.584406 TGGCATAGCTTATACAGAGGCAT 59.416 43.478 0.00 0.00 0.00 4.40
2804 2926 2.859165 TGGCCTGGCATAGCTTATAC 57.141 50.000 22.05 0.00 0.00 1.47
2807 2929 0.846015 ACATGGCCTGGCATAGCTTA 59.154 50.000 22.05 0.00 0.00 3.09
2809 2931 0.032813 AAACATGGCCTGGCATAGCT 60.033 50.000 22.05 0.00 0.00 3.32
2820 2948 3.153919 TCCACCAAGAAGTAAACATGGC 58.846 45.455 0.00 0.00 34.45 4.40
2831 2959 5.640147 AGTTACAATGGATTCCACCAAGAA 58.360 37.500 7.76 0.00 43.47 2.52
2893 3021 8.599774 GCATAGAAGAACATCAAGACTAAACTC 58.400 37.037 0.00 0.00 0.00 3.01
2894 3022 8.097038 TGCATAGAAGAACATCAAGACTAAACT 58.903 33.333 0.00 0.00 0.00 2.66
2899 3051 6.047511 AGTGCATAGAAGAACATCAAGACT 57.952 37.500 0.00 0.00 0.00 3.24
2942 3094 8.824756 ACATAACTCTCAAGTCCTAGTATCAA 57.175 34.615 0.00 0.00 33.48 2.57
3025 3914 7.428020 AGCATATTAAAATGATTGCACGACAT 58.572 30.769 0.00 0.00 32.66 3.06
3084 4188 8.281212 AGGTGCAAAAGACAAATATTACTAGG 57.719 34.615 0.00 0.00 0.00 3.02
3099 4334 4.583871 AGGATCACTAAGAGGTGCAAAAG 58.416 43.478 0.00 0.00 37.16 2.27
3128 4375 5.653769 AGTCCCACCACATCATTTATTTGAG 59.346 40.000 0.00 0.00 0.00 3.02
3143 4390 1.095130 TAGGAACCCTAGTCCCACCA 58.905 55.000 0.00 0.00 34.61 4.17
3147 4394 1.790818 CTGGTAGGAACCCTAGTCCC 58.209 60.000 0.00 0.00 46.16 4.46
3148 4395 1.121378 GCTGGTAGGAACCCTAGTCC 58.879 60.000 0.00 0.00 46.16 3.85
3149 4396 0.745468 CGCTGGTAGGAACCCTAGTC 59.255 60.000 0.00 0.00 46.16 2.59
3150 4397 1.328430 GCGCTGGTAGGAACCCTAGT 61.328 60.000 0.00 0.00 46.16 2.57
3151 4398 1.327690 TGCGCTGGTAGGAACCCTAG 61.328 60.000 9.73 0.00 46.16 3.02
3152 4399 1.305465 TGCGCTGGTAGGAACCCTA 60.305 57.895 9.73 0.00 46.16 3.53
3154 4401 2.125106 CTGCGCTGGTAGGAACCC 60.125 66.667 9.73 0.00 46.16 4.11
3155 4402 1.956629 TAGCTGCGCTGGTAGGAACC 61.957 60.000 20.34 0.00 46.98 3.62
3156 4403 0.806492 GTAGCTGCGCTGGTAGGAAC 60.806 60.000 23.91 12.90 40.10 3.62
3157 4404 1.515954 GTAGCTGCGCTGGTAGGAA 59.484 57.895 23.91 4.58 40.10 3.36
3158 4405 2.771639 CGTAGCTGCGCTGGTAGGA 61.772 63.158 30.11 11.06 40.10 2.94
3159 4406 1.721664 TACGTAGCTGCGCTGGTAGG 61.722 60.000 31.19 31.19 40.10 3.18
3160 4407 0.317103 CTACGTAGCTGCGCTGGTAG 60.317 60.000 24.60 17.16 40.10 3.18
3162 4409 2.490217 CTACGTAGCTGCGCTGGT 59.510 61.111 24.60 22.44 40.10 4.00
3163 4410 2.278857 CCTACGTAGCTGCGCTGG 60.279 66.667 24.60 20.89 40.10 4.85
3164 4411 0.099968 TAACCTACGTAGCTGCGCTG 59.900 55.000 24.60 16.08 40.10 5.18
3167 4414 2.095364 CCCTATAACCTACGTAGCTGCG 60.095 54.545 23.12 23.12 37.94 5.18
3169 4416 5.008331 TCATCCCTATAACCTACGTAGCTG 58.992 45.833 17.41 7.17 0.00 4.24
3171 4418 4.398673 CCTCATCCCTATAACCTACGTAGC 59.601 50.000 17.41 0.00 0.00 3.58
3172 4419 5.415077 CACCTCATCCCTATAACCTACGTAG 59.585 48.000 15.92 15.92 0.00 3.51
3174 4421 4.150359 CACCTCATCCCTATAACCTACGT 58.850 47.826 0.00 0.00 0.00 3.57
3176 4423 4.748701 TCCACCTCATCCCTATAACCTAC 58.251 47.826 0.00 0.00 0.00 3.18
