Multiple sequence alignment - TraesCS6B01G199900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G199900 chr6B 100.000 3925 0 0 1 3925 239734399 239738323 0.000000e+00 7249.0
1 TraesCS6B01G199900 chr6A 89.516 1488 85 32 399 1841 183194256 183195717 0.000000e+00 1818.0
2 TraesCS6B01G199900 chr6A 94.475 923 33 7 1894 2807 183201367 183202280 0.000000e+00 1406.0
3 TraesCS6B01G199900 chr6A 92.917 240 15 2 3282 3519 183214193 183214432 8.070000e-92 348.0
4 TraesCS6B01G199900 chr6A 97.203 143 3 1 2985 3126 183202471 183202613 1.410000e-59 241.0
5 TraesCS6B01G199900 chr6A 83.146 267 28 4 93 354 183194008 183194262 1.100000e-55 228.0
6 TraesCS6B01G199900 chr6A 90.385 104 0 4 2836 2939 183202362 183202455 1.140000e-25 128.0
7 TraesCS6B01G199900 chr6A 92.771 83 6 0 3139 3221 183202594 183202676 1.920000e-23 121.0
8 TraesCS6B01G199900 chr6D 92.411 1265 64 15 409 1646 139931901 139933160 0.000000e+00 1775.0
9 TraesCS6B01G199900 chr6D 94.118 918 25 11 2234 3126 139933750 139934663 0.000000e+00 1369.0
10 TraesCS6B01G199900 chr6D 89.822 619 26 13 1679 2281 139933161 139933758 0.000000e+00 760.0
11 TraesCS6B01G199900 chr6D 90.691 376 26 5 3139 3511 139934642 139935011 3.520000e-135 492.0
12 TraesCS6B01G199900 chr6D 94.686 207 9 2 1 207 139921600 139921804 1.760000e-83 320.0
13 TraesCS6B01G199900 chr6D 91.534 189 15 1 3706 3893 139979725 139979913 3.890000e-65 259.0
14 TraesCS6B01G199900 chr6D 94.048 168 10 0 222 389 139931746 139931913 5.030000e-64 255.0
15 TraesCS6B01G199900 chr2D 100.000 30 0 0 3662 3691 359634878 359634907 5.480000e-04 56.5
16 TraesCS6B01G199900 chr2A 100.000 30 0 0 3662 3691 482699444 482699415 5.480000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G199900 chr6B 239734399 239738323 3924 False 7249.0 7249 100.0000 1 3925 1 chr6B.!!$F1 3924
1 TraesCS6B01G199900 chr6A 183194008 183195717 1709 False 1023.0 1818 86.3310 93 1841 2 chr6A.!!$F2 1748
2 TraesCS6B01G199900 chr6A 183201367 183202676 1309 False 474.0 1406 93.7085 1894 3221 4 chr6A.!!$F3 1327
3 TraesCS6B01G199900 chr6D 139931746 139935011 3265 False 930.2 1775 92.2180 222 3511 5 chr6D.!!$F3 3289

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.109412 CGGTTCGCTTACGTCTTCCT 60.109 55.0 0.00 0.00 41.18 3.36 F
539 547 0.323360 TTTAAGAAGCGGCCATGGCT 60.323 50.0 34.70 16.75 44.02 4.75 F
827 835 0.625849 CATAAGAACCACCCTGCCCT 59.374 55.0 0.00 0.00 0.00 5.19 F
828 836 0.625849 ATAAGAACCACCCTGCCCTG 59.374 55.0 0.00 0.00 0.00 4.45 F
1439 1492 0.743688 TCTCATCCTCGAGCAGAAGC 59.256 55.0 6.99 0.00 42.56 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1307 1357 0.729116 CTGCTGCCTAACAATGACCG 59.271 55.000 0.00 0.00 0.00 4.79 R
1467 1520 1.073763 TCCCAAGCAAAGCTAAGCTCA 59.926 47.619 12.62 0.00 40.90 4.26 R
1651 1716 1.210478 ACCAACACCATGCTAGGCTAG 59.790 52.381 17.33 17.33 0.00 3.42 R
1654 1719 1.256812 AAACCAACACCATGCTAGGC 58.743 50.000 0.00 0.00 0.00 3.93 R
2961 3155 0.098376 GAGATCAAAAGCAGCAGCCG 59.902 55.000 0.00 0.00 43.56 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.953466 CTGCTGCCTTGCACATAAAT 57.047 45.000 0.00 0.00 38.12 1.40
20 21 3.241067 CTGCTGCCTTGCACATAAATT 57.759 42.857 0.00 0.00 38.12 1.82
21 22 3.592059 CTGCTGCCTTGCACATAAATTT 58.408 40.909 0.00 0.00 38.12 1.82
22 23 3.587923 TGCTGCCTTGCACATAAATTTC 58.412 40.909 0.00 0.00 38.12 2.17
23 24 3.258872 TGCTGCCTTGCACATAAATTTCT 59.741 39.130 0.00 0.00 38.12 2.52
24 25 3.615496 GCTGCCTTGCACATAAATTTCTG 59.385 43.478 0.00 0.00 33.79 3.02
25 26 4.178540 CTGCCTTGCACATAAATTTCTGG 58.821 43.478 8.28 0.00 33.79 3.86
26 27 3.055963 TGCCTTGCACATAAATTTCTGGG 60.056 43.478 8.28 5.11 31.71 4.45
27 28 3.524541 CCTTGCACATAAATTTCTGGGC 58.475 45.455 20.61 20.61 42.22 5.36
28 29 2.937469 TGCACATAAATTTCTGGGCG 57.063 45.000 21.54 6.08 44.86 6.13
29 30 1.476085 TGCACATAAATTTCTGGGCGG 59.524 47.619 21.54 4.93 44.86 6.13
30 31 1.476488 GCACATAAATTTCTGGGCGGT 59.524 47.619 14.18 0.00 31.13 5.68
31 32 2.094234 GCACATAAATTTCTGGGCGGTT 60.094 45.455 14.18 0.00 31.13 4.44
32 33 3.769536 CACATAAATTTCTGGGCGGTTC 58.230 45.455 8.28 0.00 0.00 3.62
33 34 2.422127 ACATAAATTTCTGGGCGGTTCG 59.578 45.455 8.28 0.00 0.00 3.95
45 46 2.356794 CGGTTCGCTTACGTCTTCC 58.643 57.895 0.00 0.00 41.18 3.46
46 47 0.109412 CGGTTCGCTTACGTCTTCCT 60.109 55.000 0.00 0.00 41.18 3.36
47 48 1.668047 CGGTTCGCTTACGTCTTCCTT 60.668 52.381 0.00 0.00 41.18 3.36
48 49 2.410939 GGTTCGCTTACGTCTTCCTTT 58.589 47.619 0.00 0.00 41.18 3.11
49 50 2.804527 GGTTCGCTTACGTCTTCCTTTT 59.195 45.455 0.00 0.00 41.18 2.27
50 51 3.249320 GGTTCGCTTACGTCTTCCTTTTT 59.751 43.478 0.00 0.00 41.18 1.94
74 75 5.828299 TTTTGGCTTGCTAATAATACGCT 57.172 34.783 0.00 0.00 0.00 5.07
75 76 4.811555 TTGGCTTGCTAATAATACGCTG 57.188 40.909 0.00 0.00 0.00 5.18
76 77 2.548057 TGGCTTGCTAATAATACGCTGC 59.452 45.455 0.00 0.00 0.00 5.25
77 78 2.548057 GGCTTGCTAATAATACGCTGCA 59.452 45.455 0.00 0.00 0.00 4.41
78 79 3.003275 GGCTTGCTAATAATACGCTGCAA 59.997 43.478 0.00 0.00 37.96 4.08
80 81 5.409643 CTTGCTAATAATACGCTGCAAGT 57.590 39.130 14.83 0.00 46.80 3.16
81 82 6.525121 CTTGCTAATAATACGCTGCAAGTA 57.475 37.500 14.83 4.45 46.80 2.24
82 83 7.121974 CTTGCTAATAATACGCTGCAAGTAT 57.878 36.000 14.83 8.26 46.80 2.12
83 84 8.239681 CTTGCTAATAATACGCTGCAAGTATA 57.760 34.615 14.83 5.00 46.80 1.47
84 85 8.596271 TTGCTAATAATACGCTGCAAGTATAA 57.404 30.769 12.99 2.49 35.83 0.98
85 86 8.771920 TGCTAATAATACGCTGCAAGTATAAT 57.228 30.769 12.99 4.06 34.05 1.28
86 87 8.655970 TGCTAATAATACGCTGCAAGTATAATG 58.344 33.333 12.99 5.87 34.05 1.90
87 88 7.636359 GCTAATAATACGCTGCAAGTATAATGC 59.364 37.037 12.99 5.10 44.08 3.56
88 89 4.389664 AATACGCTGCAAGTATAATGCG 57.610 40.909 12.99 11.90 46.76 4.73
90 91 2.009229 CGCTGCAAGTATAATGCGTG 57.991 50.000 0.00 5.51 46.76 5.34
91 92 1.746760 GCTGCAAGTATAATGCGTGC 58.253 50.000 0.00 11.11 46.76 5.34
96 97 3.935828 TGCAAGTATAATGCGTGCTGTTA 59.064 39.130 10.42 0.00 46.76 2.41
123 124 3.692257 AGTCATGTCCTGAGGAAGTTG 57.308 47.619 0.96 1.20 33.51 3.16
129 130 2.303022 TGTCCTGAGGAAGTTGTGATCC 59.697 50.000 0.96 0.00 31.38 3.36
142 143 7.337942 GGAAGTTGTGATCCATCTAATTCTTGT 59.662 37.037 0.00 0.00 35.71 3.16
145 146 6.566079 TGTGATCCATCTAATTCTTGTCCT 57.434 37.500 0.00 0.00 0.00 3.85
166 167 1.734465 CATTCGTCCTTTCTCCACAGC 59.266 52.381 0.00 0.00 0.00 4.40
170 171 1.517242 GTCCTTTCTCCACAGCAGTG 58.483 55.000 1.56 1.56 45.47 3.66
182 183 4.268687 GCAGTGAGCAAGCTACGT 57.731 55.556 0.00 0.00 44.79 3.57
189 190 0.796927 GAGCAAGCTACGTTTGGTCC 59.203 55.000 16.20 3.11 42.41 4.46
220 221 5.048083 TCAATTCCATCTACCACAAACTTGC 60.048 40.000 0.00 0.00 0.00 4.01
357 363 2.540101 GGAACAACTCAACAGAGACACG 59.460 50.000 0.00 0.00 33.55 4.49
361 367 3.804325 ACAACTCAACAGAGACACGATTG 59.196 43.478 0.00 0.00 33.55 2.67
364 370 4.547532 ACTCAACAGAGACACGATTGTAC 58.452 43.478 0.00 0.00 35.47 2.90
373 379 7.067129 ACAGAGACACGATTGTACACATACTAT 59.933 37.037 0.00 0.00 35.47 2.12
376 382 9.167239 GAGACACGATTGTACACATACTATTAC 57.833 37.037 0.00 0.00 35.47 1.89
377 383 8.680001 AGACACGATTGTACACATACTATTACA 58.320 33.333 0.00 0.00 35.47 2.41
378 384 9.292846 GACACGATTGTACACATACTATTACAA 57.707 33.333 0.00 0.00 38.46 2.41
379 385 9.811995 ACACGATTGTACACATACTATTACAAT 57.188 29.630 0.00 5.70 44.20 2.71
446 452 1.995484 CGTATGGCTAGATGATTGCGG 59.005 52.381 0.00 0.00 0.00 5.69
539 547 0.323360 TTTAAGAAGCGGCCATGGCT 60.323 50.000 34.70 16.75 44.02 4.75
648 656 1.072965 CCTCCTTGCTTTCCAGTGTCT 59.927 52.381 0.00 0.00 0.00 3.41
666 674 2.678336 GTCTCCCTCCATAAAAAGCACG 59.322 50.000 0.00 0.00 0.00 5.34
720 728 3.418068 GTCGCCTCACAGCTGTGC 61.418 66.667 36.76 26.09 45.25 4.57
743 751 1.670380 GCTGTCCCGTGAACTCTTCTC 60.670 57.143 0.00 0.00 0.00 2.87
747 755 2.559231 GTCCCGTGAACTCTTCTCTTCT 59.441 50.000 0.00 0.00 0.00 2.85
752 760 3.183373 CGTGAACTCTTCTCTTCTGTTGC 59.817 47.826 0.00 0.00 0.00 4.17
827 835 0.625849 CATAAGAACCACCCTGCCCT 59.374 55.000 0.00 0.00 0.00 5.19
828 836 0.625849 ATAAGAACCACCCTGCCCTG 59.374 55.000 0.00 0.00 0.00 4.45
829 837 2.137177 TAAGAACCACCCTGCCCTGC 62.137 60.000 0.00 0.00 0.00 4.85
840 848 4.783621 GCCCTGCGAGCACATCCA 62.784 66.667 0.00 0.00 0.00 3.41
841 849 2.191375 CCCTGCGAGCACATCCAT 59.809 61.111 0.00 0.00 0.00 3.41
854 864 2.150051 ATCCATCGCCTCCCTTCCC 61.150 63.158 0.00 0.00 0.00 3.97
855 865 2.914734 ATCCATCGCCTCCCTTCCCA 62.915 60.000 0.00 0.00 0.00 4.37
