Multiple sequence alignment - TraesCS6B01G200100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G200100 chr6B 100.000 3107 0 0 1 3107 239912105 239915211 0.000000e+00 5738.0
1 TraesCS6B01G200100 chr6D 93.845 2161 57 26 1 2143 140036635 140038737 0.000000e+00 3184.0
2 TraesCS6B01G200100 chr6D 91.931 756 55 4 2353 3107 140038734 140039484 0.000000e+00 1053.0
3 TraesCS6B01G200100 chr6A 93.444 1388 41 17 278 1634 183767781 183766413 0.000000e+00 2013.0
4 TraesCS6B01G200100 chr6A 88.665 944 88 9 2172 3107 183765591 183764659 0.000000e+00 1133.0
5 TraesCS6B01G200100 chr6A 97.917 480 7 1 1634 2113 183766444 183765968 0.000000e+00 828.0
6 TraesCS6B01G200100 chr6A 93.701 127 4 1 13 139 183768160 183768038 1.470000e-43 187.0
7 TraesCS6B01G200100 chr7B 87.647 170 19 2 1684 1852 526883537 526883369 2.440000e-46 196.0
8 TraesCS6B01G200100 chr7A 76.178 382 82 9 2729 3107 287883206 287882831 3.160000e-45 193.0
9 TraesCS6B01G200100 chr7A 87.059 170 20 2 1684 1852 564346266 564346098 1.140000e-44 191.0
10 TraesCS6B01G200100 chr7A 90.698 43 3 1 37 78 680192214 680192172 4.330000e-04 56.5
11 TraesCS6B01G200100 chr1D 71.041 701 161 29 2438 3106 124349505 124350195 6.990000e-27 132.0
12 TraesCS6B01G200100 chr3B 88.235 51 4 2 36 85 422224320 422224369 3.350000e-05 60.2
13 TraesCS6B01G200100 chr2A 91.111 45 2 2 32 75 721476130 721476173 3.350000e-05 60.2
14 TraesCS6B01G200100 chr2A 92.500 40 2 1 37 75 139890650 139890689 4.330000e-04 56.5
15 TraesCS6B01G200100 chr3A 92.500 40 2 1 37 75 63136178 63136217 4.330000e-04 56.5
16 TraesCS6B01G200100 chr1B 92.308 39 2 1 37 74 137141418 137141380 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G200100 chr6B 239912105 239915211 3106 False 5738.00 5738 100.00000 1 3107 1 chr6B.!!$F1 3106
1 TraesCS6B01G200100 chr6D 140036635 140039484 2849 False 2118.50 3184 92.88800 1 3107 2 chr6D.!!$F1 3106
2 TraesCS6B01G200100 chr6A 183764659 183768160 3501 True 1040.25 2013 93.43175 13 3107 4 chr6A.!!$R1 3094

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
462 643 0.796312 TTCGTTTGAAGGCGAGCATC 59.204 50.0 0.0 0.0 38.4 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2209 2927 0.039074 CAGAGGTGTGACCGACTGAC 60.039 60.0 13.78 0.0 44.9 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 4.358310 AGAAGAAGGAAAAAGAAGGGGGAT 59.642 41.667 0.00 0.00 0.00 3.85
139 140 7.606132 GACTTACGGTCGTCTAATTAGATTG 57.394 40.000 17.95 13.47 35.07 2.67
140 141 7.325660 ACTTACGGTCGTCTAATTAGATTGA 57.674 36.000 17.95 15.36 34.39 2.57
141 142 7.765307 ACTTACGGTCGTCTAATTAGATTGAA 58.235 34.615 17.95 2.33 34.39 2.69
142 143 8.411683 ACTTACGGTCGTCTAATTAGATTGAAT 58.588 33.333 17.95 10.45 34.39 2.57
143 144 9.245962 CTTACGGTCGTCTAATTAGATTGAATT 57.754 33.333 17.95 9.26 34.39 2.17
145 146 8.571461 ACGGTCGTCTAATTAGATTGAATTAC 57.429 34.615 17.95 8.10 34.39 1.89
146 147 8.192774 ACGGTCGTCTAATTAGATTGAATTACA 58.807 33.333 17.95 0.00 34.39 2.41
147 148 9.193133 CGGTCGTCTAATTAGATTGAATTACAT 57.807 33.333 17.95 0.00 34.39 2.29
185 346 9.605275 TTATCTGTCTGATTGGATTCTTGTTAG 57.395 33.333 0.00 0.00 36.65 2.34
186 347 6.409704 TCTGTCTGATTGGATTCTTGTTAGG 58.590 40.000 0.00 0.00 0.00 2.69
187 348 6.213397 TCTGTCTGATTGGATTCTTGTTAGGA 59.787 38.462 0.00 0.00 0.00 2.94
188 349 6.409704 TGTCTGATTGGATTCTTGTTAGGAG 58.590 40.000 0.00 0.00 0.00 3.69
189 350 6.013379 TGTCTGATTGGATTCTTGTTAGGAGT 60.013 38.462 0.00 0.00 0.00 3.85
190 351 7.180229 TGTCTGATTGGATTCTTGTTAGGAGTA 59.820 37.037 0.00 0.00 0.00 2.59
191 352 8.207545 GTCTGATTGGATTCTTGTTAGGAGTAT 58.792 37.037 0.00 0.00 0.00 2.12
192 353 8.772250 TCTGATTGGATTCTTGTTAGGAGTATT 58.228 33.333 0.00 0.00 0.00 1.89
194 355 9.396022 TGATTGGATTCTTGTTAGGAGTATTTC 57.604 33.333 0.00 0.00 0.00 2.17
195 356 9.396022 GATTGGATTCTTGTTAGGAGTATTTCA 57.604 33.333 0.00 0.00 0.00 2.69
196 357 8.561738 TTGGATTCTTGTTAGGAGTATTTCAC 57.438 34.615 0.00 0.00 0.00 3.18
