Multiple sequence alignment - TraesCS6B01G199500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G199500 chr6B 100.000 4025 0 0 3087 7111 239288391 239284367 0.000000e+00 7433.0
1 TraesCS6B01G199500 chr6B 100.000 2847 0 0 1 2847 239291477 239288631 0.000000e+00 5258.0
2 TraesCS6B01G199500 chr6D 96.020 2739 65 21 3087 5817 139313310 139310608 0.000000e+00 4414.0
3 TraesCS6B01G199500 chr6D 96.336 1310 27 7 5814 7109 139310581 139309279 0.000000e+00 2134.0
4 TraesCS6B01G199500 chr6D 84.814 1475 78 46 184 1563 139316275 139314852 0.000000e+00 1349.0
5 TraesCS6B01G199500 chr6D 96.822 535 6 3 2322 2847 139313904 139313372 0.000000e+00 883.0
6 TraesCS6B01G199500 chr6D 92.222 630 30 5 1631 2260 139314600 139313990 0.000000e+00 874.0
7 TraesCS6B01G199500 chr6D 98.936 94 1 0 2255 2348 139313904 139313997 1.230000e-37 169.0
8 TraesCS6B01G199500 chr6A 90.431 2508 97 52 423 2830 181902454 181899990 0.000000e+00 3169.0
9 TraesCS6B01G199500 chr6A 96.566 1718 45 6 3969 5679 181898723 181897013 0.000000e+00 2833.0
10 TraesCS6B01G199500 chr6A 93.483 1335 40 19 5814 7109 181896657 181895331 0.000000e+00 1940.0
11 TraesCS6B01G199500 chr6A 96.454 846 25 2 3087 3932 181899751 181898911 0.000000e+00 1391.0
12 TraesCS6B01G199500 chr6A 87.603 121 13 2 291 411 181902623 181902505 9.620000e-29 139.0
13 TraesCS6B01G199500 chr6A 86.022 93 9 3 5725 5817 181896772 181896684 5.870000e-16 97.1
14 TraesCS6B01G199500 chr7A 75.952 420 75 19 5250 5649 566541471 566541884 7.280000e-45 193.0
15 TraesCS6B01G199500 chr7A 82.390 159 24 2 1167 1321 566537963 566538121 1.240000e-27 135.0
16 TraesCS6B01G199500 chr7D 88.199 161 18 1 5250 5409 500630249 500630409 2.620000e-44 191.0
17 TraesCS6B01G199500 chr7D 83.436 163 21 4 1163 1321 500626706 500626866 5.750000e-31 147.0
18 TraesCS6B01G199500 chr7B 86.364 154 21 0 5256 5409 528766980 528767133 1.230000e-37 169.0
19 TraesCS6B01G199500 chr7B 81.875 160 25 2 1166 1321 528763383 528763542 1.610000e-26 132.0
20 TraesCS6B01G199500 chr5B 80.412 97 9 2 2212 2306 44985705 44985617 1.660000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G199500 chr6B 239284367 239291477 7110 True 6345.50 7433 100.000000 1 7111 2 chr6B.!!$R1 7110
1 TraesCS6B01G199500 chr6D 139309279 139316275 6996 True 1930.80 4414 93.242800 184 7109 5 chr6D.!!$R1 6925
2 TraesCS6B01G199500 chr6A 181895331 181902623 7292 True 1594.85 3169 91.759833 291 7109 6 chr6A.!!$R1 6818

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 135 0.029567 CTAGAGCTTGTACCGGCGAG 59.970 60.000 9.30 0.06 0.00 5.03 F
816 907 0.178068 CGCACATTAGCTGTACCCCT 59.822 55.000 0.00 0.00 35.91 4.79 F
928 1059 1.104577 GGCCTCGTGGGTTTTGTCAA 61.105 55.000 5.54 0.00 37.43 3.18 F
1903 2230 0.247814 GCAATGTCTGATCGCGGTTG 60.248 55.000 6.13 0.00 0.00 3.77 F
2705 3069 0.737219 GCGAGATTTCAGGCAGCAAT 59.263 50.000 0.00 0.00 0.00 3.56 F
3845 4209 2.289547 GCAACTAGTTTTTGAGGCACGA 59.710 45.455 5.07 0.00 0.00 4.35 F
5397 5918 2.555199 CTATTGACTGGAAGGAAGCCG 58.445 52.381 0.00 0.00 39.30 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1154 1288 0.179048 CCCAGGCATCATTAGTCGCA 60.179 55.000 0.00 0.00 0.00 5.10 R
1867 2194 0.318869 TGCCAGCAAAACAGAATGCG 60.319 50.000 0.00 0.00 46.98 4.73 R
2090 2421 0.529555 GGTGCCACGTTGTGCAAAAT 60.530 50.000 5.80 0.00 31.34 1.82 R
3270 3634 1.736681 GCTGTCTGCAGACCATTCTTC 59.263 52.381 37.23 15.86 45.28 2.87 R
3922 4286 2.935849 GGAACAGGGTTTGCAGTTTTTG 59.064 45.455 0.00 0.00 0.00 2.44 R
5464 5986 0.106918 AACAGCCGTCCAAAGGTCAA 60.107 50.000 0.00 0.00 0.00 3.18 R
6328 7111 2.341464 CGACTAACATGCTGTACACACG 59.659 50.000 0.00 0.00 0.00 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.265739 TCCTCCTCACATGCACGC 59.734 61.111 0.00 0.00 0.00 5.34
18 19 2.046988 CCTCCTCACATGCACGCA 60.047 61.111 0.00 0.00 0.00 5.24
19 20 1.450848 CCTCCTCACATGCACGCAT 60.451 57.895 0.00 0.00 37.08 4.73
20 21 1.028330 CCTCCTCACATGCACGCATT 61.028 55.000 0.72 0.00 33.90 3.56
21 22 1.655484 CTCCTCACATGCACGCATTA 58.345 50.000 0.72 0.00 33.90 1.90
22 23 2.216046 CTCCTCACATGCACGCATTAT 58.784 47.619 0.72 0.00 33.90 1.28
23 24 2.615447 CTCCTCACATGCACGCATTATT 59.385 45.455 0.72 0.00 33.90 1.40
24 25 3.802866 TCCTCACATGCACGCATTATTA 58.197 40.909 0.72 0.00 33.90 0.98
25 26 4.195416 TCCTCACATGCACGCATTATTAA 58.805 39.130 0.72 0.00 33.90 1.40
26 27 4.821260 TCCTCACATGCACGCATTATTAAT 59.179 37.500 0.72 0.00 33.90 1.40
27 28 5.049474 TCCTCACATGCACGCATTATTAATC 60.049 40.000 0.72 0.00 33.90 1.75
28 29 5.049198 CCTCACATGCACGCATTATTAATCT 60.049 40.000 0.72 0.00 33.90 2.40
29 30 6.147656 CCTCACATGCACGCATTATTAATCTA 59.852 38.462 0.72 0.00 33.90 1.98
30 31 7.120789 TCACATGCACGCATTATTAATCTAG 57.879 36.000 0.72 0.00 33.90 2.43
31 32 5.791974 CACATGCACGCATTATTAATCTAGC 59.208 40.000 0.72 0.00 33.90 3.42
32 33 5.469760 ACATGCACGCATTATTAATCTAGCA 59.530 36.000 0.72 0.00 33.90 3.49
33 34 5.342806 TGCACGCATTATTAATCTAGCAC 57.657 39.130 0.00 0.00 0.00 4.40
34 35 4.213270 TGCACGCATTATTAATCTAGCACC 59.787 41.667 0.00 0.00 0.00 5.01
35 36 4.378459 GCACGCATTATTAATCTAGCACCC 60.378 45.833 0.00 0.00 0.00 4.61
36 37 4.754618 CACGCATTATTAATCTAGCACCCA 59.245 41.667 0.00 0.00 0.00 4.51
37 38 5.412594 CACGCATTATTAATCTAGCACCCAT 59.587 40.000 0.00 0.00 0.00 4.00
38 39 5.412594 ACGCATTATTAATCTAGCACCCATG 59.587 40.000 0.00 0.00 0.00 3.66
39 40 5.412594 CGCATTATTAATCTAGCACCCATGT 59.587 40.000 0.00 0.00 0.00 3.21