3177 4424 4.202792 CCTCCACCTCATCCCTATAACCTA 60.203 50.000 0.00 0.00 0.00 3.08
3178 4425 3.440154 CCTCCACCTCATCCCTATAACCT 60.440 52.174 0.00 0.00 0.00 3.50
3179 4426 2.907042 CCTCCACCTCATCCCTATAACC 59.093 54.545 0.00 0.00 0.00 2.85
3180 4427 3.325135 CACCTCCACCTCATCCCTATAAC 59.675 52.174 0.00 0.00 0.00 1.89
3182 4429 2.158158 CCACCTCCACCTCATCCCTATA 60.158 54.545 0.00 0.00 0.00 1.31
3184 4431 0.031111 CCACCTCCACCTCATCCCTA 60.031 60.000 0.00 0.00 0.00 3.53
3185 4432 1.307343 CCACCTCCACCTCATCCCT 60.307 63.158 0.00 0.00 0.00 4.20
3186 4433 1.306997 TCCACCTCCACCTCATCCC 60.307 63.158 0.00 0.00 0.00 3.85
3187 4434 1.908483 GTCCACCTCCACCTCATCC 59.092 63.158 0.00 0.00 0.00 3.51
3188 4435 0.970937 TCGTCCACCTCCACCTCATC 60.971 60.000 0.00 0.00 0.00 2.92
3191 4438 2.352032 CCTCGTCCACCTCCACCTC 61.352 68.421 0.00 0.00 0.00 3.85
3192 4439 2.283966 CCTCGTCCACCTCCACCT 60.284 66.667 0.00 0.00 0.00 4.00
3193 4440 3.391382 CCCTCGTCCACCTCCACC 61.391 72.222 0.00 0.00 0.00 4.61
3196 4443 3.775654 CAGCCCTCGTCCACCTCC 61.776 72.222 0.00 0.00 0.00 4.30
3197 4444 3.775654 CCAGCCCTCGTCCACCTC 61.776 72.222 0.00 0.00 0.00 3.85
3200 4447 4.459089 GCTCCAGCCCTCGTCCAC 62.459 72.222 0.00 0.00 34.31 4.02
3240 4487 1.588139 CTAAACCCTAGCCGCGACG 60.588 63.158 8.23 0.00 0.00 5.12
3241 4488 1.227176 CCTAAACCCTAGCCGCGAC 60.227 63.158 8.23 0.00 0.00 5.19
3242 4489 2.428925 CCCTAAACCCTAGCCGCGA 61.429 63.158 8.23 0.00 0.00 5.87
3243 4490 2.108362 CCCTAAACCCTAGCCGCG 59.892 66.667 0.00 0.00 0.00 6.46
3244 4491 2.509422 CCCCTAAACCCTAGCCGC 59.491 66.667 0.00 0.00 0.00 6.53
3245 4492 2.509422 GCCCCTAAACCCTAGCCG 59.491 66.667 0.00 0.00 0.00 5.52
3246 4493 2.509422 CGCCCCTAAACCCTAGCC 59.491 66.667 0.00 0.00 0.00 3.93
3247 4494 2.509422 CCGCCCCTAAACCCTAGC 59.491 66.667 0.00 0.00 0.00 3.42
3248 4495 2.509422 GCCGCCCCTAAACCCTAG 59.491 66.667 0.00 0.00 0.00 3.02
3249 4496 3.472726 CGCCGCCCCTAAACCCTA 61.473 66.667 0.00 0.00 0.00 3.53
3269 4516 3.248446 TAGCCGACACCAGCCAACC 62.248 63.158 0.00 0.00 0.00 3.77
3270 4517 1.741770 CTAGCCGACACCAGCCAAC 60.742 63.158 0.00 0.00 0.00 3.77
3273 4520 4.162690 CCCTAGCCGACACCAGCC 62.163 72.222 0.00 0.00 0.00 4.85
3274 4521 2.854187 GAACCCTAGCCGACACCAGC 62.854 65.000 0.00 0.00 0.00 4.85
3276 4523 2.288025 GGAACCCTAGCCGACACCA 61.288 63.158 0.00 0.00 0.00 4.17
3277 4524 2.582978 GGAACCCTAGCCGACACC 59.417 66.667 0.00 0.00 0.00 4.16
3282 4529 4.222847 GAGCCGGAACCCTAGCCG 62.223 72.222 5.05 0.00 46.80 5.52
3283 4530 3.862991 GGAGCCGGAACCCTAGCC 61.863 72.222 5.05 0.00 0.00 3.93
3284 4531 2.764547 AGGAGCCGGAACCCTAGC 60.765 66.667 5.05 0.00 0.00 3.42
3286 4533 1.381327 CTGAGGAGCCGGAACCCTA 60.381 63.158 5.05 0.00 0.00 3.53
3287 4534 2.685380 CTGAGGAGCCGGAACCCT 60.685 66.667 5.05 7.67 0.00 4.34
3288 4535 3.787001 CCTGAGGAGCCGGAACCC 61.787 72.222 5.05 1.57 0.00 4.11
3289 4536 3.787001 CCCTGAGGAGCCGGAACC 61.787 72.222 5.05 7.56 33.47 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.