197 358 7.685481 TGGATTCTTGTTAGGAGTATTTCACA 58.315 34.615 0.00 0.00 0.00 3.58
198 359 7.824289 TGGATTCTTGTTAGGAGTATTTCACAG 59.176 37.037 0.00 0.00 0.00 3.66
226 387 9.674068 TGGCATGGCGAATATTTTACTAATATA 57.326 29.630 15.27 0.00 0.00 0.86
248 409 9.816354 ATATATTTTTGCCGCTAAAACTTTCAT 57.184 25.926 13.73 1.88 29.89 2.57
249 410 5.898630 TTTTTGCCGCTAAAACTTTCATC 57.101 34.783 8.40 0.00 29.89 2.92
250 411 4.576216 TTTGCCGCTAAAACTTTCATCA 57.424 36.364 0.00 0.00 0.00 3.07
251 412 3.552604 TGCCGCTAAAACTTTCATCAC 57.447 42.857 0.00 0.00 0.00 3.06
253 414 3.568007 TGCCGCTAAAACTTTCATCACTT 59.432 39.130 0.00 0.00 0.00 3.16
254 415 3.914364 GCCGCTAAAACTTTCATCACTTG 59.086 43.478 0.00 0.00 0.00 3.16
255 416 4.556699 GCCGCTAAAACTTTCATCACTTGT 60.557 41.667 0.00 0.00 0.00 3.16
256 417 5.334569 GCCGCTAAAACTTTCATCACTTGTA 60.335 40.000 0.00 0.00 0.00 2.41
257 418 6.664515 CCGCTAAAACTTTCATCACTTGTAA 58.335 36.000 0.00 0.00 0.00 2.41
258 419 7.136119 CCGCTAAAACTTTCATCACTTGTAAA 58.864 34.615 0.00 0.00 0.00 2.01
259 420 7.646130 CCGCTAAAACTTTCATCACTTGTAAAA 59.354 33.333 0.00 0.00 0.00 1.52
288 449 7.178274 AGCTATAATCACAACAAAATCCAACCA 59.822 33.333 0.00 0.00 0.00 3.67
298 459 4.202111 ACAAAATCCAACCAAACTTCTCCG 60.202 41.667 0.00 0.00 0.00 4.63
300 461 1.133363 TCCAACCAAACTTCTCCGGA 58.867 50.000 2.93 2.93 0.00 5.14
304 465 3.243401 CCAACCAAACTTCTCCGGAAAAG 60.243 47.826 16.16 16.16 0.00 2.27
328 491 4.884668 AATCCAACCTAACTTCTCACGA 57.115 40.909 0.00 0.00 0.00 4.35
348 511 3.751175 CGAAATCTTGCAGTCCTTGGTTA 59.249 43.478 0.00 0.00 0.00 2.85
349 512 4.378459 CGAAATCTTGCAGTCCTTGGTTAC 60.378 45.833 0.00 0.00 0.00 2.50
350 513 2.561478 TCTTGCAGTCCTTGGTTACC 57.439 50.000 0.00 0.00 0.00 2.85
351 514 1.771854 TCTTGCAGTCCTTGGTTACCA 59.228 47.619 0.00 0.00 0.00 3.25
352 515 2.173782 TCTTGCAGTCCTTGGTTACCAA 59.826 45.455 16.59 16.59 41.69 3.67
353 516 2.738587 TGCAGTCCTTGGTTACCAAA 57.261 45.000 18.10 1.01 43.44 3.28
354 517 3.019799 TGCAGTCCTTGGTTACCAAAA 57.980 42.857 18.10 6.53 43.44 2.44
382 545 4.379302 AAACTCCATCTCAAGCTTTCCT 57.621 40.909 0.00 0.00 0.00 3.36
383 546 3.625649 ACTCCATCTCAAGCTTTCCTC 57.374 47.619 0.00 0.00 0.00 3.71
384 547 2.238395 ACTCCATCTCAAGCTTTCCTCC 59.762 50.000 0.00 0.00 0.00 4.30
387 550 2.238144 CCATCTCAAGCTTTCCTCCTGA 59.762 50.000 0.00 0.00 0.00 3.86
457 638 2.489971 AGTTGATTCGTTTGAAGGCGA 58.510 42.857 0.00 0.00 37.57 5.54
462 643 0.796312 TTCGTTTGAAGGCGAGCATC 59.204 50.000 0.00 0.00 38.40 3.91
536 717 1.745653 CTTGAATCGCCCCCTCTTTTC 59.254 52.381 0.00 0.00 0.00 2.29
537 718 0.991920 TGAATCGCCCCCTCTTTTCT 59.008 50.000 0.00 0.00 0.00 2.52
538 719 1.354368 TGAATCGCCCCCTCTTTTCTT 59.646 47.619 0.00 0.00 0.00 2.52
539 720 2.225017 TGAATCGCCCCCTCTTTTCTTT 60.225 45.455 0.00 0.00 0.00 2.52
540 721 2.604912 ATCGCCCCCTCTTTTCTTTT 57.395 45.000 0.00 0.00 0.00 2.27
1008 1203 1.330655 TGGAGGGAGCGATGGAGAAC 61.331 60.000 0.00 0.00 0.00 3.01
1018 1213 1.406069 CGATGGAGAACAAGAGGTGGG 60.406 57.143 0.00 0.00 0.00 4.61
1129 1324 1.290324 GACCTGTCGCAGCTCTTCA 59.710 57.895 1.84 0.00 0.00 3.02
1401 1596 0.249120 TCCGCATGTACCTCCACAAG 59.751 55.000 0.00 0.00 30.84 3.16
1524 1719 0.463654 TCAAGTCGCACAACCTGCTT 60.464 50.000 0.00 0.00 44.64 3.91
2150 2868 3.620427 TTCCTGCGGAACTAATTAGCA 57.380 42.857 12.54 4.41 36.71 3.49
2151 2869 3.620427 TCCTGCGGAACTAATTAGCAA 57.380 42.857 12.54 0.00 37.38 3.91
2152 2870 4.150897 TCCTGCGGAACTAATTAGCAAT 57.849 40.909 12.54 0.00 37.38 3.56
2153 2871 4.127171 TCCTGCGGAACTAATTAGCAATC 58.873 43.478 12.54 8.38 37.38 2.67
2154 2872 4.130118 CCTGCGGAACTAATTAGCAATCT 58.870 43.478 12.54 0.00 37.38 2.40
2155 2873 4.024556 CCTGCGGAACTAATTAGCAATCTG 60.025 45.833 12.54 13.37 37.38 2.90
2156 2874 4.765273 TGCGGAACTAATTAGCAATCTGA 58.235 39.130 19.10 7.74 34.66 3.27
2157 2875 5.368145 TGCGGAACTAATTAGCAATCTGAT 58.632 37.500 19.10 0.00 34.66 2.90
