Multiple sequence alignment - TraesCS6B01G200200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G200200 chr6B 100.000 7038 0 0 1 7038 240037358 240044395 0.000000e+00 12997.0
1 TraesCS6B01G200200 chr6D 95.616 4813 159 28 1 4785 140081732 140086520 0.000000e+00 7672.0
2 TraesCS6B01G200200 chr6D 94.673 1483 50 11 4814 6271 140086519 140087997 0.000000e+00 2274.0
3 TraesCS6B01G200200 chr6D 81.963 438 42 14 6612 7038 140089641 140090052 3.150000e-88 337.0
4 TraesCS6B01G200200 chr6D 96.154 78 2 1 6478 6554 140088146 140088223 7.410000e-25 126.0
5 TraesCS6B01G200200 chr6D 85.507 69 9 1 2799 2866 56935062 56935130 3.520000e-08 71.3
6 TraesCS6B01G200200 chr6A 94.886 3637 115 23 810 4426 183379455 183375870 0.000000e+00 5620.0
7 TraesCS6B01G200200 chr6A 94.057 875 35 6 5405 6271 183369497 183368632 0.000000e+00 1312.0
8 TraesCS6B01G200200 chr6A 87.857 560 55 8 280 828 183383035 183382478 0.000000e+00 645.0
9 TraesCS6B01G200200 chr6A 97.967 246 5 0 4415 4660 183370855 183370610 1.810000e-115 427.0
10 TraesCS6B01G200200 chr6A 90.514 253 22 1 29 281 183383367 183383117 4.070000e-87 333.0
11 TraesCS6B01G200200 chr6A 96.571 175 5 1 4652 4826 183369668 183369495 8.930000e-74 289.0
12 TraesCS6B01G200200 chr6A 88.412 233 15 3 6477 6708 183368422 183368201 3.240000e-68 270.0
13 TraesCS6B01G200200 chr6A 92.126 127 7 2 6751 6875 183368204 183368079 7.260000e-40 176.0
14 TraesCS6B01G200200 chr6A 85.542 83 4 1 6964 7038 183368028 183367946 5.850000e-11 80.5
15 TraesCS6B01G200200 chr6A 100.000 33 0 0 1 33 183533176 183533144 2.120000e-05 62.1
16 TraesCS6B01G200200 chr6A 92.683 41 2 1 2890 2929 613400881 613400921 2.740000e-04 58.4
17 TraesCS6B01G200200 chr1A 92.373 1639 84 20 3554 5189 13913765 13915365 0.000000e+00 2296.0
18 TraesCS6B01G200200 chr1A 91.023 1671 110 21 1850 3498 13912112 13913764 0.000000e+00 2218.0
19 TraesCS6B01G200200 chr1A 91.304 805 48 8 5483 6271 13915514 13916312 0.000000e+00 1079.0
20 TraesCS6B01G200200 chr1A 94.349 407 20 3 3526 3931 13898785 13899189 7.750000e-174 621.0
21 TraesCS6B01G200200 chr1A 86.770 514 28 21 1040 1546 13903689 13904169 2.890000e-148 536.0
22 TraesCS6B01G200200 chr1A 81.849 584 81 11 280 848 13902818 13903391 1.070000e-127 468.0
23 TraesCS6B01G200200 chr1A 87.189 281 27 2 1 281 13902465 13902736 1.910000e-80 311.0
24 TraesCS6B01G200200 chr1A 87.121 264 16 1 1596 1859 13904450 13904695 4.160000e-72 283.0
25 TraesCS6B01G200200 chr1A 94.839 155 8 0 5222 5376 13915365 13915519 7.050000e-60 243.0
26 TraesCS6B01G200200 chr7A 79.353 402 77 5 280 681 693808879 693809274 1.930000e-70 278.0
27 TraesCS6B01G200200 chr7A 89.157 83 5 3 5149 5227 527151149 527151067 4.490000e-17 100.0
28 TraesCS6B01G200200 chr3D 95.000 120 5 1 6270 6388 112723335 112723216 3.350000e-43 187.0
29 TraesCS6B01G200200 chr3B 95.726 117 4 1 6273 6388 694025132 694025016 3.350000e-43 187.0
30 TraesCS6B01G200200 chr3B 94.958 119 5 1 6273 6390 141125385 141125503 1.210000e-42 185.0
31 TraesCS6B01G200200 chr3B 94.872 117 5 1 6273 6388 188412796 188412912 1.560000e-41 182.0
32 TraesCS6B01G200200 chr3B 87.143 70 3 3 2859 2928 689152442 689152379 2.720000e-09 75.0
33 TraesCS6B01G200200 chr2B 95.726 117 4 1 6273 6388 612672759 612672875 3.350000e-43 187.0
34 TraesCS6B01G200200 chr2B 91.729 133 9 2 6262 6392 563855768 563855636 4.340000e-42 183.0
35 TraesCS6B01G200200 chr2B 78.151 238 25 12 2798 3023 516540818 516541040 7.410000e-25 126.0
36 TraesCS6B01G200200 chr7D 92.063 126 8 2 6264 6388 233649696 233649820 7.260000e-40 176.0
37 TraesCS6B01G200200 chr7D 90.909 132 9 3 6269 6399 33478450 33478579 2.610000e-39 174.0
38 TraesCS6B01G200200 chr7D 91.358 81 4 2 5151 5231 383219942 383219865 2.680000e-19 108.0
39 TraesCS6B01G200200 chr2D 86.792 159 20 1 6477 6634 492295862 492296020 7.260000e-40 176.0
40 TraesCS6B01G200200 chr2D 76.289 291 43 15 2839 3111 110848239 110847957 1.590000e-26 132.0
41 TraesCS6B01G200200 chr2A 86.792 159 20 1 6477 6634 637323665 637323823 7.260000e-40 176.0
42 TraesCS6B01G200200 chr1D 90.769 130 10 2 6263 6391 284915955 284915827 9.390000e-39 172.0
43 TraesCS6B01G200200 chr4A 94.667 75 2 1 5151 5225 595568161 595568233 1.600000e-21 115.0
