Multiple sequence alignment - TraesCS6B01G199200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G199200 chr6B 100.000 2820 0 0 1 2820 238295178 238297997 0.000000e+00 5208
1 TraesCS6B01G199200 chr6A 87.663 1151 64 31 56 1180 181589715 181590813 0.000000e+00 1267
2 TraesCS6B01G199200 chr6A 85.420 679 47 15 1271 1899 181590872 181591548 0.000000e+00 658
3 TraesCS6B01G199200 chr6A 88.889 414 43 3 2410 2820 524758504 524758091 9.010000e-140 507
4 TraesCS6B01G199200 chr6A 88.406 414 45 3 2410 2820 481255206 481254793 1.950000e-136 496
5 TraesCS6B01G199200 chr6A 86.849 403 48 5 2010 2410 572592612 572593011 1.990000e-121 446
6 TraesCS6B01G199200 chr6A 85.995 407 51 6 2011 2414 572591598 572592001 5.580000e-117 431
7 TraesCS6B01G199200 chr6A 84.878 410 56 5 2003 2410 524758718 524758313 2.610000e-110 409
8 TraesCS6B01G199200 chr6D 90.502 916 46 17 996 1881 138969090 138969994 0.000000e+00 1171
9 TraesCS6B01G199200 chr6D 93.750 416 13 7 54 463 138967725 138968133 1.860000e-171 612
10 TraesCS6B01G199200 chr6D 87.941 539 21 26 459 979 138968296 138968808 1.870000e-166 595
11 TraesCS6B01G199200 chr6D 89.806 412 40 2 2410 2820 138970313 138970723 6.920000e-146 527
12 TraesCS6B01G199200 chr6D 87.981 416 43 6 2410 2820 357352258 357352671 4.220000e-133 484
13 TraesCS6B01G199200 chr6D 85.645 411 53 6 2002 2410 138970097 138970503 7.220000e-116 427
14 TraesCS6B01G199200 chr3B 89.372 414 39 5 2410 2820 270950529 270950940 1.500000e-142 516
15 TraesCS6B01G199200 chr3A 89.320 412 37 7 2413 2819 65868072 65867663 6.970000e-141 510
16 TraesCS6B01G199200 chr3A 87.952 415 46 3 2410 2820 479765555 479765141 1.170000e-133 486
17 TraesCS6B01G199200 chr3D 88.889 414 42 4 2410 2820 512503355 512502943 9.010000e-140 507
18 TraesCS6B01G199200 chr3D 85.714 399 54 3 2009 2406 512503565 512503169 4.340000e-113 418
19 TraesCS6B01G199200 chr3D 85.222 406 57 3 2003 2407 382944680 382945083 5.620000e-112 414
20 TraesCS6B01G199200 chr7D 88.406 414 45 3 2410 2820 233198591 233198178 1.950000e-136 496
21 TraesCS6B01G199200 chr1A 86.318 402 49 6 2012 2410 381127098 381127496 1.550000e-117 433
22 TraesCS6B01G199200 chr5D 86.035 401 53 3 2011 2410 386176320 386176718 7.220000e-116 427
23 TraesCS6B01G199200 chr7B 84.729 406 60 2 2003 2407 221322041 221322445 3.380000e-109 405


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G199200 chr6B 238295178 238297997 2819 False 5208.0 5208 100.0000 1 2820 1 chr6B.!!$F1 2819
1 TraesCS6B01G199200 chr6A 181589715 181591548 1833 False 962.5 1267 86.5415 56 1899 2 chr6A.!!$F1 1843
2 TraesCS6B01G199200 chr6A 524758091 524758718 627 True 458.0 507 86.8835 2003 2820 2 chr6A.!!$R2 817
3 TraesCS6B01G199200 chr6A 572591598 572593011 1413 False 438.5 446 86.4220 2010 2414 2 chr6A.!!$F2 404
4 TraesCS6B01G199200 chr6D 138967725 138970723 2998 False 666.4 1171 89.5288 54 2820 5 chr6D.!!$F2 2766
5 TraesCS6B01G199200 chr3D 512502943 512503565 622 True 462.5 507 87.3015 2009 2820 2 chr3D.!!$R1 811

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
930 1128 0.107312 AGGCCTAGCAGTGCAATCAG 60.107 55.0 19.2 8.36 0.0 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2799 3362 0.179 ATTTCGTAGGCAGGAGCAGG 59.821 55.0 0.0 0.0 44.61 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.179265 GTGCGCGTATGCTCACGT 61.179 61.111 13.83 0.00 45.72 4.49
20 21 1.870458 GTGCGCGTATGCTCACGTA 60.870 57.895 13.83 0.00 45.72 3.57
21 22 1.870458 TGCGCGTATGCTCACGTAC 60.870 57.895 8.43 5.64 43.79 3.67
22 23 1.870458 GCGCGTATGCTCACGTACA 60.870 57.895 8.43 0.00 43.79 2.90
23 24 1.798368 GCGCGTATGCTCACGTACAG 61.798 60.000 8.43 0.00 43.79 2.74
24 25 0.522705 CGCGTATGCTCACGTACAGT 60.523 55.000 5.20 0.00 43.79 3.55
25 26 1.189403 GCGTATGCTCACGTACAGTC 58.811 55.000 11.37 0.00 43.79 3.51
26 27 1.466866 GCGTATGCTCACGTACAGTCA 60.467 52.381 11.37 0.00 43.79 3.41
27 28 2.858839 CGTATGCTCACGTACAGTCAA 58.141 47.619 0.00 0.00 38.04 3.18
28 29 3.239254 CGTATGCTCACGTACAGTCAAA 58.761 45.455 0.00 0.00 38.04 2.69
29 30 3.300853 CGTATGCTCACGTACAGTCAAAG 59.699 47.826 0.00 0.00 38.04 2.77
30 31 3.660501 ATGCTCACGTACAGTCAAAGA 57.339 42.857 0.00 0.00 0.00 2.52
31 32 3.013276 TGCTCACGTACAGTCAAAGAG 57.987 47.619 0.00 0.00 0.00 2.85