2158 2876 5.822519 TGCGGAACTAATTAGCAATCTGATT 59.177 36.000 19.10 0.00 34.66 2.57
2159 2877 6.017934 TGCGGAACTAATTAGCAATCTGATTC 60.018 38.462 19.10 10.99 34.66 2.52
2160 2878 6.203723 GCGGAACTAATTAGCAATCTGATTCT 59.796 38.462 19.10 4.14 31.86 2.40
2161 2879 7.254932 GCGGAACTAATTAGCAATCTGATTCTT 60.255 37.037 19.10 2.66 31.86 2.52
2162 2880 9.261180 CGGAACTAATTAGCAATCTGATTCTTA 57.739 33.333 12.54 0.00 31.86 2.10
2168 2886 8.948631 AATTAGCAATCTGATTCTTAGAACGA 57.051 30.769 0.00 0.00 0.00 3.85
2169 2887 9.553064 AATTAGCAATCTGATTCTTAGAACGAT 57.447 29.630 0.00 0.00 0.00 3.73
2170 2888 8.581057 TTAGCAATCTGATTCTTAGAACGATC 57.419 34.615 0.00 0.00 0.00 3.69
2171 2889 6.577103 AGCAATCTGATTCTTAGAACGATCA 58.423 36.000 0.00 0.00 0.00 2.92
2172 2890 6.478344 AGCAATCTGATTCTTAGAACGATCAC 59.522 38.462 0.00 0.00 0.00 3.06
2173 2891 6.292596 GCAATCTGATTCTTAGAACGATCACC 60.293 42.308 0.00 0.00 0.00 4.02
2174 2892 6.723298 ATCTGATTCTTAGAACGATCACCT 57.277 37.500 0.00 0.00 0.00 4.00
2175 2893 5.895928 TCTGATTCTTAGAACGATCACCTG 58.104 41.667 0.00 0.00 0.00 4.00
2176 2894 4.433615 TGATTCTTAGAACGATCACCTGC 58.566 43.478 0.00 0.00 0.00 4.85
2177 2895 2.561733 TCTTAGAACGATCACCTGCG 57.438 50.000 0.00 0.00 0.00 5.18
2178 2896 0.924090 CTTAGAACGATCACCTGCGC 59.076 55.000 0.00 0.00 0.00 6.09
2179 2897 0.459585 TTAGAACGATCACCTGCGCC 60.460 55.000 4.18 0.00 0.00 6.53
2180 2898 2.607668 TAGAACGATCACCTGCGCCG 62.608 60.000 4.18 0.00 0.00 6.46
2190 2908 4.451150 CTGCGCCGGCCTAACTGA 62.451 66.667 23.46 0.00 38.85 3.41
2191 2909 4.752879 TGCGCCGGCCTAACTGAC 62.753 66.667 23.46 2.68 38.85 3.51
2192 2910 4.752879 GCGCCGGCCTAACTGACA 62.753 66.667 23.46 0.00 0.00 3.58
2193 2911 2.813908 CGCCGGCCTAACTGACAC 60.814 66.667 23.46 0.00 0.00 3.67
2194 2912 2.436115 GCCGGCCTAACTGACACC 60.436 66.667 18.11 0.00 0.00 4.16
2195 2913 2.125673 CCGGCCTAACTGACACCG 60.126 66.667 0.00 0.00 43.44 4.94
2196 2914 2.813908 CGGCCTAACTGACACCGC 60.814 66.667 0.00 0.00 37.05 5.68
2197 2915 2.436115 GGCCTAACTGACACCGCC 60.436 66.667 0.00 0.00 0.00 6.13
2198 2916 2.663196 GCCTAACTGACACCGCCT 59.337 61.111 0.00 0.00 0.00 5.52
2199 2917 1.448013 GCCTAACTGACACCGCCTC 60.448 63.158 0.00 0.00 0.00 4.70
2200 2918 1.153823 CCTAACTGACACCGCCTCG 60.154 63.158 0.00 0.00 0.00 4.63
2201 2919 1.805945 CTAACTGACACCGCCTCGC 60.806 63.158 0.00 0.00 0.00 5.03
2202 2920 2.214181 CTAACTGACACCGCCTCGCT 62.214 60.000 0.00 0.00 0.00 4.93
2203 2921 2.486636 TAACTGACACCGCCTCGCTG 62.487 60.000 0.00 0.00 0.00 5.18
2213 2931 4.504916 CCTCGCTGCTCCGGTCAG 62.505 72.222 17.97 17.97 34.79 3.51
2214 2932 3.753434 CTCGCTGCTCCGGTCAGT 61.753 66.667 21.33 0.00 34.21 3.41
2215 2933 3.691744 CTCGCTGCTCCGGTCAGTC 62.692 68.421 21.33 14.86 34.21 3.51
2223 2941 2.049433 CCGGTCAGTCGGTCACAC 60.049 66.667 0.00 0.00 44.60 3.82
2224 2942 2.049433 CGGTCAGTCGGTCACACC 60.049 66.667 0.00 0.00 34.05 4.16
2225 2943 2.561956 CGGTCAGTCGGTCACACCT 61.562 63.158 0.00 0.00 35.66 4.00
2226 2944 1.289380 GGTCAGTCGGTCACACCTC 59.711 63.158 0.00 0.00 35.66 3.85
2227 2945 1.179814 GGTCAGTCGGTCACACCTCT 61.180 60.000 0.00 0.00 35.66 3.69
2228 2946 0.039074 GTCAGTCGGTCACACCTCTG 60.039 60.000 7.84 7.84 38.37 3.35
2229 2947 0.179001 TCAGTCGGTCACACCTCTGA 60.179 55.000 11.08 11.08 41.15 3.27
2230 2948 0.242286 CAGTCGGTCACACCTCTGAG 59.758 60.000 0.00 0.00 38.89 3.35
2231 2949 1.080434 GTCGGTCACACCTCTGAGC 60.080 63.158 0.00 0.00 35.66 4.26
2232 2950 1.228583 TCGGTCACACCTCTGAGCT 60.229 57.895 0.00 0.00 36.66 4.09
2233 2951 1.080230 CGGTCACACCTCTGAGCTG 60.080 63.158 0.00 0.00 36.66 4.24
2234 2952 1.375268 GGTCACACCTCTGAGCTGC 60.375 63.158 0.00 0.00 36.04 5.25
2235 2953 1.735920 GTCACACCTCTGAGCTGCG 60.736 63.158 0.00 0.00 0.00 5.18
2236 2954 3.117171 CACACCTCTGAGCTGCGC 61.117 66.667 0.00 0.00 0.00 6.09
2237 2955 4.385405 ACACCTCTGAGCTGCGCC 62.385 66.667 4.18 0.00 0.00 6.53
2259 2977 3.127533 GCATCAGCGACACCCCAC 61.128 66.667 0.00 0.00 0.00 4.61