44 TraesCS6B01G200200 chr4A 90.789 76 2 4 5155 5229 595568230 595568159 5.810000e-16 97.1
45 TraesCS6B01G200200 chr7B 94.286 70 1 3 5157 5225 413974890 413974957 3.470000e-18 104.0
46 TraesCS6B01G200200 chr7B 87.952 83 6 3 5149 5227 494742435 494742517 2.090000e-15 95.3
47 TraesCS6B01G200200 chr5D 75.191 262 42 17 2825 3075 273494444 273494693 1.250000e-17 102.0
48 TraesCS6B01G200200 chr5A 90.123 81 2 3 5149 5225 657060031 657060109 4.490000e-17 100.0
49 TraesCS6B01G200200 chr5B 81.538 130 7 12 2825 2945 309000560 309000681 2.700000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G200200 chr6B 240037358 240044395 7037 False 12997.000000 12997 100.000000 1 7038 1 chr6B.!!$F1 7037
1 TraesCS6B01G200200 chr6D 140081732 140090052 8320 False 2602.250000 7672 92.101500 1 7038 4 chr6D.!!$F2 7037
2 TraesCS6B01G200200 chr6A 183375870 183383367 7497 True 2199.333333 5620 91.085667 29 4426 3 chr6A.!!$R3 4397
3 TraesCS6B01G200200 chr6A 183367946 183370855 2909 True 425.750000 1312 92.445833 4415 7038 6 chr6A.!!$R2 2623
4 TraesCS6B01G200200 chr1A 13912112 13916312 4200 False 1459.000000 2296 92.384750 1850 6271 4 chr1A.!!$F2 4421
5 TraesCS6B01G200200 chr1A 13898785 13904695 5910 False 443.800000 621 87.455600 1 3931 5 chr1A.!!$F1 3930

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
641 4406 0.036765 AGCTAACGAACATGGCGGAA 60.037 50.000 13.57 2.10 0.00 4.30 F
775 4562 0.480252 GGCTTGGGGCATCCTAGATT 59.520 55.000 10.06 0.00 44.01 2.40 F
1764 9012 0.536260 GCAGCTCACATCTCTCAGGT 59.464 55.000 0.00 0.00 0.00 4.00 F
1865 9113 1.012841 GAGCTACTGCAATGCTGACC 58.987 55.000 18.78 6.27 42.74 4.02 F
2605 9870 1.300963 GAGGGCTCCTGCATGTGAA 59.699 57.895 0.00 0.00 41.91 3.18 F
3328 10603 0.982673 GAGTCGAAACGTGACCATCG 59.017 55.000 0.00 0.00 37.04 3.84 F
4221 11497 2.389059 CACTTACTCCGCAGATCATCG 58.611 52.381 0.00 0.00 0.00 3.84 F
5470 13711 1.182667 CGGCATGGATATCCCTCGTA 58.817 55.000 19.34 0.00 35.38 3.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1747 8977 1.193323 CCACCTGAGAGATGTGAGCT 58.807 55.000 0.00 0.0 0.00 4.09 R
1922 9171 1.764851 TGCTCAAAAATTGAACGCCG 58.235 45.000 2.99 0.0 39.58 6.46 R
2811 10077 1.001181 GCAATTCCCACAGCAACACAT 59.999 47.619 0.00 0.0 0.00 3.21 R
3058 10331 1.003118 TCCACCTCAACATGCCACTAC 59.997 52.381 0.00 0.0 0.00 2.73 R
3646 10922 1.363443 CACCAAATTGTGTGGCGCT 59.637 52.632 7.64 0.0 40.02 5.92 R
4255 11531 2.136298 TCCCAGCAAACAACACAGAA 57.864 45.000 0.00 0.0 0.00 3.02 R
5924 14177 0.248843 CACTCTGGAGGAGCACTTCC 59.751 60.000 5.30 5.3 45.48 3.46 R
6363 14630 0.030369 CCTCCGTCCGGAAATAGTCG 59.970 60.000 5.23 3.9 44.66 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 3756 5.626955 GCACAATCTTGTTTGACTAGCTTTC 59.373 40.000 0.00 0.00 39.91 2.62
84 3765 5.650266 TGTTTGACTAGCTTTCTTTTCCACA 59.350 36.000 0.00 0.00 0.00 4.17
135 3816 7.496529 TTGGTAGAAGAGTTGAACAAGAATG 57.503 36.000 0.00 0.00 0.00 2.67
248 3929 4.157817 GCCAAAAGCATCTGCACG 57.842 55.556 4.79 0.00 45.16 5.34
331 4095 0.475906 GGACATGGCTAGGGCATCTT 59.524 55.000 0.00 0.00 45.69 2.40
429 4193 2.300967 TTGGCGGGAGAAGGAGCAT 61.301 57.895 0.00 0.00 0.00 3.79
430 4194 1.852157 TTGGCGGGAGAAGGAGCATT 61.852 55.000 0.00 0.00 0.00 3.56
470 4234 1.289066 CTCTGCCGTTCTTGGTCGA 59.711 57.895 0.00 0.00 0.00 4.20
548 4312 2.086610 ACATTGGTTTTGTGAGGCCT 57.913 45.000 3.86 3.86 0.00 5.19
566 4331 2.089980 CCTGCCTCACAAAGATCTTGG 58.910 52.381 9.17 8.76 0.00 3.61
571 4336 2.416747 CTCACAAAGATCTTGGACGCA 58.583 47.619 17.08 0.00 0.00 5.24
577 4342 4.338118 ACAAAGATCTTGGACGCAAAAAGA 59.662 37.500 17.08 0.00 34.61 2.52
582 4347 1.676006 CTTGGACGCAAAAAGACACCT 59.324 47.619 0.00 0.00 0.00 4.00
618 4383 1.902508 ACCGTCAATGTGGATCTGACT 59.097 47.619 9.55 0.00 37.84 3.41
619 4384 2.303022 ACCGTCAATGTGGATCTGACTT 59.697 45.455 9.55 0.00 37.84 3.01
641 4406 0.036765 AGCTAACGAACATGGCGGAA 60.037 50.000 13.57 2.10 0.00 4.30
647 4412 1.013596 CGAACATGGCGGAATAGCAA 58.986 50.000 0.00 0.00 39.27 3.91
649 4414 1.334869 GAACATGGCGGAATAGCAAGG 59.665 52.381 0.00 0.00 39.27 3.61
752 4539 7.712205 CCATGTCAACATACTGAACTATGATGA 59.288 37.037 0.00 0.00 34.98 2.92
761 4548 3.875727 CTGAACTATGATGACAGGGCTTG 59.124 47.826 0.00 0.00 0.00 4.01