40 41 6.072508 CGCATTATTAATCTAGCACCCATGTT 60.073 38.462 0.00 0.00 0.00 2.71
41 42 7.522073 CGCATTATTAATCTAGCACCCATGTTT 60.522 37.037 0.00 0.00 0.00 2.83
42 43 8.143835 GCATTATTAATCTAGCACCCATGTTTT 58.856 33.333 0.00 0.00 0.00 2.43
64 65 6.589830 TTTTTAGATGCGCTACTCATCTTC 57.410 37.500 9.73 0.00 45.99 2.87
65 66 5.521906 TTTAGATGCGCTACTCATCTTCT 57.478 39.130 9.73 0.00 45.99 2.85
66 67 5.521906 TTAGATGCGCTACTCATCTTCTT 57.478 39.130 9.73 0.00 45.99 2.52
67 68 3.715495 AGATGCGCTACTCATCTTCTTG 58.285 45.455 9.73 0.00 45.99 3.02
68 69 3.382865 AGATGCGCTACTCATCTTCTTGA 59.617 43.478 9.73 0.00 45.99 3.02
69 70 3.808466 TGCGCTACTCATCTTCTTGAT 57.192 42.857 9.73 0.00 35.40 2.57
70 71 4.128925 TGCGCTACTCATCTTCTTGATT 57.871 40.909 9.73 0.00 32.05 2.57
71 72 4.115516 TGCGCTACTCATCTTCTTGATTC 58.884 43.478 9.73 0.00 32.05 2.52
72 73 3.492756 GCGCTACTCATCTTCTTGATTCC 59.507 47.826 0.00 0.00 32.05 3.01
73 74 4.686972 CGCTACTCATCTTCTTGATTCCA 58.313 43.478 0.00 0.00 32.05 3.53
74 75 5.295950 CGCTACTCATCTTCTTGATTCCAT 58.704 41.667 0.00 0.00 32.05 3.41
75 76 6.450545 CGCTACTCATCTTCTTGATTCCATA 58.549 40.000 0.00 0.00 32.05 2.74
76 77 6.585702 CGCTACTCATCTTCTTGATTCCATAG 59.414 42.308 0.00 0.00 32.05 2.23
77 78 6.368516 GCTACTCATCTTCTTGATTCCATAGC 59.631 42.308 0.00 0.00 32.05 2.97
78 79 6.497624 ACTCATCTTCTTGATTCCATAGCT 57.502 37.500 0.00 0.00 32.05 3.32
79 80 7.609097 ACTCATCTTCTTGATTCCATAGCTA 57.391 36.000 0.00 0.00 32.05 3.32
80 81 8.027524 ACTCATCTTCTTGATTCCATAGCTAA 57.972 34.615 0.00 0.00 32.05 3.09
81 82 7.930865 ACTCATCTTCTTGATTCCATAGCTAAC 59.069 37.037 0.00 0.00 32.05 2.34
82 83 7.220030 TCATCTTCTTGATTCCATAGCTAACC 58.780 38.462 0.00 0.00 32.05 2.85
83 84 5.601662 TCTTCTTGATTCCATAGCTAACCG 58.398 41.667 0.00 0.00 0.00 4.44
84 85 3.728845 TCTTGATTCCATAGCTAACCGC 58.271 45.455 0.00 0.00 39.57 5.68
85 86 3.133901 TCTTGATTCCATAGCTAACCGCA 59.866 43.478 0.00 0.00 42.61 5.69
86 87 2.833794 TGATTCCATAGCTAACCGCAC 58.166 47.619 0.00 0.00 42.61 5.34
87 88 2.143925 GATTCCATAGCTAACCGCACC 58.856 52.381 0.00 0.00 42.61 5.01
88 89 0.179468 TTCCATAGCTAACCGCACCC 59.821 55.000 0.00 0.00 42.61 4.61
89 90 1.227853 CCATAGCTAACCGCACCCC 60.228 63.158 0.00 0.00 42.61 4.95
90 91 1.524961 CATAGCTAACCGCACCCCA 59.475 57.895 0.00 0.00 42.61 4.96
91 92 0.814010 CATAGCTAACCGCACCCCAC 60.814 60.000 0.00 0.00 42.61 4.61
92 93 1.979619 ATAGCTAACCGCACCCCACC 61.980 60.000 0.00 0.00 42.61 4.61
93 94 4.029809 GCTAACCGCACCCCACCT 62.030 66.667 0.00 0.00 38.92 4.00
94 95 2.267961 CTAACCGCACCCCACCTC 59.732 66.667 0.00 0.00 0.00 3.85
95 96 2.203877 TAACCGCACCCCACCTCT 60.204 61.111 0.00 0.00 0.00 3.69
96 97 2.240162 CTAACCGCACCCCACCTCTC 62.240 65.000 0.00 0.00 0.00 3.20
97 98 4.954118 ACCGCACCCCACCTCTCA 62.954 66.667 0.00 0.00 0.00 3.27
98 99 3.636231 CCGCACCCCACCTCTCAA 61.636 66.667 0.00 0.00 0.00 3.02
99 100 2.429930 CGCACCCCACCTCTCAAA 59.570 61.111 0.00 0.00 0.00 2.69
100 101 1.228124 CGCACCCCACCTCTCAAAA 60.228 57.895 0.00 0.00 0.00 2.44
101 102 0.821711 CGCACCCCACCTCTCAAAAA 60.822 55.000 0.00 0.00 0.00 1.94
123 124 8.910351 AAAAAGTACTCAAATGACTAGAGCTT 57.090 30.769 0.00 0.00 32.71 3.74
124 125 7.897575 AAAGTACTCAAATGACTAGAGCTTG 57.102 36.000 0.00 0.00 32.71 4.01
125 126 6.597832 AGTACTCAAATGACTAGAGCTTGT 57.402 37.500 0.00 0.00 32.71 3.16
126 127 7.704578 AGTACTCAAATGACTAGAGCTTGTA 57.295 36.000 0.00 0.00 32.71 2.41
127 128 7.540299 AGTACTCAAATGACTAGAGCTTGTAC 58.460 38.462 0.00 0.00 32.71 2.90
128 129 5.725362 ACTCAAATGACTAGAGCTTGTACC 58.275 41.667 0.00 0.00 32.71 3.34
129 130 4.744570 TCAAATGACTAGAGCTTGTACCG 58.255 43.478 0.00 0.00 0.00 4.02
130 131 3.802948 AATGACTAGAGCTTGTACCGG 57.197 47.619 0.00 0.00 0.00 5.28
131 132 0.815734 TGACTAGAGCTTGTACCGGC 59.184 55.000 0.00 0.00 0.00 6.13
132 133 0.248539 GACTAGAGCTTGTACCGGCG 60.249 60.000 0.00 0.00 0.00 6.46
133 134 0.679002 ACTAGAGCTTGTACCGGCGA 60.679 55.000 9.30 0.00 0.00 5.54
134 135 0.029567 CTAGAGCTTGTACCGGCGAG 59.970 60.000 9.30 0.06 0.00 5.03
135 136 0.679002 TAGAGCTTGTACCGGCGAGT 60.679 55.000 9.30 7.43 0.00 4.18
136 137 1.080025 GAGCTTGTACCGGCGAGTT 60.080 57.895 9.30 0.00 0.00 3.01
137 138 1.352156 GAGCTTGTACCGGCGAGTTG 61.352 60.000 9.30 0.00 0.00 3.16
138 139 1.666872 GCTTGTACCGGCGAGTTGT 60.667 57.895 9.30 0.00 0.00 3.32
139 140 0.388907 GCTTGTACCGGCGAGTTGTA 60.389 55.000 9.30 0.00 0.00 2.41
140 141 1.936203 GCTTGTACCGGCGAGTTGTAA 60.936 52.381 9.30 0.77 0.00 2.41
141 142 1.990563 CTTGTACCGGCGAGTTGTAAG 59.009 52.381 9.30 6.59 0.00 2.34
142 143 0.961019 TGTACCGGCGAGTTGTAAGT 59.039 50.000 9.30 0.00 0.00 2.24
143 144 1.336148 TGTACCGGCGAGTTGTAAGTG 60.336 52.381 9.30 0.00 0.00 3.16
144 145 0.244450 TACCGGCGAGTTGTAAGTGG 59.756 55.000 9.30 0.00 0.00 4.00
145 146 2.388232 CCGGCGAGTTGTAAGTGGC 61.388 63.158 9.30 0.00 33.00 5.01
146 147 1.666553 CGGCGAGTTGTAAGTGGCA 60.667 57.895 0.00 0.00 35.12 4.92
147 148 1.225376 CGGCGAGTTGTAAGTGGCAA 61.225 55.000 0.00 0.00 35.12 4.52
148 149 0.237498 GGCGAGTTGTAAGTGGCAAC 59.763 55.000 8.37 0.00 44.57 4.17
159 160 8.669394 GTTGTAAGTGGCAACTCAATAATTAC 57.331 34.615 0.00 0.00 41.94 1.89
160 161 8.512138 GTTGTAAGTGGCAACTCAATAATTACT 58.488 33.333 0.00 0.00 41.94 2.24
161 162 8.263940 TGTAAGTGGCAACTCAATAATTACTC 57.736 34.615 0.00 0.00 34.77 2.59
162 163 6.422776 AAGTGGCAACTCAATAATTACTCG 57.577 37.500 0.00 0.00 34.77 4.18