857 867 2.285368 ATCGCCTCCCTTCCCACA 60.285 61.111 0.00 0.00 0.00 4.17
880 890 2.092321 CCTCTCTCCTCCTCGTTTCCTA 60.092 54.545 0.00 0.00 0.00 2.94
899 909 4.338400 TCCTATCGTCAATTGTGATCGAGT 59.662 41.667 15.79 9.96 39.18 4.18
917 927 1.101049 GTGGGGAGCGAGAGAGAGAG 61.101 65.000 0.00 0.00 0.00 3.20
928 938 3.118775 CGAGAGAGAGAGAGAAGAGTGGA 60.119 52.174 0.00 0.00 0.00 4.02
947 957 2.761208 GGAGAGGAGAAACAAGGATCGA 59.239 50.000 0.00 0.00 0.00 3.59
1017 1042 3.635373 TCTTAATGGCCGTGAGTACCTAG 59.365 47.826 0.00 0.00 0.00 3.02
1018 1043 1.861982 AATGGCCGTGAGTACCTAGT 58.138 50.000 0.00 0.00 0.00 2.57
1019 1044 2.742428 ATGGCCGTGAGTACCTAGTA 57.258 50.000 0.00 0.00 0.00 1.82
1033 1062 7.279536 TGAGTACCTAGTATCTCACTACGTTTG 59.720 40.741 0.00 0.00 38.80 2.93
1072 1101 4.377897 GTTACCGATGCTTTACTGCCTAT 58.622 43.478 0.00 0.00 0.00 2.57
1073 1102 5.510179 GGTTACCGATGCTTTACTGCCTATA 60.510 44.000 0.00 0.00 0.00 1.31
1075 1104 3.641906 ACCGATGCTTTACTGCCTATACT 59.358 43.478 0.00 0.00 0.00 2.12
1076 1105 4.238514 CCGATGCTTTACTGCCTATACTC 58.761 47.826 0.00 0.00 0.00 2.59
1077 1106 3.914966 CGATGCTTTACTGCCTATACTCG 59.085 47.826 0.00 0.00 0.00 4.18
1078 1107 3.728076 TGCTTTACTGCCTATACTCGG 57.272 47.619 0.00 0.00 0.00 4.63
1124 1165 0.953727 TTATGGCCGCTTGATCATGC 59.046 50.000 20.66 20.66 0.00 4.06
1137 1178 5.849081 GCTTGATCATGCATTTGTTTTGTTG 59.151 36.000 24.41 0.00 0.00 3.33
1185 1230 5.720239 GCGTTTGCATAATTGTGATCAATG 58.280 37.500 6.35 0.00 41.05 2.82
1189 1234 6.527057 TTGCATAATTGTGATCAATGGTGA 57.473 33.333 6.35 0.00 42.60 4.02
1199 1244 5.817296 TGTGATCAATGGTGAAGTAGTATGC 59.183 40.000 0.00 0.00 37.30 3.14
1307 1357 2.859806 GAGCATCAAGTTGGCAACACAC 60.860 50.000 30.17 13.88 41.19 3.82
1439 1492 0.743688 TCTCATCCTCGAGCAGAAGC 59.256 55.000 6.99 0.00 42.56 3.86
1467 1520 2.310052 CAGAATGGGGAAAAGGAGACCT 59.690 50.000 0.00 0.00 33.87 3.85
1511 1565 7.645340 GGATGGACGATTGATTGTTTAGAATTG 59.355 37.037 0.00 0.00 0.00 2.32
1581 1639 2.092103 TGCCAGGTCTAGTTTGGTGTTT 60.092 45.455 10.23 0.00 34.43 2.83
1726 1791 2.331132 GCTGGGAGCTTGCTGACAC 61.331 63.158 0.00 0.00 38.45 3.67
1728 1793 0.322277 CTGGGAGCTTGCTGACACAT 60.322 55.000 0.00 0.00 0.00 3.21
1730 1795 1.339055 TGGGAGCTTGCTGACACATAC 60.339 52.381 0.00 0.00 0.00 2.39
1731 1796 1.339055 GGGAGCTTGCTGACACATACA 60.339 52.381 0.00 0.00 0.00 2.29
1732 1797 2.636830 GGAGCTTGCTGACACATACAT 58.363 47.619 0.00 0.00 0.00 2.29
1733 1798 3.432186 GGGAGCTTGCTGACACATACATA 60.432 47.826 0.00 0.00 0.00 2.29
1736 1801 3.624861 AGCTTGCTGACACATACATAAGC 59.375 43.478 0.00 0.00 37.48 3.09
1739 1804 2.938451 TGCTGACACATACATAAGCTGC 59.062 45.455 0.00 0.00 0.00 5.25
1743 1808 3.878699 TGACACATACATAAGCTGCCATG 59.121 43.478 9.55 9.55 0.00 3.66
1769 1834 8.918116 GCCTAATTTTTCCTCCTCATCTTTAAT 58.082 33.333 0.00 0.00 0.00 1.40
1821 1886 2.489722 GGTTCCACCTGCTCTGAATTTC 59.510 50.000 0.00 0.00 34.73 2.17
1827 1892 3.372206 CACCTGCTCTGAATTTCTAACCG 59.628 47.826 0.00 0.00 0.00 4.44
1841 1906 2.165030 TCTAACCGACGAGGAAATGTCC 59.835 50.000 8.56 0.00 45.00 4.02
2214 2295 2.183555 GGTAACGTGCCCTCGAGG 59.816 66.667 25.36 25.36 39.47 4.63
2787 2928 2.359900 CCCAAGAAATCCTTCCTGTCG 58.640 52.381 0.00 0.00 31.42 4.35
2852 3046 3.243401 ACTTCCTGTTCACCGCATTTTTC 60.243 43.478 0.00 0.00 0.00 2.29
2960 3154 8.098286 TGGTTGATAATATTAACCCGACCATAG 58.902 37.037 19.97 0.00 45.45 2.23
2961 3155 7.065443 GGTTGATAATATTAACCCGACCATAGC 59.935 40.741 14.04 0.00 41.59 2.97
2980 3174 0.098376 CGGCTGCTGCTTTTGATCTC 59.902 55.000 15.64 0.00 39.59 2.75
3120 3315 6.035070 GCACTTGGCGTATACGTATTTTAA 57.965 37.500 25.04 11.06 42.22 1.52
3121 3316 6.124759 GCACTTGGCGTATACGTATTTTAAG 58.875 40.000 25.04 19.53 42.22 1.85
3122 3317 6.237915 GCACTTGGCGTATACGTATTTTAAGT 60.238 38.462 25.04 20.04 42.22 2.24
3123 3318 7.114920 CACTTGGCGTATACGTATTTTAAGTG 58.885 38.462 25.04 24.93 42.22 3.16
3124 3319 5.640218 TGGCGTATACGTATTTTAAGTGC 57.360 39.130 25.04 7.43 42.22 4.40
3125 3320 4.507388 TGGCGTATACGTATTTTAAGTGCC 59.493 41.667 25.04 15.40 42.22 5.01
3126 3321 4.084380 GGCGTATACGTATTTTAAGTGCCC 60.084 45.833 25.04 10.04 42.22 5.36
3127 3322 4.375305 GCGTATACGTATTTTAAGTGCCCG 60.375 45.833 25.04 0.00 42.22 6.13
3128 3323 4.375305 CGTATACGTATTTTAAGTGCCCGC 60.375 45.833 17.16 0.00 34.11 6.13
3129 3324 1.810959 ACGTATTTTAAGTGCCCGCA 58.189 45.000 0.00 0.00 0.00 5.69
3130 3325 2.152830 ACGTATTTTAAGTGCCCGCAA 58.847 42.857 0.00 0.00 0.00 4.85
3131 3326 2.553172 ACGTATTTTAAGTGCCCGCAAA 59.447 40.909 0.00 0.00 0.00 3.68
3132 3327 3.004524 ACGTATTTTAAGTGCCCGCAAAA 59.995 39.130 0.00 0.00 0.00 2.44
3133 3328 3.982058 CGTATTTTAAGTGCCCGCAAAAA 59.018 39.130 0.00 0.00 0.00 1.94
3213 3408 3.624326 TTTGAGACTTCCAAATGCGTG 57.376 42.857 0.00 0.00 0.00 5.34
3249 3444 9.784680 CGTGTGAGTACTAGAACTAATGTAATT 57.215 33.333 0.00 0.00 41.28 1.40
3271 3466 3.913089 TGATGCGTATGAGTGCGATAAT 58.087 40.909 0.00 0.00 35.29 1.28
3273 3468 3.363341 TGCGTATGAGTGCGATAATGA 57.637 42.857 0.00 0.00 35.29 2.57
3284 3479 7.366513 TGAGTGCGATAATGAATGAACAAAAA 58.633 30.769 0.00 0.00 0.00 1.94
3286 3481 7.592938 AGTGCGATAATGAATGAACAAAAAGA 58.407 30.769 0.00 0.00 0.00 2.52
3291 3486 9.558648 CGATAATGAATGAACAAAAAGATGTGA 57.441 29.630 0.00 0.00 32.81 3.58
3310 3505 3.730715 GTGATTGTTCTTTGTTTGGAGCG 59.269 43.478 0.00 0.00 0.00 5.03
3318 3513 3.311322 TCTTTGTTTGGAGCGTTACACAG 59.689 43.478 0.00 0.00 0.00 3.66
3325 3520 2.094390 TGGAGCGTTACACAGACCATAC 60.094 50.000 0.00 0.00 0.00 2.39
3329 3524 4.995124 AGCGTTACACAGACCATACTAAG 58.005 43.478 0.00 0.00 0.00 2.18
3411 3606 2.663826 ATCGGCTGAAGTGAGTTCTC 57.336 50.000 0.00 0.00 35.99 2.87
3466 3662 8.801299 TGTTCATCCAAAATACTTGCTGAAATA 58.199 29.630 0.00 0.00 0.00 1.40
3511 3707 7.333528 ACACTTGCTGAAATGAGTTCTTTTA 57.666 32.000 0.00 0.00 37.13 1.52
3512 3708 7.945134 ACACTTGCTGAAATGAGTTCTTTTAT 58.055 30.769 0.00 0.00 37.13 1.40
3513 3709 7.864379 ACACTTGCTGAAATGAGTTCTTTTATG 59.136 33.333 0.00 0.00 37.13 1.90
3514 3710 6.865205 ACTTGCTGAAATGAGTTCTTTTATGC 59.135 34.615 0.00 8.71 37.13 3.14
3515 3711 5.713025 TGCTGAAATGAGTTCTTTTATGCC 58.287 37.500 0.00 0.00 37.13 4.40
3516 3712 5.477984 TGCTGAAATGAGTTCTTTTATGCCT 59.522 36.000 0.00 0.00 37.13 4.75
3517 3713 6.015180 TGCTGAAATGAGTTCTTTTATGCCTT 60.015 34.615 0.00 0.00 37.13 4.35
3518 3714 7.176515 TGCTGAAATGAGTTCTTTTATGCCTTA 59.823 33.333 0.00 0.00 37.13 2.69
3519 3715 8.028938 GCTGAAATGAGTTCTTTTATGCCTTAA 58.971 33.333 0.00 0.00 37.13 1.85
3520 3716 9.346725 CTGAAATGAGTTCTTTTATGCCTTAAC 57.653 33.333 0.00 0.00 37.13 2.01
3521 3717 8.303876 TGAAATGAGTTCTTTTATGCCTTAACC 58.696 33.333 0.00 0.00 37.13 2.85
3522 3718 7.775053 AATGAGTTCTTTTATGCCTTAACCA 57.225 32.000 0.00 0.00 0.00 3.67
3523 3719 6.817765 TGAGTTCTTTTATGCCTTAACCAG 57.182 37.500 0.00 0.00 0.00 4.00
3524 3720 5.183140 TGAGTTCTTTTATGCCTTAACCAGC 59.817 40.000 0.00 0.00 0.00 4.85
3525 3721 4.156008 AGTTCTTTTATGCCTTAACCAGCG 59.844 41.667 0.00 0.00 0.00 5.18
3526 3722 3.013921 TCTTTTATGCCTTAACCAGCGG 58.986 45.455 0.00 0.00 0.00 5.52
3527 3723 1.757682 TTTATGCCTTAACCAGCGGG 58.242 50.000 0.00 0.00 41.29 6.13
3539 3735 2.636768 CCAGCGGGTTTCAGATTTTC 57.363 50.000 0.00 0.00 0.00 2.29
3540 3736 2.162681 CCAGCGGGTTTCAGATTTTCT 58.837 47.619 0.00 0.00 0.00 2.52
3541 3737 2.558359 CCAGCGGGTTTCAGATTTTCTT 59.442 45.455 0.00 0.00 0.00 2.52
3542 3738 3.005791 CCAGCGGGTTTCAGATTTTCTTT 59.994 43.478 0.00 0.00 0.00 2.52
3543 3739 4.501400 CCAGCGGGTTTCAGATTTTCTTTT 60.501 41.667 0.00 0.00 0.00 2.27
3544 3740 4.445385 CAGCGGGTTTCAGATTTTCTTTTG 59.555 41.667 0.00 0.00 0.00 2.44
3545 3741 3.740832 GCGGGTTTCAGATTTTCTTTTGG 59.259 43.478 0.00 0.00 0.00 3.28
3546 3742 4.500716 GCGGGTTTCAGATTTTCTTTTGGA 60.501 41.667 0.00 0.00 0.00 3.53
3547 3743 5.222631 CGGGTTTCAGATTTTCTTTTGGAG 58.777 41.667 0.00 0.00 0.00 3.86
3548 3744 5.221244 CGGGTTTCAGATTTTCTTTTGGAGT 60.221 40.000 0.00 0.00 0.00 3.85
3549 3745 6.016610 CGGGTTTCAGATTTTCTTTTGGAGTA 60.017 38.462 0.00 0.00 0.00 2.59
3550 3746 7.371159 GGGTTTCAGATTTTCTTTTGGAGTAG 58.629 38.462 0.00 0.00 0.00 2.57
3551 3747 6.863645 GGTTTCAGATTTTCTTTTGGAGTAGC 59.136 38.462 0.00 0.00 0.00 3.58
3552 3748 7.255625 GGTTTCAGATTTTCTTTTGGAGTAGCT 60.256 37.037 0.00 0.00 0.00 3.32
3553 3749 6.808008 TCAGATTTTCTTTTGGAGTAGCTG 57.192 37.500 0.00 0.00 0.00 4.24
3554 3750 5.182001 TCAGATTTTCTTTTGGAGTAGCTGC 59.818 40.000 0.00 0.00 0.00 5.25