775 4562 0.480252 GGCTTGGGGCATCCTAGATT 59.520 55.000 10.06 0.00 44.01 2.40
1104 8073 2.583441 CGTTCCAGGTGAGGCTCCA 61.583 63.158 12.86 0.00 0.00 3.86
1209 8178 5.631992 GGACTAAGATTTGCTAAGTTGTGC 58.368 41.667 0.00 0.00 0.00 4.57
1227 8196 1.132588 GCTCGTCGATTAGTCATGCC 58.867 55.000 0.00 0.00 0.00 4.40
1242 8211 2.972021 TCATGCCTTATCCTCCGATTGA 59.028 45.455 0.00 0.00 0.00 2.57
1342 8311 3.588842 CCTCAGGGCCTATATCAATGGAA 59.411 47.826 5.28 0.00 0.00 3.53
1363 8332 8.089625 TGGAAGAATATTGTGTGGAGAGATTA 57.910 34.615 0.00 0.00 0.00 1.75
1405 8374 5.347620 TGTAGGGTGTGTATATGGTTGAC 57.652 43.478 0.00 0.00 0.00 3.18
1487 8466 4.620723 TCTAGAGCCTAACCTCATTCCAA 58.379 43.478 0.00 0.00 34.26 3.53
1543 8523 0.745486 CCATGTGCTTCGCCTGATCA 60.745 55.000 0.00 0.00 0.00 2.92
1586 8566 7.255801 GGGGAACAAAGTGATAACTCAAAATCA 60.256 37.037 0.00 0.00 31.85 2.57
1588 8568 8.968242 GGAACAAAGTGATAACTCAAAATCAAC 58.032 33.333 0.00 0.00 34.06 3.18
1604 8834 1.697432 TCAACGGAACCAACTGATCCT 59.303 47.619 0.00 0.00 0.00 3.24
1764 9012 0.536260 GCAGCTCACATCTCTCAGGT 59.464 55.000 0.00 0.00 0.00 4.00
1865 9113 1.012841 GAGCTACTGCAATGCTGACC 58.987 55.000 18.78 6.27 42.74 4.02
1940 9189 1.766069 ACGGCGTTCAATTTTTGAGC 58.234 45.000 6.77 0.00 41.38 4.26
2107 9364 7.394359 ACCATTCCATTCCATAATATTCCTTCG 59.606 37.037 0.00 0.00 0.00 3.79
2324 9584 6.092748 GCAATAAGTGTACTCCATTGGTTTG 58.907 40.000 15.86 0.00 32.94 2.93
2343 9603 8.856153 TGGTTTGTGTAGAGAAATGCTTATTA 57.144 30.769 0.00 0.00 0.00 0.98
2367 9628 3.199677 TGACTACCAGGTTGTTGTTTCG 58.800 45.455 8.20 0.00 0.00 3.46
2457 9718 6.823689 ACTACATTGTAATCTTTAGCCTGGTG 59.176 38.462 0.00 0.00 0.00 4.17
2605 9870 1.300963 GAGGGCTCCTGCATGTGAA 59.699 57.895 0.00 0.00 41.91 3.18
2669 9934 9.840427 CCGAATTCTGTTTGTTGTATTCTTAAT 57.160 29.630 3.52 0.00 0.00 1.40
2717 9982 2.158957 TCAAGTTCTTGGAGTCAACGCT 60.159 45.455 11.82 0.00 0.00 5.07
2811 10077 2.023404 TCAGTTGCTAGAGGATACCCCA 60.023 50.000 0.00 0.00 37.41 4.96
3044 10317 2.159382 CCTTTTCCCATGCGTAGTTGT 58.841 47.619 0.00 0.00 0.00 3.32
3058 10331 1.878953 AGTTGTTAGTTGAGGTGGCG 58.121 50.000 0.00 0.00 0.00 5.69
3142 10415 7.685481 TGGTCTGTTTGTATATCTTTTCCTGA 58.315 34.615 0.00 0.00 0.00 3.86
3328 10603 0.982673 GAGTCGAAACGTGACCATCG 59.017 55.000 0.00 0.00 37.04 3.84
3442 10717 3.462021 CTGCCAGAGTAGCCTATGAAAC 58.538 50.000 0.00 0.00 31.36 2.78
3601 10877 7.889589 TTGTGCTATATCACATCCTAATTCG 57.110 36.000 10.05 0.00 45.26 3.34
4221 11497 2.389059 CACTTACTCCGCAGATCATCG 58.611 52.381 0.00 0.00 0.00 3.84
4255 11531 1.341080 CCATGCCCCTGTTTGTTTCT 58.659 50.000 0.00 0.00 0.00 2.52
4618 11895 4.523943 TGCTCCAACAAATGCAATTACTCT 59.476 37.500 0.00 0.00 33.67 3.24
4619 11896 5.709631 TGCTCCAACAAATGCAATTACTCTA 59.290 36.000 0.00 0.00 33.67 2.43
4728 12955 2.678190 GCTGTATCTGGCTCGGAAAAGT 60.678 50.000 0.00 0.00 0.00 2.66
4884 13113 4.993705 TGAGAGTTTAAGTCCCATTGGT 57.006 40.909 1.20 0.00 0.00 3.67
5023 13252 3.391506 TCTCATCAACACCACTCACTG 57.608 47.619 0.00 0.00 0.00 3.66
5032 13261 6.764379 TCAACACCACTCACTGTCATAATTA 58.236 36.000 0.00 0.00 0.00 1.40
5296 13537 8.856490 AATTTCAGTTTGTTGTATGTCTTGAC 57.144 30.769 0.00 0.00 0.00 3.18
5400 13641 7.466804 ACATAATTGTCCCTCAGAAAAAGGTA 58.533 34.615 0.00 0.00 31.51 3.08
5415 13656 7.611855 CAGAAAAAGGTAGTCTTGTGGGATATT 59.388 37.037 0.00 0.00 35.55 1.28
5468 13709 1.448540 GCGGCATGGATATCCCTCG 60.449 63.158 19.34 16.50 35.38 4.63
5469 13710 1.975327 CGGCATGGATATCCCTCGT 59.025 57.895 19.34 0.00 35.38 4.18
5470 13711 1.182667 CGGCATGGATATCCCTCGTA 58.817 55.000 19.34 0.00 35.38 3.43
5700 13941 2.083774 TCATCTTAAAGGCTTGCCGTG 58.916 47.619 0.00 0.00 0.00 4.94
5758 14004 5.119931 TGCCAAAGTGTGCTAATTACTTG 57.880 39.130 0.00 0.00 35.06 3.16
5759 14005 3.920412 GCCAAAGTGTGCTAATTACTTGC 59.080 43.478 0.00 0.00 35.06 4.01
5784 14030 8.311120 GCGGAAATATTTTGTTTACTTCATTCG 58.689 33.333 1.43 0.00 0.00 3.34
5924 14177 3.820467 TCTTGCTATCCCATATTTTGGCG 59.180 43.478 0.00 0.00 44.97 5.69
5985 14249 5.644636 TCTTAATTTATCGGCAGGTTTCGTT 59.355 36.000 0.00 0.00 0.00 3.85
5993 14257 2.695359 GGCAGGTTTCGTTGTCTATGA 58.305 47.619 0.00 0.00 0.00 2.15
6171 14435 0.319900 GAAGTGGCTTCGCTCTGTCA 60.320 55.000 0.00 0.00 30.62 3.58