163 164 5.730550 AGTGGCAACTCAATAATTACTCGA 58.269 37.500 0.00 0.00 37.61 4.04
164 165 6.170506 AGTGGCAACTCAATAATTACTCGAA 58.829 36.000 0.00 0.00 37.61 3.71
165 166 6.653320 AGTGGCAACTCAATAATTACTCGAAA 59.347 34.615 0.00 0.00 37.61 3.46
166 167 7.336931 AGTGGCAACTCAATAATTACTCGAAAT 59.663 33.333 0.00 0.00 37.61 2.17
167 168 7.429340 GTGGCAACTCAATAATTACTCGAAATG 59.571 37.037 0.00 0.00 37.61 2.32
168 169 6.414987 GGCAACTCAATAATTACTCGAAATGC 59.585 38.462 0.00 0.00 0.00 3.56
169 170 6.966632 GCAACTCAATAATTACTCGAAATGCA 59.033 34.615 0.00 0.00 0.00 3.96
170 171 7.164826 GCAACTCAATAATTACTCGAAATGCAG 59.835 37.037 0.00 0.00 0.00 4.41
171 172 6.719365 ACTCAATAATTACTCGAAATGCAGC 58.281 36.000 0.00 0.00 0.00 5.25
172 173 5.737353 TCAATAATTACTCGAAATGCAGCG 58.263 37.500 0.00 0.00 0.00 5.18
173 174 5.293324 TCAATAATTACTCGAAATGCAGCGT 59.707 36.000 0.00 0.00 0.00 5.07
174 175 5.734855 ATAATTACTCGAAATGCAGCGTT 57.265 34.783 0.00 0.00 0.00 4.84
175 176 2.873170 TTACTCGAAATGCAGCGTTG 57.127 45.000 0.00 0.00 0.00 4.10
176 177 1.075542 TACTCGAAATGCAGCGTTGG 58.924 50.000 0.00 0.00 0.00 3.77
177 178 1.512734 CTCGAAATGCAGCGTTGGC 60.513 57.895 0.00 0.00 40.37 4.52
178 179 2.504681 CGAAATGCAGCGTTGGCC 60.505 61.111 0.00 0.00 41.24 5.36
179 180 2.125952 GAAATGCAGCGTTGGCCC 60.126 61.111 0.00 0.00 41.24 5.80
180 181 2.916703 AAATGCAGCGTTGGCCCA 60.917 55.556 0.00 0.00 41.24 5.36
181 182 2.824071 GAAATGCAGCGTTGGCCCAG 62.824 60.000 0.00 0.00 41.24 4.45
206 207 2.436646 CGTGTGGGCCCAGCTTAG 60.437 66.667 29.55 11.69 0.00 2.18
207 208 2.757077 GTGTGGGCCCAGCTTAGT 59.243 61.111 29.55 0.00 0.00 2.24
212 213 0.255890 TGGGCCCAGCTTAGTTCATC 59.744 55.000 24.45 0.00 0.00 2.92
216 217 3.206964 GGCCCAGCTTAGTTCATCTTAC 58.793 50.000 0.00 0.00 0.00 2.34
217 218 3.206964 GCCCAGCTTAGTTCATCTTACC 58.793 50.000 0.00 0.00 0.00 2.85
218 219 3.370527 GCCCAGCTTAGTTCATCTTACCA 60.371 47.826 0.00 0.00 0.00 3.25
219 220 4.192317 CCCAGCTTAGTTCATCTTACCAC 58.808 47.826 0.00 0.00 0.00 4.16
245 246 2.485426 CAGCAATAGTCAACCCAGTGTG 59.515 50.000 0.00 0.00 0.00 3.82
246 247 2.106511 AGCAATAGTCAACCCAGTGTGT 59.893 45.455 0.00 0.00 0.00 3.72
261 262 1.260561 GTGTGTACAAGTGAAGCACCG 59.739 52.381 0.00 0.00 34.49 4.94
304 305 2.080693 GTGAACCATGCACCGACAATA 58.919 47.619 0.00 0.00 0.00 1.90
308 309 1.466950 ACCATGCACCGACAATAAACG 59.533 47.619 0.00 0.00 0.00 3.60
315 316 3.423907 GCACCGACAATAAACGTTCGAAT 60.424 43.478 0.00 0.00 0.00 3.34
319 320 6.791299 CACCGACAATAAACGTTCGAATTAAA 59.209 34.615 0.00 0.00 0.00 1.52
326 327 9.796007 CAATAAACGTTCGAATTAAAATTAGCG 57.204 29.630 0.00 0.00 0.00 4.26
329 330 7.872211 AACGTTCGAATTAAAATTAGCGATC 57.128 32.000 0.00 0.00 28.92 3.69
338 339 6.583912 TTAAAATTAGCGATCTTCTCACGG 57.416 37.500 0.00 0.00 0.00 4.94
347 348 2.526304 TCTTCTCACGGACAAAGTGG 57.474 50.000 0.00 0.00 39.86 4.00
397 410 4.770874 TAACGAAGGCAGGGGCGC 62.771 66.667 0.00 0.00 42.47 6.53
423 436 1.689959 CGCAAGTGTGGAATTCAAGC 58.310 50.000 7.93 0.00 0.00 4.01
424 437 1.689959 GCAAGTGTGGAATTCAAGCG 58.310 50.000 7.93 0.00 0.00 4.68
425 438 1.666888 GCAAGTGTGGAATTCAAGCGG 60.667 52.381 7.93 0.00 0.00 5.52
426 439 1.879380 CAAGTGTGGAATTCAAGCGGA 59.121 47.619 7.93 0.00 0.00 5.54
427 440 2.270352 AGTGTGGAATTCAAGCGGAA 57.730 45.000 7.93 0.00 40.46 4.30
428 441 2.154462 AGTGTGGAATTCAAGCGGAAG 58.846 47.619 7.93 0.00 39.30 3.46
580 635 1.130613 CGCGCTCACCTTTCTTTCG 59.869 57.895 5.56 0.00 0.00 3.46
619 679 0.602562 TCAAATCAAAAGCGCTGGGG 59.397 50.000 12.58 2.88 0.00 4.96
690 781 6.180472 AGAGAGAGAGAGAGTTAAGTCTTGG 58.820 44.000 14.03 0.00 0.00 3.61
731 822 2.117156 CCAAATCTGCTGCCGGGAG 61.117 63.158 20.23 20.23 34.52 4.30
750 841 2.990967 ACGCAAGGCACCCCATTG 60.991 61.111 0.00 0.00 46.39 2.82
751 842 4.440127 CGCAAGGCACCCCATTGC 62.440 66.667 2.93 2.93 42.18 3.56
768 859 1.178276 TGCCGTTTCTCTCTCCTCTC 58.822 55.000 0.00 0.00 0.00 3.20
779 870 1.152860 CTCCTCTCTCCGCTGCCTA 60.153 63.158 0.00 0.00 0.00 3.93
816 907 0.178068 CGCACATTAGCTGTACCCCT 59.822 55.000 0.00 0.00 35.91 4.79
928 1059 1.104577 GGCCTCGTGGGTTTTGTCAA 61.105 55.000 5.54 0.00 37.43 3.18
944 1075 2.027653 TGTCAAGCGAGAGAGAGAGAGA 60.028 50.000 0.00 0.00 0.00 3.10
945 1076 2.609459 GTCAAGCGAGAGAGAGAGAGAG 59.391 54.545 0.00 0.00 0.00 3.20
954 1085 2.101582 GAGAGAGAGAGAGCGAGAGTCT 59.898 54.545 0.00 0.00 0.00 3.24
1159 1293 4.595538 TGTGTCGGTGGGTGCGAC 62.596 66.667 0.00 0.00 0.00 5.19
1301 1441 3.695606 GTCTCCTGCACCGGCTCA 61.696 66.667 0.00 0.00 41.91 4.26
1346 1486 2.046023 CTCGCATGCCTCAACCCA 60.046 61.111 13.15 0.00 0.00 4.51
1354 1494 3.788937 CATGCCTCAACCCATTGATTTC 58.211 45.455 0.00 0.00 43.92 2.17
1355 1495 1.818060 TGCCTCAACCCATTGATTTCG 59.182 47.619 0.00 0.00 43.92 3.46
1360 1500 5.296748 CCTCAACCCATTGATTTCGTTTTT 58.703 37.500 0.00 0.00 43.92 1.94
1361 1501 5.405269 CCTCAACCCATTGATTTCGTTTTTC 59.595 40.000 0.00 0.00 43.92 2.29
1363 1503 6.212955 TCAACCCATTGATTTCGTTTTTCTC 58.787 36.000 0.00 0.00 40.01 2.87
1365 1505 6.405278 ACCCATTGATTTCGTTTTTCTCTT 57.595 33.333 0.00 0.00 0.00 2.85
1366 1506 6.447162 ACCCATTGATTTCGTTTTTCTCTTC 58.553 36.000 0.00 0.00 0.00 2.87
1367 1507 6.265422 ACCCATTGATTTCGTTTTTCTCTTCT 59.735 34.615 0.00 0.00 0.00 2.85
1368 1508 6.583806 CCCATTGATTTCGTTTTTCTCTTCTG 59.416 38.462 0.00 0.00 0.00 3.02
1369 1509 7.141363 CCATTGATTTCGTTTTTCTCTTCTGT 58.859 34.615 0.00 0.00 0.00 3.41
1371 1511 6.918892 TGATTTCGTTTTTCTCTTCTGTGA 57.081 33.333 0.00 0.00 0.00 3.58