32 33 2.621526 TGCTCACGTACAGTCAAAGAGA 59.378 45.455 0.00 0.00 0.00 3.10
33 34 3.067601 TGCTCACGTACAGTCAAAGAGAA 59.932 43.478 0.00 0.00 0.00 2.87
34 35 3.425858 GCTCACGTACAGTCAAAGAGAAC 59.574 47.826 0.00 0.00 0.00 3.01
35 36 3.624900 TCACGTACAGTCAAAGAGAACG 58.375 45.455 0.00 0.00 35.17 3.95
36 37 2.724690 CACGTACAGTCAAAGAGAACGG 59.275 50.000 0.00 0.00 33.44 4.44
37 38 2.620115 ACGTACAGTCAAAGAGAACGGA 59.380 45.455 0.00 0.00 33.44 4.69
38 39 3.067180 ACGTACAGTCAAAGAGAACGGAA 59.933 43.478 0.00 0.00 33.44 4.30
39 40 4.235360 CGTACAGTCAAAGAGAACGGAAT 58.765 43.478 0.00 0.00 0.00 3.01
40 41 4.090066 CGTACAGTCAAAGAGAACGGAATG 59.910 45.833 0.00 0.00 0.00 2.67
41 42 4.073293 ACAGTCAAAGAGAACGGAATGT 57.927 40.909 0.00 0.00 34.20 2.71
42 43 3.809832 ACAGTCAAAGAGAACGGAATGTG 59.190 43.478 0.00 0.00 37.22 3.21
43 44 3.187227 CAGTCAAAGAGAACGGAATGTGG 59.813 47.826 0.00 0.00 0.00 4.17
44 45 2.095718 GTCAAAGAGAACGGAATGTGGC 60.096 50.000 0.00 0.00 0.00 5.01
45 46 1.879380 CAAAGAGAACGGAATGTGGCA 59.121 47.619 0.00 0.00 0.00 4.92
46 47 1.523758 AAGAGAACGGAATGTGGCAC 58.476 50.000 11.55 11.55 0.00 5.01
47 48 0.321653 AGAGAACGGAATGTGGCACC 60.322 55.000 16.26 0.00 0.00 5.01
59 60 1.134128 TGTGGCACCGATATGAGCATT 60.134 47.619 16.26 0.00 0.00 3.56
158 160 0.762418 TGGAAAGAGGAGACGGCAAA 59.238 50.000 0.00 0.00 0.00 3.68
270 273 1.826024 CCCAGCGCAAGGATCTAGT 59.174 57.895 19.17 0.00 38.28 2.57
271 274 1.040646 CCCAGCGCAAGGATCTAGTA 58.959 55.000 19.17 0.00 38.28 1.82
272 275 1.000283 CCCAGCGCAAGGATCTAGTAG 60.000 57.143 19.17 0.00 38.28 2.57
273 276 1.683917 CCAGCGCAAGGATCTAGTAGT 59.316 52.381 11.47 0.00 38.28 2.73
438 444 1.768077 GCTCCCAGCTCCCCTGTAT 60.768 63.158 0.00 0.00 40.06 2.29
457 631 2.452295 TACCAAACCATCGTGCGTAA 57.548 45.000 0.00 0.00 0.00 3.18
475 649 3.422603 CGTAAACTACGTGTTGATGCACC 60.423 47.826 0.00 0.00 46.41 5.01
493 667 1.278238 CCGTACTGCGATCCTTCAAC 58.722 55.000 0.00 0.00 44.77 3.18
497 671 2.376808 ACTGCGATCCTTCAACAGAG 57.623 50.000 0.00 0.00 32.59 3.35
550 727 4.953868 TCAACGTCCGCCACACCG 62.954 66.667 0.00 0.00 0.00 4.94
605 782 1.546589 TTACGTGTTCCTCGGGGCAT 61.547 55.000 0.00 0.00 0.00 4.40
699 879 4.783621 TGCATGGGGCTCTGCGAC 62.784 66.667 0.00 0.00 45.15 5.19
742 922 2.420547 CCTTGATTGCTGAATCCGGAGA 60.421 50.000 11.34 0.00 37.74 3.71
888 1070 5.517770 CCTATAGAAAACCAAGTTCGTACCG 59.482 44.000 0.00 0.00 0.00 4.02
905 1087 1.972795 ACCGCCTGGAACTACTACAAA 59.027 47.619 0.00 0.00 39.21 2.83
906 1088 2.028385 ACCGCCTGGAACTACTACAAAG 60.028 50.000 0.00 0.00 39.21 2.77
909 1091 3.678548 CGCCTGGAACTACTACAAAGAAC 59.321 47.826 0.00 0.00 0.00 3.01
910 1092 4.001652 GCCTGGAACTACTACAAAGAACC 58.998 47.826 0.00 0.00 0.00 3.62
911 1093 4.504340 GCCTGGAACTACTACAAAGAACCA 60.504 45.833 0.00 0.00 0.00 3.67
912 1094 5.238583 CCTGGAACTACTACAAAGAACCAG 58.761 45.833 0.00 0.00 38.81 4.00
920 1118 0.771127 ACAAAGAACCAGGCCTAGCA 59.229 50.000 3.98 0.00 0.00 3.49
922 1120 1.068121 AAAGAACCAGGCCTAGCAGT 58.932 50.000 3.98 0.00 0.00 4.40
923 1121 0.326264 AAGAACCAGGCCTAGCAGTG 59.674 55.000 3.98 0.00 0.00 3.66
930 1128 0.107312 AGGCCTAGCAGTGCAATCAG 60.107 55.000 19.20 8.36 0.00 2.90
979 1177 1.528292 CCGATCTCGCCTTCCCCTAG 61.528 65.000 0.00 0.00 38.18 3.02
980 1178 1.668867 GATCTCGCCTTCCCCTAGC 59.331 63.158 0.00 0.00 0.00 3.42
985 1183 4.243008 GCCTTCCCCTAGCGAGGC 62.243 72.222 7.47 7.76 46.81 4.70
986 1184 2.444895 CCTTCCCCTAGCGAGGCT 60.445 66.667 7.47 0.00 42.21 4.58
988 1186 0.759436 CCTTCCCCTAGCGAGGCTTA 60.759 60.000 7.47 0.00 42.21 3.09
989 1187 0.676736 CTTCCCCTAGCGAGGCTTAG 59.323 60.000 7.47 0.00 42.21 2.18
990 1188 1.400530 TTCCCCTAGCGAGGCTTAGC 61.401 60.000 7.47 7.68 42.21 3.09
991 1189 1.834822 CCCCTAGCGAGGCTTAGCT 60.835 63.158 19.53 19.53 46.53 3.32
992 1190 1.403687 CCCCTAGCGAGGCTTAGCTT 61.404 60.000 20.51 0.00 44.15 3.74
993 1191 1.329256 CCCTAGCGAGGCTTAGCTTA 58.671 55.000 20.51 8.56 44.15 3.09
1025 1497 6.976934 ATAAAAATAGCCCCGTCATTTCAT 57.023 33.333 0.00 0.00 0.00 2.57
1039 1511 4.460382 GTCATTTCATCCTTGCTTTCTCCA 59.540 41.667 0.00 0.00 0.00 3.86
1042 1514 6.211986 TCATTTCATCCTTGCTTTCTCCATTT 59.788 34.615 0.00 0.00 0.00 2.32
1044 1516 4.665451 TCATCCTTGCTTTCTCCATTTCA 58.335 39.130 0.00 0.00 0.00 2.69
1045 1517 4.703575 TCATCCTTGCTTTCTCCATTTCAG 59.296 41.667 0.00 0.00 0.00 3.02