6197 14461 6.351371 GGAACTCTGGATCTCTGTGATGTAAA 60.351 42.308 0.00 0.00 35.14 2.01
6205 14472 3.932710 TCTCTGTGATGTAAATGGTTCGC 59.067 43.478 0.00 0.00 0.00 4.70
6220 14487 0.320596 TTCGCCGTACCGTTTCCAAT 60.321 50.000 0.00 0.00 0.00 3.16
6250 14517 5.321959 TGTGTCAGATCAGATCTCTTGAC 57.678 43.478 18.29 18.29 37.58 3.18
6271 14538 2.729467 CGACGTGTTTGGTTCAAGCAAA 60.729 45.455 10.73 10.73 42.49 3.68
6272 14539 3.443976 GACGTGTTTGGTTCAAGCAAAT 58.556 40.909 17.37 1.90 45.66 2.32
6273 14540 4.602995 GACGTGTTTGGTTCAAGCAAATA 58.397 39.130 17.37 12.34 45.66 1.40
6274 14541 4.356289 ACGTGTTTGGTTCAAGCAAATAC 58.644 39.130 24.31 24.31 46.78 1.89
6277 14544 4.982295 GTGTTTGGTTCAAGCAAATACTCC 59.018 41.667 25.93 11.95 46.74 3.85
6278 14545 4.038642 TGTTTGGTTCAAGCAAATACTCCC 59.961 41.667 17.37 4.83 45.66 4.30
6279 14546 2.432444 TGGTTCAAGCAAATACTCCCG 58.568 47.619 0.00 0.00 0.00 5.14
6280 14547 1.132453 GGTTCAAGCAAATACTCCCGC 59.868 52.381 0.00 0.00 0.00 6.13
6281 14548 1.132453 GTTCAAGCAAATACTCCCGCC 59.868 52.381 0.00 0.00 0.00 6.13
6282 14549 0.742990 TCAAGCAAATACTCCCGCCG 60.743 55.000 0.00 0.00 0.00 6.46
6283 14550 1.024579 CAAGCAAATACTCCCGCCGT 61.025 55.000 0.00 0.00 0.00 5.68
6284 14551 0.743345 AAGCAAATACTCCCGCCGTC 60.743 55.000 0.00 0.00 0.00 4.79
6285 14552 2.178235 GCAAATACTCCCGCCGTCC 61.178 63.158 0.00 0.00 0.00 4.79
6286 14553 1.881252 CAAATACTCCCGCCGTCCG 60.881 63.158 0.00 0.00 0.00 4.79
6287 14554 2.053865 AAATACTCCCGCCGTCCGA 61.054 57.895 0.00 0.00 40.02 4.55
6288 14555 1.606885 AAATACTCCCGCCGTCCGAA 61.607 55.000 0.00 0.00 40.02 4.30
6289 14556 1.606885 AATACTCCCGCCGTCCGAAA 61.607 55.000 0.00 0.00 40.02 3.46
6290 14557 1.606885 ATACTCCCGCCGTCCGAAAA 61.607 55.000 0.00 0.00 40.02 2.29
6291 14558 1.606885 TACTCCCGCCGTCCGAAAAT 61.607 55.000 0.00 0.00 40.02 1.82
6292 14559 1.142314 CTCCCGCCGTCCGAAAATA 59.858 57.895 0.00 0.00 40.02 1.40
6293 14560 1.149964 CTCCCGCCGTCCGAAAATAC 61.150 60.000 0.00 0.00 40.02 1.89
6294 14561 1.153509 CCCGCCGTCCGAAAATACT 60.154 57.895 0.00 0.00 40.02 2.12
6295 14562 0.741927 CCCGCCGTCCGAAAATACTT 60.742 55.000 0.00 0.00 40.02 2.24
6296 14563 0.372334 CCGCCGTCCGAAAATACTTG 59.628 55.000 0.00 0.00 40.02 3.16
6297 14564 1.073177 CGCCGTCCGAAAATACTTGT 58.927 50.000 0.00 0.00 40.02 3.16
6298 14565 1.060122 CGCCGTCCGAAAATACTTGTC 59.940 52.381 0.00 0.00 40.02 3.18
6299 14566 1.060122 GCCGTCCGAAAATACTTGTCG 59.940 52.381 0.00 0.00 34.58 4.35
6309 14576 6.827641 CGAAAATACTTGTCGGAGAAATTGA 58.172 36.000 0.00 0.00 39.69 2.57
6310 14577 7.464358 CGAAAATACTTGTCGGAGAAATTGAT 58.536 34.615 0.00 0.00 39.69 2.57
6311 14578 8.600625 CGAAAATACTTGTCGGAGAAATTGATA 58.399 33.333 0.00 0.00 39.69 2.15
6317 14584 8.970691 ACTTGTCGGAGAAATTGATAAAAATG 57.029 30.769 0.00 0.00 39.69 2.32
6318 14585 8.028938 ACTTGTCGGAGAAATTGATAAAAATGG 58.971 33.333 0.00 0.00 39.69 3.16
6319 14586 7.695480 TGTCGGAGAAATTGATAAAAATGGA 57.305 32.000 0.00 0.00 39.69 3.41
6320 14587 8.292444 TGTCGGAGAAATTGATAAAAATGGAT 57.708 30.769 0.00 0.00 39.69 3.41
6321 14588 8.190122 TGTCGGAGAAATTGATAAAAATGGATG 58.810 33.333 0.00 0.00 39.69 3.51
6322 14589 8.190784 GTCGGAGAAATTGATAAAAATGGATGT 58.809 33.333 0.00 0.00 39.69 3.06
6323 14590 9.402320 TCGGAGAAATTGATAAAAATGGATGTA 57.598 29.630 0.00 0.00 0.00 2.29
6360 14627 9.950496 AAATACATGTAGATACATCCATTCTCC 57.050 33.333 11.91 0.00 44.57 3.71
6361 14628 6.030548 ACATGTAGATACATCCATTCTCCG 57.969 41.667 0.00 0.00 44.57 4.63
6362 14629 5.775195 ACATGTAGATACATCCATTCTCCGA 59.225 40.000 0.00 0.00 44.57 4.55
6363 14630 5.707242 TGTAGATACATCCATTCTCCGAC 57.293 43.478 0.00 0.00 0.00 4.79
6364 14631 3.924918 AGATACATCCATTCTCCGACG 57.075 47.619 0.00 0.00 0.00 5.12
6365 14632 3.487372 AGATACATCCATTCTCCGACGA 58.513 45.455 0.00 0.00 0.00 4.20
6366 14633 3.253677 AGATACATCCATTCTCCGACGAC 59.746 47.826 0.00 0.00 0.00 4.34
6367 14634 1.475403 ACATCCATTCTCCGACGACT 58.525 50.000 0.00 0.00 0.00 4.18
6368 14635 2.651455 ACATCCATTCTCCGACGACTA 58.349 47.619 0.00 0.00 0.00 2.59
6369 14636 3.223435 ACATCCATTCTCCGACGACTAT 58.777 45.455 0.00 0.00 0.00 2.12
6370 14637 3.637229 ACATCCATTCTCCGACGACTATT 59.363 43.478 0.00 0.00 0.00 1.73
6371 14638 4.099573 ACATCCATTCTCCGACGACTATTT 59.900 41.667 0.00 0.00 0.00 1.40