1373 1513 7.930217 TGATTTCGTTTTTCTCTTCTGTGATT 58.070 30.769 0.00 0.00 0.00 2.57
1374 1514 7.857389 TGATTTCGTTTTTCTCTTCTGTGATTG 59.143 33.333 0.00 0.00 0.00 2.67
1375 1515 6.918892 TTCGTTTTTCTCTTCTGTGATTGA 57.081 33.333 0.00 0.00 0.00 2.57
1377 1517 7.496529 TCGTTTTTCTCTTCTGTGATTGATT 57.503 32.000 0.00 0.00 0.00 2.57
1402 1543 3.572632 TGCTAGTACTCCGTACATCCT 57.427 47.619 0.00 0.00 41.03 3.24
1444 1585 2.716217 GTATCCAACAGCAAGCTTCCT 58.284 47.619 0.00 0.00 0.00 3.36
1477 1618 2.415608 CGGCTCTCTGGGCTACGAA 61.416 63.158 0.00 0.00 0.00 3.85
1505 1646 5.296780 TCCAATCTGTTCTCACTCAAAACAC 59.703 40.000 0.00 0.00 0.00 3.32
1525 1666 4.974792 TGAGAGCTCACAACTCGC 57.025 55.556 17.77 0.00 39.23 5.03
1532 1675 1.972198 CTCACAACTCGCCCCACTA 59.028 57.895 0.00 0.00 0.00 2.74
1571 1714 3.503363 TCTCTTTGTGCATCATGTTGACC 59.497 43.478 7.98 0.00 0.00 4.02
1572 1715 2.557924 TCTTTGTGCATCATGTTGACCC 59.442 45.455 7.98 0.00 0.00 4.46
1611 1754 2.364970 CAGGGATTTGAGCAACAACCAA 59.635 45.455 0.00 0.00 38.29 3.67
1827 2154 6.105397 ACCTGTAAGAAAATACGTTCCTCA 57.895 37.500 0.00 0.00 34.07 3.86
1832 2159 5.684550 AAGAAAATACGTTCCTCACAACC 57.315 39.130 0.00 0.00 0.00 3.77
1837 2164 7.499895 AGAAAATACGTTCCTCACAACCTTTTA 59.500 33.333 0.00 0.00 0.00 1.52
1903 2230 0.247814 GCAATGTCTGATCGCGGTTG 60.248 55.000 6.13 0.00 0.00 3.77
1921 2248 3.366374 GGTTGACCTTTCTATGCAGCAAC 60.366 47.826 0.00 0.00 35.06 4.17
1974 2301 3.049912 GCGATTTGTTTGGAAACCTCAC 58.950 45.455 0.00 0.00 38.11 3.51
2003 2330 3.849911 TCAGAGTTGTAAGGCATCTTCG 58.150 45.455 0.00 0.00 34.59 3.79
2090 2421 3.755112 TCCACACACTTTTCGGATACA 57.245 42.857 0.00 0.00 0.00 2.29
2095 2426 5.629020 CCACACACTTTTCGGATACATTTTG 59.371 40.000 0.00 0.00 0.00 2.44
2202 2533 1.761449 TTTGCTGGCTTCACAGTTCA 58.239 45.000 0.00 0.00 40.59 3.18
2691 3055 3.285484 CCTTACTACCCTGTAAGCGAGA 58.715 50.000 8.42 0.00 44.66 4.04
2700 3064 2.621338 CTGTAAGCGAGATTTCAGGCA 58.379 47.619 0.73 0.00 0.00 4.75
2705 3069 0.737219 GCGAGATTTCAGGCAGCAAT 59.263 50.000 0.00 0.00 0.00 3.56
2745 3109 5.759506 TCCTGTCGTTTGCTTGATAAAAA 57.240 34.783 0.00 0.00 0.00 1.94
3366 3730 7.624360 TCTTCTTTTGGTATTATGCATTCGT 57.376 32.000 3.54 0.00 0.00 3.85
3554 3918 3.000542 GCCGTTAGCTGATAAGGCAACT 61.001 50.000 16.09 0.00 45.84 3.16
3845 4209 2.289547 GCAACTAGTTTTTGAGGCACGA 59.710 45.455 5.07 0.00 0.00 4.35
3920 4284 6.057533 CACTCAATAGATCTAATGGTGGCAA 58.942 40.000 20.63 4.09 0.00 4.52
3922 4286 6.543831 ACTCAATAGATCTAATGGTGGCAAAC 59.456 38.462 16.13 0.00 0.00 2.93
4363 4879 9.862149 AGTTATATAACCCTGGTGGAAATTTAG 57.138 33.333 19.74 0.00 36.88 1.85
4374 4890 4.280929 GGTGGAAATTTAGCAAGTCCTTGT 59.719 41.667 8.69 0.00 42.31 3.16
4852 5373 9.612620 CTTCTTGTTTATGAGTACATTGGAAAC 57.387 33.333 0.00 0.00 37.87 2.78
5098 5619 9.139174 CATAGAAATTTTAAGTCCGCAAACATT 57.861 29.630 0.00 0.00 0.00 2.71
5213 5734 5.067936 ACATCCAAGTACCGAGATAGTTCTG 59.932 44.000 0.00 0.00 30.30 3.02
5258 5779 5.596772 ACCTGCACTAATTACTTGGTTTGTT 59.403 36.000 0.00 0.00 0.00 2.83
5385 5906 6.068010 AGTAGTGATGCTAGAGCTATTGACT 58.932 40.000 2.72 0.98 42.66 3.41
5397 5918 2.555199 CTATTGACTGGAAGGAAGCCG 58.445 52.381 0.00 0.00 39.30 5.52
5438 5959 7.180051 ACCCTCTAGCTTATATTCTGATTCTGG 59.820 40.741 0.00 0.00 0.00 3.86
5441 5962 7.382110 TCTAGCTTATATTCTGATTCTGGTGC 58.618 38.462 0.00 0.00 0.00 5.01
5605 6127 1.597663 GGAATGTACCCTGCGAAATCG 59.402 52.381 0.00 0.00 43.27 3.34
5656 6178 2.828877 TGTGTTCAGGTACCGTCTTTG 58.171 47.619 6.18 0.00 0.00 2.77
5664 6186 2.148768 GGTACCGTCTTTGTTTGGGAG 58.851 52.381 0.00 0.00 0.00 4.30
5679 6201 5.939883 TGTTTGGGAGAGATATTCAGTTGTG 59.060 40.000 0.00 0.00 0.00 3.33
5680 6202 5.762179 TTGGGAGAGATATTCAGTTGTGT 57.238 39.130 0.00 0.00 0.00 3.72
5681 6203 6.867519 TTGGGAGAGATATTCAGTTGTGTA 57.132 37.500 0.00 0.00 0.00 2.90
5682 6204 6.471233 TGGGAGAGATATTCAGTTGTGTAG 57.529 41.667 0.00 0.00 0.00 2.74
5683 6205 6.194967 TGGGAGAGATATTCAGTTGTGTAGA 58.805 40.000 0.00 0.00 0.00 2.59
5684 6206 6.322456 TGGGAGAGATATTCAGTTGTGTAGAG 59.678 42.308 0.00 0.00 0.00 2.43
5685 6207 6.547880 GGGAGAGATATTCAGTTGTGTAGAGA 59.452 42.308 0.00 0.00 0.00 3.10
5686 6208 7.422399 GGAGAGATATTCAGTTGTGTAGAGAC 58.578 42.308 0.00 0.00 0.00 3.36
5687 6209 7.284489 GGAGAGATATTCAGTTGTGTAGAGACT 59.716 40.741 0.00 0.00 0.00 3.24
5688 6210 9.332502 GAGAGATATTCAGTTGTGTAGAGACTA 57.667 37.037 0.00 0.00 0.00 2.59
5689 6211 9.337396 AGAGATATTCAGTTGTGTAGAGACTAG 57.663 37.037 0.00 0.00 0.00 2.57
5690 6212 9.116067 GAGATATTCAGTTGTGTAGAGACTAGT 57.884 37.037 0.00 0.00 0.00 2.57
5691 6213 9.469097 AGATATTCAGTTGTGTAGAGACTAGTT 57.531 33.333 0.00 0.00 0.00 2.24
5694 6216 6.814506 TCAGTTGTGTAGAGACTAGTTACC 57.185 41.667 0.00 0.00 0.00 2.85
5695 6217 5.709164 TCAGTTGTGTAGAGACTAGTTACCC 59.291 44.000 0.00 0.00 0.00 3.69
5696 6218 5.475909 CAGTTGTGTAGAGACTAGTTACCCA 59.524 44.000 0.00 0.00 0.00 4.51
5697 6219 6.153000 CAGTTGTGTAGAGACTAGTTACCCAT 59.847 42.308 0.00 0.00 0.00 4.00
5698 6220 7.338703 CAGTTGTGTAGAGACTAGTTACCCATA 59.661 40.741 0.00 0.00 0.00 2.74
5699 6221 7.892241 AGTTGTGTAGAGACTAGTTACCCATAA 59.108 37.037 0.00 0.00 0.00 1.90
5700 6222 7.636150 TGTGTAGAGACTAGTTACCCATAAC 57.364 40.000 0.00 0.00 41.00 1.89
5701 6223 6.604795 TGTGTAGAGACTAGTTACCCATAACC 59.395 42.308 0.00 0.00 41.54 2.85
5702 6224 6.604795 GTGTAGAGACTAGTTACCCATAACCA 59.395 42.308 0.00 0.00 41.54 3.67