3555 3751 4.460731 AGATTTTCTTTTGGAGTAGCTGCC 59.539 41.667 0.00 0.00 0.00 4.85
3556 3752 2.200373 TTCTTTTGGAGTAGCTGCCC 57.800 50.000 0.00 0.00 0.00 5.36
3557 3753 1.362224 TCTTTTGGAGTAGCTGCCCT 58.638 50.000 0.00 0.00 0.00 5.19
3558 3754 1.705186 TCTTTTGGAGTAGCTGCCCTT 59.295 47.619 0.00 0.00 0.00 3.95
3559 3755 2.108250 TCTTTTGGAGTAGCTGCCCTTT 59.892 45.455 0.00 0.00 0.00 3.11
3560 3756 3.329520 TCTTTTGGAGTAGCTGCCCTTTA 59.670 43.478 0.00 0.00 0.00 1.85
3561 3757 3.350219 TTTGGAGTAGCTGCCCTTTAG 57.650 47.619 0.00 0.00 0.00 1.85
3562 3758 1.204146 TGGAGTAGCTGCCCTTTAGG 58.796 55.000 0.00 0.00 39.47 2.69
3563 3759 1.273609 TGGAGTAGCTGCCCTTTAGGA 60.274 52.381 0.00 0.00 38.24 2.94
3564 3760 1.139256 GGAGTAGCTGCCCTTTAGGAC 59.861 57.143 0.00 0.00 38.24 3.85
3565 3761 2.112190 GAGTAGCTGCCCTTTAGGACT 58.888 52.381 0.00 0.00 38.24 3.85
3566 3762 2.502130 GAGTAGCTGCCCTTTAGGACTT 59.498 50.000 0.00 0.00 38.24 3.01
3567 3763 2.502130 AGTAGCTGCCCTTTAGGACTTC 59.498 50.000 0.00 0.00 38.24 3.01
3568 3764 0.250513 AGCTGCCCTTTAGGACTTCG 59.749 55.000 0.00 0.00 38.24 3.79
3569 3765 0.744771 GCTGCCCTTTAGGACTTCGG 60.745 60.000 0.00 0.00 38.24 4.30
3570 3766 0.902531 CTGCCCTTTAGGACTTCGGA 59.097 55.000 0.00 0.00 38.24 4.55
3571 3767 0.611714 TGCCCTTTAGGACTTCGGAC 59.388 55.000 0.00 0.00 38.24 4.79
3572 3768 0.903236 GCCCTTTAGGACTTCGGACT 59.097 55.000 0.00 0.00 38.24 3.85
3573 3769 2.105766 GCCCTTTAGGACTTCGGACTA 58.894 52.381 0.00 0.00 38.24 2.59
3574 3770 2.159128 GCCCTTTAGGACTTCGGACTAC 60.159 54.545 0.00 0.00 38.24 2.73
3575 3771 2.098770 CCCTTTAGGACTTCGGACTACG 59.901 54.545 0.00 0.00 40.85 3.51
3576 3772 3.012518 CCTTTAGGACTTCGGACTACGA 58.987 50.000 0.00 0.00 44.06 3.43
3587 3783 2.520686 GGACTACGAATTGGCAAACG 57.479 50.000 21.86 21.86 0.00 3.60
3588 3784 1.802365 GGACTACGAATTGGCAAACGT 59.198 47.619 28.06 28.06 41.66 3.99
3589 3785 2.412325 GGACTACGAATTGGCAAACGTG 60.412 50.000 30.73 24.49 39.28 4.49
3590 3786 1.533731 ACTACGAATTGGCAAACGTGG 59.466 47.619 30.73 29.79 41.46 4.94
3591 3787 1.801771 CTACGAATTGGCAAACGTGGA 59.198 47.619 30.73 18.82 38.96 4.02
3592 3788 0.591170 ACGAATTGGCAAACGTGGAG 59.409 50.000 25.98 9.02 37.58 3.86
3593 3789 0.871722 CGAATTGGCAAACGTGGAGA 59.128 50.000 17.53 0.00 0.00 3.71
3594 3790 1.135972 CGAATTGGCAAACGTGGAGAG 60.136 52.381 17.53 0.00 0.00 3.20
3595 3791 1.200020 GAATTGGCAAACGTGGAGAGG 59.800 52.381 3.01 0.00 0.00 3.69
3596 3792 0.609131 ATTGGCAAACGTGGAGAGGG 60.609 55.000 3.01 0.00 0.00 4.30
3597 3793 1.990160 TTGGCAAACGTGGAGAGGGT 61.990 55.000 0.00 0.00 0.00 4.34
3598 3794 1.966451 GGCAAACGTGGAGAGGGTG 60.966 63.158 0.00 0.00 0.00 4.61
3599 3795 1.966451 GCAAACGTGGAGAGGGTGG 60.966 63.158 0.00 0.00 0.00 4.61
3600 3796 1.752198 CAAACGTGGAGAGGGTGGA 59.248 57.895 0.00 0.00 0.00 4.02
3601 3797 0.107831 CAAACGTGGAGAGGGTGGAA 59.892 55.000 0.00 0.00 0.00 3.53
3602 3798 1.064825 AAACGTGGAGAGGGTGGAAT 58.935 50.000 0.00 0.00 0.00 3.01
3603 3799 1.946984 AACGTGGAGAGGGTGGAATA 58.053 50.000 0.00 0.00 0.00 1.75
3604 3800 1.192428 ACGTGGAGAGGGTGGAATAC 58.808 55.000 0.00 0.00 0.00 1.89
3605 3801 1.191535 CGTGGAGAGGGTGGAATACA 58.808 55.000 0.00 0.00 0.00 2.29
3620 3816 6.236017 TGGAATACACAAACGAATGAGAAC 57.764 37.500 0.00 0.00 0.00 3.01
3621 3817 5.107259 TGGAATACACAAACGAATGAGAACG 60.107 40.000 0.00 0.00 0.00 3.95
3622 3818 5.119588 GGAATACACAAACGAATGAGAACGA 59.880 40.000 0.00 0.00 0.00 3.85
3623 3819 3.854286 ACACAAACGAATGAGAACGAC 57.146 42.857 0.00 0.00 0.00 4.34
3624 3820 2.542595 ACACAAACGAATGAGAACGACC 59.457 45.455 0.00 0.00 0.00 4.79
3625 3821 2.542178 CACAAACGAATGAGAACGACCA 59.458 45.455 0.00 0.00 0.00 4.02
3626 3822 3.001838 CACAAACGAATGAGAACGACCAA 59.998 43.478 0.00 0.00 0.00 3.67
3627 3823 3.623960 ACAAACGAATGAGAACGACCAAA 59.376 39.130 0.00 0.00 0.00 3.28
3628 3824 4.274950 ACAAACGAATGAGAACGACCAAAT 59.725 37.500 0.00 0.00 0.00 2.32
3629 3825 5.212194 CAAACGAATGAGAACGACCAAATT 58.788 37.500 0.00 0.00 0.00 1.82
3630 3826 4.404507 ACGAATGAGAACGACCAAATTG 57.595 40.909 0.00 0.00 0.00 2.32
3631 3827 3.813166 ACGAATGAGAACGACCAAATTGT 59.187 39.130 0.00 0.00 0.00 2.71
3632 3828 4.151070 CGAATGAGAACGACCAAATTGTG 58.849 43.478 0.00 0.00 0.00 3.33
3633 3829 4.084066 CGAATGAGAACGACCAAATTGTGA 60.084 41.667 0.00 0.00 0.00 3.58
3634 3830 5.559991 CGAATGAGAACGACCAAATTGTGAA 60.560 40.000 0.00 0.00 0.00 3.18
3635 3831 5.766150 ATGAGAACGACCAAATTGTGAAA 57.234 34.783 0.00 0.00 0.00 2.69
3636 3832 5.766150 TGAGAACGACCAAATTGTGAAAT 57.234 34.783 0.00 0.00 0.00 2.17
3637 3833 6.142818 TGAGAACGACCAAATTGTGAAATT 57.857 33.333 0.00 0.00 0.00 1.82
3638 3834 6.205784 TGAGAACGACCAAATTGTGAAATTC 58.794 36.000 0.00 0.00 0.00 2.17
3639 3835 5.212194 AGAACGACCAAATTGTGAAATTCG 58.788 37.500 0.00 0.00 0.00 3.34
3640 3836 4.822036 ACGACCAAATTGTGAAATTCGA 57.178 36.364 0.00 0.00 0.00 3.71
3641 3837 4.783242 ACGACCAAATTGTGAAATTCGAG 58.217 39.130 0.00 0.00 0.00 4.04
3642 3838 3.603770 CGACCAAATTGTGAAATTCGAGC 59.396 43.478 0.00 0.00 0.00 5.03
3643 3839 4.613622 CGACCAAATTGTGAAATTCGAGCT 60.614 41.667 0.00 0.00 0.00 4.09
3644 3840 5.390461 CGACCAAATTGTGAAATTCGAGCTA 60.390 40.000 0.00 0.00 0.00 3.32
3645 3841 6.325919 ACCAAATTGTGAAATTCGAGCTAA 57.674 33.333 0.00 0.00 0.00 3.09
3646 3842 6.149633 ACCAAATTGTGAAATTCGAGCTAAC 58.850 36.000 0.00 0.00 0.00 2.34
3647 3843 5.283717 CCAAATTGTGAAATTCGAGCTAACG 59.716 40.000 0.00 0.00 0.00 3.18
3648 3844 5.856126 AATTGTGAAATTCGAGCTAACGA 57.144 34.783 0.00 0.00 40.55 3.85
3649 3845 4.903638 TTGTGAAATTCGAGCTAACGAG 57.096 40.909 0.00 0.00 43.04 4.18
3650 3846 3.250744 TGTGAAATTCGAGCTAACGAGG 58.749 45.455 0.00 0.00 43.04 4.63
3651 3847 2.029365 GTGAAATTCGAGCTAACGAGGC 59.971 50.000 0.00 0.00 43.04 4.70
3652 3848 2.268298 GAAATTCGAGCTAACGAGGCA 58.732 47.619 0.00 0.00 43.04 4.75
3653 3849 2.604046 AATTCGAGCTAACGAGGCAT 57.396 45.000 0.00 0.00 43.04 4.40
3654 3850 3.728076 AATTCGAGCTAACGAGGCATA 57.272 42.857 0.00 0.00 43.04 3.14
3655 3851 2.776312 TTCGAGCTAACGAGGCATAG 57.224 50.000 0.00 0.00 43.04 2.23
3656 3852 0.952280 TCGAGCTAACGAGGCATAGG 59.048 55.000 0.00 0.00 37.37 2.57
3657 3853 0.039074 CGAGCTAACGAGGCATAGGG 60.039 60.000 0.00 0.00 35.09 3.53
3658 3854 0.318762 GAGCTAACGAGGCATAGGGG 59.681 60.000 0.00 0.00 0.00 4.79
3659 3855 1.122019 AGCTAACGAGGCATAGGGGG 61.122 60.000 0.00 0.00 0.00 5.40
3660 3856 1.408453 GCTAACGAGGCATAGGGGGT 61.408 60.000 0.00 0.00 0.00 4.95
3661 3857 0.393077 CTAACGAGGCATAGGGGGTG 59.607 60.000 0.00 0.00 0.00 4.61
3662 3858 0.031917 TAACGAGGCATAGGGGGTGA 60.032 55.000 0.00 0.00 0.00 4.02
3663 3859 1.338136 AACGAGGCATAGGGGGTGAG 61.338 60.000 0.00 0.00 0.00 3.51
3664 3860 1.457643 CGAGGCATAGGGGGTGAGA 60.458 63.158 0.00 0.00 0.00 3.27
3665 3861 1.467678 CGAGGCATAGGGGGTGAGAG 61.468 65.000 0.00 0.00 0.00 3.20
3666 3862 1.074167 AGGCATAGGGGGTGAGAGG 60.074 63.158 0.00 0.00 0.00 3.69
3667 3863 2.150051 GGCATAGGGGGTGAGAGGG 61.150 68.421 0.00 0.00 0.00 4.30
3668 3864 2.823758 GCATAGGGGGTGAGAGGGC 61.824 68.421 0.00 0.00 0.00 5.19
3669 3865 1.074167 CATAGGGGGTGAGAGGGCT 60.074 63.158 0.00 0.00 0.00 5.19
3670 3866 1.074167 ATAGGGGGTGAGAGGGCTG 60.074 63.158 0.00 0.00 0.00 4.85
3671 3867 2.628187 ATAGGGGGTGAGAGGGCTGG 62.628 65.000 0.00 0.00 0.00 4.85
3672 3868 4.741239 GGGGGTGAGAGGGCTGGA 62.741 72.222 0.00 0.00 0.00 3.86
3673 3869 2.610859 GGGGTGAGAGGGCTGGAA 60.611 66.667 0.00 0.00 0.00 3.53
3674 3870 2.231380 GGGGTGAGAGGGCTGGAAA 61.231 63.158 0.00 0.00 0.00 3.13
3675 3871 1.301293 GGGTGAGAGGGCTGGAAAG 59.699 63.158 0.00 0.00 0.00 2.62
3676 3872 1.201429 GGGTGAGAGGGCTGGAAAGA 61.201 60.000 0.00 0.00 0.00 2.52
3677 3873 0.251634 GGTGAGAGGGCTGGAAAGAG 59.748 60.000 0.00 0.00 0.00 2.85
3678 3874 0.251634 GTGAGAGGGCTGGAAAGAGG 59.748 60.000 0.00 0.00 0.00 3.69
3679 3875 1.223211 GAGAGGGCTGGAAAGAGGC 59.777 63.158 0.00 0.00 37.80 4.70
3680 3876 1.229788 AGAGGGCTGGAAAGAGGCT 60.230 57.895 0.00 0.00 38.57 4.58
3681 3877 1.223211 GAGGGCTGGAAAGAGGCTC 59.777 63.158 6.34 6.34 38.57 4.70
3682 3878 1.539869 AGGGCTGGAAAGAGGCTCA 60.540 57.895 18.26 0.00 38.57 4.26
3683 3879 1.077858 GGGCTGGAAAGAGGCTCAG 60.078 63.158 18.26 6.53 38.57 3.35
3684 3880 1.682257 GGCTGGAAAGAGGCTCAGT 59.318 57.895 18.26 3.11 35.65 3.41
3685 3881 0.037447 GGCTGGAAAGAGGCTCAGTT 59.963 55.000 18.26 10.25 35.65 3.16
3686 3882 1.546548 GGCTGGAAAGAGGCTCAGTTT 60.547 52.381 18.26 9.39 35.65 2.66
3687 3883 2.234143 GCTGGAAAGAGGCTCAGTTTT 58.766 47.619 18.26 8.62 0.00 2.43