6372 14639 4.303086 TCCATTCTCCGACGACTATTTC 57.697 45.455 0.00 0.00 0.00 2.17
6373 14640 3.067742 TCCATTCTCCGACGACTATTTCC 59.932 47.826 0.00 0.00 0.00 3.13
6374 14641 2.838386 TTCTCCGACGACTATTTCCG 57.162 50.000 0.00 0.00 0.00 4.30
6375 14642 1.019673 TCTCCGACGACTATTTCCGG 58.980 55.000 0.00 0.00 41.36 5.14
6376 14643 1.019673 CTCCGACGACTATTTCCGGA 58.980 55.000 0.00 0.00 45.74 5.14
6377 14644 0.734889 TCCGACGACTATTTCCGGAC 59.265 55.000 1.83 0.00 43.47 4.79
6378 14645 0.590732 CCGACGACTATTTCCGGACG 60.591 60.000 1.83 5.89 42.49 4.79
6379 14646 0.590732 CGACGACTATTTCCGGACGG 60.591 60.000 1.83 3.96 0.00 4.79
6380 14647 0.734889 GACGACTATTTCCGGACGGA 59.265 55.000 1.83 9.76 43.52 4.69
6381 14648 0.737219 ACGACTATTTCCGGACGGAG 59.263 55.000 13.64 3.57 46.06 4.63
6382 14649 0.030369 CGACTATTTCCGGACGGAGG 59.970 60.000 13.64 8.21 46.06 4.30
6383 14650 0.388294 GACTATTTCCGGACGGAGGG 59.612 60.000 13.64 7.89 46.06 4.30
6384 14651 0.032813 ACTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
6385 14652 0.674534 CTATTTCCGGACGGAGGGAG 59.325 60.000 13.64 8.24 46.06 4.30
6412 14679 1.268032 CCATCATCGCCGTAAACAAGC 60.268 52.381 0.00 0.00 0.00 4.01
6470 14747 1.610554 ATGCTGTCATGCCCCAAAGC 61.611 55.000 0.00 0.00 0.00 3.51
6501 14887 6.644347 ACAATGGTAGAAGATGAACAGTAGG 58.356 40.000 0.00 0.00 0.00 3.18
6611 14998 5.913137 CTGATCCTCAGTCTGTCTTAACT 57.087 43.478 0.00 0.00 39.58 2.24
6623 16391 4.022329 TCTGTCTTAACTGAATGTGAGCGA 60.022 41.667 0.00 0.00 31.23 4.93
6697 16465 2.960129 GTATTCCGCTGGCGTCCG 60.960 66.667 13.84 0.00 37.81 4.79
6714 16482 0.676736 CCGTGGCCTAGATTCTCTCC 59.323 60.000 3.32 0.00 0.00 3.71
6729 16497 1.003355 CTCCCGTCACAGGCACAAT 60.003 57.895 0.00 0.00 0.00 2.71
6732 16500 0.888736 CCCGTCACAGGCACAATCAA 60.889 55.000 0.00 0.00 0.00 2.57
6759 16527 0.883814 GAGGCATTGGAGATGAGGCG 60.884 60.000 0.00 0.00 0.00 5.52
6760 16528 1.153086 GGCATTGGAGATGAGGCGT 60.153 57.895 0.00 0.00 0.00 5.68
6761 16529 1.442526 GGCATTGGAGATGAGGCGTG 61.443 60.000 0.00 0.00 0.00 5.34
6762 16530 2.020131 CATTGGAGATGAGGCGTGC 58.980 57.895 0.00 0.00 0.00 5.34
6794 16562 3.807631 GAGTGTGTCGTGGCTGGCA 62.808 63.158 0.00 0.00 0.00 4.92
6827 16595 2.267006 CAGCCAGCGATGTGGTCT 59.733 61.111 0.00 0.00 40.09 3.85
6880 16650 1.403323 CTCTGAGCTCATGCGTACTCA 59.597 52.381 18.63 5.62 45.42 3.41
6920 16690 2.208431 CATCAGCTGGAAACGAGATCC 58.792 52.381 15.13 0.00 37.48 3.36
6921 16691 1.266178 TCAGCTGGAAACGAGATCCA 58.734 50.000 15.13 8.01 44.58 3.41
6923 16693 1.734465 CAGCTGGAAACGAGATCCAAC 59.266 52.381 5.57 5.85 45.96 3.77
6924 16694 1.087501 GCTGGAAACGAGATCCAACC 58.912 55.000 9.25 0.00 45.96 3.77
6925 16695 1.610624 GCTGGAAACGAGATCCAACCA 60.611 52.381 9.25 0.00 45.96 3.67
6926 16696 2.941415 GCTGGAAACGAGATCCAACCAT 60.941 50.000 9.25 0.00 45.96 3.55
6927 16697 2.939103 CTGGAAACGAGATCCAACCATC 59.061 50.000 9.25 0.00 45.96 3.51
6929 16699 2.939103 GGAAACGAGATCCAACCATCAG 59.061 50.000 0.00 0.00 36.92 2.90
6930 16700 2.029838 AACGAGATCCAACCATCAGC 57.970 50.000 0.00 0.00 0.00 4.26
6931 16701 1.198713 ACGAGATCCAACCATCAGCT 58.801 50.000 0.00 0.00 0.00 4.24
6932 16702 1.134580 ACGAGATCCAACCATCAGCTG 60.135 52.381 7.63 7.63 0.00 4.24
7003 16789 2.824341 TCTCTTTCCTCACCGTAACTCC 59.176 50.000 0.00 0.00 0.00 3.85
7009 16795 1.134491 CCTCACCGTAACTCCATTCCC 60.134 57.143 0.00 0.00 0.00 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 3756 6.018832 CCAAGCTTTGTGTATTTGTGGAAAAG 60.019 38.462 0.00 0.00 0.00 2.27
135 3816 2.650116 TTGGAGCCAGAGACCTCGC 61.650 63.158 0.00 0.00 34.09 5.03
266 3947 3.683885 TCCCTCAAGGACGAAGCTA 57.316 52.632 0.00 0.00 40.93 3.32
331 4095 1.059584 TCTTTCCTGGAGTGGTGGCA 61.060 55.000 0.00 0.00 0.00 4.92
470 4234 2.056906 GCGGATAGGTGCCTCCCATT 62.057 60.000 0.00 0.00 36.75 3.16
548 4312 2.783135 GTCCAAGATCTTTGTGAGGCA 58.217 47.619 4.86 0.00 0.00 4.75
566 4331 4.483476 AACATAGGTGTCTTTTTGCGTC 57.517 40.909 0.00 0.00 37.67 5.19
571 4336 7.123547 TGACTTGGAAAACATAGGTGTCTTTTT 59.876 33.333 0.00 0.00 37.67 1.94
577 4342 4.583073 GGTTGACTTGGAAAACATAGGTGT 59.417 41.667 0.00 0.00 41.28 4.16
582 4347 4.452825 TGACGGTTGACTTGGAAAACATA 58.547 39.130 0.00 0.00 0.00 2.29
618 4383 1.355971 GCCATGTTCGTTAGCTCGAA 58.644 50.000 6.18 6.18 45.46 3.71