5703 6225 7.287235 GTGTAGAGACTAGTTACCCATAACCAT 59.713 40.741 0.00 0.00 41.54 3.55
5746 6488 8.965986 ATAATAAAAGAAGAAAAGAACACGCC 57.034 30.769 0.00 0.00 0.00 5.68
5749 6491 6.445357 AAAAGAAGAAAAGAACACGCCTAA 57.555 33.333 0.00 0.00 0.00 2.69
5750 6492 6.635030 AAAGAAGAAAAGAACACGCCTAAT 57.365 33.333 0.00 0.00 0.00 1.73
5751 6493 7.739498 AAAGAAGAAAAGAACACGCCTAATA 57.261 32.000 0.00 0.00 0.00 0.98
5752 6494 6.969828 AGAAGAAAAGAACACGCCTAATAG 57.030 37.500 0.00 0.00 0.00 1.73
5753 6495 6.465084 AGAAGAAAAGAACACGCCTAATAGT 58.535 36.000 0.00 0.00 0.00 2.12
5754 6496 6.935208 AGAAGAAAAGAACACGCCTAATAGTT 59.065 34.615 0.00 0.00 0.00 2.24
5768 6510 6.967199 CGCCTAATAGTTTTTGTTCAGATTCC 59.033 38.462 0.00 0.00 0.00 3.01
5770 6512 8.523658 GCCTAATAGTTTTTGTTCAGATTCCTT 58.476 33.333 0.00 0.00 0.00 3.36
5787 6529 4.386867 TCCTTCAATCTAACGTGCCTAG 57.613 45.455 0.00 0.00 0.00 3.02
5863 6635 7.385894 AGTTATCCTGGCTCATCTCTTAAAT 57.614 36.000 0.00 0.00 0.00 1.40
6044 6816 1.200519 TAGTAAGGCGGCAATCAGGT 58.799 50.000 13.08 0.00 0.00 4.00
6068 6840 5.012768 TGAGGAACTAGGGTTTTCTTACAGG 59.987 44.000 0.00 0.00 41.55 4.00
6092 6864 2.432874 TCCAGAACGTGAAGGAGAAACA 59.567 45.455 0.00 0.00 0.00 2.83
6141 6913 4.751767 TCAATGGCAAAAGTGAAAAGGT 57.248 36.364 0.00 0.00 0.00 3.50
6142 6914 4.692228 TCAATGGCAAAAGTGAAAAGGTC 58.308 39.130 0.00 0.00 0.00 3.85
6143 6915 3.751479 ATGGCAAAAGTGAAAAGGTCC 57.249 42.857 0.00 0.00 0.00 4.46
6186 6961 2.939103 GGTGACTGCATATGAACTGGAC 59.061 50.000 6.97 0.00 0.00 4.02
6204 6987 3.118445 TGGACACATGAGTTGTTCAGACA 60.118 43.478 0.00 0.00 39.68 3.41
6300 7083 6.211184 TCATTTTGTTCGGGGTAGTCTACTTA 59.789 38.462 9.85 0.00 0.00 2.24
6307 7090 4.460382 TCGGGGTAGTCTACTTAACAGTTG 59.540 45.833 9.85 0.00 34.06 3.16
6327 7110 6.470235 CAGTTGAACTGTGTTCTCAAATCAAC 59.530 38.462 16.84 16.00 41.19 3.18
6328 7111 5.499139 TGAACTGTGTTCTCAAATCAACC 57.501 39.130 11.06 0.00 0.00 3.77
6487 7270 9.334693 GGCTAAAATTTTCTATGATTATGCGAG 57.665 33.333 6.72 0.00 0.00 5.03
6538 7321 3.507162 TGATCTGTGTTTGTCCACCAT 57.493 42.857 0.00 0.00 34.35 3.55
6539 7322 3.148412 TGATCTGTGTTTGTCCACCATG 58.852 45.455 0.00 0.00 34.35 3.66
6540 7323 2.727123 TCTGTGTTTGTCCACCATGT 57.273 45.000 0.00 0.00 34.35 3.21
6904 7714 0.831966 ATCAAGAGCTCAGGCAGGAG 59.168 55.000 17.77 2.20 41.70 3.69
7109 7919 3.602103 GCGATGCCACCATTTCCA 58.398 55.556 0.00 0.00 0.00 3.53
7110 7920 1.434696 GCGATGCCACCATTTCCAG 59.565 57.895 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.902765 ATGCGTGCATGTGAGGAGGA 61.903 55.000 6.53 0.00 35.03 3.71
1 2 1.028330 AATGCGTGCATGTGAGGAGG 61.028 55.000 8.30 0.00 36.68 4.30
2 3 1.655484 TAATGCGTGCATGTGAGGAG 58.345 50.000 8.30 0.00 36.68 3.69
3 4 2.330440 ATAATGCGTGCATGTGAGGA 57.670 45.000 8.30 0.00 36.68 3.71
4 5 4.550577 TTAATAATGCGTGCATGTGAGG 57.449 40.909 8.30 0.00 36.68 3.86
5 6 5.993891 AGATTAATAATGCGTGCATGTGAG 58.006 37.500 8.30 0.00 36.68 3.51
6 7 6.347644 GCTAGATTAATAATGCGTGCATGTGA 60.348 38.462 8.30 0.00 36.68 3.58
7 8 5.791974 GCTAGATTAATAATGCGTGCATGTG 59.208 40.000 8.30 0.00 36.68 3.21
8 9 5.469760 TGCTAGATTAATAATGCGTGCATGT 59.530 36.000 8.30 1.88 36.68 3.21
9 10 5.791974 GTGCTAGATTAATAATGCGTGCATG 59.208 40.000 8.30 0.09 36.68 4.06
10 11 5.106555 GGTGCTAGATTAATAATGCGTGCAT 60.107 40.000 0.51 0.51 38.46 3.96
11 12 4.213270 GGTGCTAGATTAATAATGCGTGCA 59.787 41.667 0.00 0.00 0.00 4.57
12 13 4.378459 GGGTGCTAGATTAATAATGCGTGC 60.378 45.833 0.00 0.00 0.00 5.34
13 14 4.754618 TGGGTGCTAGATTAATAATGCGTG 59.245 41.667 0.00 0.00 0.00 5.34
14 15 4.968259 TGGGTGCTAGATTAATAATGCGT 58.032 39.130 0.00 0.00 0.00 5.24
15 16 5.412594 ACATGGGTGCTAGATTAATAATGCG 59.587 40.000 0.00 0.00 0.00 4.73
16 17 6.824305 ACATGGGTGCTAGATTAATAATGC 57.176 37.500 0.00 0.00 0.00 3.56
41 42 6.341316 AGAAGATGAGTAGCGCATCTAAAAA 58.659 36.000 11.47 0.00 46.94 1.94
42 43 5.907207 AGAAGATGAGTAGCGCATCTAAAA 58.093 37.500 11.47 0.00 46.94 1.52
43 44 5.521906 AGAAGATGAGTAGCGCATCTAAA 57.478 39.130 11.47 0.00 46.94 1.85
44 45 5.067805 TCAAGAAGATGAGTAGCGCATCTAA 59.932 40.000 11.47 0.00 46.94 2.10
45 46 4.580580 TCAAGAAGATGAGTAGCGCATCTA 59.419 41.667 11.47 0.00 46.94 1.98
47 48 3.711086 TCAAGAAGATGAGTAGCGCATC 58.289 45.455 11.47 2.87 40.15 3.91
48 49 3.808466 TCAAGAAGATGAGTAGCGCAT 57.192 42.857 11.47 0.00 0.00 4.73
49 50 3.808466 ATCAAGAAGATGAGTAGCGCA 57.192 42.857 11.47 0.00 35.06 6.09
50 51 3.492756 GGAATCAAGAAGATGAGTAGCGC 59.507 47.826 0.00 0.00 36.96 5.92
51 52 4.686972 TGGAATCAAGAAGATGAGTAGCG 58.313 43.478 0.00 0.00 36.96 4.26
52 53 6.368516 GCTATGGAATCAAGAAGATGAGTAGC 59.631 42.308 0.00 0.00 36.96 3.58
53 54 7.669427 AGCTATGGAATCAAGAAGATGAGTAG 58.331 38.462 0.00 0.00 36.96 2.57
54 55 7.609097 AGCTATGGAATCAAGAAGATGAGTA 57.391 36.000 0.00 0.00 36.96 2.59
55 56 6.497624 AGCTATGGAATCAAGAAGATGAGT 57.502 37.500 0.00 0.00 36.96 3.41
56 57 7.387397 GGTTAGCTATGGAATCAAGAAGATGAG 59.613 40.741 0.00 0.00 36.96 2.90
57 58 7.220030 GGTTAGCTATGGAATCAAGAAGATGA 58.780 38.462 0.00 0.00 36.96 2.92
58 59 6.146837 CGGTTAGCTATGGAATCAAGAAGATG 59.853 42.308 0.00 0.00 36.96 2.90
59 60 6.226787 CGGTTAGCTATGGAATCAAGAAGAT 58.773 40.000 0.00 0.00 39.09 2.40
60 61 5.601662 CGGTTAGCTATGGAATCAAGAAGA 58.398 41.667 0.00 0.00 0.00 2.87
61 62 4.212214 GCGGTTAGCTATGGAATCAAGAAG 59.788 45.833 0.00 0.00 44.04 2.85
62 63 4.127171 GCGGTTAGCTATGGAATCAAGAA 58.873 43.478 0.00 0.00 44.04 2.52