3688 3884 3.412386 GCTGGAAAGAGGCTCAGTTTTA 58.588 45.455 18.26 2.78 0.00 1.52
3689 3885 3.189495 GCTGGAAAGAGGCTCAGTTTTAC 59.811 47.826 18.26 9.94 0.00 2.01
3690 3886 4.646572 CTGGAAAGAGGCTCAGTTTTACT 58.353 43.478 18.26 0.00 0.00 2.24
3691 3887 5.794894 CTGGAAAGAGGCTCAGTTTTACTA 58.205 41.667 18.26 0.66 0.00 1.82
3692 3888 5.548406 TGGAAAGAGGCTCAGTTTTACTAC 58.452 41.667 18.26 0.00 0.00 2.73
3693 3889 5.307196 TGGAAAGAGGCTCAGTTTTACTACT 59.693 40.000 18.26 0.00 0.00 2.57
3694 3890 6.495872 TGGAAAGAGGCTCAGTTTTACTACTA 59.504 38.462 18.26 0.00 0.00 1.82
3695 3891 7.180408 TGGAAAGAGGCTCAGTTTTACTACTAT 59.820 37.037 18.26 0.00 0.00 2.12
3696 3892 8.041919 GGAAAGAGGCTCAGTTTTACTACTATT 58.958 37.037 18.26 0.00 0.00 1.73
3697 3893 9.089601 GAAAGAGGCTCAGTTTTACTACTATTC 57.910 37.037 18.26 0.00 0.00 1.75
3698 3894 7.964666 AGAGGCTCAGTTTTACTACTATTCT 57.035 36.000 18.26 0.00 0.00 2.40
3699 3895 9.476928 AAGAGGCTCAGTTTTACTACTATTCTA 57.523 33.333 18.26 0.00 0.00 2.10
3700 3896 9.476928 AGAGGCTCAGTTTTACTACTATTCTAA 57.523 33.333 18.26 0.00 0.00 2.10
3725 3921 9.868277 AAAAATAGTCGATGGAATTTATTTGCA 57.132 25.926 0.00 0.00 40.21 4.08
3728 3924 9.467258 AATAGTCGATGGAATTTATTTGCATTG 57.533 29.630 0.00 3.26 45.32 2.82
3729 3925 5.750067 AGTCGATGGAATTTATTTGCATTGC 59.250 36.000 0.46 0.46 45.32 3.56
3730 3926 5.519566 GTCGATGGAATTTATTTGCATTGCA 59.480 36.000 7.38 7.38 45.32 4.08
3731 3927 6.201425 GTCGATGGAATTTATTTGCATTGCAT 59.799 34.615 12.95 0.58 45.32 3.96
3732 3928 7.381948 GTCGATGGAATTTATTTGCATTGCATA 59.618 33.333 12.95 8.31 45.32 3.14
3733 3929 8.089597 TCGATGGAATTTATTTGCATTGCATAT 58.910 29.630 12.95 15.31 45.32 1.78
3734 3930 8.714179 CGATGGAATTTATTTGCATTGCATATT 58.286 29.630 17.76 10.27 45.32 1.28
3737 3933 8.991026 TGGAATTTATTTGCATTGCATATTAGC 58.009 29.630 17.76 5.97 38.76 3.09
3738 3934 9.211485 GGAATTTATTTGCATTGCATATTAGCT 57.789 29.630 17.76 0.00 38.76 3.32
3740 3936 7.410800 TTTATTTGCATTGCATATTAGCTGC 57.589 32.000 17.76 0.00 38.76 5.25
3741 3937 4.659111 TTTGCATTGCATATTAGCTGCT 57.341 36.364 12.95 7.57 38.76 4.24
3742 3938 5.771153 TTTGCATTGCATATTAGCTGCTA 57.229 34.783 12.95 5.02 38.76 3.49
3743 3939 5.771153 TTGCATTGCATATTAGCTGCTAA 57.229 34.783 23.00 23.00 38.76 3.09
3744 3940 5.771153 TGCATTGCATATTAGCTGCTAAA 57.229 34.783 24.34 14.49 40.34 1.85
3745 3941 6.335471 TGCATTGCATATTAGCTGCTAAAT 57.665 33.333 24.34 15.87 40.34 1.40
3746 3942 6.751157 TGCATTGCATATTAGCTGCTAAATT 58.249 32.000 24.34 12.65 40.34 1.82
3747 3943 7.884257 TGCATTGCATATTAGCTGCTAAATTA 58.116 30.769 24.34 14.33 40.34 1.40
3748 3944 8.525316 TGCATTGCATATTAGCTGCTAAATTAT 58.475 29.630 24.34 15.80 40.34 1.28
3749 3945 9.362539 GCATTGCATATTAGCTGCTAAATTATT 57.637 29.630 24.34 11.28 40.34 1.40
3761 3957 9.987272 AGCTGCTAAATTATTTCTTTTGTTTCT 57.013 25.926 0.00 0.00 0.00 2.52
3771 3967 7.790782 ATTTCTTTTGTTTCTAATAGGCCCA 57.209 32.000 0.00 0.00 0.00 5.36
3772 3968 6.584185 TTCTTTTGTTTCTAATAGGCCCAC 57.416 37.500 0.00 0.00 0.00 4.61
3773 3969 5.636123 TCTTTTGTTTCTAATAGGCCCACA 58.364 37.500 0.00 0.00 0.00 4.17
3774 3970 6.071984 TCTTTTGTTTCTAATAGGCCCACAA 58.928 36.000 0.00 0.00 0.00 3.33
3775 3971 6.551601 TCTTTTGTTTCTAATAGGCCCACAAA 59.448 34.615 0.00 0.00 32.31 2.83
3776 3972 5.975693 TTGTTTCTAATAGGCCCACAAAG 57.024 39.130 0.00 0.00 0.00 2.77
3777 3973 5.249780 TGTTTCTAATAGGCCCACAAAGA 57.750 39.130 0.00 0.00 0.00 2.52
3778 3974 5.826643 TGTTTCTAATAGGCCCACAAAGAT 58.173 37.500 0.00 0.00 0.00 2.40
3779 3975 5.652014 TGTTTCTAATAGGCCCACAAAGATG 59.348 40.000 0.00 0.00 0.00 2.90
3780 3976 5.450818 TTCTAATAGGCCCACAAAGATGT 57.549 39.130 0.00 0.00 41.61 3.06
3781 3977 5.450818 TCTAATAGGCCCACAAAGATGTT 57.549 39.130 0.00 0.00 37.82 2.71
3782 3978 5.192927 TCTAATAGGCCCACAAAGATGTTG 58.807 41.667 0.00 0.00 37.82 3.33
3783 3979 3.737559 ATAGGCCCACAAAGATGTTGA 57.262 42.857 0.00 0.00 37.82 3.18
3784 3980 2.380064 AGGCCCACAAAGATGTTGAA 57.620 45.000 0.00 0.00 37.82 2.69
3785 3981 1.963515 AGGCCCACAAAGATGTTGAAC 59.036 47.619 0.00 0.00 37.82 3.18
3786 3982 1.000843 GGCCCACAAAGATGTTGAACC 59.999 52.381 0.00 0.00 37.82 3.62
3787 3983 1.000843 GCCCACAAAGATGTTGAACCC 59.999 52.381 0.00 0.00 37.82 4.11
3788 3984 2.597455 CCCACAAAGATGTTGAACCCT 58.403 47.619 0.00 0.00 37.82 4.34
3789 3985 2.965147 CCCACAAAGATGTTGAACCCTT 59.035 45.455 0.00 0.00 37.82 3.95
3790 3986 3.005791 CCCACAAAGATGTTGAACCCTTC 59.994 47.826 0.00 0.00 37.82 3.46
3791 3987 3.005791 CCACAAAGATGTTGAACCCTTCC 59.994 47.826 0.00 0.00 37.82 3.46
3792 3988 3.891366 CACAAAGATGTTGAACCCTTCCT 59.109 43.478 0.00 0.00 37.82 3.36
3793 3989 4.342092 CACAAAGATGTTGAACCCTTCCTT 59.658 41.667 0.00 0.00 37.82 3.36
3794 3990 5.534654 CACAAAGATGTTGAACCCTTCCTTA 59.465 40.000 0.00 0.00 37.82 2.69
3795 3991 5.535030 ACAAAGATGTTGAACCCTTCCTTAC 59.465 40.000 0.00 0.00 35.91 2.34
3796 3992 4.993705 AGATGTTGAACCCTTCCTTACA 57.006 40.909 0.00 0.00 0.00 2.41
3797 3993 5.319043 AGATGTTGAACCCTTCCTTACAA 57.681 39.130 0.00 0.00 0.00 2.41
3798 3994 5.316987 AGATGTTGAACCCTTCCTTACAAG 58.683 41.667 0.00 0.00 0.00 3.16
3799 3995 4.781775 TGTTGAACCCTTCCTTACAAGA 57.218 40.909 0.00 0.00 0.00 3.02
3800 3996 4.457466 TGTTGAACCCTTCCTTACAAGAC 58.543 43.478 0.00 0.00 0.00 3.01
3801 3997 4.165372 TGTTGAACCCTTCCTTACAAGACT 59.835 41.667 0.00 0.00 0.00 3.24
3802 3998 5.367352 TGTTGAACCCTTCCTTACAAGACTA 59.633 40.000 0.00 0.00 0.00 2.59
3803 3999 6.043938 TGTTGAACCCTTCCTTACAAGACTAT 59.956 38.462 0.00 0.00 0.00 2.12
3804 4000 6.697641 TGAACCCTTCCTTACAAGACTATT 57.302 37.500 0.00 0.00 0.00 1.73
3805 4001 7.801893 TGAACCCTTCCTTACAAGACTATTA 57.198 36.000 0.00 0.00 0.00 0.98
3806 4002 7.848128 TGAACCCTTCCTTACAAGACTATTAG 58.152 38.462 0.00 0.00 0.00 1.73
3807 4003 7.456902 TGAACCCTTCCTTACAAGACTATTAGT 59.543 37.037 0.00 0.00 0.00 2.24
3808 4004 7.421087 ACCCTTCCTTACAAGACTATTAGTC 57.579 40.000 14.79 14.79 45.38 2.59
3839 4035 5.787380 TCAGATGATGATTATGGACGAAGG 58.213 41.667 0.00 0.00 31.12 3.46
3840 4036 5.539955 TCAGATGATGATTATGGACGAAGGA 59.460 40.000 0.00 0.00 31.12 3.36
3841 4037 6.041979 TCAGATGATGATTATGGACGAAGGAA 59.958 38.462 0.00 0.00 31.12 3.36
3842 4038 6.368243 CAGATGATGATTATGGACGAAGGAAG 59.632 42.308 0.00 0.00 0.00 3.46
3843 4039 4.380531 TGATGATTATGGACGAAGGAAGC 58.619 43.478 0.00 0.00 0.00 3.86
3844 4040 3.904800 TGATTATGGACGAAGGAAGCA 57.095 42.857 0.00 0.00 0.00 3.91
3845 4041 4.422073 TGATTATGGACGAAGGAAGCAT 57.578 40.909 0.00 0.00 0.00 3.79
3846 4042 4.129380 TGATTATGGACGAAGGAAGCATG 58.871 43.478 0.00 0.00 0.00 4.06
3847 4043 2.620251 TATGGACGAAGGAAGCATGG 57.380 50.000 0.00 0.00 0.00 3.66
3848 4044 0.749454 ATGGACGAAGGAAGCATGGC 60.749 55.000 0.00 0.00 0.00 4.40
3849 4045 2.115291 GGACGAAGGAAGCATGGCC 61.115 63.158 0.00 0.00 0.00 5.36
3850 4046 1.377202 GACGAAGGAAGCATGGCCA 60.377 57.895 8.56 8.56 0.00 5.36
3851 4047 1.648467 GACGAAGGAAGCATGGCCAC 61.648 60.000 8.16 0.00 0.00 5.01
3852 4048 1.675310 CGAAGGAAGCATGGCCACA 60.675 57.895 8.16 0.00 0.00 4.17
3853 4049 1.033746 CGAAGGAAGCATGGCCACAT 61.034 55.000 8.16 0.00 37.99 3.21
3872 4068 7.369803 CCACATGGCAATATACAATAGAGTC 57.630 40.000 0.00 0.00 0.00 3.36
3873 4069 6.936335 CCACATGGCAATATACAATAGAGTCA 59.064 38.462 0.00 0.00 0.00 3.41
3874 4070 7.445096 CCACATGGCAATATACAATAGAGTCAA 59.555 37.037 0.00 0.00 0.00 3.18
3875 4071 8.501580 CACATGGCAATATACAATAGAGTCAAG 58.498 37.037 0.00 0.00 0.00 3.02
3876 4072 8.213679 ACATGGCAATATACAATAGAGTCAAGT 58.786 33.333 0.00 0.00 0.00 3.16
3877 4073 9.710900 CATGGCAATATACAATAGAGTCAAGTA 57.289 33.333 0.00 0.00 0.00 2.24
3879 4075 9.764363 TGGCAATATACAATAGAGTCAAGTAAG 57.236 33.333 0.00 0.00 0.00 2.34
3880 4076 8.713271 GGCAATATACAATAGAGTCAAGTAAGC 58.287 37.037 0.00 0.00 0.00 3.09
3881 4077 8.713271 GCAATATACAATAGAGTCAAGTAAGCC 58.287 37.037 0.00 0.00 0.00 4.35
3882 4078 9.764363 CAATATACAATAGAGTCAAGTAAGCCA 57.236 33.333 0.00 0.00 0.00 4.75
3883 4079 9.765795 AATATACAATAGAGTCAAGTAAGCCAC 57.234 33.333 0.00 0.00 0.00 5.01
3884 4080 5.746990 ACAATAGAGTCAAGTAAGCCACT 57.253 39.130 0.00 0.00 40.05 4.00
3885 4081 6.852420 ACAATAGAGTCAAGTAAGCCACTA 57.148 37.500 0.00 0.00 36.04 2.74
3886 4082 6.868622 ACAATAGAGTCAAGTAAGCCACTAG 58.131 40.000 0.00 0.00 36.04 2.57
3887 4083 3.878160 AGAGTCAAGTAAGCCACTAGC 57.122 47.619 0.00 0.00 44.25 3.42
3897 4093 2.997899 GCCACTAGCTGCATAGGTG 58.002 57.895 1.02 5.01 38.99 4.00
3898 4094 0.465705 GCCACTAGCTGCATAGGTGA 59.534 55.000 1.02 0.00 38.99 4.02