1046 1518 2.821969 TCCTTGCTTTCTCCATTTCAGC 59.178 45.455 0.00 0.00 0.00 4.26
1047 1519 2.094338 CCTTGCTTTCTCCATTTCAGCC 60.094 50.000 0.00 0.00 0.00 4.85
1048 1520 2.592102 TGCTTTCTCCATTTCAGCCT 57.408 45.000 0.00 0.00 0.00 4.58
1049 1521 2.440409 TGCTTTCTCCATTTCAGCCTC 58.560 47.619 0.00 0.00 0.00 4.70
1052 1524 2.680312 TTCTCCATTTCAGCCTCGAG 57.320 50.000 5.13 5.13 0.00 4.04
1085 1557 1.200948 AGAGTTCGGTAGTGCGGTTAC 59.799 52.381 0.00 0.00 0.00 2.50
1086 1558 1.200948 GAGTTCGGTAGTGCGGTTACT 59.799 52.381 0.00 0.00 34.71 2.24
1087 1559 2.420022 GAGTTCGGTAGTGCGGTTACTA 59.580 50.000 0.00 0.00 32.19 1.82
1204 1679 2.030562 CGCCGACACCAAGGTTCT 59.969 61.111 0.00 0.00 0.00 3.01
1277 1752 2.172483 ATTGTCACCGCCGCTCTCTT 62.172 55.000 0.00 0.00 0.00 2.85
1320 1795 1.380785 ACCGGCGACCAAGGAGATA 60.381 57.895 9.30 0.00 0.00 1.98
1348 1823 2.441532 CAAGCTGGCCTGGATGGG 60.442 66.667 12.06 0.00 36.00 4.00
1355 1830 2.522680 GCCTGGATGGGAATGGCC 60.523 66.667 0.00 0.00 37.81 5.36
1374 1849 1.177401 CCCTGCAAAGGGTCTAAAGC 58.823 55.000 2.74 0.00 44.08 3.51
1429 1904 2.299297 ACTCTAACCGTTTCAGGACCAG 59.701 50.000 0.00 0.00 34.73 4.00
1439 1914 4.497507 CGTTTCAGGACCAGAAAGTTTTCC 60.498 45.833 12.01 0.00 37.92 3.13
1444 1919 2.806818 GGACCAGAAAGTTTTCCTCGAC 59.193 50.000 1.16 0.00 37.92 4.20
1457 1932 0.250234 CCTCGACTGCCAAGAATCCA 59.750 55.000 0.00 0.00 0.00 3.41
1470 1945 2.918230 GAATCCATTCGACGGCCGGT 62.918 60.000 31.76 15.52 39.14 5.28
1495 1970 0.035036 TTCACCGCCGATTACCACAA 59.965 50.000 0.00 0.00 0.00 3.33
1582 2061 0.111253 AGCTAAGCTGGTTGGTTGCT 59.889 50.000 1.72 4.24 37.57 3.91
1634 2118 9.852091 AACAGTAACTACTAAGCTGTATAACAC 57.148 33.333 0.00 0.00 39.19 3.32
1834 2366 8.941977 CATAAGCTGTTAATTAACTGTGTACCA 58.058 33.333 26.42 12.99 37.43 3.25
1835 2367 7.811117 AAGCTGTTAATTAACTGTGTACCAA 57.189 32.000 26.42 7.70 37.43 3.67
1882 2414 2.224113 GGGTACGTTGTCCTCACAAGAA 60.224 50.000 0.00 0.00 43.42 2.52
1883 2415 3.460103 GGTACGTTGTCCTCACAAGAAA 58.540 45.455 0.00 0.00 43.42 2.52
1884 2416 3.493503 GGTACGTTGTCCTCACAAGAAAG 59.506 47.826 0.00 0.00 43.42 2.62
1885 2417 1.940613 ACGTTGTCCTCACAAGAAAGC 59.059 47.619 0.00 0.00 43.42 3.51
1886 2418 1.939934 CGTTGTCCTCACAAGAAAGCA 59.060 47.619 0.00 0.00 43.42 3.91
1887 2419 2.354510 CGTTGTCCTCACAAGAAAGCAA 59.645 45.455 0.00 0.00 43.42 3.91
1888 2420 3.003689 CGTTGTCCTCACAAGAAAGCAAT 59.996 43.478 0.00 0.00 43.42 3.56
1889 2421 4.293415 GTTGTCCTCACAAGAAAGCAATG 58.707 43.478 0.00 0.00 43.42 2.82
1890 2422 2.294233 TGTCCTCACAAGAAAGCAATGC 59.706 45.455 0.00 0.00 0.00 3.56
1891 2423 2.555757 GTCCTCACAAGAAAGCAATGCT 59.444 45.455 0.00 0.00 42.56 3.79
1892 2424 6.902182 TTGTCCTCACAAGAAAGCAATGCTT 61.902 40.000 15.60 15.60 43.24 3.91
1894 2426 9.671467 TTGTCCTCACAAGAAAGCAATGCTTTT 62.671 37.037 30.55 18.71 46.23 2.27
1944 2476 3.659092 TTTGCCGTTCCAGCTGCG 61.659 61.111 8.66 6.73 0.00 5.18
1952 2484 0.455633 GTTCCAGCTGCGATGCAAAG 60.456 55.000 8.66 0.00 38.41 2.77
1953 2485 2.202570 CCAGCTGCGATGCAAAGC 60.203 61.111 8.66 9.49 38.41 3.51
1954 2486 2.202570 CAGCTGCGATGCAAAGCC 60.203 61.111 0.00 0.63 38.41 4.35
1955 2487 2.674033 AGCTGCGATGCAAAGCCA 60.674 55.556 13.16 2.58 38.41 4.75
1956 2488 2.505557 GCTGCGATGCAAAGCCAC 60.506 61.111 13.16 3.05 38.41 5.01
1957 2489 2.202388 CTGCGATGCAAAGCCACG 60.202 61.111 13.16 3.94 38.41 4.94
1958 2490 2.969806 CTGCGATGCAAAGCCACGT 61.970 57.895 13.16 0.00 38.41 4.49
1959 2491 2.255252 GCGATGCAAAGCCACGTT 59.745 55.556 5.56 0.00 0.00 3.99
1960 2492 1.371635 GCGATGCAAAGCCACGTTT 60.372 52.632 5.56 0.00 0.00 3.60
1962 2494 1.467374 GCGATGCAAAGCCACGTTTAT 60.467 47.619 5.56 0.00 0.00 1.40
1964 2496 1.919918 GATGCAAAGCCACGTTTATGC 59.080 47.619 0.00 0.00 0.00 3.14
1973 2505 2.364632 CCACGTTTATGCCATCTCCAA 58.635 47.619 0.00 0.00 0.00 3.53
1974 2506 2.097466 CCACGTTTATGCCATCTCCAAC 59.903 50.000 0.00 0.00 0.00 3.77
1980 2512 2.877691 GCCATCTCCAACGGCAAC 59.122 61.111 0.00 0.00 45.52 4.17
1981 2513 1.971167 GCCATCTCCAACGGCAACA 60.971 57.895 0.00 0.00 45.52 3.33
1983 2515 1.497278 CATCTCCAACGGCAACACG 59.503 57.895 0.00 0.00 40.31 4.49
1994 2526 3.880610 ACGGCAACACGTAAATTTTCTC 58.119 40.909 0.00 0.00 46.58 2.87
1997 2529 3.254903 GGCAACACGTAAATTTTCTCCCT 59.745 43.478 0.00 0.00 0.00 4.20