63 64 3.728845 GCGGTTAGCTATGGAATCAAGA 58.271 45.455 0.00 0.00 44.04 3.02
77 78 2.240162 GAGAGGTGGGGTGCGGTTAG 62.240 65.000 0.00 0.00 0.00 2.34
78 79 2.203877 AGAGGTGGGGTGCGGTTA 60.204 61.111 0.00 0.00 0.00 2.85
79 80 3.637273 GAGAGGTGGGGTGCGGTT 61.637 66.667 0.00 0.00 0.00 4.44
80 81 4.954118 TGAGAGGTGGGGTGCGGT 62.954 66.667 0.00 0.00 0.00 5.68
81 82 2.690653 TTTTGAGAGGTGGGGTGCGG 62.691 60.000 0.00 0.00 0.00 5.69
82 83 0.821711 TTTTTGAGAGGTGGGGTGCG 60.822 55.000 0.00 0.00 0.00 5.34
83 84 3.125520 TTTTTGAGAGGTGGGGTGC 57.874 52.632 0.00 0.00 0.00 5.01
98 99 8.778358 CAAGCTCTAGTCATTTGAGTACTTTTT 58.222 33.333 0.00 0.00 32.15 1.94
99 100 7.934120 ACAAGCTCTAGTCATTTGAGTACTTTT 59.066 33.333 0.00 0.00 32.15 2.27
100 101 7.445945 ACAAGCTCTAGTCATTTGAGTACTTT 58.554 34.615 0.00 0.00 32.15 2.66
101 102 6.998802 ACAAGCTCTAGTCATTTGAGTACTT 58.001 36.000 0.00 0.00 32.15 2.24
102 103 6.597832 ACAAGCTCTAGTCATTTGAGTACT 57.402 37.500 0.00 0.00 32.15 2.73
103 104 6.752815 GGTACAAGCTCTAGTCATTTGAGTAC 59.247 42.308 0.00 0.00 32.15 2.73
104 105 6.404403 CGGTACAAGCTCTAGTCATTTGAGTA 60.404 42.308 0.00 0.00 32.15 2.59
105 106 5.622460 CGGTACAAGCTCTAGTCATTTGAGT 60.622 44.000 0.00 0.00 32.15 3.41
106 107 4.800993 CGGTACAAGCTCTAGTCATTTGAG 59.199 45.833 0.00 0.00 0.00 3.02
107 108 4.381612 CCGGTACAAGCTCTAGTCATTTGA 60.382 45.833 0.00 0.00 0.00 2.69
108 109 3.865745 CCGGTACAAGCTCTAGTCATTTG 59.134 47.826 0.00 0.00 0.00 2.32
109 110 3.679083 GCCGGTACAAGCTCTAGTCATTT 60.679 47.826 1.90 0.00 0.00 2.32
110 111 2.159085 GCCGGTACAAGCTCTAGTCATT 60.159 50.000 1.90 0.00 0.00 2.57
111 112 1.409427 GCCGGTACAAGCTCTAGTCAT 59.591 52.381 1.90 0.00 0.00 3.06
112 113 0.815734 GCCGGTACAAGCTCTAGTCA 59.184 55.000 1.90 0.00 0.00 3.41
113 114 0.248539 CGCCGGTACAAGCTCTAGTC 60.249 60.000 1.90 0.00 0.00 2.59
114 115 0.679002 TCGCCGGTACAAGCTCTAGT 60.679 55.000 1.90 0.00 0.00 2.57
115 116 0.029567 CTCGCCGGTACAAGCTCTAG 59.970 60.000 1.90 0.00 0.00 2.43
116 117 0.679002 ACTCGCCGGTACAAGCTCTA 60.679 55.000 1.90 0.00 0.00 2.43
117 118 1.533469 AACTCGCCGGTACAAGCTCT 61.533 55.000 1.90 0.00 0.00 4.09
118 119 1.080025 AACTCGCCGGTACAAGCTC 60.080 57.895 1.90 0.00 0.00 4.09
119 120 1.374252 CAACTCGCCGGTACAAGCT 60.374 57.895 1.90 0.00 0.00 3.74
120 121 0.388907 TACAACTCGCCGGTACAAGC 60.389 55.000 1.90 0.00 0.00 4.01
121 122 1.990563 CTTACAACTCGCCGGTACAAG 59.009 52.381 1.90 0.00 0.00 3.16
122 123 1.340889 ACTTACAACTCGCCGGTACAA 59.659 47.619 1.90 0.00 0.00 2.41
123 124 0.961019 ACTTACAACTCGCCGGTACA 59.039 50.000 1.90 0.00 0.00 2.90
124 125 1.343506 CACTTACAACTCGCCGGTAC 58.656 55.000 1.90 0.00 0.00 3.34
125 126 0.244450 CCACTTACAACTCGCCGGTA 59.756 55.000 1.90 0.00 0.00 4.02
126 127 1.005394 CCACTTACAACTCGCCGGT 60.005 57.895 1.90 0.00 0.00 5.28
127 128 2.388232 GCCACTTACAACTCGCCGG 61.388 63.158 0.00 0.00 0.00 6.13
128 129 1.225376 TTGCCACTTACAACTCGCCG 61.225 55.000 0.00 0.00 0.00 6.46
129 130 0.237498 GTTGCCACTTACAACTCGCC 59.763 55.000 0.00 0.00 43.23 5.54
130 131 3.748021 GTTGCCACTTACAACTCGC 57.252 52.632 0.00 0.00 43.23 5.03
134 135 8.512138 AGTAATTATTGAGTTGCCACTTACAAC 58.488 33.333 0.00 0.00 46.18 3.32
135 136 8.630054 AGTAATTATTGAGTTGCCACTTACAA 57.370 30.769 0.00 0.00 31.22 2.41
136 137 7.064134 CGAGTAATTATTGAGTTGCCACTTACA 59.936 37.037 0.00 0.00 31.22 2.41
137 138 7.277098 TCGAGTAATTATTGAGTTGCCACTTAC 59.723 37.037 0.00 0.00 31.22 2.34
138 139 7.324935 TCGAGTAATTATTGAGTTGCCACTTA 58.675 34.615 0.00 0.00 31.22 2.24
139 140 6.170506 TCGAGTAATTATTGAGTTGCCACTT 58.829 36.000 0.00 0.00 31.22 3.16
140 141 5.730550 TCGAGTAATTATTGAGTTGCCACT 58.269 37.500 0.00 0.00 35.17 4.00
141 142 6.417191 TTCGAGTAATTATTGAGTTGCCAC 57.583 37.500 0.00 0.00 0.00 5.01
142 143 7.471721 CATTTCGAGTAATTATTGAGTTGCCA 58.528 34.615 0.00 0.00 0.00 4.92
143 144 6.414987 GCATTTCGAGTAATTATTGAGTTGCC 59.585 38.462 0.00 0.00 0.00 4.52
144 145 6.966632 TGCATTTCGAGTAATTATTGAGTTGC 59.033 34.615 0.00 2.32 0.00 4.17
145 146 7.164826 GCTGCATTTCGAGTAATTATTGAGTTG 59.835 37.037 0.00 0.00 0.00 3.16
146 147 7.189512 GCTGCATTTCGAGTAATTATTGAGTT 58.810 34.615 0.00 0.00 0.00 3.01
147 148 6.510157 CGCTGCATTTCGAGTAATTATTGAGT 60.510 38.462 0.00 0.00 0.00 3.41
148 149 5.842843 CGCTGCATTTCGAGTAATTATTGAG 59.157 40.000 0.00 0.00 0.00 3.02
149 150 5.293324 ACGCTGCATTTCGAGTAATTATTGA 59.707 36.000 9.61 0.00 0.00 2.57
150 151 5.501715 ACGCTGCATTTCGAGTAATTATTG 58.498 37.500 9.61 0.00 0.00 1.90
151 152 5.734855 ACGCTGCATTTCGAGTAATTATT 57.265 34.783 9.61 0.00 0.00 1.40
152 153 5.501715 CAACGCTGCATTTCGAGTAATTAT 58.498 37.500 9.61 0.00 0.00 1.28
153 154 4.201773 CCAACGCTGCATTTCGAGTAATTA 60.202 41.667 9.61 0.00 0.00 1.40
154 155 3.426159 CCAACGCTGCATTTCGAGTAATT 60.426 43.478 9.61 0.00 0.00 1.40
155 156 2.095853 CCAACGCTGCATTTCGAGTAAT 59.904 45.455 9.61 0.00 0.00 1.89
156 157 1.463056 CCAACGCTGCATTTCGAGTAA 59.537 47.619 9.61 0.00 0.00 2.24
157 158 1.075542 CCAACGCTGCATTTCGAGTA 58.924 50.000 9.61 0.00 0.00 2.59
158 159 1.868997 CCAACGCTGCATTTCGAGT 59.131 52.632 9.61 0.00 0.00 4.18
159 160 1.512734 GCCAACGCTGCATTTCGAG 60.513 57.895 9.61 3.00 0.00 4.04
160 161 2.560861 GCCAACGCTGCATTTCGA 59.439 55.556 9.61 0.00 0.00 3.71
161 162 2.504681 GGCCAACGCTGCATTTCG 60.505 61.111 0.00 0.00 34.44 3.46
162 163 2.125952 GGGCCAACGCTGCATTTC 60.126 61.111 4.39 0.00 34.44 2.17
163 164 2.916703 TGGGCCAACGCTGCATTT 60.917 55.556 2.13 0.00 34.44 2.32