3899 4095 1.808133 GCCACTAGCTGCATAGGTGAC 60.808 57.143 1.02 0.00 38.99 3.67
3900 4096 4.119583 GCCACTAGCTGCATAGGTGACT 62.120 54.545 1.02 0.00 41.34 3.41
3901 4097 4.810531 GCCACTAGCTGCATAGGTGACTA 61.811 52.174 1.02 0.00 42.89 2.59
3902 4098 6.244700 GCCACTAGCTGCATAGGTGACTAA 62.245 50.000 1.02 0.00 42.30 2.24
3903 4099 7.478564 GCCACTAGCTGCATAGGTGACTAAT 62.479 48.000 1.02 0.00 42.30 1.73
3919 4115 9.883142 AGGTGACTAATCTTGAAGAAGAAATAG 57.117 33.333 0.00 0.67 39.59 1.73
3920 4116 8.608317 GGTGACTAATCTTGAAGAAGAAATAGC 58.392 37.037 0.00 0.00 41.64 2.97
3921 4117 8.608317 GTGACTAATCTTGAAGAAGAAATAGCC 58.392 37.037 0.00 0.00 41.64 3.93
3922 4118 8.321353 TGACTAATCTTGAAGAAGAAATAGCCA 58.679 33.333 0.00 0.00 41.64 4.75
3923 4119 9.167311 GACTAATCTTGAAGAAGAAATAGCCAA 57.833 33.333 0.00 0.00 41.64 4.52
3924 4120 8.951243 ACTAATCTTGAAGAAGAAATAGCCAAC 58.049 33.333 0.00 0.00 41.64 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.953466 ATTTATGTGCAAGGCAGCAG 57.047 45.000 4.83 0.00 46.69 4.24
2 3 3.615496 CAGAAATTTATGTGCAAGGCAGC 59.385 43.478 4.61 0.00 40.08 5.25
3 4 4.178540 CCAGAAATTTATGTGCAAGGCAG 58.821 43.478 11.62 0.00 40.08 4.85
5 6 3.524541 CCCAGAAATTTATGTGCAAGGC 58.475 45.455 11.62 0.00 0.00 4.35
6 7 3.524541 GCCCAGAAATTTATGTGCAAGG 58.475 45.455 14.23 7.79 0.00 3.61
7 8 3.181397 CGCCCAGAAATTTATGTGCAAG 58.819 45.455 18.15 1.77 0.00 4.01
9 10 1.476085 CCGCCCAGAAATTTATGTGCA 59.524 47.619 18.15 0.00 0.00 4.57
12 13 2.422127 CGAACCGCCCAGAAATTTATGT 59.578 45.455 11.62 0.00 0.00 2.29
13 14 3.065019 CGAACCGCCCAGAAATTTATG 57.935 47.619 5.82 5.82 0.00 1.90
27 28 0.109412 AGGAAGACGTAAGCGAACCG 60.109 55.000 0.00 0.00 45.62 4.44
28 29 2.075979 AAGGAAGACGTAAGCGAACC 57.924 50.000 0.00 0.00 45.62 3.62
29 30 4.463515 AAAAAGGAAGACGTAAGCGAAC 57.536 40.909 0.00 0.00 45.62 3.95
51 52 6.033341 CAGCGTATTATTAGCAAGCCAAAAA 58.967 36.000 0.00 0.00 0.00 1.94
52 53 5.577835 CAGCGTATTATTAGCAAGCCAAAA 58.422 37.500 0.00 0.00 0.00 2.44
53 54 4.497340 GCAGCGTATTATTAGCAAGCCAAA 60.497 41.667 0.00 0.00 0.00 3.28
54 55 3.003275 GCAGCGTATTATTAGCAAGCCAA 59.997 43.478 0.00 0.00 0.00 4.52
55 56 2.548057 GCAGCGTATTATTAGCAAGCCA 59.452 45.455 0.00 0.00 0.00 4.75
56 57 2.548057 TGCAGCGTATTATTAGCAAGCC 59.452 45.455 0.00 0.00 34.73 4.35
57 58 3.878086 TGCAGCGTATTATTAGCAAGC 57.122 42.857 0.00 0.00 35.68 4.01
59 60 8.596271 TTATACTTGCAGCGTATTATTAGCAA 57.404 30.769 13.71 0.00 39.38 3.91
60 61 8.655970 CATTATACTTGCAGCGTATTATTAGCA 58.344 33.333 13.71 0.00 0.00 3.49
61 62 7.636359 GCATTATACTTGCAGCGTATTATTAGC 59.364 37.037 13.71 8.76 39.90 3.09
62 63 7.841277 CGCATTATACTTGCAGCGTATTATTAG 59.159 37.037 13.71 5.68 40.14 1.73
63 64 7.671827 CGCATTATACTTGCAGCGTATTATTA 58.328 34.615 13.71 0.00 40.14 0.98
64 65 6.534059 CGCATTATACTTGCAGCGTATTATT 58.466 36.000 13.71 1.05 40.14 1.40
65 66 6.094739 CGCATTATACTTGCAGCGTATTAT 57.905 37.500 13.71 9.03 40.14 1.28
66 67 5.509605 CGCATTATACTTGCAGCGTATTA 57.490 39.130 13.71 7.44 40.14 0.98
67 68 4.389664 CGCATTATACTTGCAGCGTATT 57.610 40.909 13.71 0.00 40.14 1.89
72 73 1.331756 AGCACGCATTATACTTGCAGC 59.668 47.619 7.43 9.28 40.14 5.25
73 74 2.352651 ACAGCACGCATTATACTTGCAG 59.647 45.455 7.43 0.00 40.14 4.41
74 75 2.355197 ACAGCACGCATTATACTTGCA 58.645 42.857 7.43 0.00 40.14 4.08
75 76 3.405170 AACAGCACGCATTATACTTGC 57.595 42.857 0.00 0.00 36.74 4.01
89 90 9.574876 TCAGGACATGACTAAGCTTTAACAGCA 62.575 40.741 3.20 0.00 41.61 4.41
90 91 7.291516 TCAGGACATGACTAAGCTTTAACAGC 61.292 42.308 3.20 2.54 40.25 4.40
91 92 6.166279 TCAGGACATGACTAAGCTTTAACAG 58.834 40.000 3.20 0.00 31.12 3.16
96 97 3.840666 TCCTCAGGACATGACTAAGCTTT 59.159 43.478 3.20 0.00 33.22 3.51
105 106 2.972021 TCACAACTTCCTCAGGACATGA 59.028 45.455 0.00 0.00 36.21 3.07
106 107 3.407424 TCACAACTTCCTCAGGACATG 57.593 47.619 0.00 0.00 0.00 3.21
107 108 3.054802 GGATCACAACTTCCTCAGGACAT 60.055 47.826 0.00 0.00 0.00 3.06
112 113 4.484537 AGATGGATCACAACTTCCTCAG 57.515 45.455 0.00 0.00 32.95 3.35
123 124 6.586344 TGAGGACAAGAATTAGATGGATCAC 58.414 40.000 0.00 0.00 0.00 3.06
129 130 6.201806 GGACGAATGAGGACAAGAATTAGATG 59.798 42.308 0.00 0.00 0.00 2.90
142 143 2.233922 GTGGAGAAAGGACGAATGAGGA 59.766 50.000 0.00 0.00 0.00 3.71
145 146 2.612972 GCTGTGGAGAAAGGACGAATGA 60.613 50.000 0.00 0.00 0.00 2.57
166 167 1.195448 CCAAACGTAGCTTGCTCACTG 59.805 52.381 0.00 0.00 31.36 3.66
170 171 0.796927 GGACCAAACGTAGCTTGCTC 59.203 55.000 0.00 0.00 31.36 4.26
182 183 3.244735 TGGAATTGATCACTCGGACCAAA 60.245 43.478 0.00 0.00 0.00 3.28
189 190 4.747108 GTGGTAGATGGAATTGATCACTCG 59.253 45.833 0.00 0.00 0.00 4.18
240 241 6.180472 TGGCTTCTCTATCTTTTGTTTAGGG 58.820 40.000 0.00 0.00 0.00 3.53
241 242 7.106239 TCTGGCTTCTCTATCTTTTGTTTAGG 58.894 38.462 0.00 0.00 0.00 2.69
290 296 1.328680 CAGCCAACATCGTATGACAGC 59.671 52.381 2.48 0.00 0.00 4.40
400 406 9.860898 GCCATTTACTTTGTTATTGAAATCTCT 57.139 29.630 0.00 0.00 0.00 3.10
401 407 8.798153 CGCCATTTACTTTGTTATTGAAATCTC 58.202 33.333 0.00 0.00 0.00 2.75
402 408 8.303876 ACGCCATTTACTTTGTTATTGAAATCT 58.696 29.630 0.00 0.00 0.00 2.40
403 409 8.460831 ACGCCATTTACTTTGTTATTGAAATC 57.539 30.769 0.00 0.00 0.00 2.17
405 411 9.347934 CATACGCCATTTACTTTGTTATTGAAA 57.652 29.630 0.00 0.00 0.00 2.69
406 412 7.971168 CCATACGCCATTTACTTTGTTATTGAA 59.029 33.333 0.00 0.00 0.00 2.69
407 413 7.476667 CCATACGCCATTTACTTTGTTATTGA 58.523 34.615 0.00 0.00 0.00 2.57
446 452 2.167487 TGGTCAAGGCAGGAAAACAAAC 59.833 45.455 0.00 0.00 0.00 2.93
539 547 1.525077 GAGGACGGTGGTTGTTGCA 60.525 57.895 0.00 0.00 0.00 4.08
648 656 1.953311 GCCGTGCTTTTTATGGAGGGA 60.953 52.381 0.00 0.00 33.60 4.20
743 751 2.174349 GGAAGCGCGCAACAGAAG 59.826 61.111 35.10 0.00 0.00 2.85
747 755 1.167155 TTAAAGGGAAGCGCGCAACA 61.167 50.000 35.10 7.13 0.00 3.33
752 760 1.002792 GCCTAATTAAAGGGAAGCGCG 60.003 52.381 0.00 0.00 37.11 6.86
829 837 1.953138 GAGGCGATGGATGTGCTCG 60.953 63.158 0.00 0.00 35.57 5.03
830 838 1.596477 GGAGGCGATGGATGTGCTC 60.596 63.158 0.00 0.00 0.00 4.26
831 839 2.507944 GGAGGCGATGGATGTGCT 59.492 61.111 0.00 0.00 0.00 4.40
832 840 2.592861 GGGAGGCGATGGATGTGC 60.593 66.667 0.00 0.00 0.00 4.57
833 841 0.533755 GAAGGGAGGCGATGGATGTG 60.534 60.000 0.00 0.00 0.00 3.21
834 842 1.700042 GGAAGGGAGGCGATGGATGT 61.700 60.000 0.00 0.00 0.00 3.06
835 843 1.072159 GGAAGGGAGGCGATGGATG 59.928 63.158 0.00 0.00 0.00 3.51
836 844 2.150051 GGGAAGGGAGGCGATGGAT 61.150 63.158 0.00 0.00 0.00 3.41
840 848 2.285368 TGTGGGAAGGGAGGCGAT 60.285 61.111 0.00 0.00 0.00 4.58
841 849 3.319198 GTGTGGGAAGGGAGGCGA 61.319 66.667 0.00 0.00 0.00 5.54
854 864 1.034838 CGAGGAGGAGAGAGGGTGTG 61.035 65.000 0.00 0.00 0.00 3.82
855 865 1.304952 CGAGGAGGAGAGAGGGTGT 59.695 63.158 0.00 0.00 0.00 4.16
857 867 0.410270 AAACGAGGAGGAGAGAGGGT 59.590 55.000 0.00 0.00 0.00 4.34
880 890 3.190079 CCACTCGATCACAATTGACGAT 58.810 45.455 13.59 13.11 35.87 3.73
899 909 1.225983 CTCTCTCTCTCGCTCCCCA 59.774 63.158 0.00 0.00 0.00 4.96
917 927 3.829601 TGTTTCTCCTCTCCACTCTTCTC 59.170 47.826 0.00 0.00 0.00 2.87
928 938 2.498078 GGTCGATCCTTGTTTCTCCTCT 59.502 50.000 0.00 0.00 0.00 3.69
959 969 1.137675 TGGCGATGAACTGATGAGAGG 59.862 52.381 0.00 0.00 0.00 3.69
964 974 2.020131 GCCTGGCGATGAACTGATG 58.980 57.895 1.35 0.00 0.00 3.07
983 993 5.009010 ACGGCCATTAAGAAATGATGATGAC 59.991 40.000 2.24 0.00 44.50 3.06
1017 1042 4.740695 GGAGATGCAAACGTAGTGAGATAC 59.259 45.833 3.45 0.00 45.00 2.24
1018 1043 4.202121 GGGAGATGCAAACGTAGTGAGATA 60.202 45.833 3.45 0.00 45.00 1.98
1019 1044 3.430929 GGGAGATGCAAACGTAGTGAGAT 60.431 47.826 3.45 0.00 45.00 2.75
1033 1062 1.632589 AACCACAAAAGGGGAGATGC 58.367 50.000 0.00 0.00 0.00 3.91
1072 1101 2.813474 GCGTGCATGCACCGAGTA 60.813 61.111 37.92 6.38 43.49 2.59
1073 1102 4.986645 TGCGTGCATGCACCGAGT 62.987 61.111 37.92 0.00 43.49 4.18
1137 1178 7.306983 GCAGCAATCATGAGCCAAAATTATAAC 60.307 37.037 0.09 0.00 0.00 1.89
1185 1230 4.503007 CGTGTACATGCATACTACTTCACC 59.497 45.833 0.00 0.00 0.00 4.02
1189 1234 6.213677 CCATACGTGTACATGCATACTACTT 58.786 40.000 15.12 0.00 0.00 2.24
1199 1244 3.355816 ACGGCCATACGTGTACATG 57.644 52.632 13.64 13.64 46.64 3.21
1307 1357 0.729116 CTGCTGCCTAACAATGACCG 59.271 55.000 0.00 0.00 0.00 4.79
1311 1361 1.131883 GTCTGCTGCTGCCTAACAATG 59.868 52.381 13.47 0.00 38.71 2.82
1467 1520 1.073763 TCCCAAGCAAAGCTAAGCTCA 59.926 47.619 12.62 0.00 40.90 4.26