1999 2531 4.708601 CAACACGTAAATTTTCTCCCTCG 58.291 43.478 0.00 0.00 0.00 4.63
2008 2565 5.740290 AATTTTCTCCCTCGTTCAGTCTA 57.260 39.130 0.00 0.00 0.00 2.59
2013 2570 1.064906 TCCCTCGTTCAGTCTACGGAT 60.065 52.381 0.00 0.00 39.38 4.18
2030 2587 4.853142 TACGGATGCGGGAGGCCT 62.853 66.667 3.86 3.86 42.61 5.19
2047 2605 1.258445 CCTCCTCCAGCCGTAACTGT 61.258 60.000 0.00 0.00 35.83 3.55
2074 2632 7.631915 ACATTTCAAACCGCATTTTAACTAC 57.368 32.000 0.00 0.00 0.00 2.73
2075 2633 7.430441 ACATTTCAAACCGCATTTTAACTACT 58.570 30.769 0.00 0.00 0.00 2.57
2079 2637 3.323751 ACCGCATTTTAACTACTCGGT 57.676 42.857 0.00 0.00 43.04 4.69
2097 2655 2.351253 CGGTCGAAATTCATGCAAACCA 60.351 45.455 0.00 0.00 0.00 3.67
2101 2659 2.736192 CGAAATTCATGCAAACCAACCC 59.264 45.455 0.00 0.00 0.00 4.11
2118 2676 6.015918 ACCAACCCATATTCATCAAAGTTCA 58.984 36.000 0.00 0.00 0.00 3.18
2123 2681 9.699410 AACCCATATTCATCAAAGTTCAGATAA 57.301 29.630 0.00 0.00 0.00 1.75
2124 2682 9.699410 ACCCATATTCATCAAAGTTCAGATAAA 57.301 29.630 0.00 0.00 0.00 1.40
2200 2758 7.285629 ACAATGTCTCTAATTCGACTAGATCCA 59.714 37.037 0.00 5.05 0.00 3.41
2202 2760 5.239744 TGTCTCTAATTCGACTAGATCCAGC 59.760 44.000 0.00 0.00 0.00 4.85
2252 2810 6.765036 GGATCATGTCATTTCACACATACTCT 59.235 38.462 0.00 0.00 31.78 3.24
2253 2811 7.042187 GGATCATGTCATTTCACACATACTCTC 60.042 40.741 0.00 0.00 31.78 3.20
2254 2812 6.700352 TCATGTCATTTCACACATACTCTCA 58.300 36.000 0.00 0.00 31.78 3.27
2280 2839 2.158769 AGCTTCATCCAACAGTGTGTGA 60.159 45.455 0.00 0.00 0.00 3.58
2281 2840 2.816087 GCTTCATCCAACAGTGTGTGAT 59.184 45.455 0.00 0.00 0.00 3.06
2282 2841 4.002982 GCTTCATCCAACAGTGTGTGATA 58.997 43.478 0.00 0.00 0.00 2.15
2354 2913 7.426410 CGGGCTACATATAATGTATAGACCAG 58.574 42.308 12.88 4.72 44.08 4.00
2373 2933 8.579850 AGACCAGCATTGAGTAAATAAATCAA 57.420 30.769 0.00 0.00 37.36 2.57
2374 2934 9.193806 AGACCAGCATTGAGTAAATAAATCAAT 57.806 29.630 0.00 0.00 42.81 2.57
2375 2935 9.807649 GACCAGCATTGAGTAAATAAATCAATT 57.192 29.630 0.00 0.00 40.71 2.32
2392 2952 8.807667 AAATCAATTAACAAGTTGAGCAAGAG 57.192 30.769 10.54 0.00 37.72 2.85
2393 2953 6.317789 TCAATTAACAAGTTGAGCAAGAGG 57.682 37.500 10.54 0.00 31.24 3.69
2394 2954 6.061441 TCAATTAACAAGTTGAGCAAGAGGA 58.939 36.000 10.54 0.00 31.24 3.71
2395 2955 6.545666 TCAATTAACAAGTTGAGCAAGAGGAA 59.454 34.615 10.54 0.00 31.24 3.36
2396 2956 6.566197 ATTAACAAGTTGAGCAAGAGGAAG 57.434 37.500 10.54 0.00 0.00 3.46
2397 2957 3.567478 ACAAGTTGAGCAAGAGGAAGT 57.433 42.857 10.54 0.00 0.00 3.01
2398 2958 4.689612 ACAAGTTGAGCAAGAGGAAGTA 57.310 40.909 10.54 0.00 0.00 2.24
2399 2959 5.036117 ACAAGTTGAGCAAGAGGAAGTAA 57.964 39.130 10.54 0.00 0.00 2.24
2400 2960 5.437060 ACAAGTTGAGCAAGAGGAAGTAAA 58.563 37.500 10.54 0.00 0.00 2.01
2401 2961 5.885912 ACAAGTTGAGCAAGAGGAAGTAAAA 59.114 36.000 10.54 0.00 0.00 1.52
2402 2962 6.183360 ACAAGTTGAGCAAGAGGAAGTAAAAC 60.183 38.462 10.54 0.00 0.00 2.43
2403 2963 5.685728 AGTTGAGCAAGAGGAAGTAAAACT 58.314 37.500 0.00 0.00 0.00 2.66
2404 2964 6.122964 AGTTGAGCAAGAGGAAGTAAAACTT 58.877 36.000 0.00 0.00 41.95 2.66
2405 2965 7.280356 AGTTGAGCAAGAGGAAGTAAAACTTA 58.720 34.615 0.00 0.00 38.80 2.24
2406 2966 7.226918 AGTTGAGCAAGAGGAAGTAAAACTTAC 59.773 37.037 0.00 0.00 38.80 2.34
2407 2967 5.694910 TGAGCAAGAGGAAGTAAAACTTACG 59.305 40.000 0.00 0.00 43.79 3.18
2408 2968 5.850614 AGCAAGAGGAAGTAAAACTTACGA 58.149 37.500 0.00 0.00 43.79 3.43
2409 2969 6.465084 AGCAAGAGGAAGTAAAACTTACGAT 58.535 36.000 0.00 0.00 43.79 3.73
2410 2970 6.935208 AGCAAGAGGAAGTAAAACTTACGATT 59.065 34.615 0.00 0.00 43.79 3.34
2411 2971 7.117956 AGCAAGAGGAAGTAAAACTTACGATTC 59.882 37.037 0.00 0.00 43.79 2.52
2412 2972 7.095355 GCAAGAGGAAGTAAAACTTACGATTCA 60.095 37.037 0.00 0.00 43.79 2.57
2413 2973 8.936864 CAAGAGGAAGTAAAACTTACGATTCAT 58.063 33.333 0.00 0.00 43.79 2.57
2414 2974 8.480643 AGAGGAAGTAAAACTTACGATTCATG 57.519 34.615 0.00 0.00 43.79 3.07
2415 2975 8.311836 AGAGGAAGTAAAACTTACGATTCATGA 58.688 33.333 0.00 0.00 43.79 3.07
2416 2976 8.842358 AGGAAGTAAAACTTACGATTCATGAA 57.158 30.769 11.26 11.26 43.79 2.57
2417 2977 8.718734 AGGAAGTAAAACTTACGATTCATGAAC 58.281 33.333 11.07 4.22 43.79 3.18
2418 2978 7.686938 GGAAGTAAAACTTACGATTCATGAACG 59.313 37.037 21.09 21.09 38.80 3.95