2260 2978 2.436646 CATCAGCGACACCCCACC 60.437 66.667 0.00 0.00 0.00 4.61
2261 2979 3.717294 ATCAGCGACACCCCACCC 61.717 66.667 0.00 0.00 0.00 4.61
2265 2983 3.777910 GCGACACCCCACCCGTAT 61.778 66.667 0.00 0.00 0.00 3.06
2266 2984 2.497770 CGACACCCCACCCGTATC 59.502 66.667 0.00 0.00 0.00 2.24
2267 2985 2.352821 CGACACCCCACCCGTATCA 61.353 63.158 0.00 0.00 0.00 2.15
2268 2986 1.682451 CGACACCCCACCCGTATCAT 61.682 60.000 0.00 0.00 0.00 2.45
2269 2987 0.106149 GACACCCCACCCGTATCATC 59.894 60.000 0.00 0.00 0.00 2.92
2270 2988 1.069090 CACCCCACCCGTATCATCG 59.931 63.158 0.00 0.00 0.00 3.84
2271 2989 1.075822 ACCCCACCCGTATCATCGA 60.076 57.895 0.00 0.00 0.00 3.59
2272 2990 1.366366 CCCCACCCGTATCATCGAC 59.634 63.158 0.00 0.00 0.00 4.20
2273 2991 1.366366 CCCACCCGTATCATCGACC 59.634 63.158 0.00 0.00 0.00 4.79
2274 2992 1.007734 CCACCCGTATCATCGACCG 60.008 63.158 0.00 0.00 0.00 4.79
2275 2993 1.660575 CACCCGTATCATCGACCGC 60.661 63.158 0.00 0.00 0.00 5.68
2276 2994 2.049433 CCCGTATCATCGACCGCC 60.049 66.667 0.00 0.00 0.00 6.13
2277 2995 2.049433 CCGTATCATCGACCGCCC 60.049 66.667 0.00 0.00 0.00 6.13
2278 2996 2.428569 CGTATCATCGACCGCCCG 60.429 66.667 0.00 0.00 0.00 6.13
2279 2997 2.726274 GTATCATCGACCGCCCGT 59.274 61.111 0.00 0.00 0.00 5.28
2280 2998 1.371389 GTATCATCGACCGCCCGTC 60.371 63.158 0.00 0.00 38.21 4.79
2281 2999 2.558286 TATCATCGACCGCCCGTCC 61.558 63.158 0.00 0.00 38.36 4.79
2282 3000 2.971095 TATCATCGACCGCCCGTCCT 62.971 60.000 0.00 0.00 38.36 3.85
2283 3001 2.971095 ATCATCGACCGCCCGTCCTA 62.971 60.000 0.00 0.00 38.36 2.94
2284 3002 2.203451 ATCGACCGCCCGTCCTAT 60.203 61.111 0.00 0.00 38.36 2.57
2285 3003 2.561956 ATCGACCGCCCGTCCTATG 61.562 63.158 0.00 0.00 38.36 2.23
2286 3004 4.944372 CGACCGCCCGTCCTATGC 62.944 72.222 0.00 0.00 38.36 3.14
2287 3005 4.603946 GACCGCCCGTCCTATGCC 62.604 72.222 0.00 0.00 35.23 4.40
2290 3008 3.598715 CGCCCGTCCTATGCCGTA 61.599 66.667 0.00 0.00 0.00 4.02
2291 3009 2.927580 CGCCCGTCCTATGCCGTAT 61.928 63.158 0.00 0.00 0.00 3.06
2292 3010 1.374252 GCCCGTCCTATGCCGTATG 60.374 63.158 0.00 0.00 0.00 2.39
2293 3011 1.374252 CCCGTCCTATGCCGTATGC 60.374 63.158 0.00 0.00 41.77 3.14
2294 3012 1.374252 CCGTCCTATGCCGTATGCC 60.374 63.158 0.00 0.00 40.16 4.40
2295 3013 1.733041 CGTCCTATGCCGTATGCCG 60.733 63.158 0.00 0.00 40.16 5.69
2296 3014 1.663739 GTCCTATGCCGTATGCCGA 59.336 57.895 0.00 0.00 40.16 5.54
2297 3015 0.666577 GTCCTATGCCGTATGCCGAC 60.667 60.000 0.00 0.00 40.16 4.79
2298 3016 1.110518 TCCTATGCCGTATGCCGACA 61.111 55.000 0.00 0.00 40.16 4.35
2299 3017 0.667487 CCTATGCCGTATGCCGACAG 60.667 60.000 0.00 0.00 40.16 3.51
2300 3018 1.284982 CTATGCCGTATGCCGACAGC 61.285 60.000 0.00 0.00 40.16 4.40
2332 3050 4.509756 CGTCCTCGTCTCCGTCTA 57.490 61.111 0.00 0.00 35.01 2.59
2333 3051 2.989196 CGTCCTCGTCTCCGTCTAT 58.011 57.895 0.00 0.00 35.01 1.98
2334 3052 0.860533 CGTCCTCGTCTCCGTCTATC 59.139 60.000 0.00 0.00 35.01 2.08
2335 3053 1.538634 CGTCCTCGTCTCCGTCTATCT 60.539 57.143 0.00 0.00 35.01 1.98
2336 3054 2.137523 GTCCTCGTCTCCGTCTATCTC 58.862 57.143 0.00 0.00 35.01 2.75
2337 3055 2.040939 TCCTCGTCTCCGTCTATCTCT 58.959 52.381 0.00 0.00 35.01 3.10
2338 3056 2.139917 CCTCGTCTCCGTCTATCTCTG 58.860 57.143 0.00 0.00 35.01 3.35
2339 3057 2.484065 CCTCGTCTCCGTCTATCTCTGT 60.484 54.545 0.00 0.00 35.01 3.41
2340 3058 2.542178 CTCGTCTCCGTCTATCTCTGTG 59.458 54.545 0.00 0.00 35.01 3.66
2341 3059 1.003331 CGTCTCCGTCTATCTCTGTGC 60.003 57.143 0.00 0.00 0.00 4.57
2342 3060 1.003331 GTCTCCGTCTATCTCTGTGCG 60.003 57.143 0.00 0.00 0.00 5.34
2343 3061 1.134491 TCTCCGTCTATCTCTGTGCGA 60.134 52.381 0.00 0.00 0.00 5.10
2344 3062 1.671328 CTCCGTCTATCTCTGTGCGAA 59.329 52.381 0.00 0.00 0.00 4.70
2345 3063 1.671328 TCCGTCTATCTCTGTGCGAAG 59.329 52.381 0.00 0.00 0.00 3.79
2362 3080 2.310577 GAAGCAAATCAACTGACACGC 58.689 47.619 0.00 0.00 0.00 5.34
2374 3092 6.734137 TCAACTGACACGCAAATTTATTTCT 58.266 32.000 0.00 0.00 0.00 2.52