1511 1565 2.047179 GGAGTGGCTTGGACGTCC 60.047 66.667 28.17 28.17 0.00 4.79
1651 1716 1.210478 ACCAACACCATGCTAGGCTAG 59.790 52.381 17.33 17.33 0.00 3.42
1652 1717 1.285280 ACCAACACCATGCTAGGCTA 58.715 50.000 0.00 0.00 0.00 3.93
1654 1719 1.256812 AAACCAACACCATGCTAGGC 58.743 50.000 0.00 0.00 0.00 3.93
1656 1721 2.297033 AGCAAAACCAACACCATGCTAG 59.703 45.455 0.00 0.00 41.92 3.42
1657 1722 2.315176 AGCAAAACCAACACCATGCTA 58.685 42.857 0.00 0.00 41.92 3.49
1726 1791 2.511659 AGGCATGGCAGCTTATGTATG 58.488 47.619 22.64 0.00 34.17 2.39
1728 1793 3.855255 TTAGGCATGGCAGCTTATGTA 57.145 42.857 22.64 0.00 34.17 2.29
1730 1795 4.595762 AAATTAGGCATGGCAGCTTATG 57.404 40.909 22.64 0.00 34.17 1.90
1731 1796 5.453762 GGAAAAATTAGGCATGGCAGCTTAT 60.454 40.000 22.64 1.48 34.17 1.73
1732 1797 4.141959 GGAAAAATTAGGCATGGCAGCTTA 60.142 41.667 22.64 1.61 34.17 3.09
1733 1798 3.369787 GGAAAAATTAGGCATGGCAGCTT 60.370 43.478 22.64 8.14 34.17 3.74
1736 1801 3.181472 GGAGGAAAAATTAGGCATGGCAG 60.181 47.826 22.64 0.00 0.00 4.85
1739 1804 4.280819 TGAGGAGGAAAAATTAGGCATGG 58.719 43.478 0.00 0.00 0.00 3.66
1743 1808 6.782082 AAAGATGAGGAGGAAAAATTAGGC 57.218 37.500 0.00 0.00 0.00 3.93
1769 1834 1.647346 CAGGTTGTAATTAGCGGCGA 58.353 50.000 12.98 0.00 0.00 5.54
1805 1870 3.372206 CGGTTAGAAATTCAGAGCAGGTG 59.628 47.826 0.00 0.00 0.00 4.00
1811 1876 4.106197 CCTCGTCGGTTAGAAATTCAGAG 58.894 47.826 0.00 0.00 0.00 3.35
1821 1886 2.094390 TGGACATTTCCTCGTCGGTTAG 60.094 50.000 0.00 0.00 43.31 2.34
1827 1892 4.451629 TCTACTTGGACATTTCCTCGTC 57.548 45.455 0.00 0.00 43.31 4.20
1841 1906 9.918630 ATTTTGACCTCATTTTTCATCTACTTG 57.081 29.630 0.00 0.00 0.00 3.16
1896 1961 9.774413 CCAAAATCTTAATAACCCGATAGTAGT 57.226 33.333 0.00 0.00 0.00 2.73
1897 1962 8.718734 GCCAAAATCTTAATAACCCGATAGTAG 58.281 37.037 0.00 0.00 0.00 2.57
1906 1971 5.099575 CACCACGCCAAAATCTTAATAACC 58.900 41.667 0.00 0.00 0.00 2.85
2169 2250 4.529219 TCATAGTGCTGCGCCGGG 62.529 66.667 9.97 0.00 0.00 5.73
2807 2948 3.334751 CAGCGTCGGCGTCAAACA 61.335 61.111 12.58 0.00 46.35 2.83
2829 2979 1.238439 AATGCGGTGAACAGGAAGTG 58.762 50.000 0.00 0.00 0.00 3.16
2875 3069 2.552315 CCGTAGACCTGCACAAAACAAT 59.448 45.455 0.00 0.00 0.00 2.71
2960 3154 1.515736 GATCAAAAGCAGCAGCCGC 60.516 57.895 0.00 0.00 43.56 6.53
2961 3155 0.098376 GAGATCAAAAGCAGCAGCCG 59.902 55.000 0.00 0.00 43.56 5.52
2980 3174 7.561356 AGGGTTCCTTCCAGAAAAACATATATG 59.439 37.037 11.29 11.29 0.00 1.78
3144 3339 7.524717 ACACAGAGTTTGGCACTTAAAATAT 57.475 32.000 0.00 0.00 35.01 1.28
3150 3345 4.041075 TGGATACACAGAGTTTGGCACTTA 59.959 41.667 0.00 0.00 46.17 2.24
3152 3347 2.371841 TGGATACACAGAGTTTGGCACT 59.628 45.455 0.00 0.00 46.17 4.40
3249 3444 2.223537 ATCGCACTCATACGCATCAA 57.776 45.000 0.00 0.00 0.00 2.57
3252 3447 3.913089 TCATTATCGCACTCATACGCAT 58.087 40.909 0.00 0.00 0.00 4.73
3271 3466 8.945481 AACAATCACATCTTTTTGTTCATTCA 57.055 26.923 0.00 0.00 37.67 2.57
3284 3479 6.713762 TCCAAACAAAGAACAATCACATCT 57.286 33.333 0.00 0.00 0.00 2.90
3286 3481 5.291971 GCTCCAAACAAAGAACAATCACAT 58.708 37.500 0.00 0.00 0.00 3.21
3291 3486 4.385358 AACGCTCCAAACAAAGAACAAT 57.615 36.364 0.00 0.00 0.00 2.71
3310 3505 5.080969 TGCCTTAGTATGGTCTGTGTAAC 57.919 43.478 4.15 0.00 37.35 2.50
3318 3513 8.299570 CAATAAAATGGATGCCTTAGTATGGTC 58.700 37.037 4.15 0.00 0.00 4.02
3380 3575 6.419710 TCACTTCAGCCGATATTTGTTATACG 59.580 38.462 0.00 0.00 0.00 3.06
3434 3630 6.127479 GCAAGTATTTTGGATGAACATACCCA 60.127 38.462 0.00 0.00 0.00 4.51
3441 3637 9.638239 TTATTTCAGCAAGTATTTTGGATGAAC 57.362 29.630 0.00 0.00 0.00 3.18
3483 3679 5.962133 AGAACTCATTTCAGCAAGTGTTTGC 60.962 40.000 4.17 4.17 44.54 3.68
3488 3684 7.148853 GCATAAAAGAACTCATTTCAGCAAGTG 60.149 37.037 0.00 0.00 36.57 3.16
3502 3698 4.156008 CGCTGGTTAAGGCATAAAAGAACT 59.844 41.667 0.00 0.00 0.00 3.01
3511 3707 3.087065 ACCCGCTGGTTAAGGCAT 58.913 55.556 0.00 0.00 44.75 4.40
3520 3716 2.162681 AGAAAATCTGAAACCCGCTGG 58.837 47.619 0.00 0.00 37.80 4.85
3521 3717 3.923017 AAGAAAATCTGAAACCCGCTG 57.077 42.857 0.00 0.00 0.00 5.18
3522 3718 4.501400 CCAAAAGAAAATCTGAAACCCGCT 60.501 41.667 0.00 0.00 0.00 5.52
3523 3719 3.740832 CCAAAAGAAAATCTGAAACCCGC 59.259 43.478 0.00 0.00 0.00 6.13
3524 3720 5.195001 TCCAAAAGAAAATCTGAAACCCG 57.805 39.130 0.00 0.00 0.00 5.28
3525 3721 6.161855 ACTCCAAAAGAAAATCTGAAACCC 57.838 37.500 0.00 0.00 0.00 4.11
3526 3722 6.863645 GCTACTCCAAAAGAAAATCTGAAACC 59.136 38.462 0.00 0.00 0.00 3.27
3527 3723 7.592903 CAGCTACTCCAAAAGAAAATCTGAAAC 59.407 37.037 0.00 0.00 0.00 2.78
3528 3724 7.651808 CAGCTACTCCAAAAGAAAATCTGAAA 58.348 34.615 0.00 0.00 0.00 2.69
3529 3725 6.294176 GCAGCTACTCCAAAAGAAAATCTGAA 60.294 38.462 0.00 0.00 0.00 3.02
3530 3726 5.182001 GCAGCTACTCCAAAAGAAAATCTGA 59.818 40.000 0.00 0.00 0.00 3.27
3531 3727 5.397326 GCAGCTACTCCAAAAGAAAATCTG 58.603 41.667 0.00 0.00 0.00 2.90
3532 3728 4.460731 GGCAGCTACTCCAAAAGAAAATCT 59.539 41.667 0.00 0.00 0.00 2.40
3533 3729 4.380973 GGGCAGCTACTCCAAAAGAAAATC 60.381 45.833 0.00 0.00 0.00 2.17
3534 3730 3.511540 GGGCAGCTACTCCAAAAGAAAAT 59.488 43.478 0.00 0.00 0.00 1.82
3535 3731 2.890945 GGGCAGCTACTCCAAAAGAAAA 59.109 45.455 0.00 0.00 0.00 2.29
3536 3732 2.108250 AGGGCAGCTACTCCAAAAGAAA 59.892 45.455 0.00 0.00 0.00 2.52
3537 3733 1.705186 AGGGCAGCTACTCCAAAAGAA 59.295 47.619 0.00 0.00 0.00 2.52
3538 3734 1.362224 AGGGCAGCTACTCCAAAAGA 58.638 50.000 0.00 0.00 0.00 2.52
3539 3735 2.206576 AAGGGCAGCTACTCCAAAAG 57.793 50.000 0.00 0.00 0.00 2.27
3540 3736 2.675658 AAAGGGCAGCTACTCCAAAA 57.324 45.000 0.00 0.00 0.00 2.44
3541 3737 2.026262 CCTAAAGGGCAGCTACTCCAAA 60.026 50.000 0.00 0.00 0.00 3.28
3542 3738 1.559682 CCTAAAGGGCAGCTACTCCAA 59.440 52.381 0.00 0.00 0.00 3.53
3543 3739 1.204146 CCTAAAGGGCAGCTACTCCA 58.796 55.000 0.00 0.00 0.00 3.86
3544 3740 1.139256 GTCCTAAAGGGCAGCTACTCC 59.861 57.143 0.00 0.00 40.23 3.85
3545 3741 2.112190 AGTCCTAAAGGGCAGCTACTC 58.888 52.381 2.98 0.00 43.78 2.59
3546 3742 2.255770 AGTCCTAAAGGGCAGCTACT 57.744 50.000 2.98 0.00 43.78 2.57
3547 3743 2.738964 CGAAGTCCTAAAGGGCAGCTAC 60.739 54.545 2.98 0.00 43.78 3.58
3548 3744 1.480954 CGAAGTCCTAAAGGGCAGCTA 59.519 52.381 2.98 0.00 43.78 3.32
3549 3745 0.250513 CGAAGTCCTAAAGGGCAGCT 59.749 55.000 2.98 0.00 43.78 4.24
3550 3746 0.744771 CCGAAGTCCTAAAGGGCAGC 60.745 60.000 2.98 0.00 43.78 5.25
3551 3747 0.902531 TCCGAAGTCCTAAAGGGCAG 59.097 55.000 2.98 0.00 43.78 4.85
3552 3748 0.611714 GTCCGAAGTCCTAAAGGGCA 59.388 55.000 2.98 0.00 43.78 5.36
3553 3749 0.903236 AGTCCGAAGTCCTAAAGGGC 59.097 55.000 0.00 0.00 40.99 5.19
3554 3750 2.098770 CGTAGTCCGAAGTCCTAAAGGG 59.901 54.545 0.00 0.00 39.56 3.95
3555 3751 3.012518 TCGTAGTCCGAAGTCCTAAAGG 58.987 50.000 0.00 0.00 44.03 3.11
3566 3762 2.070783 GTTTGCCAATTCGTAGTCCGA 58.929 47.619 0.00 0.00 45.66 4.55
3567 3763 1.201877 CGTTTGCCAATTCGTAGTCCG 60.202 52.381 0.00 0.00 38.13 4.79
3568 3764 1.802365 ACGTTTGCCAATTCGTAGTCC 59.198 47.619 6.43 0.00 34.78 3.85
3569 3765 2.412325 CCACGTTTGCCAATTCGTAGTC 60.412 50.000 7.61 0.00 35.13 2.59
3570 3766 1.533731 CCACGTTTGCCAATTCGTAGT 59.466 47.619 7.61 0.00 35.13 2.73
3571 3767 1.801771 TCCACGTTTGCCAATTCGTAG 59.198 47.619 7.61 2.47 35.13 3.51
3572 3768 1.801771 CTCCACGTTTGCCAATTCGTA 59.198 47.619 7.61 0.00 35.13 3.43
3573 3769 0.591170 CTCCACGTTTGCCAATTCGT 59.409 50.000 3.09 3.09 36.99 3.85
3574 3770 0.871722 TCTCCACGTTTGCCAATTCG 59.128 50.000 0.00 1.98 0.00 3.34
3575 3771 1.200020 CCTCTCCACGTTTGCCAATTC 59.800 52.381 0.00 0.00 0.00 2.17
3576 3772 1.247567 CCTCTCCACGTTTGCCAATT 58.752 50.000 0.00 0.00 0.00 2.32
3577 3773 0.609131 CCCTCTCCACGTTTGCCAAT 60.609 55.000 0.00 0.00 0.00 3.16
3578 3774 1.228124 CCCTCTCCACGTTTGCCAA 60.228 57.895 0.00 0.00 0.00 4.52
3579 3775 2.429930 CCCTCTCCACGTTTGCCA 59.570 61.111 0.00 0.00 0.00 4.92
3580 3776 1.966451 CACCCTCTCCACGTTTGCC 60.966 63.158 0.00 0.00 0.00 4.52
3581 3777 1.966451 CCACCCTCTCCACGTTTGC 60.966 63.158 0.00 0.00 0.00 3.68
3582 3778 0.107831 TTCCACCCTCTCCACGTTTG 59.892 55.000 0.00 0.00 0.00 2.93
3583 3779 1.064825 ATTCCACCCTCTCCACGTTT 58.935 50.000 0.00 0.00 0.00 3.60
3584 3780 1.553704 GTATTCCACCCTCTCCACGTT 59.446 52.381 0.00 0.00 0.00 3.99
3585 3781 1.192428 GTATTCCACCCTCTCCACGT 58.808 55.000 0.00 0.00 0.00 4.49
3586 3782 1.134788 GTGTATTCCACCCTCTCCACG 60.135 57.143 0.00 0.00 38.18 4.94
3587 3783 1.906574 TGTGTATTCCACCCTCTCCAC 59.093 52.381 0.00 0.00 43.85 4.02