2419 2979 7.057149 AGTAAAACTTACGATTCATGAACGG 57.943 36.000 24.23 16.51 0.00 4.44
2420 2980 6.869913 AGTAAAACTTACGATTCATGAACGGA 59.130 34.615 24.23 17.97 0.00 4.69
2421 2981 6.737254 AAAACTTACGATTCATGAACGGAT 57.263 33.333 24.23 13.23 0.00 4.18
2422 2982 5.968387 AACTTACGATTCATGAACGGATC 57.032 39.130 24.23 13.46 0.00 3.36
2423 2983 5.006153 ACTTACGATTCATGAACGGATCA 57.994 39.130 24.23 9.60 43.67 2.92
2434 2994 4.944962 TGAACGGATCATGTCATTTCAC 57.055 40.909 0.00 0.00 31.50 3.18
2435 2995 4.322567 TGAACGGATCATGTCATTTCACA 58.677 39.130 0.00 0.00 31.50 3.58
2436 2996 4.154015 TGAACGGATCATGTCATTTCACAC 59.846 41.667 0.00 0.00 31.50 3.82
2437 2997 3.673902 ACGGATCATGTCATTTCACACA 58.326 40.909 0.00 0.00 0.00 3.72
2438 2998 4.264253 ACGGATCATGTCATTTCACACAT 58.736 39.130 0.00 0.00 33.29 3.21
2439 2999 5.427378 ACGGATCATGTCATTTCACACATA 58.573 37.500 0.00 0.00 31.78 2.29
2440 3000 5.294306 ACGGATCATGTCATTTCACACATAC 59.706 40.000 0.00 0.00 31.78 2.39
2441 3001 5.525012 CGGATCATGTCATTTCACACATACT 59.475 40.000 0.00 0.00 31.78 2.12
2442 3002 6.292542 CGGATCATGTCATTTCACACATACTC 60.293 42.308 0.00 0.00 31.78 2.59
2443 3003 6.765036 GGATCATGTCATTTCACACATACTCT 59.235 38.462 0.00 0.00 31.78 3.24
2444 3004 7.042187 GGATCATGTCATTTCACACATACTCTC 60.042 40.741 0.00 0.00 31.78 3.20
2445 3005 6.700352 TCATGTCATTTCACACATACTCTCA 58.300 36.000 0.00 0.00 31.78 3.27
2446 3006 6.591448 TCATGTCATTTCACACATACTCTCAC 59.409 38.462 0.00 0.00 31.78 3.51
2447 3007 6.101650 TGTCATTTCACACATACTCTCACT 57.898 37.500 0.00 0.00 0.00 3.41
2448 3008 6.524734 TGTCATTTCACACATACTCTCACTT 58.475 36.000 0.00 0.00 0.00 3.16
2449 3009 6.646653 TGTCATTTCACACATACTCTCACTTC 59.353 38.462 0.00 0.00 0.00 3.01
2450 3010 6.646653 GTCATTTCACACATACTCTCACTTCA 59.353 38.462 0.00 0.00 0.00 3.02
2451 3011 6.870439 TCATTTCACACATACTCTCACTTCAG 59.130 38.462 0.00 0.00 0.00 3.02
2452 3012 4.179926 TCACACATACTCTCACTTCAGC 57.820 45.455 0.00 0.00 0.00 4.26
2453 3013 3.829026 TCACACATACTCTCACTTCAGCT 59.171 43.478 0.00 0.00 0.00 4.24
2454 3014 4.281941 TCACACATACTCTCACTTCAGCTT 59.718 41.667 0.00 0.00 0.00 3.74
2455 3015 4.624882 CACACATACTCTCACTTCAGCTTC 59.375 45.833 0.00 0.00 0.00 3.86
2456 3016 4.281941 ACACATACTCTCACTTCAGCTTCA 59.718 41.667 0.00 0.00 0.00 3.02
2457 3017 5.046735 ACACATACTCTCACTTCAGCTTCAT 60.047 40.000 0.00 0.00 0.00 2.57
2458 3018 5.519566 CACATACTCTCACTTCAGCTTCATC 59.480 44.000 0.00 0.00 0.00 2.92
2459 3019 3.608316 ACTCTCACTTCAGCTTCATCC 57.392 47.619 0.00 0.00 0.00 3.51
2460 3020 2.902486 ACTCTCACTTCAGCTTCATCCA 59.098 45.455 0.00 0.00 0.00 3.41
2461 3021 3.326006 ACTCTCACTTCAGCTTCATCCAA 59.674 43.478 0.00 0.00 0.00 3.53
2462 3022 3.668447 TCTCACTTCAGCTTCATCCAAC 58.332 45.455 0.00 0.00 0.00 3.77
2463 3023 3.071457 TCTCACTTCAGCTTCATCCAACA 59.929 43.478 0.00 0.00 0.00 3.33
2464 3024 3.405831 TCACTTCAGCTTCATCCAACAG 58.594 45.455 0.00 0.00 0.00 3.16
2465 3025 3.144506 CACTTCAGCTTCATCCAACAGT 58.855 45.455 0.00 0.00 0.00 3.55
2466 3026 3.058432 CACTTCAGCTTCATCCAACAGTG 60.058 47.826 0.00 0.00 0.00 3.66
2467 3027 2.936919 TCAGCTTCATCCAACAGTGT 57.063 45.000 0.00 0.00 0.00 3.55
2468 3028 2.497138 TCAGCTTCATCCAACAGTGTG 58.503 47.619 0.00 0.00 0.00 3.82
2469 3029 2.158769 TCAGCTTCATCCAACAGTGTGT 60.159 45.455 0.00 0.00 0.00 3.72
2470 3030 2.031420 CAGCTTCATCCAACAGTGTGTG 60.031 50.000 0.00 0.00 0.00 3.82
2471 3031 2.158769 AGCTTCATCCAACAGTGTGTGA 60.159 45.455 0.00 0.00 0.00 3.58
2472 3032 2.816087 GCTTCATCCAACAGTGTGTGAT 59.184 45.455 0.00 0.00 0.00 3.06
2473 3033 4.002982 GCTTCATCCAACAGTGTGTGATA 58.997 43.478 0.00 0.00 0.00 2.15
2474 3034 4.093998 GCTTCATCCAACAGTGTGTGATAG 59.906 45.833 0.00 0.00 0.00 2.08
2475 3035 4.890158 TCATCCAACAGTGTGTGATAGT 57.110 40.909 0.00 0.00 0.00 2.12
2476 3036 5.993748 TCATCCAACAGTGTGTGATAGTA 57.006 39.130 0.00 0.00 0.00 1.82
2477 3037 6.353404 TCATCCAACAGTGTGTGATAGTAA 57.647 37.500 0.00 0.00 0.00 2.24
2478 3038 6.764379 TCATCCAACAGTGTGTGATAGTAAA 58.236 36.000 0.00 0.00 0.00 2.01
2479 3039 7.394016 TCATCCAACAGTGTGTGATAGTAAAT 58.606 34.615 0.00 0.00 0.00 1.40
2480 3040 7.334171 TCATCCAACAGTGTGTGATAGTAAATG 59.666 37.037 0.00 0.00 0.00 2.32
2481 3041 5.937540 TCCAACAGTGTGTGATAGTAAATGG 59.062 40.000 0.00 0.00 0.00 3.16