2476 3194 2.033151 GCTGAACAAAGTACACGGTCAC 60.033 50.000 0.00 0.00 0.00 3.67
2511 3230 6.620877 TGATGAAGTTACCCTCAACATAGT 57.379 37.500 0.00 0.00 0.00 2.12
2529 3248 5.477291 ACATAGTCGATCCAAGATAATCGGT 59.523 40.000 5.08 0.00 43.73 4.69
2552 3271 2.805353 CAGAACGCACGCGCTACT 60.805 61.111 12.02 5.62 44.19 2.57
2553 3272 2.805353 AGAACGCACGCGCTACTG 60.805 61.111 12.02 0.00 44.19 2.74
2561 3280 0.645355 CACGCGCTACTGTACCAATG 59.355 55.000 5.73 0.00 0.00 2.82
2595 3314 0.036388 ATCCGAGAACAACGCCATGT 60.036 50.000 0.00 0.00 34.24 3.21
2633 3352 3.744559 GTGCACGACAACACCCAT 58.255 55.556 0.00 0.00 0.00 4.00
2639 3358 1.548719 CACGACAACACCCATAGGAGA 59.451 52.381 0.00 0.00 36.73 3.71
2702 3427 3.719871 GAAACCCATACCCCAAAAGGAT 58.280 45.455 0.00 0.00 38.24 3.24
2709 3434 2.532250 ACCCCAAAAGGATCATCACC 57.468 50.000 0.00 0.00 38.24 4.02
2791 3516 4.007644 CTCCCTCGTGCCAGCACA 62.008 66.667 21.67 8.76 46.47 4.57
2801 3526 1.228245 GCCAGCACAAGGTCTCCAA 60.228 57.895 0.00 0.00 0.00 3.53
2843 3568 1.343478 ACTCCAGATCCGGATCAAGGT 60.343 52.381 38.83 28.07 40.22 3.50
2844 3569 1.069823 CTCCAGATCCGGATCAAGGTG 59.930 57.143 38.83 32.80 40.22 4.00
2861 3586 0.179150 GTGTCGCCACTGCTAGAGAG 60.179 60.000 0.00 0.00 38.61 3.20
2862 3587 0.322546 TGTCGCCACTGCTAGAGAGA 60.323 55.000 0.00 0.00 34.43 3.10
2898 3623 4.077184 CCCGCGCTCCACCACTTA 62.077 66.667 5.56 0.00 0.00 2.24
2912 3637 2.205152 ACTTACCACCCACGCGACT 61.205 57.895 15.93 0.00 0.00 4.18
2938 3666 2.852495 AAAGACATCGTCGCCGCCAT 62.852 55.000 0.00 0.00 37.67 4.40
2939 3667 3.630148 GACATCGTCGCCGCCATG 61.630 66.667 0.00 0.00 0.00 3.66
2940 3668 4.141965 ACATCGTCGCCGCCATGA 62.142 61.111 0.00 0.00 0.00 3.07
3090 3818 1.051812 ATTCCTAGCCGGACATCAGG 58.948 55.000 5.05 2.98 42.97 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.535489 ACGTCTTACATTAATAAACAGAGGC 57.465 36.000 0.00 0.00 0.00 4.70
85 86 3.945921 CGTCTTATCCCCCTTCTTTTTCC 59.054 47.826 0.00 0.00 0.00 3.13
86 87 4.586884 ACGTCTTATCCCCCTTCTTTTTC 58.413 43.478 0.00 0.00 0.00 2.29
121 122 8.570096 TGTAATTCAATCTAATTAGACGACCG 57.430 34.615 17.35 5.00 33.19 4.79
144 145 8.874156 TCAGACAGATAAGATAGGCATTAATGT 58.126 33.333 16.61 0.70 0.00 2.71
145 146 9.887629 ATCAGACAGATAAGATAGGCATTAATG 57.112 33.333 11.27 11.27 34.43 1.90
147 148 9.716531 CAATCAGACAGATAAGATAGGCATTAA 57.283 33.333 0.00 0.00 35.39 1.40
148 149 8.316946 CCAATCAGACAGATAAGATAGGCATTA 58.683 37.037 0.00 0.00 35.39 1.90
149 150 7.016957 TCCAATCAGACAGATAAGATAGGCATT 59.983 37.037 0.00 0.00 35.39 3.56
169 170 9.396022 TGAAATACTCCTAACAAGAATCCAATC 57.604 33.333 0.00 0.00 0.00 2.67
185 346 3.129287 CCATGCCAACTGTGAAATACTCC 59.871 47.826 0.00 0.00 0.00 3.85
186 347 3.428045 GCCATGCCAACTGTGAAATACTC 60.428 47.826 0.00 0.00 0.00 2.59
187 348 2.493278 GCCATGCCAACTGTGAAATACT 59.507 45.455 0.00 0.00 0.00 2.12
188 349 2.731968 CGCCATGCCAACTGTGAAATAC 60.732 50.000 0.00 0.00 0.00 1.89
189 350 1.472082 CGCCATGCCAACTGTGAAATA 59.528 47.619 0.00 0.00 0.00 1.40
190 351 0.244450 CGCCATGCCAACTGTGAAAT 59.756 50.000 0.00 0.00 0.00 2.17
191 352 0.821301 TCGCCATGCCAACTGTGAAA 60.821 50.000 0.00 0.00 0.00 2.69
192 353 0.821301 TTCGCCATGCCAACTGTGAA 60.821 50.000 0.00 0.00 0.00 3.18
194 355 1.093972 TATTCGCCATGCCAACTGTG 58.906 50.000 0.00 0.00 0.00 3.66
195 356 2.057137 ATATTCGCCATGCCAACTGT 57.943 45.000 0.00 0.00 0.00 3.55
196 357 3.441496 AAATATTCGCCATGCCAACTG 57.559 42.857 0.00 0.00 0.00 3.16
197 358 4.644685 AGTAAAATATTCGCCATGCCAACT 59.355 37.500 0.00 0.00 0.00 3.16
198 359 4.932146 AGTAAAATATTCGCCATGCCAAC 58.068 39.130 0.00 0.00 0.00 3.77
226 387 5.988561 TGATGAAAGTTTTAGCGGCAAAAAT 59.011 32.000 1.45 3.95 0.00 1.82
227 388 5.233263 GTGATGAAAGTTTTAGCGGCAAAAA 59.767 36.000 1.45 0.00 0.00 1.94
233 394 5.108385 ACAAGTGATGAAAGTTTTAGCGG 57.892 39.130 0.00 0.00 0.00 5.52
261 422 8.034804 GGTTGGATTTTGTTGTGATTATAGCTT 58.965 33.333 0.00 0.00 0.00 3.74