619 4384 0.800683 CGCCATGTTCGTTAGCTCGA 60.801 55.000 0.00 0.00 38.08 4.04
641 4406 3.411517 ACTGCCGCCCCTTGCTAT 61.412 61.111 0.00 0.00 38.05 2.97
647 4412 3.391382 GTCTACACTGCCGCCCCT 61.391 66.667 0.00 0.00 0.00 4.79
649 4414 2.184579 GAGTCTACACTGCCGCCC 59.815 66.667 0.00 0.00 30.63 6.13
752 4539 4.066139 GGATGCCCCAAGCCCTGT 62.066 66.667 0.00 0.00 42.71 4.00
761 4548 4.729868 ACAATTGTAATCTAGGATGCCCC 58.270 43.478 9.97 0.00 0.00 5.80
1209 8178 2.783828 AGGCATGACTAATCGACGAG 57.216 50.000 0.00 0.00 0.00 4.18
1242 8211 4.686554 GCTCTAGGCATACGAATTTTCGAT 59.313 41.667 18.67 5.91 46.09 3.59
1305 8274 3.117093 CCCTGAGGAGTCCACCTAGATTA 60.117 52.174 12.86 0.00 40.73 1.75
1342 8311 7.372260 AGCTAATCTCTCCACACAATATTCT 57.628 36.000 0.00 0.00 0.00 2.40
1363 8332 4.904241 ACAAGAATAGCAGACAAAGAGCT 58.096 39.130 0.00 0.00 42.14 4.09
1487 8466 5.263599 TGCAGGATTCTATGAACCAAACAT 58.736 37.500 0.00 0.00 0.00 2.71
1543 8523 6.843752 TGTTCCCCATATACGTGGAATATTT 58.156 36.000 6.12 0.00 42.02 1.40
1586 8566 1.697432 TCAGGATCAGTTGGTTCCGTT 59.303 47.619 0.00 0.00 34.61 4.44
1588 8568 2.169352 AGATCAGGATCAGTTGGTTCCG 59.831 50.000 11.55 0.00 40.22 4.30
1604 8834 2.762887 CCTGACTAGTGGAAGCAGATCA 59.237 50.000 0.00 0.00 0.00 2.92
1723 8953 4.314440 ACCGCTCGCTCTTTGGCA 62.314 61.111 0.00 0.00 0.00 4.92
1747 8977 1.193323 CCACCTGAGAGATGTGAGCT 58.807 55.000 0.00 0.00 0.00 4.09
1865 9113 5.880054 ACAAGATAAATCCAACAGTTCCG 57.120 39.130 0.00 0.00 0.00 4.30
1922 9171 1.764851 TGCTCAAAAATTGAACGCCG 58.235 45.000 2.99 0.00 39.58 6.46
2107 9364 6.238402 GGAACAGTTCTAGAGTTTGTTTGGTC 60.238 42.308 13.13 6.77 32.58 4.02
2149 9406 5.672653 TGGTTCCATCCCTATGTTTGGTATA 59.327 40.000 0.00 0.00 0.00 1.47
2324 9584 9.757227 AGTCAGATAATAAGCATTTCTCTACAC 57.243 33.333 0.00 0.00 0.00 2.90
2343 9603 4.706842 AACAACAACCTGGTAGTCAGAT 57.293 40.909 0.00 0.00 46.18 2.90
2367 9628 7.360361 CAACATATAATACGGAAAGGGAAAGC 58.640 38.462 0.00 0.00 0.00 3.51
2490 9755 5.366768 ACAGGATGAGCTAGGTTAAATAGCA 59.633 40.000 18.34 4.39 43.45 3.49
2605 9870 3.534941 GGGCTAACGACCCGAGAT 58.465 61.111 0.00 0.00 37.67 2.75
2624 9889 2.478370 CGGTTCTGCATGCAAATGGTAG 60.478 50.000 22.88 8.21 0.00 3.18
2669 9934 6.926630 AAACACCATTTGGGCTAGAAAATA 57.073 33.333 0.96 0.00 42.05 1.40
2786 10051 5.307196 GGGGTATCCTCTAGCAACTGAAATA 59.693 44.000 0.00 0.00 0.00 1.40
2811 10077 1.001181 GCAATTCCCACAGCAACACAT 59.999 47.619 0.00 0.00 0.00 3.21
3044 10317 1.274167 CCACTACGCCACCTCAACTAA 59.726 52.381 0.00 0.00 0.00 2.24
3058 10331 1.003118 TCCACCTCAACATGCCACTAC 59.997 52.381 0.00 0.00 0.00 2.73
3142 10415 5.677319 TCCTGGACTCGAGAATATTTTGT 57.323 39.130 21.68 0.00 0.00 2.83
3328 10603 2.473235 GTGCTTCTGAACTCAAGTCGAC 59.527 50.000 7.70 7.70 0.00 4.20
3431 10706 2.375174 TGTCACCAAGGTTTCATAGGCT 59.625 45.455 0.00 0.00 0.00 4.58
3442 10717 8.023128 CACTTATTATTGTCTTTGTCACCAAGG 58.977 37.037 0.00 0.00 0.00 3.61
3463 10738 6.152379 GCGTCTGTATGATCATCATCACTTA 58.848 40.000 12.53 0.00 42.05 2.24
3464 10739 4.987285 GCGTCTGTATGATCATCATCACTT 59.013 41.667 12.53 0.00 42.05 3.16
3465 10740 4.554292 GCGTCTGTATGATCATCATCACT 58.446 43.478 12.53 0.00 42.05 3.41
3466 10741 3.363128 CGCGTCTGTATGATCATCATCAC 59.637 47.826 12.53 5.40 42.05 3.06
3524 10799 4.658063 TGGATGGTAAACAACGAAAGGAT 58.342 39.130 0.00 0.00 0.00 3.24
3601 10877 4.751767 AAGGAGAATGATGAGGAGACAC 57.248 45.455 0.00 0.00 0.00 3.67
3646 10922 1.363443 CACCAAATTGTGTGGCGCT 59.637 52.632 7.64 0.00 40.02 5.92
3739 11015 5.130350 CAATACCCTGAAATCACGGGTTAT 58.870 41.667 21.02 12.18 41.53 1.89
3740 11016 4.519213 CAATACCCTGAAATCACGGGTTA 58.481 43.478 21.02 12.06 41.53 2.85
3858 11134 8.499403 AAGAGGACAAAAAGAGCTATTATGTC 57.501 34.615 22.29 22.29 36.01 3.06
4255 11531 2.136298 TCCCAGCAAACAACACAGAA 57.864 45.000 0.00 0.00 0.00 3.02
4370 11646 8.131731 GGAGCTTTATTCCTAATCATGAACAAC 58.868 37.037 0.00 0.00 0.00 3.32
4618 11895 5.244851 TCACCAGCAGGCACAAATTTTATTA 59.755 36.000 0.00 0.00 39.06 0.98
4619 11896 4.040217 TCACCAGCAGGCACAAATTTTATT 59.960 37.500 0.00 0.00 39.06 1.40
5032 13261 5.762179 TGAACCTCAATACAAGGTGATCT 57.238 39.130 0.00 0.00 46.54 2.75
5194 13424 7.812191 CCCTCTGTGAAGAAATATAAGAGATCG 59.188 40.741 0.00 0.00 33.14 3.69