2482 3042 5.391950 CCAACAGTGTGTGATAGTAAATGGC 60.392 44.000 0.00 0.00 0.00 4.40
2483 3043 5.165961 ACAGTGTGTGATAGTAAATGGCT 57.834 39.130 0.00 0.00 0.00 4.75
2484 3044 4.937620 ACAGTGTGTGATAGTAAATGGCTG 59.062 41.667 0.00 0.00 0.00 4.85
2485 3045 4.937620 CAGTGTGTGATAGTAAATGGCTGT 59.062 41.667 0.00 0.00 0.00 4.40
2486 3046 5.063944 CAGTGTGTGATAGTAAATGGCTGTC 59.936 44.000 0.00 0.00 0.00 3.51
2487 3047 4.332819 GTGTGTGATAGTAAATGGCTGTCC 59.667 45.833 0.00 0.00 0.00 4.02
2488 3048 3.877508 GTGTGATAGTAAATGGCTGTCCC 59.122 47.826 0.00 0.00 0.00 4.46
2489 3049 3.780294 TGTGATAGTAAATGGCTGTCCCT 59.220 43.478 0.00 0.00 0.00 4.20
2490 3050 4.141711 TGTGATAGTAAATGGCTGTCCCTC 60.142 45.833 0.00 0.00 0.00 4.30
2491 3051 4.101741 GTGATAGTAAATGGCTGTCCCTCT 59.898 45.833 0.00 0.00 0.00 3.69
2492 3052 4.101585 TGATAGTAAATGGCTGTCCCTCTG 59.898 45.833 0.00 0.00 0.00 3.35
2493 3053 2.269940 AGTAAATGGCTGTCCCTCTGT 58.730 47.619 0.00 0.00 0.00 3.41
2494 3054 2.237392 AGTAAATGGCTGTCCCTCTGTC 59.763 50.000 0.00 0.00 0.00 3.51
2495 3055 0.329596 AAATGGCTGTCCCTCTGTCC 59.670 55.000 0.00 0.00 0.00 4.02
2496 3056 0.548682 AATGGCTGTCCCTCTGTCCT 60.549 55.000 0.00 0.00 0.00 3.85
2497 3057 1.270414 ATGGCTGTCCCTCTGTCCTG 61.270 60.000 0.00 0.00 0.00 3.86
2498 3058 1.915769 GGCTGTCCCTCTGTCCTGT 60.916 63.158 0.00 0.00 0.00 4.00
2499 3059 1.294780 GCTGTCCCTCTGTCCTGTG 59.705 63.158 0.00 0.00 0.00 3.66
2500 3060 1.978473 CTGTCCCTCTGTCCTGTGG 59.022 63.158 0.00 0.00 0.00 4.17
2501 3061 0.833834 CTGTCCCTCTGTCCTGTGGT 60.834 60.000 0.00 0.00 0.00 4.16
2502 3062 0.485543 TGTCCCTCTGTCCTGTGGTA 59.514 55.000 0.00 0.00 0.00 3.25
2503 3063 0.896226 GTCCCTCTGTCCTGTGGTAC 59.104 60.000 0.00 0.00 0.00 3.34
2504 3064 0.485543 TCCCTCTGTCCTGTGGTACA 59.514 55.000 0.00 0.00 0.00 2.90
2515 3075 4.329619 TGGTACACAACGACAGCG 57.670 55.556 0.00 0.00 44.79 5.18
2516 3076 1.952133 TGGTACACAACGACAGCGC 60.952 57.895 0.00 0.00 42.48 5.92
2517 3077 2.464189 GTACACAACGACAGCGCG 59.536 61.111 0.00 0.00 42.48 6.86
2519 3079 2.297195 TACACAACGACAGCGCGTG 61.297 57.895 8.43 7.60 44.86 5.34
2520 3080 4.993945 CACAACGACAGCGCGTGC 62.994 66.667 14.39 14.39 44.86 5.34
2531 3091 2.355837 CGCGTGCGGGCTACATAT 60.356 61.111 6.30 0.00 35.56 1.78
2532 3092 1.081041 CGCGTGCGGGCTACATATA 60.081 57.895 6.30 0.00 35.56 0.86
2533 3093 0.665068 CGCGTGCGGGCTACATATAA 60.665 55.000 6.30 0.00 35.56 0.98
2534 3094 1.722011 GCGTGCGGGCTACATATAAT 58.278 50.000 0.00 0.00 0.00 1.28
2535 3095 1.393539 GCGTGCGGGCTACATATAATG 59.606 52.381 0.00 0.00 0.00 1.90
2536 3096 2.683968 CGTGCGGGCTACATATAATGT 58.316 47.619 0.00 0.00 46.92 2.71
2537 3097 3.840468 CGTGCGGGCTACATATAATGTA 58.160 45.455 0.24 0.24 44.38 2.29
2538 3098 4.430007 CGTGCGGGCTACATATAATGTAT 58.570 43.478 0.50 0.00 44.11 2.29
2539 3099 5.584442 CGTGCGGGCTACATATAATGTATA 58.416 41.667 0.50 0.00 44.11 1.47
2540 3100 5.685954 CGTGCGGGCTACATATAATGTATAG 59.314 44.000 0.50 0.00 44.11 1.31
2541 3101 6.459161 CGTGCGGGCTACATATAATGTATAGA 60.459 42.308 0.50 0.00 44.11 1.98
2542 3102 6.696148 GTGCGGGCTACATATAATGTATAGAC 59.304 42.308 0.50 0.00 44.11 2.59
2543 3103 6.183360 TGCGGGCTACATATAATGTATAGACC 60.183 42.308 5.06 5.06 44.11 3.85
2544 3104 6.183360 GCGGGCTACATATAATGTATAGACCA 60.183 42.308 12.88 0.00 44.08 4.02
2545 3105 7.426410 CGGGCTACATATAATGTATAGACCAG 58.574 42.308 12.88 4.72 44.08 4.00
2546 3106 7.210873 GGGCTACATATAATGTATAGACCAGC 58.789 42.308 9.05 5.40 43.57 4.85
2547 3107 7.147724 GGGCTACATATAATGTATAGACCAGCA 60.148 40.741 9.05 0.00 43.57 4.41
2548 3108 8.424918 GGCTACATATAATGTATAGACCAGCAT 58.575 37.037 9.60 0.00 44.11 3.79
2549 3109 9.823647 GCTACATATAATGTATAGACCAGCATT 57.176 33.333 0.50 0.00 44.11 3.56
2552 3112 9.881649 ACATATAATGTATAGACCAGCATTGAG 57.118 33.333 0.00 0.00 42.78 3.02
2553 3113 9.881649 CATATAATGTATAGACCAGCATTGAGT 57.118 33.333 0.00 0.00 34.05 3.41
2563 3123 9.851686 ATAGACCAGCATTGAGTAAATAAATCA 57.148 29.630 0.00 0.00 0.00 2.57
2564 3124 8.579850 AGACCAGCATTGAGTAAATAAATCAA 57.420 30.769 0.00 0.00 37.36 2.57
2565 3125 9.193806 AGACCAGCATTGAGTAAATAAATCAAT 57.806 29.630 0.00 0.00 42.81 2.57
2566 3126 9.807649 GACCAGCATTGAGTAAATAAATCAATT 57.192 29.630 0.00 0.00 40.71 2.32
2628 3188 3.814268 GCCGCGTGCAATGACCAT 61.814 61.111 13.61 0.00 40.77 3.55