262 423 7.178274 TGGTTGGATTTTGTTGTGATTATAGCT 59.822 33.333 0.00 0.00 0.00 3.32
263 424 7.319646 TGGTTGGATTTTGTTGTGATTATAGC 58.680 34.615 0.00 0.00 0.00 2.97
264 425 9.703892 TTTGGTTGGATTTTGTTGTGATTATAG 57.296 29.630 0.00 0.00 0.00 1.31
288 449 5.596772 TGGATTTTCTTTTCCGGAGAAGTTT 59.403 36.000 28.38 14.97 34.84 2.66
298 459 7.952671 AGAAGTTAGGTTGGATTTTCTTTTCC 58.047 34.615 0.00 0.00 0.00 3.13
300 461 8.414003 GTGAGAAGTTAGGTTGGATTTTCTTTT 58.586 33.333 0.00 0.00 0.00 2.27
304 465 5.699458 TCGTGAGAAGTTAGGTTGGATTTTC 59.301 40.000 0.00 0.00 37.03 2.29
328 491 3.826729 GGTAACCAAGGACTGCAAGATTT 59.173 43.478 0.00 0.00 37.43 2.17
375 538 6.382608 GTTAAAGTTTCATCAGGAGGAAAGC 58.617 40.000 9.14 5.48 41.03 3.51
379 542 5.073144 ACAGGTTAAAGTTTCATCAGGAGGA 59.927 40.000 0.00 0.00 0.00 3.71
382 545 5.935945 TCACAGGTTAAAGTTTCATCAGGA 58.064 37.500 0.00 0.00 0.00 3.86
383 546 6.349611 CCATCACAGGTTAAAGTTTCATCAGG 60.350 42.308 0.00 0.00 0.00 3.86
384 547 6.430925 TCCATCACAGGTTAAAGTTTCATCAG 59.569 38.462 0.00 0.00 0.00 2.90
387 550 6.721208 ACATCCATCACAGGTTAAAGTTTCAT 59.279 34.615 0.00 0.00 0.00 2.57
457 638 1.617018 TAAGTCTGCCCAGCGATGCT 61.617 55.000 0.00 0.00 40.77 3.79
462 643 1.079503 GAAGTTAAGTCTGCCCAGCG 58.920 55.000 0.00 0.00 0.00 5.18
536 717 2.190161 TCGATGCGGTCACGATAAAAG 58.810 47.619 0.00 0.00 44.60 2.27
537 718 2.281140 TCGATGCGGTCACGATAAAA 57.719 45.000 0.00 0.00 44.60 1.52
538 719 2.034179 AGATCGATGCGGTCACGATAAA 59.966 45.455 0.54 0.00 44.73 1.40
539 720 1.607148 AGATCGATGCGGTCACGATAA 59.393 47.619 0.54 0.00 44.73 1.75
540 721 1.197036 GAGATCGATGCGGTCACGATA 59.803 52.381 0.54 0.00 44.73 2.92
787 982 2.124653 ACACGACCCGCCAAAACA 60.125 55.556 0.00 0.00 0.00 2.83
1008 1203 3.488423 AGGCTGTCCCACCTCTTG 58.512 61.111 0.00 0.00 35.39 3.02
1018 1213 2.179517 CCACGAGTCGAGGCTGTC 59.820 66.667 21.50 0.00 30.30 3.51
1129 1324 1.005394 ACGCGAACTTGTTCCCGAT 60.005 52.632 22.01 8.10 0.00 4.18
1401 1596 0.396001 AGAGCGAGTAGGGGTCCTTC 60.396 60.000 0.00 0.00 34.61 3.46
1542 1737 1.006571 GAAGTCGGCGACCTTGACA 60.007 57.895 34.04 0.00 35.09 3.58
2004 2199 4.729856 GACGGCGGCGTAACCAGT 62.730 66.667 37.57 13.25 39.03 4.00
2133 2538 4.811024 TCAGATTGCTAATTAGTTCCGCAG 59.189 41.667 13.91 0.55 31.63 5.18
2143 2861 8.948631 TCGTTCTAAGAATCAGATTGCTAATT 57.051 30.769 0.00 0.00 0.00 1.40
2144 2862 9.202273 GATCGTTCTAAGAATCAGATTGCTAAT 57.798 33.333 0.00 0.00 0.00 1.73
2145 2863 8.197439 TGATCGTTCTAAGAATCAGATTGCTAA 58.803 33.333 0.00 0.00 0.00 3.09
2146 2864 7.649705 GTGATCGTTCTAAGAATCAGATTGCTA 59.350 37.037 0.00 0.00 0.00 3.49
2147 2865 6.478344 GTGATCGTTCTAAGAATCAGATTGCT 59.522 38.462 0.00 0.00 0.00 3.91
2148 2866 6.292596 GGTGATCGTTCTAAGAATCAGATTGC 60.293 42.308 0.00 0.00 0.00 3.56
2149 2867 6.983307 AGGTGATCGTTCTAAGAATCAGATTG 59.017 38.462 0.00 0.00 0.00 2.67
2150 2868 6.983307 CAGGTGATCGTTCTAAGAATCAGATT 59.017 38.462 0.00 0.00 0.00 2.40
2151 2869 6.511416 CAGGTGATCGTTCTAAGAATCAGAT 58.489 40.000 0.00 0.00 0.00 2.90
2152 2870 5.679894 GCAGGTGATCGTTCTAAGAATCAGA 60.680 44.000 0.00 0.00 0.00 3.27
2153 2871 4.505922 GCAGGTGATCGTTCTAAGAATCAG 59.494 45.833 0.00 0.00 0.00 2.90
2154 2872 4.433615 GCAGGTGATCGTTCTAAGAATCA 58.566 43.478 0.00 0.00 0.00 2.57
2155 2873 3.487574 CGCAGGTGATCGTTCTAAGAATC 59.512 47.826 0.00 0.00 0.00 2.52
2156 2874 3.448686 CGCAGGTGATCGTTCTAAGAAT 58.551 45.455 0.00 0.00 0.00 2.40
2157 2875 2.876091 CGCAGGTGATCGTTCTAAGAA 58.124 47.619 0.00 0.00 0.00 2.52
2158 2876 1.469251 GCGCAGGTGATCGTTCTAAGA 60.469 52.381 0.30 0.00 0.00 2.10
2159 2877 0.924090 GCGCAGGTGATCGTTCTAAG 59.076 55.000 0.30 0.00 0.00 2.18
2160 2878 0.459585 GGCGCAGGTGATCGTTCTAA 60.460 55.000 10.83 0.00 0.00 2.10
2161 2879 1.141019 GGCGCAGGTGATCGTTCTA 59.859 57.895 10.83 0.00 0.00 2.10
2162 2880 2.125512 GGCGCAGGTGATCGTTCT 60.126 61.111 10.83 0.00 0.00 3.01
2163 2881 3.554692 CGGCGCAGGTGATCGTTC 61.555 66.667 10.83 0.00 0.00 3.95