3588 3784 2.335681 TGTGTATTCCACCCTCTCCA 57.664 50.000 0.00 0.00 43.85 3.86
3589 3785 3.344515 GTTTGTGTATTCCACCCTCTCC 58.655 50.000 0.00 0.00 43.85 3.71
3590 3786 3.000727 CGTTTGTGTATTCCACCCTCTC 58.999 50.000 0.00 0.00 43.85 3.20
3591 3787 2.635915 TCGTTTGTGTATTCCACCCTCT 59.364 45.455 0.00 0.00 43.85 3.69
3592 3788 3.048337 TCGTTTGTGTATTCCACCCTC 57.952 47.619 0.00 0.00 43.85 4.30
3593 3789 3.495434 TTCGTTTGTGTATTCCACCCT 57.505 42.857 0.00 0.00 43.85 4.34
3594 3790 3.754323 TCATTCGTTTGTGTATTCCACCC 59.246 43.478 0.00 0.00 43.85 4.61
3595 3791 4.693566 TCTCATTCGTTTGTGTATTCCACC 59.306 41.667 0.00 0.00 43.85 4.61
3596 3792 5.856126 TCTCATTCGTTTGTGTATTCCAC 57.144 39.130 0.00 0.00 44.78 4.02
3597 3793 5.107259 CGTTCTCATTCGTTTGTGTATTCCA 60.107 40.000 0.00 0.00 0.00 3.53
3598 3794 5.119588 TCGTTCTCATTCGTTTGTGTATTCC 59.880 40.000 0.00 0.00 0.00 3.01
3599 3795 6.007677 GTCGTTCTCATTCGTTTGTGTATTC 58.992 40.000 0.00 0.00 0.00 1.75
3600 3796 5.107220 GGTCGTTCTCATTCGTTTGTGTATT 60.107 40.000 0.00 0.00 0.00 1.89
3601 3797 4.387862 GGTCGTTCTCATTCGTTTGTGTAT 59.612 41.667 0.00 0.00 0.00 2.29
3602 3798 3.737266 GGTCGTTCTCATTCGTTTGTGTA 59.263 43.478 0.00 0.00 0.00 2.90
3603 3799 2.542595 GGTCGTTCTCATTCGTTTGTGT 59.457 45.455 0.00 0.00 0.00 3.72
3604 3800 2.542178 TGGTCGTTCTCATTCGTTTGTG 59.458 45.455 0.00 0.00 0.00 3.33
3605 3801 2.828877 TGGTCGTTCTCATTCGTTTGT 58.171 42.857 0.00 0.00 0.00 2.83
3606 3802 3.870723 TTGGTCGTTCTCATTCGTTTG 57.129 42.857 0.00 0.00 0.00 2.93
3607 3803 5.212194 CAATTTGGTCGTTCTCATTCGTTT 58.788 37.500 0.00 0.00 0.00 3.60
3608 3804 4.274950 ACAATTTGGTCGTTCTCATTCGTT 59.725 37.500 0.78 0.00 0.00 3.85
3609 3805 3.813166 ACAATTTGGTCGTTCTCATTCGT 59.187 39.130 0.78 0.00 0.00 3.85
3610 3806 4.084066 TCACAATTTGGTCGTTCTCATTCG 60.084 41.667 0.78 0.00 0.00 3.34
3611 3807 5.356882 TCACAATTTGGTCGTTCTCATTC 57.643 39.130 0.78 0.00 0.00 2.67
3612 3808 5.766150 TTCACAATTTGGTCGTTCTCATT 57.234 34.783 0.78 0.00 0.00 2.57
3613 3809 5.766150 TTTCACAATTTGGTCGTTCTCAT 57.234 34.783 0.78 0.00 0.00 2.90
3614 3810 5.766150 ATTTCACAATTTGGTCGTTCTCA 57.234 34.783 0.78 0.00 0.00 3.27
3615 3811 5.339611 CGAATTTCACAATTTGGTCGTTCTC 59.660 40.000 0.78 0.00 32.35 2.87
3616 3812 5.008217 TCGAATTTCACAATTTGGTCGTTCT 59.992 36.000 0.78 0.00 35.24 3.01
3617 3813 5.209240 TCGAATTTCACAATTTGGTCGTTC 58.791 37.500 0.78 0.00 35.24 3.95
3618 3814 5.176407 TCGAATTTCACAATTTGGTCGTT 57.824 34.783 0.78 0.00 35.24 3.85
3619 3815 4.783242 CTCGAATTTCACAATTTGGTCGT 58.217 39.130 0.78 0.00 35.24 4.34
3620 3816 3.603770 GCTCGAATTTCACAATTTGGTCG 59.396 43.478 0.78 1.04 35.24 4.79
3621 3817 4.798574 AGCTCGAATTTCACAATTTGGTC 58.201 39.130 0.78 0.00 35.24 4.02
3622 3818 4.853924 AGCTCGAATTTCACAATTTGGT 57.146 36.364 0.78 0.00 35.24 3.67
3623 3819 5.283717 CGTTAGCTCGAATTTCACAATTTGG 59.716 40.000 0.00 0.00 35.24 3.28
3624 3820 6.077197 TCGTTAGCTCGAATTTCACAATTTG 58.923 36.000 0.00 0.00 36.89 2.32
3625 3821 6.236017 TCGTTAGCTCGAATTTCACAATTT 57.764 33.333 0.00 0.00 36.89 1.82
3626 3822 5.163854 CCTCGTTAGCTCGAATTTCACAATT 60.164 40.000 0.00 0.00 39.34 2.32
3627 3823 4.330074 CCTCGTTAGCTCGAATTTCACAAT 59.670 41.667 0.00 0.00 39.34 2.71
3628 3824 3.678072 CCTCGTTAGCTCGAATTTCACAA 59.322 43.478 0.00 0.00 39.34 3.33
3629 3825 3.250744 CCTCGTTAGCTCGAATTTCACA 58.749 45.455 0.00 0.00 39.34 3.58
3630 3826 2.029365 GCCTCGTTAGCTCGAATTTCAC 59.971 50.000 0.00 0.00 39.34 3.18
3631 3827 2.268298 GCCTCGTTAGCTCGAATTTCA 58.732 47.619 0.00 0.00 39.34 2.69
3632 3828 2.268298 TGCCTCGTTAGCTCGAATTTC 58.732 47.619 0.00 0.00 39.34 2.17
3633 3829 2.380084 TGCCTCGTTAGCTCGAATTT 57.620 45.000 0.00 0.00 39.34 1.82
3634 3830 2.604046 ATGCCTCGTTAGCTCGAATT 57.396 45.000 0.00 0.00 39.34 2.17
3635 3831 2.029828 CCTATGCCTCGTTAGCTCGAAT 60.030 50.000 0.00 0.00 39.34 3.34
3636 3832 1.337071 CCTATGCCTCGTTAGCTCGAA 59.663 52.381 0.00 0.00 39.34 3.71
3637 3833 0.952280 CCTATGCCTCGTTAGCTCGA 59.048 55.000 0.00 0.00 38.19 4.04
3638 3834 0.039074 CCCTATGCCTCGTTAGCTCG 60.039 60.000 0.00 0.00 0.00 5.03
3639 3835 0.318762 CCCCTATGCCTCGTTAGCTC 59.681 60.000 0.00 0.00 0.00 4.09
3640 3836 1.122019 CCCCCTATGCCTCGTTAGCT 61.122 60.000 0.00 0.00 0.00 3.32
3641 3837 1.371558 CCCCCTATGCCTCGTTAGC 59.628 63.158 0.00 0.00 0.00 3.09
3642 3838 0.393077 CACCCCCTATGCCTCGTTAG 59.607 60.000 0.00 0.00 0.00 2.34
3643 3839 0.031917 TCACCCCCTATGCCTCGTTA 60.032 55.000 0.00 0.00 0.00 3.18
3644 3840 1.306654 TCACCCCCTATGCCTCGTT 60.307 57.895 0.00 0.00 0.00 3.85
3645 3841 1.762460 CTCACCCCCTATGCCTCGT 60.762 63.158 0.00 0.00 0.00 4.18
3646 3842 1.457643 TCTCACCCCCTATGCCTCG 60.458 63.158 0.00 0.00 0.00 4.63
3647 3843 1.124477 CCTCTCACCCCCTATGCCTC 61.124 65.000 0.00 0.00 0.00 4.70
3648 3844 1.074167 CCTCTCACCCCCTATGCCT 60.074 63.158 0.00 0.00 0.00 4.75
3649 3845 2.150051 CCCTCTCACCCCCTATGCC 61.150 68.421 0.00 0.00 0.00 4.40
3650 3846 2.823758 GCCCTCTCACCCCCTATGC 61.824 68.421 0.00 0.00 0.00 3.14
3651 3847 1.074167 AGCCCTCTCACCCCCTATG 60.074 63.158 0.00 0.00 0.00 2.23
3652 3848 1.074167 CAGCCCTCTCACCCCCTAT 60.074 63.158 0.00 0.00 0.00 2.57
3653 3849 2.368594 CAGCCCTCTCACCCCCTA 59.631 66.667 0.00 0.00 0.00 3.53
3654 3850 4.748798 CCAGCCCTCTCACCCCCT 62.749 72.222 0.00 0.00 0.00 4.79
3655 3851 4.741239 TCCAGCCCTCTCACCCCC 62.741 72.222 0.00 0.00 0.00 5.40
3656 3852 2.203549 CTTTCCAGCCCTCTCACCCC 62.204 65.000 0.00 0.00 0.00 4.95
3657 3853 1.201429 TCTTTCCAGCCCTCTCACCC 61.201 60.000 0.00 0.00 0.00 4.61
3658 3854 0.251634 CTCTTTCCAGCCCTCTCACC 59.748 60.000 0.00 0.00 0.00 4.02
3659 3855 0.251634 CCTCTTTCCAGCCCTCTCAC 59.748 60.000 0.00 0.00 0.00 3.51
3660 3856 1.557269 GCCTCTTTCCAGCCCTCTCA 61.557 60.000 0.00 0.00 0.00 3.27
3661 3857 1.223211 GCCTCTTTCCAGCCCTCTC 59.777 63.158 0.00 0.00 0.00 3.20
3662 3858 1.229788 AGCCTCTTTCCAGCCCTCT 60.230 57.895 0.00 0.00 0.00 3.69
3663 3859 1.223211 GAGCCTCTTTCCAGCCCTC 59.777 63.158 0.00 0.00 0.00 4.30
3664 3860 1.539869 TGAGCCTCTTTCCAGCCCT 60.540 57.895 0.00 0.00 0.00 5.19
3665 3861 1.077858 CTGAGCCTCTTTCCAGCCC 60.078 63.158 0.00 0.00 0.00 5.19
3666 3862 0.037447 AACTGAGCCTCTTTCCAGCC 59.963 55.000 0.00 0.00 0.00 4.85
3667 3863 1.902938 AAACTGAGCCTCTTTCCAGC 58.097 50.000 0.00 0.00 0.00 4.85
3668 3864 4.646572 AGTAAAACTGAGCCTCTTTCCAG 58.353 43.478 0.00 0.00 0.00 3.86
3669 3865 4.706842 AGTAAAACTGAGCCTCTTTCCA 57.293 40.909 0.00 0.00 0.00 3.53
3670 3866 5.795972 AGTAGTAAAACTGAGCCTCTTTCC 58.204 41.667 0.00 0.00 0.00 3.13
3671 3867 9.089601 GAATAGTAGTAAAACTGAGCCTCTTTC 57.910 37.037 0.00 0.00 0.00 2.62
3672 3868 8.817876 AGAATAGTAGTAAAACTGAGCCTCTTT 58.182 33.333 0.00 0.00 0.00 2.52
3673 3869 8.368962 AGAATAGTAGTAAAACTGAGCCTCTT 57.631 34.615 0.00 0.00 0.00 2.85
3674 3870 7.964666 AGAATAGTAGTAAAACTGAGCCTCT 57.035 36.000 0.00 0.00 0.00 3.69
3699 3895 9.868277 TGCAAATAAATTCCATCGACTATTTTT 57.132 25.926 0.00 0.00 0.00 1.94
3702 3898 9.467258 CAATGCAAATAAATTCCATCGACTATT 57.533 29.630 0.00 0.00 0.00 1.73
3703 3899 7.596248 GCAATGCAAATAAATTCCATCGACTAT 59.404 33.333 0.00 0.00 0.00 2.12
3704 3900 6.917477 GCAATGCAAATAAATTCCATCGACTA 59.083 34.615 0.00 0.00 0.00 2.59
3705 3901 5.750067 GCAATGCAAATAAATTCCATCGACT 59.250 36.000 0.00 0.00 0.00 4.18
3706 3902 5.519566 TGCAATGCAAATAAATTCCATCGAC 59.480 36.000 5.01 0.00 34.76 4.20
3707 3903 5.658468 TGCAATGCAAATAAATTCCATCGA 58.342 33.333 5.01 0.00 34.76 3.59
3708 3904 5.970140 TGCAATGCAAATAAATTCCATCG 57.030 34.783 5.01 0.00 34.76 3.84
3711 3907 8.991026 GCTAATATGCAATGCAAATAAATTCCA 58.009 29.630 13.45 0.00 43.62 3.53
3712 3908 9.211485 AGCTAATATGCAATGCAAATAAATTCC 57.789 29.630 13.45 3.41 43.62 3.01
3714 3910 8.500773 GCAGCTAATATGCAATGCAAATAAATT 58.499 29.630 13.45 9.68 43.62 1.82
3715 3911 7.876068 AGCAGCTAATATGCAATGCAAATAAAT 59.124 29.630 13.45 0.00 46.31 1.40
3716 3912 7.211573 AGCAGCTAATATGCAATGCAAATAAA 58.788 30.769 13.45 0.00 46.31 1.40
3717 3913 6.751157 AGCAGCTAATATGCAATGCAAATAA 58.249 32.000 13.45 0.00 46.31 1.40
3718 3914 6.335471 AGCAGCTAATATGCAATGCAAATA 57.665 33.333 13.45 0.69 46.31 1.40
3719 3915 5.209818 AGCAGCTAATATGCAATGCAAAT 57.790 34.783 13.45 3.91 46.31 2.32
3720 3916 4.659111 AGCAGCTAATATGCAATGCAAA 57.341 36.364 13.45 0.00 46.31 3.68
3721 3917 5.771153 TTAGCAGCTAATATGCAATGCAA 57.229 34.783 13.45 1.99 46.31 4.08
3722 3918 5.771153 TTTAGCAGCTAATATGCAATGCA 57.229 34.783 15.81 11.44 46.31 3.96
3723 3919 8.922058 ATAATTTAGCAGCTAATATGCAATGC 57.078 30.769 15.81 0.00 46.31 3.56