5195 13425 8.865090 TCCCTCTGTGAAGAAATATAAGAGATC 58.135 37.037 0.00 0.00 33.14 2.75
5197 13427 7.841729 ACTCCCTCTGTGAAGAAATATAAGAGA 59.158 37.037 0.00 0.00 33.14 3.10
5198 13428 8.017418 ACTCCCTCTGTGAAGAAATATAAGAG 57.983 38.462 0.00 0.00 0.00 2.85
5296 13537 5.188434 ACATCTTGACAGTTATGTGGATGG 58.812 41.667 14.34 0.00 40.68 3.51
5415 13656 5.336690 GCAGCAAGGATGAAAATTAAGGACA 60.337 40.000 0.00 0.00 0.00 4.02
5550 13791 3.072038 TCCTGGATAAGACATGCCTCATG 59.928 47.826 5.35 5.35 46.18 3.07
5700 13941 5.918608 TCCCAGCTAGTAATCTTGATCAAC 58.081 41.667 3.38 0.00 0.00 3.18
5758 14004 8.311120 CGAATGAAGTAAACAAAATATTTCCGC 58.689 33.333 0.10 0.00 0.00 5.54
5759 14005 9.337091 ACGAATGAAGTAAACAAAATATTTCCG 57.663 29.630 0.10 0.00 0.00 4.30
5924 14177 0.248843 CACTCTGGAGGAGCACTTCC 59.751 60.000 5.30 5.30 45.48 3.46
5985 14249 4.080919 CCTTCACTTCCACCATCATAGACA 60.081 45.833 0.00 0.00 0.00 3.41
5993 14257 1.352352 CAGTCCCTTCACTTCCACCAT 59.648 52.381 0.00 0.00 0.00 3.55
6171 14435 3.464720 TCACAGAGATCCAGAGTTCCT 57.535 47.619 0.00 0.00 0.00 3.36
6220 14487 4.670896 TCTGATCTGACACAAACACAGA 57.329 40.909 0.00 0.00 43.25 3.41
6250 14517 0.375454 TGCTTGAACCAAACACGTCG 59.625 50.000 0.00 0.00 0.00 5.12
6271 14538 1.606885 TTTTCGGACGGCGGGAGTAT 61.607 55.000 13.24 0.00 0.00 2.12
6272 14539 1.606885 ATTTTCGGACGGCGGGAGTA 61.607 55.000 13.24 0.00 0.00 2.59
6273 14540 1.606885 TATTTTCGGACGGCGGGAGT 61.607 55.000 13.24 0.00 0.00 3.85
6274 14541 1.142314 TATTTTCGGACGGCGGGAG 59.858 57.895 13.24 1.04 0.00 4.30
6275 14542 1.153588 GTATTTTCGGACGGCGGGA 60.154 57.895 13.24 2.15 0.00 5.14
6276 14543 0.741927 AAGTATTTTCGGACGGCGGG 60.742 55.000 13.24 0.00 0.00 6.13
6277 14544 0.372334 CAAGTATTTTCGGACGGCGG 59.628 55.000 13.24 0.00 0.00 6.13
6278 14545 1.060122 GACAAGTATTTTCGGACGGCG 59.940 52.381 4.80 4.80 0.00 6.46
6279 14546 1.060122 CGACAAGTATTTTCGGACGGC 59.940 52.381 0.00 0.00 0.00 5.68
6285 14552 6.827641 TCAATTTCTCCGACAAGTATTTTCG 58.172 36.000 0.00 0.00 0.00 3.46
6292 14559 8.028938 CCATTTTTATCAATTTCTCCGACAAGT 58.971 33.333 0.00 0.00 0.00 3.16
6293 14560 8.243426 TCCATTTTTATCAATTTCTCCGACAAG 58.757 33.333 0.00 0.00 0.00 3.16
6294 14561 8.116651 TCCATTTTTATCAATTTCTCCGACAA 57.883 30.769 0.00 0.00 0.00 3.18
6295 14562 7.695480 TCCATTTTTATCAATTTCTCCGACA 57.305 32.000 0.00 0.00 0.00 4.35
6296 14563 8.190784 ACATCCATTTTTATCAATTTCTCCGAC 58.809 33.333 0.00 0.00 0.00 4.79
6297 14564 8.292444 ACATCCATTTTTATCAATTTCTCCGA 57.708 30.769 0.00 0.00 0.00 4.55
6334 14601 9.950496 GGAGAATGGATGTATCTACATGTATTT 57.050 33.333 5.91 0.00 46.20 1.40
6335 14602 8.253810 CGGAGAATGGATGTATCTACATGTATT 58.746 37.037 5.91 7.65 46.20 1.89
6336 14603 7.615757 TCGGAGAATGGATGTATCTACATGTAT 59.384 37.037 5.91 0.00 46.20 2.29
6337 14604 6.946009 TCGGAGAATGGATGTATCTACATGTA 59.054 38.462 7.55 5.25 46.20 2.29
6338 14605 5.775195 TCGGAGAATGGATGTATCTACATGT 59.225 40.000 2.69 2.69 46.20 3.21
6339 14606 6.096036 GTCGGAGAATGGATGTATCTACATG 58.904 44.000 7.55 0.00 42.71 3.21
6340 14607 5.106118 CGTCGGAGAATGGATGTATCTACAT 60.106 44.000 2.53 2.53 44.48 2.29
6341 14608 4.215613 CGTCGGAGAATGGATGTATCTACA 59.784 45.833 0.00 0.00 39.69 2.74
6342 14609 4.454847 TCGTCGGAGAATGGATGTATCTAC 59.545 45.833 0.00 0.00 39.69 2.59
6343 14610 4.454847 GTCGTCGGAGAATGGATGTATCTA 59.545 45.833 0.00 0.00 39.69 1.98
6344 14611 3.253677 GTCGTCGGAGAATGGATGTATCT 59.746 47.826 0.00 0.00 39.69 1.98
6345 14612 3.253677 AGTCGTCGGAGAATGGATGTATC 59.746 47.826 0.00 0.00 39.69 2.24
6346 14613 3.223435 AGTCGTCGGAGAATGGATGTAT 58.777 45.455 0.00 0.00 39.69 2.29
6347 14614 2.651455 AGTCGTCGGAGAATGGATGTA 58.349 47.619 0.00 0.00 39.69 2.29
6348 14615 1.475403 AGTCGTCGGAGAATGGATGT 58.525 50.000 0.00 0.00 39.69 3.06
6349 14616 3.924918 ATAGTCGTCGGAGAATGGATG 57.075 47.619 0.00 0.00 39.69 3.51
6350 14617 4.262079 GGAAATAGTCGTCGGAGAATGGAT 60.262 45.833 0.00 0.00 39.69 3.41
6351 14618 3.067742 GGAAATAGTCGTCGGAGAATGGA 59.932 47.826 0.00 0.00 39.69 3.41
6352 14619 3.381949 GGAAATAGTCGTCGGAGAATGG 58.618 50.000 0.00 0.00 39.69 3.16
6353 14620 3.043586 CGGAAATAGTCGTCGGAGAATG 58.956 50.000 0.00 0.00 39.69 2.67
6354 14621 2.034305 CCGGAAATAGTCGTCGGAGAAT 59.966 50.000 0.00 0.00 42.94 2.40