2648 3208 0.459237 CTTGCCTCGAGCTGACGAAT 60.459 55.000 6.99 0.00 44.23 3.34
2693 3253 2.187685 CTGGATAGCGTGCCAGCA 59.812 61.111 8.49 0.00 44.53 4.41
2743 3303 4.122143 TGAATGATGCACATGTCGTAGA 57.878 40.909 0.00 0.00 39.39 2.59
2799 3362 1.460497 TTGTTCCCAAAAGGCCCCC 60.460 57.895 0.00 0.00 34.51 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 4.482386 TCTTTGACTGTACGTGAGCATAC 58.518 43.478 0.00 0.00 0.00 2.39
9 10 4.457949 TCTCTTTGACTGTACGTGAGCATA 59.542 41.667 0.00 0.00 0.00 3.14
10 11 3.255888 TCTCTTTGACTGTACGTGAGCAT 59.744 43.478 0.00 0.00 0.00 3.79
11 12 2.621526 TCTCTTTGACTGTACGTGAGCA 59.378 45.455 0.00 0.00 0.00 4.26
12 13 3.284323 TCTCTTTGACTGTACGTGAGC 57.716 47.619 0.00 0.00 0.00 4.26
13 14 3.664486 CGTTCTCTTTGACTGTACGTGAG 59.336 47.826 0.00 0.00 0.00 3.51
14 15 3.549423 CCGTTCTCTTTGACTGTACGTGA 60.549 47.826 0.00 0.00 0.00 4.35
15 16 2.724690 CCGTTCTCTTTGACTGTACGTG 59.275 50.000 0.00 0.00 0.00 4.49
16 17 2.620115 TCCGTTCTCTTTGACTGTACGT 59.380 45.455 0.00 0.00 0.00 3.57
17 18 3.278367 TCCGTTCTCTTTGACTGTACG 57.722 47.619 0.00 0.00 0.00 3.67
18 19 4.989168 ACATTCCGTTCTCTTTGACTGTAC 59.011 41.667 0.00 0.00 0.00 2.90
19 20 4.988540 CACATTCCGTTCTCTTTGACTGTA 59.011 41.667 0.00 0.00 0.00 2.74
20 21 3.809832 CACATTCCGTTCTCTTTGACTGT 59.190 43.478 0.00 0.00 0.00 3.55
21 22 3.187227 CCACATTCCGTTCTCTTTGACTG 59.813 47.826 0.00 0.00 0.00 3.51
22 23 3.403038 CCACATTCCGTTCTCTTTGACT 58.597 45.455 0.00 0.00 0.00 3.41
23 24 2.095718 GCCACATTCCGTTCTCTTTGAC 60.096 50.000 0.00 0.00 0.00 3.18
24 25 2.151202 GCCACATTCCGTTCTCTTTGA 58.849 47.619 0.00 0.00 0.00 2.69
25 26 1.879380 TGCCACATTCCGTTCTCTTTG 59.121 47.619 0.00 0.00 0.00 2.77
26 27 1.880027 GTGCCACATTCCGTTCTCTTT 59.120 47.619 0.00 0.00 0.00 2.52
27 28 1.523758 GTGCCACATTCCGTTCTCTT 58.476 50.000 0.00 0.00 0.00 2.85
28 29 0.321653 GGTGCCACATTCCGTTCTCT 60.322 55.000 0.00 0.00 0.00 3.10
29 30 1.635663 CGGTGCCACATTCCGTTCTC 61.636 60.000 0.00 0.00 39.51 2.87
30 31 1.671054 CGGTGCCACATTCCGTTCT 60.671 57.895 0.00 0.00 39.51 3.01
31 32 1.024579 ATCGGTGCCACATTCCGTTC 61.025 55.000 0.00 0.00 43.94 3.95
32 33 0.250793 TATCGGTGCCACATTCCGTT 59.749 50.000 0.00 0.00 43.94 4.44
33 34 0.468226 ATATCGGTGCCACATTCCGT 59.532 50.000 0.00 0.00 43.94 4.69
34 35 0.867746 CATATCGGTGCCACATTCCG 59.132 55.000 0.00 0.00 44.76 4.30
35 36 2.146342 CTCATATCGGTGCCACATTCC 58.854 52.381 0.00 0.00 0.00 3.01
36 37 1.532868 GCTCATATCGGTGCCACATTC 59.467 52.381 0.00 0.00 0.00 2.67
37 38 1.134128 TGCTCATATCGGTGCCACATT 60.134 47.619 0.00 0.00 0.00 2.71
38 39 0.469494 TGCTCATATCGGTGCCACAT 59.531 50.000 0.00 0.00 0.00 3.21
39 40 0.469494 ATGCTCATATCGGTGCCACA 59.531 50.000 0.00 0.00 0.00 4.17
40 41 1.597742 AATGCTCATATCGGTGCCAC 58.402 50.000 0.00 0.00 0.00 5.01
41 42 1.948834 CAAATGCTCATATCGGTGCCA 59.051 47.619 0.00 0.00 0.00 4.92
42 43 2.031682 GTCAAATGCTCATATCGGTGCC 60.032 50.000 0.00 0.00 0.00 5.01
43 44 2.348872 CGTCAAATGCTCATATCGGTGC 60.349 50.000 0.00 0.00 0.00 5.01
44 45 2.221749 CCGTCAAATGCTCATATCGGTG 59.778 50.000 0.00 0.00 33.39 4.94
45 46 2.158957 ACCGTCAAATGCTCATATCGGT 60.159 45.455 0.00 0.00 43.87 4.69
46 47 2.221749 CACCGTCAAATGCTCATATCGG 59.778 50.000 0.00 0.00 41.95 4.18
47 48 2.221749 CCACCGTCAAATGCTCATATCG 59.778 50.000 0.00 0.00 0.00 2.92
48 49 3.248602 GTCCACCGTCAAATGCTCATATC 59.751 47.826 0.00 0.00 0.00 1.63
49 50 3.206150 GTCCACCGTCAAATGCTCATAT 58.794 45.455 0.00 0.00 0.00 1.78
50 51 2.627945 GTCCACCGTCAAATGCTCATA 58.372 47.619 0.00 0.00 0.00 2.15
51 52 1.453155 GTCCACCGTCAAATGCTCAT 58.547 50.000 0.00 0.00 0.00 2.90
52 53 0.948623 CGTCCACCGTCAAATGCTCA 60.949 55.000 0.00 0.00 0.00 4.26
59 60 3.980989 CCCGTCGTCCACCGTCAA 61.981 66.667 0.00 0.00 37.94 3.18
270 273 2.426024 GAGAATCGGTGCCACTGTACTA 59.574 50.000 3.12 0.00 0.00 1.82
271 274 1.204941 GAGAATCGGTGCCACTGTACT 59.795 52.381 3.12 2.04 0.00 2.73
272 275 1.641577 GAGAATCGGTGCCACTGTAC 58.358 55.000 3.12 0.00 0.00 2.90
273 276 0.535335 GGAGAATCGGTGCCACTGTA 59.465 55.000 3.12 0.00 34.37 2.74
427 433 1.562475 TGGTTTGGTATACAGGGGAGC 59.438 52.381 5.01 0.00 0.00 4.70
438 444 2.452295 TTACGCACGATGGTTTGGTA 57.548 45.000 0.00 0.00 0.00 3.25
457 631 1.144969 CGGTGCATCAACACGTAGTT 58.855 50.000 0.00 0.00 41.61 2.24
468 642 1.215655 GGATCGCAGTACGGTGCATC 61.216 60.000 7.74 8.50 43.70 3.91