164 165 3.376078 CTGGGCCAACGCTGCATT 61.376 61.111 8.04 0.00 34.44 3.56
169 170 4.323477 TAACGCTGGGCCAACGCT 62.323 61.111 27.82 19.23 34.44 5.07
170 171 3.799755 CTAACGCTGGGCCAACGC 61.800 66.667 27.82 17.94 0.00 4.84
171 172 3.799755 GCTAACGCTGGGCCAACG 61.800 66.667 26.47 26.47 0.00 4.10
172 173 3.440415 GGCTAACGCTGGGCCAAC 61.440 66.667 8.04 0.95 44.69 3.77
191 192 1.378762 GAACTAAGCTGGGCCCACA 59.621 57.895 24.45 0.00 0.00 4.17
201 202 4.870991 GTCAGGTGGTAAGATGAACTAAGC 59.129 45.833 0.00 0.00 0.00 3.09
206 207 3.003480 GCTGTCAGGTGGTAAGATGAAC 58.997 50.000 1.14 0.00 0.00 3.18
207 208 2.637382 TGCTGTCAGGTGGTAAGATGAA 59.363 45.455 1.14 0.00 0.00 2.57
212 213 4.184629 GACTATTGCTGTCAGGTGGTAAG 58.815 47.826 1.14 0.00 34.80 2.34
216 217 2.744202 GTTGACTATTGCTGTCAGGTGG 59.256 50.000 1.14 0.00 43.98 4.61
217 218 2.744202 GGTTGACTATTGCTGTCAGGTG 59.256 50.000 1.14 0.00 43.98 4.00
218 219 2.290323 GGGTTGACTATTGCTGTCAGGT 60.290 50.000 1.14 0.00 43.98 4.00
219 220 2.290260 TGGGTTGACTATTGCTGTCAGG 60.290 50.000 1.14 0.00 43.98 3.86
245 246 2.924290 GAGATCGGTGCTTCACTTGTAC 59.076 50.000 0.00 0.00 34.40 2.90
246 247 2.560981 TGAGATCGGTGCTTCACTTGTA 59.439 45.455 0.00 0.00 34.40 2.41
286 287 3.498082 GTTTATTGTCGGTGCATGGTTC 58.502 45.455 0.00 0.00 0.00 3.62
304 305 8.173130 AGATCGCTAATTTTAATTCGAACGTTT 58.827 29.630 0.46 0.00 31.41 3.60
308 309 9.359318 GAGAAGATCGCTAATTTTAATTCGAAC 57.641 33.333 0.00 2.48 31.41 3.95
315 316 6.255020 GTCCGTGAGAAGATCGCTAATTTTAA 59.745 38.462 0.00 0.00 36.21 1.52
319 320 3.130516 TGTCCGTGAGAAGATCGCTAATT 59.869 43.478 0.00 0.00 36.21 1.40
326 327 2.996621 CCACTTTGTCCGTGAGAAGATC 59.003 50.000 0.00 0.00 34.35 2.75
329 330 2.240493 ACCACTTTGTCCGTGAGAAG 57.760 50.000 0.00 0.00 34.35 2.85
338 339 0.236449 CGCCCGTTAACCACTTTGTC 59.764 55.000 0.00 0.00 0.00 3.18
347 348 2.802247 AGTTACAAAGTCGCCCGTTAAC 59.198 45.455 0.00 0.00 0.00 2.01
397 410 0.876777 TTCCACACTTGCGTACCGTG 60.877 55.000 1.42 1.42 34.92 4.94
412 425 1.614996 TTGCTTCCGCTTGAATTCCA 58.385 45.000 2.27 0.00 36.97 3.53
413 426 2.599659 CTTTGCTTCCGCTTGAATTCC 58.400 47.619 2.27 0.00 36.97 3.01
415 428 1.273327 CCCTTTGCTTCCGCTTGAATT 59.727 47.619 0.00 0.00 36.97 2.17
416 429 0.890683 CCCTTTGCTTCCGCTTGAAT 59.109 50.000 0.00 0.00 36.97 2.57
418 431 0.179004 TTCCCTTTGCTTCCGCTTGA 60.179 50.000 0.00 0.00 36.97 3.02
419 432 0.242017 CTTCCCTTTGCTTCCGCTTG 59.758 55.000 0.00 0.00 36.97 4.01
420 433 0.110486 TCTTCCCTTTGCTTCCGCTT 59.890 50.000 0.00 0.00 36.97 4.68
421 434 0.110486 TTCTTCCCTTTGCTTCCGCT 59.890 50.000 0.00 0.00 36.97 5.52
423 436 2.680339 GAGATTCTTCCCTTTGCTTCCG 59.320 50.000 0.00 0.00 0.00 4.30
424 437 3.690460 TGAGATTCTTCCCTTTGCTTCC 58.310 45.455 0.00 0.00 0.00 3.46
425 438 5.911378 AATGAGATTCTTCCCTTTGCTTC 57.089 39.130 0.00 0.00 0.00 3.86
426 439 5.776716 TCAAATGAGATTCTTCCCTTTGCTT 59.223 36.000 0.00 0.00 0.00 3.91
427 440 5.184671 GTCAAATGAGATTCTTCCCTTTGCT 59.815 40.000 0.00 0.00 0.00 3.91
428 441 5.405797 GTCAAATGAGATTCTTCCCTTTGC 58.594 41.667 0.00 0.00 0.00 3.68
429 442 5.477984 TGGTCAAATGAGATTCTTCCCTTTG 59.522 40.000 0.00 0.00 0.00 2.77
433 484 5.012893 ACTTGGTCAAATGAGATTCTTCCC 58.987 41.667 0.00 0.00 0.00 3.97
619 679 1.606601 GGGTTCTGGGTTCTTGGCC 60.607 63.158 0.00 0.00 0.00 5.36
731 822 4.740822 ATGGGGTGCCTTGCGTCC 62.741 66.667 0.00 0.00 0.00 4.79
747 838 2.167487 GAGAGGAGAGAGAAACGGCAAT 59.833 50.000 0.00 0.00 0.00 3.56
748 839 1.546476 GAGAGGAGAGAGAAACGGCAA 59.454 52.381 0.00 0.00 0.00 4.52
749 840 1.178276 GAGAGGAGAGAGAAACGGCA 58.822 55.000 0.00 0.00 0.00 5.69
750 841 1.404035 GAGAGAGGAGAGAGAAACGGC 59.596 57.143 0.00 0.00 0.00 5.68
751 842 2.021457 GGAGAGAGGAGAGAGAAACGG 58.979 57.143 0.00 0.00 0.00 4.44
752 843 1.668751 CGGAGAGAGGAGAGAGAAACG 59.331 57.143 0.00 0.00 0.00 3.60
753 844 1.404035 GCGGAGAGAGGAGAGAGAAAC 59.596 57.143 0.00 0.00 0.00 2.78
779 870 3.121030 CGGCGCAAACAGCTAGCT 61.121 61.111 12.68 12.68 42.61 3.32
802 893 1.146263 GCGCAGGGGTACAGCTAAT 59.854 57.895 0.30 0.00 0.00 1.73
913 1032 0.462225 TCGCTTGACAAAACCCACGA 60.462 50.000 0.00 0.00 0.00 4.35
928 1059 0.530650 CGCTCTCTCTCTCTCTCGCT 60.531 60.000 0.00 0.00 0.00 4.93
986 1117 4.559063 CCATCCTGGGCTCGGCTG 62.559 72.222 0.00 0.00 32.67 4.85
1154 1288 0.179048 CCCAGGCATCATTAGTCGCA 60.179 55.000 0.00 0.00 0.00 5.10
1159 1293 0.947244 GCGAACCCAGGCATCATTAG 59.053 55.000 0.00 0.00 0.00 1.73
1346 1486 7.930217 TCACAGAAGAGAAAAACGAAATCAAT 58.070 30.769 0.00 0.00 0.00 2.57
1354 1494 8.566008 AAAATCAATCACAGAAGAGAAAAACG 57.434 30.769 0.00 0.00 0.00 3.60
1444 1585 3.636231 CCGTTCAGCCCTGTCCCA 61.636 66.667 0.00 0.00 0.00 4.37
1477 1618 4.155709 TGAGTGAGAACAGATTGGAGAGT 58.844 43.478 0.00 0.00 0.00 3.24
1519 1660 0.460311 CGAGAATAGTGGGGCGAGTT 59.540 55.000 0.00 0.00 0.00 3.01
1522 1663 0.899720 AAACGAGAATAGTGGGGCGA 59.100 50.000 0.00 0.00 0.00 5.54
1523 1664 1.734163 AAAACGAGAATAGTGGGGCG 58.266 50.000 0.00 0.00 0.00 6.13
1524 1665 3.344515 AGAAAAACGAGAATAGTGGGGC 58.655 45.455 0.00 0.00 0.00 5.80
1525 1666 5.246307 AGAAGAAAAACGAGAATAGTGGGG 58.754 41.667 0.00 0.00 0.00 4.96
1532 1675 8.125448 CACAAAGAGAAGAAGAAAAACGAGAAT 58.875 33.333 0.00 0.00 0.00 2.40
1611 1754 6.295292 GCTGGTAAGGAATTGAACCTTGAATT 60.295 38.462 9.13 0.00 45.74 2.17
1837 2164 9.189156 ACATTCATAGTTGTGCATATAAAACCT 57.811 29.630 0.00 0.00 0.00 3.50
1866 2193 0.318955 GCCAGCAAAACAGAATGCGT 60.319 50.000 0.00 0.00 46.98 5.24