2173 2891 4.451150 TCAGTTAGGCCGGCGCAG 62.451 66.667 22.54 4.65 36.38 5.18
2174 2892 4.752879 GTCAGTTAGGCCGGCGCA 62.753 66.667 22.54 7.56 36.38 6.09
2175 2893 4.752879 TGTCAGTTAGGCCGGCGC 62.753 66.667 22.54 13.90 0.00 6.53
2176 2894 2.813908 GTGTCAGTTAGGCCGGCG 60.814 66.667 22.54 5.20 0.00 6.46
2177 2895 2.436115 GGTGTCAGTTAGGCCGGC 60.436 66.667 21.18 21.18 0.00 6.13
2178 2896 2.125673 CGGTGTCAGTTAGGCCGG 60.126 66.667 0.00 0.00 38.86 6.13
2179 2897 2.813908 GCGGTGTCAGTTAGGCCG 60.814 66.667 0.00 0.00 44.60 6.13
2180 2898 2.436115 GGCGGTGTCAGTTAGGCC 60.436 66.667 0.00 0.00 0.00 5.19
2181 2899 1.448013 GAGGCGGTGTCAGTTAGGC 60.448 63.158 0.00 0.00 0.00 3.93
2182 2900 1.153823 CGAGGCGGTGTCAGTTAGG 60.154 63.158 0.00 0.00 0.00 2.69
2183 2901 1.805945 GCGAGGCGGTGTCAGTTAG 60.806 63.158 0.00 0.00 0.00 2.34
2184 2902 2.260434 GCGAGGCGGTGTCAGTTA 59.740 61.111 0.00 0.00 0.00 2.24
2185 2903 3.616721 AGCGAGGCGGTGTCAGTT 61.617 61.111 0.00 0.00 35.85 3.16
2196 2914 4.504916 CTGACCGGAGCAGCGAGG 62.505 72.222 9.46 2.80 0.00 4.63
2197 2915 3.691744 GACTGACCGGAGCAGCGAG 62.692 68.421 22.80 6.72 36.86 5.03
2198 2916 3.749064 GACTGACCGGAGCAGCGA 61.749 66.667 22.80 0.00 36.86 4.93
2207 2925 2.049433 GGTGTGACCGACTGACCG 60.049 66.667 0.00 0.00 0.00 4.79
2208 2926 1.179814 AGAGGTGTGACCGACTGACC 61.180 60.000 0.00 0.00 44.90 4.02
2209 2927 0.039074 CAGAGGTGTGACCGACTGAC 60.039 60.000 13.78 0.00 44.90 3.51
2210 2928 0.179001 TCAGAGGTGTGACCGACTGA 60.179 55.000 16.14 16.14 45.89 3.41
2211 2929 0.242286 CTCAGAGGTGTGACCGACTG 59.758 60.000 13.18 13.18 44.90 3.51
2212 2930 1.528292 GCTCAGAGGTGTGACCGACT 61.528 60.000 0.00 0.00 44.90 4.18
2213 2931 1.080434 GCTCAGAGGTGTGACCGAC 60.080 63.158 0.00 0.00 44.90 4.79
2214 2932 1.228583 AGCTCAGAGGTGTGACCGA 60.229 57.895 0.00 0.00 44.90 4.69
2215 2933 1.080230 CAGCTCAGAGGTGTGACCG 60.080 63.158 19.84 0.00 44.90 4.79
2216 2934 1.375268 GCAGCTCAGAGGTGTGACC 60.375 63.158 26.66 9.80 44.96 4.02
2217 2935 4.275524 GCAGCTCAGAGGTGTGAC 57.724 61.111 26.66 10.13 44.96 3.67
2242 2960 3.127533 GTGGGGTGTCGCTGATGC 61.128 66.667 0.00 0.00 0.00 3.91
2243 2961 2.436646 GGTGGGGTGTCGCTGATG 60.437 66.667 0.00 0.00 0.00 3.07
2244 2962 3.717294 GGGTGGGGTGTCGCTGAT 61.717 66.667 0.00 0.00 0.00 2.90
2248 2966 3.728279 GATACGGGTGGGGTGTCGC 62.728 68.421 0.00 0.00 0.00 5.19
2249 2967 1.682451 ATGATACGGGTGGGGTGTCG 61.682 60.000 0.00 0.00 0.00 4.35
2250 2968 0.106149 GATGATACGGGTGGGGTGTC 59.894 60.000 0.00 0.00 0.00 3.67
2251 2969 1.682451 CGATGATACGGGTGGGGTGT 61.682 60.000 0.00 0.00 0.00 4.16
2252 2970 1.069090 CGATGATACGGGTGGGGTG 59.931 63.158 0.00 0.00 0.00 4.61
2253 2971 1.075822 TCGATGATACGGGTGGGGT 60.076 57.895 0.00 0.00 0.00 4.95
2254 2972 1.366366 GTCGATGATACGGGTGGGG 59.634 63.158 0.00 0.00 0.00 4.96
2255 2973 1.366366 GGTCGATGATACGGGTGGG 59.634 63.158 0.00 0.00 0.00 4.61
2256 2974 1.007734 CGGTCGATGATACGGGTGG 60.008 63.158 0.00 0.00 0.00 4.61
2257 2975 1.660575 GCGGTCGATGATACGGGTG 60.661 63.158 0.00 0.00 0.00 4.61
2258 2976 2.726274 GCGGTCGATGATACGGGT 59.274 61.111 0.00 0.00 0.00 5.28
2259 2977 2.049433 GGCGGTCGATGATACGGG 60.049 66.667 0.00 0.00 0.00 5.28
2260 2978 2.049433 GGGCGGTCGATGATACGG 60.049 66.667 0.00 0.00 0.00 4.02
2261 2979 2.428569 CGGGCGGTCGATGATACG 60.429 66.667 0.00 0.00 0.00 3.06
2262 2980 1.371389 GACGGGCGGTCGATGATAC 60.371 63.158 9.54 0.00 35.61 2.24
2263 2981 3.036577 GACGGGCGGTCGATGATA 58.963 61.111 9.54 0.00 35.61 2.15
2270 2988 4.603946 GGCATAGGACGGGCGGTC 62.604 72.222 16.08 16.08 45.31 4.79
2322 3040 1.003331 CGCACAGAGATAGACGGAGAC 60.003 57.143 0.00 0.00 0.00 3.36
2323 3041 1.134491 TCGCACAGAGATAGACGGAGA 60.134 52.381 0.00 0.00 0.00 3.71
2324 3042 1.300481 TCGCACAGAGATAGACGGAG 58.700 55.000 0.00 0.00 0.00 4.63
2325 3043 1.671328 CTTCGCACAGAGATAGACGGA 59.329 52.381 0.00 0.00 0.00 4.69
2326 3044 1.862008 GCTTCGCACAGAGATAGACGG 60.862 57.143 0.00 0.00 0.00 4.79