6355 14622 1.402968 CCGGAAATAGTCGTCGGAGAA 59.597 52.381 0.00 0.00 42.94 2.87
6356 14623 1.019673 CCGGAAATAGTCGTCGGAGA 58.980 55.000 0.00 0.00 42.94 3.71
6357 14624 1.019673 TCCGGAAATAGTCGTCGGAG 58.980 55.000 0.00 0.00 43.84 4.63
6358 14625 0.734889 GTCCGGAAATAGTCGTCGGA 59.265 55.000 5.23 0.00 46.06 4.55
6359 14626 0.590732 CGTCCGGAAATAGTCGTCGG 60.591 60.000 5.23 0.00 41.80 4.79
6360 14627 0.590732 CCGTCCGGAAATAGTCGTCG 60.591 60.000 5.23 1.25 37.50 5.12
6361 14628 0.734889 TCCGTCCGGAAATAGTCGTC 59.265 55.000 5.23 0.00 42.05 4.20
6362 14629 0.737219 CTCCGTCCGGAAATAGTCGT 59.263 55.000 5.23 0.00 44.66 4.34
6363 14630 0.030369 CCTCCGTCCGGAAATAGTCG 59.970 60.000 5.23 3.90 44.66 4.18
6364 14631 0.388294 CCCTCCGTCCGGAAATAGTC 59.612 60.000 5.23 0.00 44.66 2.59
6365 14632 0.032813 TCCCTCCGTCCGGAAATAGT 60.033 55.000 5.23 0.00 44.66 2.12
6366 14633 0.674534 CTCCCTCCGTCCGGAAATAG 59.325 60.000 5.23 3.15 44.66 1.73
6367 14634 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
6368 14635 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
6369 14636 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
6370 14637 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
6371 14638 0.846015 TAATACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
6372 14639 0.957362 GTAATACTCCCTCCGTCCGG 59.043 60.000 0.00 0.00 0.00 5.14
6373 14640 0.957362 GGTAATACTCCCTCCGTCCG 59.043 60.000 0.00 0.00 0.00 4.79
6374 14641 1.336131 GGGTAATACTCCCTCCGTCC 58.664 60.000 0.00 0.00 41.58 4.79
6375 14642 2.077687 TGGGTAATACTCCCTCCGTC 57.922 55.000 2.65 0.00 44.84 4.79
6376 14643 2.090943 TGATGGGTAATACTCCCTCCGT 60.091 50.000 2.65 0.00 44.84 4.69
6377 14644 2.605257 TGATGGGTAATACTCCCTCCG 58.395 52.381 2.65 0.00 44.84 4.63
6378 14645 3.195825 CGATGATGGGTAATACTCCCTCC 59.804 52.174 2.65 0.00 44.84 4.30
6379 14646 3.368531 GCGATGATGGGTAATACTCCCTC 60.369 52.174 2.65 0.00 44.84 4.30
6380 14647 2.567615 GCGATGATGGGTAATACTCCCT 59.432 50.000 2.65 0.00 44.84 4.20
6381 14648 2.354805 GGCGATGATGGGTAATACTCCC 60.355 54.545 0.00 0.00 44.81 4.30
6382 14649 2.674177 CGGCGATGATGGGTAATACTCC 60.674 54.545 0.00 0.00 0.00 3.85
6383 14650 2.029290 ACGGCGATGATGGGTAATACTC 60.029 50.000 16.62 0.00 0.00 2.59
6384 14651 1.968493 ACGGCGATGATGGGTAATACT 59.032 47.619 16.62 0.00 0.00 2.12
6385 14652 2.450609 ACGGCGATGATGGGTAATAC 57.549 50.000 16.62 0.00 0.00 1.89
6470 14747 2.959516 TCTTCTACCATTGTCACGCTG 58.040 47.619 0.00 0.00 0.00 5.18
6475 14752 6.114187 ACTGTTCATCTTCTACCATTGTCA 57.886 37.500 0.00 0.00 0.00 3.58
6501 14887 2.536803 TGTAACGTTTCAGCGTCACTTC 59.463 45.455 5.91 0.00 45.00 3.01
6560 14947 0.982704 AGACCAGATCAAGTGCAGCT 59.017 50.000 0.00 0.00 0.00 4.24
6611 14998 2.736721 GTTTAGCTGTCGCTCACATTCA 59.263 45.455 0.00 0.00 45.15 2.57
6623 16391 3.326747 GACGTCAGGAATGTTTAGCTGT 58.673 45.455 11.55 0.00 0.00 4.40
6653 16421 2.048603 GGAATCAAAGCCGCAGCCT 61.049 57.895 0.00 0.00 41.25 4.58
6714 16482 0.950836 TTTGATTGTGCCTGTGACGG 59.049 50.000 0.00 0.00 0.00 4.79
6729 16497 2.041485 TCCAATGCCTCCACTCATTTGA 59.959 45.455 0.00 0.00 31.15 2.69
6732 16500 1.918262 TCTCCAATGCCTCCACTCATT 59.082 47.619 0.00 0.00 33.56 2.57
6884 16654 1.212688 TGATGGTTGGATCTTGCGGAT 59.787 47.619 0.00 0.00 37.37 4.18
6924 16694 3.181503 CCATCTCGTTTTTCCAGCTGATG 60.182 47.826 17.39 6.51 0.00 3.07
6925 16695 3.012518 CCATCTCGTTTTTCCAGCTGAT 58.987 45.455 17.39 0.00 0.00 2.90
6926 16696 2.426522 CCATCTCGTTTTTCCAGCTGA 58.573 47.619 17.39 0.00 0.00 4.26
6927 16697 1.470098 CCCATCTCGTTTTTCCAGCTG 59.530 52.381 6.78 6.78 0.00 4.24
6929 16699 1.740025 CTCCCATCTCGTTTTTCCAGC 59.260 52.381 0.00 0.00 0.00 4.85
6930 16700 3.334583 TCTCCCATCTCGTTTTTCCAG 57.665 47.619 0.00 0.00 0.00 3.86
6931 16701 3.780804 TTCTCCCATCTCGTTTTTCCA 57.219 42.857 0.00 0.00 0.00 3.53
6932 16702 4.082733 CCTTTTCTCCCATCTCGTTTTTCC 60.083 45.833 0.00 0.00 0.00 3.13
6935 16705 3.821033 CACCTTTTCTCCCATCTCGTTTT 59.179 43.478 0.00 0.00 0.00 2.43
6942 16712 6.350528 GGAAATTTCTCACCTTTTCTCCCATC 60.351 42.308 17.42 0.00 0.00 3.51
7003 16789 3.889196 TTTGTTTCGTTCGAGGGAATG 57.111 42.857 1.70 0.00 39.96 2.67
7009 16795 7.586300 ACAAATATCTGTTTTGTTTCGTTCGAG 59.414 33.333 0.00 0.00 42.96 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.