1867 2194 0.318869 TGCCAGCAAAACAGAATGCG 60.319 50.000 0.00 0.00 46.98 4.73
1874 2201 2.030371 TCAGACATTGCCAGCAAAACA 58.970 42.857 9.44 0.00 39.55 2.83
1903 2230 2.680339 GAGGTTGCTGCATAGAAAGGTC 59.320 50.000 1.84 0.00 0.00 3.85
1921 2248 0.604780 CCAGTGAGTTGTGGCTGAGG 60.605 60.000 0.00 0.00 0.00 3.86
1974 2301 4.816385 TGCCTTACAACTCTGAAAGTGAAG 59.184 41.667 0.00 0.00 38.58 3.02
2003 2330 6.442112 AGTTTGCAAATAAAGAGCAGAGTTC 58.558 36.000 16.21 0.00 39.72 3.01
2054 2385 4.586421 TGTGTGGATGACAAAATTGCCTAA 59.414 37.500 0.00 0.00 35.91 2.69
2055 2386 4.022416 GTGTGTGGATGACAAAATTGCCTA 60.022 41.667 0.00 0.00 35.91 3.93
2056 2387 2.964464 TGTGTGGATGACAAAATTGCCT 59.036 40.909 0.00 0.00 35.91 4.75
2090 2421 0.529555 GGTGCCACGTTGTGCAAAAT 60.530 50.000 5.80 0.00 31.34 1.82
2095 2426 1.234615 ACATAGGTGCCACGTTGTGC 61.235 55.000 0.00 0.00 31.34 4.57
2181 2512 3.485394 TGAACTGTGAAGCCAGCAAATA 58.515 40.909 0.00 0.00 35.83 1.40
2202 2533 5.044179 TGGTGGATTGAGAGGGTTTCATATT 60.044 40.000 0.00 0.00 0.00 1.28
2547 2902 8.534778 GTCAAATTGTGCTCTTAAGAAAAACAG 58.465 33.333 6.63 0.00 0.00 3.16
2550 2905 9.651913 AAAGTCAAATTGTGCTCTTAAGAAAAA 57.348 25.926 6.63 0.00 0.00 1.94
2705 3069 9.715121 ACGACAGGATGAGTTAAATAGTTAAAA 57.285 29.630 0.00 0.00 39.69 1.52
2745 3109 8.637986 TGTCAAAAATGAAAACTAGGTTAGCAT 58.362 29.630 0.00 0.00 0.00 3.79
3270 3634 1.736681 GCTGTCTGCAGACCATTCTTC 59.263 52.381 37.23 15.86 45.28 2.87
3366 3730 6.308015 TCATCCTTCCTTTTCCGAGATTTA 57.692 37.500 0.00 0.00 0.00 1.40
3554 3918 6.700960 CCAATCAAACAGCACTCAATTTAACA 59.299 34.615 0.00 0.00 0.00 2.41
3557 3921 5.304101 ACCCAATCAAACAGCACTCAATTTA 59.696 36.000 0.00 0.00 0.00 1.40
3624 3988 4.825085 TGTGAAACTGGGTTAATGAAGGTC 59.175 41.667 0.00 0.00 38.04 3.85
3845 4209 7.948034 AGCTCTTCACTACTAGATTTAGTGT 57.052 36.000 15.07 0.46 44.63 3.55
3920 4284 3.694043 ACAGGGTTTGCAGTTTTTGTT 57.306 38.095 0.00 0.00 0.00 2.83
3922 4286 2.935849 GGAACAGGGTTTGCAGTTTTTG 59.064 45.455 0.00 0.00 0.00 2.44
4363 4879 8.182227 GGTTTATGAGTAATAACAAGGACTTGC 58.818 37.037 11.73 0.00 44.03 4.01
4374 4890 9.146984 CACGAACTTGAGGTTTATGAGTAATAA 57.853 33.333 0.00 0.00 38.41 1.40
4443 4959 8.830201 AAATGCATAAAATAGTTTTGCACTCA 57.170 26.923 19.86 5.77 40.36 3.41
5053 5574 1.032014 GAACAACAGAGGGCAAGCAA 58.968 50.000 0.00 0.00 0.00 3.91
5098 5619 6.481313 GTGCATTATGCTCTTCATCAAGTAGA 59.519 38.462 18.44 0.00 45.31 2.59
5245 5766 4.345854 ACCTGGAACAACAAACCAAGTAA 58.654 39.130 0.00 0.00 38.70 2.24
5258 5779 4.444306 CCACTTCAGTAGAAACCTGGAACA 60.444 45.833 0.00 0.00 32.35 3.18
5385 5906 0.902984 TGTCTAGCGGCTTCCTTCCA 60.903 55.000 8.26 0.00 0.00 3.53
5424 5945 5.523916 GTGTAACGCACCAGAATCAGAATAT 59.476 40.000 0.00 0.00 42.10 1.28
5464 5986 0.106918 AACAGCCGTCCAAAGGTCAA 60.107 50.000 0.00 0.00 0.00 3.18
5474 5996 1.071605 CTAGAACTGCAACAGCCGTC 58.928 55.000 0.00 0.00 34.37 4.79
5581 6103 2.799126 TCGCAGGGTACATTCCATTT 57.201 45.000 0.00 0.00 0.00 2.32
5605 6127 2.046892 TCTGCAAAGCGGGAGAGC 60.047 61.111 0.00 0.00 35.34 4.09
5635 6157 3.199677 CAAAGACGGTACCTGAACACAA 58.800 45.455 10.90 0.00 0.00 3.33
5656 6178 5.940470 ACACAACTGAATATCTCTCCCAAAC 59.060 40.000 0.00 0.00 0.00 2.93
5664 6186 9.116067 ACTAGTCTCTACACAACTGAATATCTC 57.884 37.037 0.00 0.00 0.00 2.75
5679 6201 7.836479 ATGGTTATGGGTAACTAGTCTCTAC 57.164 40.000 0.00 0.00 40.06 2.59
5680 6202 9.529823 CATATGGTTATGGGTAACTAGTCTCTA 57.470 37.037 0.00 0.00 40.06 2.43
5681 6203 8.423906 CATATGGTTATGGGTAACTAGTCTCT 57.576 38.462 0.00 0.00 40.06 3.10
5721 6463 8.793592 AGGCGTGTTCTTTTCTTCTTTTATTAT 58.206 29.630 0.00 0.00 0.00 1.28
5723 6465 7.039313 AGGCGTGTTCTTTTCTTCTTTTATT 57.961 32.000 0.00 0.00 0.00 1.40
5738 6480 6.432107 TGAACAAAAACTATTAGGCGTGTTC 58.568 36.000 16.68 16.68 42.38 3.18
5740 6482 5.761234 TCTGAACAAAAACTATTAGGCGTGT 59.239 36.000 0.00 0.00 0.00 4.49
5741 6483 6.236017 TCTGAACAAAAACTATTAGGCGTG 57.764 37.500 0.00 0.00 0.00 5.34
5742 6484 7.361799 GGAATCTGAACAAAAACTATTAGGCGT 60.362 37.037 0.00 0.00 0.00 5.68
5744 6486 8.056407 AGGAATCTGAACAAAAACTATTAGGC 57.944 34.615 0.00 0.00 0.00 3.93
5768 6510 4.800993 CAGACTAGGCACGTTAGATTGAAG 59.199 45.833 0.00 0.00 0.00 3.02
5770 6512 4.014406 TCAGACTAGGCACGTTAGATTGA 58.986 43.478 0.00 1.27 0.00 2.57
5783 6525 9.988815 AGTACTTGCAATATTAATCAGACTAGG 57.011 33.333 0.00 0.00 0.00 3.02
6044 6816 5.012768 CCTGTAAGAAAACCCTAGTTCCTCA 59.987 44.000 0.00 0.00 31.73 3.86
6068 6840 0.390472 CTCCTTCACGTTCTGGAGCC 60.390 60.000 12.62 0.00 39.46 4.70
6089 6861 4.759183 GCTCAGAAGGAAATGTCTCTTGTT 59.241 41.667 0.00 0.00 0.00 2.83
6092 6864 4.630644 TGCTCAGAAGGAAATGTCTCTT 57.369 40.909 0.00 0.00 0.00 2.85
6141 6913 4.837093 ATTCTTGTATTTGACCCTCGGA 57.163 40.909 0.00 0.00 0.00 4.55
6142 6914 4.096382 CCAATTCTTGTATTTGACCCTCGG 59.904 45.833 0.00 0.00 0.00 4.63
6143 6915 4.096382 CCCAATTCTTGTATTTGACCCTCG 59.904 45.833 0.00 0.00 0.00 4.63
6186 6961 4.571984 TCAACTGTCTGAACAACTCATGTG 59.428 41.667 0.00 0.00 42.99 3.21
6307 7090 4.035208 ACGGTTGATTTGAGAACACAGTTC 59.965 41.667 1.77 1.77 0.00 3.01
6327 7110 2.666508 GACTAACATGCTGTACACACGG 59.333 50.000 0.00 0.00 0.00 4.94
6328 7111 2.341464 CGACTAACATGCTGTACACACG 59.659 50.000 0.00 0.00 0.00 4.49
6469 7252 8.397906 CAAAAGGTCTCGCATAATCATAGAAAA 58.602 33.333 0.00 0.00 0.00 2.29
6700 7502 3.448660 GGGTCTTTGATTTTGGCATAGCT 59.551 43.478 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.