2327 3045 1.202188 TGCTTCGCACAGAGATAGACG 60.202 52.381 0.00 0.00 31.71 4.18
2328 3046 2.568696 TGCTTCGCACAGAGATAGAC 57.431 50.000 0.00 0.00 31.71 2.59
2329 3047 3.592898 TTTGCTTCGCACAGAGATAGA 57.407 42.857 0.00 0.00 38.71 1.98
2330 3048 3.867493 TGATTTGCTTCGCACAGAGATAG 59.133 43.478 0.00 0.00 38.71 2.08
2331 3049 3.860641 TGATTTGCTTCGCACAGAGATA 58.139 40.909 0.00 0.00 38.71 1.98
2332 3050 2.703416 TGATTTGCTTCGCACAGAGAT 58.297 42.857 0.00 0.00 38.71 2.75
2333 3051 2.168326 TGATTTGCTTCGCACAGAGA 57.832 45.000 0.00 0.00 38.71 3.10
2334 3052 2.225019 AGTTGATTTGCTTCGCACAGAG 59.775 45.455 0.00 0.00 38.71 3.35
2335 3053 2.031769 CAGTTGATTTGCTTCGCACAGA 60.032 45.455 0.00 0.00 38.71 3.41
2336 3054 2.031769 TCAGTTGATTTGCTTCGCACAG 60.032 45.455 0.00 0.00 38.71 3.66
2337 3055 1.946081 TCAGTTGATTTGCTTCGCACA 59.054 42.857 0.00 0.00 38.71 4.57
2338 3056 2.286950 TGTCAGTTGATTTGCTTCGCAC 60.287 45.455 0.00 0.00 38.71 5.34
2339 3057 1.946081 TGTCAGTTGATTTGCTTCGCA 59.054 42.857 0.00 0.00 36.47 5.10
2340 3058 2.310577 GTGTCAGTTGATTTGCTTCGC 58.689 47.619 0.00 0.00 0.00 4.70
2341 3059 2.563976 CGTGTCAGTTGATTTGCTTCG 58.436 47.619 0.00 0.00 0.00 3.79
2342 3060 2.286950 TGCGTGTCAGTTGATTTGCTTC 60.287 45.455 0.00 0.00 0.00 3.86
2343 3061 1.675483 TGCGTGTCAGTTGATTTGCTT 59.325 42.857 0.00 0.00 0.00 3.91
2344 3062 1.308047 TGCGTGTCAGTTGATTTGCT 58.692 45.000 0.00 0.00 0.00 3.91
2345 3063 2.118228 TTGCGTGTCAGTTGATTTGC 57.882 45.000 0.00 0.00 0.00 3.68
2346 3064 5.640218 AAATTTGCGTGTCAGTTGATTTG 57.360 34.783 0.00 0.00 0.00 2.32
2347 3065 7.945033 AATAAATTTGCGTGTCAGTTGATTT 57.055 28.000 0.00 0.00 0.00 2.17
2348 3066 7.867403 AGAAATAAATTTGCGTGTCAGTTGATT 59.133 29.630 0.00 0.00 0.00 2.57
2349 3067 7.326789 CAGAAATAAATTTGCGTGTCAGTTGAT 59.673 33.333 0.00 0.00 0.00 2.57
2350 3068 6.636447 CAGAAATAAATTTGCGTGTCAGTTGA 59.364 34.615 0.00 0.00 0.00 3.18
2351 3069 6.417635 ACAGAAATAAATTTGCGTGTCAGTTG 59.582 34.615 0.00 0.00 0.00 3.16
2352 3070 6.503524 ACAGAAATAAATTTGCGTGTCAGTT 58.496 32.000 0.00 0.00 0.00 3.16
2353 3071 6.072112 ACAGAAATAAATTTGCGTGTCAGT 57.928 33.333 0.00 0.00 0.00 3.41
2354 3072 6.614162 GCAACAGAAATAAATTTGCGTGTCAG 60.614 38.462 0.00 0.00 33.80 3.51
2355 3073 5.174761 GCAACAGAAATAAATTTGCGTGTCA 59.825 36.000 0.00 0.00 33.80 3.58
2362 3080 7.712264 TTCACAGGCAACAGAAATAAATTTG 57.288 32.000 0.00 0.00 41.41 2.32
2374 3092 0.878416 GCCGTAATTCACAGGCAACA 59.122 50.000 0.00 0.00 42.66 3.33
2476 3194 5.625721 GGTAACTTCATCATCTCGTATCGTG 59.374 44.000 0.00 0.00 0.00 4.35
2511 3230 4.098807 TGTGAACCGATTATCTTGGATCGA 59.901 41.667 7.25 0.00 45.90 3.59
2529 3248 2.866010 CGCGTGCGTTCTGTGTGAA 61.866 57.895 6.00 0.00 34.35 3.18
2552 3271 5.724370 TCTTCCTATGTTCTCCATTGGTACA 59.276 40.000 1.86 6.56 44.14 2.90
2553 3272 6.235231 TCTTCCTATGTTCTCCATTGGTAC 57.765 41.667 1.86 1.00 44.14 3.34
2561 3280 4.145807 TCTCGGATCTTCCTATGTTCTCC 58.854 47.826 0.00 0.00 33.30 3.71
2633 3352 2.975732 TAGCGTCGTTCTCTCTCCTA 57.024 50.000 0.00 0.00 0.00 2.94
2660 3379 0.741915 GGTGAAAACCTTGGCAACGA 59.258 50.000 0.00 0.00 42.51 3.85
2663 3382 0.395862 TCGGGTGAAAACCTTGGCAA 60.396 50.000 0.00 0.00 0.00 4.52
2702 3427 2.900716 TGAAGACGTTGTGGTGATGA 57.099 45.000 0.00 0.00 0.00 2.92
2787 3512 0.823356 TTGCCTTGGAGACCTTGTGC 60.823 55.000 0.00 0.00 0.00 4.57
2791 3516 0.538287 GTGCTTGCCTTGGAGACCTT 60.538 55.000 0.00 0.00 0.00 3.50
2801 3526 0.530744 TAATCTCGTCGTGCTTGCCT 59.469 50.000 0.00 0.00 0.00 4.75
2898 3623 2.654877 CTTAGTCGCGTGGGTGGT 59.345 61.111 5.77 0.00 0.00 4.16
2912 3637 1.134907 GCGACGATGTCTTTCCCCTTA 60.135 52.381 0.00 0.00 0.00 2.69
2938 3666 4.074526 GCTCTCTGGCAGGCGTCA 62.075 66.667 15.73 0.00 0.00 4.35
2939 3667 4.828925 GGCTCTCTGGCAGGCGTC 62.829 72.222 15.73 0.91 41.37 5.19
2987 3715 2.674754 GGACCTTGAATGCCGGGA 59.325 61.111 2.18 0.00 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.