3735 3931 9.987272 AGAAACAAAAGAAATAATTTAGCAGCT 57.013 25.926 0.00 0.00 0.00 4.24
3745 3941 9.315363 TGGGCCTATTAGAAACAAAAGAAATAA 57.685 29.630 4.53 0.00 0.00 1.40
3746 3942 8.745590 GTGGGCCTATTAGAAACAAAAGAAATA 58.254 33.333 4.53 0.00 0.00 1.40
3747 3943 7.234577 TGTGGGCCTATTAGAAACAAAAGAAAT 59.765 33.333 4.53 0.00 0.00 2.17
3748 3944 6.551601 TGTGGGCCTATTAGAAACAAAAGAAA 59.448 34.615 4.53 0.00 0.00 2.52
3749 3945 6.071984 TGTGGGCCTATTAGAAACAAAAGAA 58.928 36.000 4.53 0.00 0.00 2.52
3750 3946 5.636123 TGTGGGCCTATTAGAAACAAAAGA 58.364 37.500 4.53 0.00 0.00 2.52
3751 3947 5.975693 TGTGGGCCTATTAGAAACAAAAG 57.024 39.130 4.53 0.00 0.00 2.27
3752 3948 6.551601 TCTTTGTGGGCCTATTAGAAACAAAA 59.448 34.615 4.53 0.00 36.09 2.44
3753 3949 6.071984 TCTTTGTGGGCCTATTAGAAACAAA 58.928 36.000 4.53 9.57 35.45 2.83
3754 3950 5.636123 TCTTTGTGGGCCTATTAGAAACAA 58.364 37.500 4.53 0.83 0.00 2.83
3755 3951 5.249780 TCTTTGTGGGCCTATTAGAAACA 57.750 39.130 4.53 0.00 0.00 2.83
3756 3952 5.652452 ACATCTTTGTGGGCCTATTAGAAAC 59.348 40.000 4.53 0.00 33.85 2.78
3757 3953 5.826643 ACATCTTTGTGGGCCTATTAGAAA 58.173 37.500 4.53 0.00 33.85 2.52
3758 3954 5.450818 ACATCTTTGTGGGCCTATTAGAA 57.549 39.130 4.53 0.00 33.85 2.10
3759 3955 5.045213 TCAACATCTTTGTGGGCCTATTAGA 60.045 40.000 4.53 1.16 35.83 2.10
3760 3956 5.192927 TCAACATCTTTGTGGGCCTATTAG 58.807 41.667 4.53 0.00 35.83 1.73
3761 3957 5.186256 TCAACATCTTTGTGGGCCTATTA 57.814 39.130 4.53 0.00 35.83 0.98
3762 3958 4.046286 TCAACATCTTTGTGGGCCTATT 57.954 40.909 4.53 0.00 35.83 1.73
3763 3959 3.737559 TCAACATCTTTGTGGGCCTAT 57.262 42.857 4.53 0.00 35.83 2.57
3764 3960 3.153919 GTTCAACATCTTTGTGGGCCTA 58.846 45.455 4.53 0.00 35.83 3.93
3765 3961 1.963515 GTTCAACATCTTTGTGGGCCT 59.036 47.619 4.53 0.00 35.83 5.19
3766 3962 1.000843 GGTTCAACATCTTTGTGGGCC 59.999 52.381 0.00 0.00 35.83 5.80
3767 3963 1.000843 GGGTTCAACATCTTTGTGGGC 59.999 52.381 0.00 0.00 35.83 5.36
3768 3964 2.597455 AGGGTTCAACATCTTTGTGGG 58.403 47.619 0.00 0.00 35.83 4.61
3769 3965 3.005791 GGAAGGGTTCAACATCTTTGTGG 59.994 47.826 0.00 0.00 35.83 4.17
3770 3966 3.891366 AGGAAGGGTTCAACATCTTTGTG 59.109 43.478 0.00 0.00 35.83 3.33
3771 3967 4.184649 AGGAAGGGTTCAACATCTTTGT 57.815 40.909 0.00 0.00 37.82 2.83
3772 3968 5.534654 TGTAAGGAAGGGTTCAACATCTTTG 59.465 40.000 0.00 0.00 0.00 2.77
3773 3969 5.701224 TGTAAGGAAGGGTTCAACATCTTT 58.299 37.500 0.00 0.00 0.00 2.52
3774 3970 5.319043 TGTAAGGAAGGGTTCAACATCTT 57.681 39.130 0.00 0.00 0.00 2.40
3775 3971 4.993705 TGTAAGGAAGGGTTCAACATCT 57.006 40.909 0.00 0.00 0.00 2.90
3776 3972 5.181433 GTCTTGTAAGGAAGGGTTCAACATC 59.819 44.000 0.00 0.00 0.00 3.06
3777 3973 5.070685 GTCTTGTAAGGAAGGGTTCAACAT 58.929 41.667 0.00 0.00 0.00 2.71
3778 3974 4.165372 AGTCTTGTAAGGAAGGGTTCAACA 59.835 41.667 0.00 0.00 0.00 3.33
3779 3975 4.715713 AGTCTTGTAAGGAAGGGTTCAAC 58.284 43.478 0.00 0.00 0.00 3.18
3780 3976 6.697641 ATAGTCTTGTAAGGAAGGGTTCAA 57.302 37.500 0.00 0.00 0.00 2.69
3781 3977 6.697641 AATAGTCTTGTAAGGAAGGGTTCA 57.302 37.500 0.00 0.00 0.00 3.18
3782 3978 7.849160 ACTAATAGTCTTGTAAGGAAGGGTTC 58.151 38.462 0.00 0.00 0.00 3.62
3783 3979 7.363617 CGACTAATAGTCTTGTAAGGAAGGGTT 60.364 40.741 17.23 0.00 42.92 4.11
3784 3980 6.096564 CGACTAATAGTCTTGTAAGGAAGGGT 59.903 42.308 17.23 0.00 42.92 4.34
3785 3981 6.096564 ACGACTAATAGTCTTGTAAGGAAGGG 59.903 42.308 17.23 1.16 42.92 3.95
3786 3982 7.098074 ACGACTAATAGTCTTGTAAGGAAGG 57.902 40.000 17.23 1.34 42.92 3.46
3815 4011 6.212187 TCCTTCGTCCATAATCATCATCTGAT 59.788 38.462 0.00 0.00 46.87 2.90
3816 4012 5.539955 TCCTTCGTCCATAATCATCATCTGA 59.460 40.000 0.00 0.00 38.53 3.27
3817 4013 5.787380 TCCTTCGTCCATAATCATCATCTG 58.213 41.667 0.00 0.00 0.00 2.90
3818 4014 6.425210 TTCCTTCGTCCATAATCATCATCT 57.575 37.500 0.00 0.00 0.00 2.90
3819 4015 5.121454 GCTTCCTTCGTCCATAATCATCATC 59.879 44.000 0.00 0.00 0.00 2.92
3820 4016 4.999950 GCTTCCTTCGTCCATAATCATCAT 59.000 41.667 0.00 0.00 0.00 2.45
3821 4017 4.141733 TGCTTCCTTCGTCCATAATCATCA 60.142 41.667 0.00 0.00 0.00 3.07
3822 4018 4.380531 TGCTTCCTTCGTCCATAATCATC 58.619 43.478 0.00 0.00 0.00 2.92
3823 4019 4.422073 TGCTTCCTTCGTCCATAATCAT 57.578 40.909 0.00 0.00 0.00 2.45
3824 4020 3.904800 TGCTTCCTTCGTCCATAATCA 57.095 42.857 0.00 0.00 0.00 2.57
3825 4021 3.499918 CCATGCTTCCTTCGTCCATAATC 59.500 47.826 0.00 0.00 0.00 1.75
3826 4022 3.480470 CCATGCTTCCTTCGTCCATAAT 58.520 45.455 0.00 0.00 0.00 1.28
3827 4023 2.917933 CCATGCTTCCTTCGTCCATAA 58.082 47.619 0.00 0.00 0.00 1.90
3828 4024 1.475034 GCCATGCTTCCTTCGTCCATA 60.475 52.381 0.00 0.00 0.00 2.74
3829 4025 0.749454 GCCATGCTTCCTTCGTCCAT 60.749 55.000 0.00 0.00 0.00 3.41
3830 4026 1.377202 GCCATGCTTCCTTCGTCCA 60.377 57.895 0.00 0.00 0.00 4.02
3831 4027 2.115291 GGCCATGCTTCCTTCGTCC 61.115 63.158 0.00 0.00 0.00 4.79
3832 4028 1.377202 TGGCCATGCTTCCTTCGTC 60.377 57.895 0.00 0.00 0.00 4.20
3833 4029 1.675641 GTGGCCATGCTTCCTTCGT 60.676 57.895 9.72 0.00 0.00 3.85
3834 4030 1.033746 ATGTGGCCATGCTTCCTTCG 61.034 55.000 9.72 0.00 0.00 3.79
3835 4031 0.458669 CATGTGGCCATGCTTCCTTC 59.541 55.000 9.72 0.00 41.88 3.46
3836 4032 0.974010 CCATGTGGCCATGCTTCCTT 60.974 55.000 9.72 0.00 45.90 3.36
3837 4033 1.380785 CCATGTGGCCATGCTTCCT 60.381 57.895 9.72 0.00 45.90 3.36
3838 4034 3.213264 CCATGTGGCCATGCTTCC 58.787 61.111 9.72 0.00 45.90 3.46
3848 4044 6.936335 TGACTCTATTGTATATTGCCATGTGG 59.064 38.462 0.00 0.00 38.53 4.17
3849 4045 7.967890 TGACTCTATTGTATATTGCCATGTG 57.032 36.000 0.00 0.00 0.00 3.21
3850 4046 8.213679 ACTTGACTCTATTGTATATTGCCATGT 58.786 33.333 0.00 0.00 0.00 3.21
3851 4047 8.613060 ACTTGACTCTATTGTATATTGCCATG 57.387 34.615 0.00 0.00 0.00 3.66
3853 4049 9.764363 CTTACTTGACTCTATTGTATATTGCCA 57.236 33.333 0.00 0.00 0.00 4.92
3854 4050 8.713271 GCTTACTTGACTCTATTGTATATTGCC 58.287 37.037 0.00 0.00 0.00 4.52
3855 4051 8.713271 GGCTTACTTGACTCTATTGTATATTGC 58.287 37.037 0.00 0.00 0.00 3.56
3856 4052 9.764363 TGGCTTACTTGACTCTATTGTATATTG 57.236 33.333 0.00 0.00 0.00 1.90
3857 4053 9.765795 GTGGCTTACTTGACTCTATTGTATATT 57.234 33.333 0.00 0.00 0.00 1.28
3858 4054 9.148879 AGTGGCTTACTTGACTCTATTGTATAT 57.851 33.333 0.00 0.00 35.67 0.86
3859 4055 8.534954 AGTGGCTTACTTGACTCTATTGTATA 57.465 34.615 0.00 0.00 35.67 1.47
3860 4056 7.425224 AGTGGCTTACTTGACTCTATTGTAT 57.575 36.000 0.00 0.00 35.67 2.29
3861 4057 6.852420 AGTGGCTTACTTGACTCTATTGTA 57.148 37.500 0.00 0.00 35.67 2.41
3862 4058 5.746990 AGTGGCTTACTTGACTCTATTGT 57.253 39.130 0.00 0.00 35.67 2.71
3863 4059 5.751028 GCTAGTGGCTTACTTGACTCTATTG 59.249 44.000 7.13 0.00 40.89 1.90
3864 4060 5.908341 GCTAGTGGCTTACTTGACTCTATT 58.092 41.667 7.13 0.00 40.89 1.73
3865 4061 5.523438 GCTAGTGGCTTACTTGACTCTAT 57.477 43.478 7.13 0.00 40.89 1.98
3866 4062 4.985538 GCTAGTGGCTTACTTGACTCTA 57.014 45.455 7.13 0.00 40.89 2.43
3867 4063 3.878160 GCTAGTGGCTTACTTGACTCT 57.122 47.619 7.13 0.00 40.89 3.24
3879 4075 0.465705 TCACCTATGCAGCTAGTGGC 59.534 55.000 8.52 0.00 42.19 5.01
3880 4076 1.759445 AGTCACCTATGCAGCTAGTGG 59.241 52.381 8.52 0.00 0.00 4.00
3881 4077 4.655762 TTAGTCACCTATGCAGCTAGTG 57.344 45.455 0.00 0.00 0.00 2.74
3882 4078 5.144100 AGATTAGTCACCTATGCAGCTAGT 58.856 41.667 0.00 0.00 0.00 2.57
3883 4079 5.720371 AGATTAGTCACCTATGCAGCTAG 57.280 43.478 0.00 0.00 0.00 3.42
3884 4080 5.598417 TCAAGATTAGTCACCTATGCAGCTA 59.402 40.000 0.00 0.00 0.00 3.32
3885 4081 4.406972 TCAAGATTAGTCACCTATGCAGCT 59.593 41.667 0.00 0.00 0.00 4.24
3886 4082 4.697514 TCAAGATTAGTCACCTATGCAGC 58.302 43.478 0.00 0.00 0.00 5.25
3887 4083 6.577103 TCTTCAAGATTAGTCACCTATGCAG 58.423 40.000 0.00 0.00 0.00 4.41
3888 4084 6.544928 TCTTCAAGATTAGTCACCTATGCA 57.455 37.500 0.00 0.00 0.00 3.96
3889 4085 7.268586 TCTTCTTCAAGATTAGTCACCTATGC 58.731 38.462 0.00 0.00 33.38 3.14
3890 4086 9.658799 TTTCTTCTTCAAGATTAGTCACCTATG 57.341 33.333 0.00 0.00 38.50 2.23
3893 4089 9.883142 CTATTTCTTCTTCAAGATTAGTCACCT 57.117 33.333 0.00 0.00 38.50 4.00
3894 4090 8.608317 GCTATTTCTTCTTCAAGATTAGTCACC 58.392 37.037 0.00 0.00 38.50 4.02
3895 4091 8.608317 GGCTATTTCTTCTTCAAGATTAGTCAC 58.392 37.037 0.00 0.00 38.50 3.67
3896 4092 8.321353 TGGCTATTTCTTCTTCAAGATTAGTCA 58.679 33.333 0.00 5.85 38.50 3.41
3897 4093 8.723942 TGGCTATTTCTTCTTCAAGATTAGTC 57.276 34.615 0.00 0.00 38.50 2.59
3898 4094 8.951243 GTTGGCTATTTCTTCTTCAAGATTAGT 58.049 33.333 0.00 0.00 38.50 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.