475 649 1.920574 CTGTTGAAGGATCGCAGTACG 59.079 52.381 0.00 0.00 45.62 3.67
550 727 5.414360 TGATTAATCACTCTCTCTGTGTGC 58.586 41.667 14.23 0.00 39.30 4.57
556 733 5.923733 ACCGTTGATTAATCACTCTCTCT 57.076 39.130 17.76 0.00 36.36 3.10
557 734 6.969828 AAACCGTTGATTAATCACTCTCTC 57.030 37.500 17.76 4.32 36.36 3.20
605 782 2.421073 CGATGGAGTATAATACGGCCGA 59.579 50.000 35.90 16.57 32.85 5.54
726 906 3.634397 TTCTTCTCCGGATTCAGCAAT 57.366 42.857 3.57 0.00 0.00 3.56
742 922 7.397476 AGGGTGTTTTCTTTCTCTCTTTTTCTT 59.603 33.333 0.00 0.00 0.00 2.52
888 1070 4.001652 GGTTCTTTGTAGTAGTTCCAGGC 58.998 47.826 0.00 0.00 0.00 4.85
905 1087 1.986413 CACTGCTAGGCCTGGTTCT 59.014 57.895 17.99 0.00 0.00 3.01
906 1088 1.746991 GCACTGCTAGGCCTGGTTC 60.747 63.158 17.99 0.24 0.00 3.62
909 1091 1.077212 ATTGCACTGCTAGGCCTGG 60.077 57.895 17.99 15.23 0.00 4.45
910 1092 0.393402 TGATTGCACTGCTAGGCCTG 60.393 55.000 17.99 6.68 0.00 4.85
911 1093 0.107312 CTGATTGCACTGCTAGGCCT 60.107 55.000 11.78 11.78 0.00 5.19
912 1094 1.722636 GCTGATTGCACTGCTAGGCC 61.723 60.000 0.00 0.00 42.31 5.19
920 1118 1.985473 TGGTCAAAGCTGATTGCACT 58.015 45.000 0.00 0.00 45.94 4.40
922 1120 2.095110 CGATTGGTCAAAGCTGATTGCA 60.095 45.455 0.00 0.00 45.94 4.08
923 1121 2.095059 ACGATTGGTCAAAGCTGATTGC 60.095 45.455 0.00 0.00 43.29 3.56
930 1128 0.310543 TGCACACGATTGGTCAAAGC 59.689 50.000 0.00 0.00 0.00 3.51
979 1177 2.399448 CTAAGCTAAGCTAAGCCTCGC 58.601 52.381 0.00 0.00 43.86 5.03
980 1178 2.399448 GCTAAGCTAAGCTAAGCCTCG 58.601 52.381 0.00 0.00 43.86 4.63
989 1187 7.148222 GGGGCTATTTTTATAGCTAAGCTAAGC 60.148 40.741 14.68 7.87 44.62 3.09
990 1188 7.064728 CGGGGCTATTTTTATAGCTAAGCTAAG 59.935 40.741 14.68 0.00 44.62 2.18
991 1189 6.877322 CGGGGCTATTTTTATAGCTAAGCTAA 59.123 38.462 14.68 0.00 44.62 3.09
992 1190 6.013984 ACGGGGCTATTTTTATAGCTAAGCTA 60.014 38.462 14.68 0.00 46.47 3.32
993 1191 5.221864 ACGGGGCTATTTTTATAGCTAAGCT 60.222 40.000 14.68 0.00 46.47 3.74
1008 1480 2.057922 AGGATGAAATGACGGGGCTAT 58.942 47.619 0.00 0.00 0.00 2.97
1019 1491 6.211986 TGAAATGGAGAAAGCAAGGATGAAAT 59.788 34.615 0.00 0.00 0.00 2.17
1025 1497 2.821969 GCTGAAATGGAGAAAGCAAGGA 59.178 45.455 0.00 0.00 34.01 3.36
1039 1511 0.888619 TGACGACTCGAGGCTGAAAT 59.111 50.000 17.99 0.00 0.00 2.17
1042 1514 0.393132 ATCTGACGACTCGAGGCTGA 60.393 55.000 17.99 9.49 0.00 4.26
1044 1516 1.133407 GAAATCTGACGACTCGAGGCT 59.867 52.381 17.99 2.95 0.00 4.58
1045 1517 1.135373 TGAAATCTGACGACTCGAGGC 60.135 52.381 18.41 14.00 0.00 4.70
1046 1518 2.420372 TCTGAAATCTGACGACTCGAGG 59.580 50.000 18.41 1.82 0.00 4.63
1047 1519 3.126171 ACTCTGAAATCTGACGACTCGAG 59.874 47.826 11.84 11.84 0.00 4.04
1048 1520 3.075148 ACTCTGAAATCTGACGACTCGA 58.925 45.455 5.20 0.00 0.00 4.04
1049 1521 3.479505 ACTCTGAAATCTGACGACTCG 57.520 47.619 0.00 0.00 0.00 4.18
1052 1524 2.917971 CCGAACTCTGAAATCTGACGAC 59.082 50.000 0.00 0.00 0.00 4.34
1085 1557 2.469826 TCGCGCAGTTCATGGTAATAG 58.530 47.619 8.75 0.00 0.00 1.73
1086 1558 2.469826 CTCGCGCAGTTCATGGTAATA 58.530 47.619 8.75 0.00 0.00 0.98
1087 1559 1.290203 CTCGCGCAGTTCATGGTAAT 58.710 50.000 8.75 0.00 0.00 1.89
1277 1752 3.452474 CGCCATTGTTGGTTCTGAAAAA 58.548 40.909 0.00 0.00 45.57 1.94
1281 1756 1.523154 GCCGCCATTGTTGGTTCTGA 61.523 55.000 0.00 0.00 45.57 3.27
1320 1795 2.033757 CAGCTTGGCCTGAGCACT 59.966 61.111 26.42 10.08 42.56 4.40
1348 1823 3.302129 CCTTTGCAGGGGCCATTC 58.698 61.111 4.39 0.00 40.13 2.67
1358 1833 2.553028 CCTCTGCTTTAGACCCTTTGCA 60.553 50.000 0.00 0.00 0.00 4.08
1362 1837 1.630878 CACCCTCTGCTTTAGACCCTT 59.369 52.381 0.00 0.00 0.00 3.95
1374 1849 2.485124 GCTTCCTCATGATCACCCTCTG 60.485 54.545 0.00 0.00 0.00 3.35
1429 1904 2.218603 TGGCAGTCGAGGAAAACTTTC 58.781 47.619 0.00 0.00 36.46 2.62
1439 1914 2.322355 ATGGATTCTTGGCAGTCGAG 57.678 50.000 0.00 0.00 0.00 4.04
1444 1919 1.328680 CGTCGAATGGATTCTTGGCAG 59.671 52.381 0.00 0.00 34.69 4.85
1470 1945 2.186602 TAATCGGCGGTGAAGGGCAA 62.187 55.000 7.21 0.00 0.00 4.52
1532 2007 2.085320 AGTACGTACACTGAGCTGAGG 58.915 52.381 26.55 0.00 0.00 3.86
1634 2118 5.653769 AGAGAGAACAGAGAGGATGAGAAAG 59.346 44.000 0.00 0.00 0.00 2.62
1802 2332 8.665685 ACAGTTAATTAACAGCTTATGCAGTAC 58.334 33.333 26.06 0.00 37.97 2.73
1803 2333 8.664798 CACAGTTAATTAACAGCTTATGCAGTA 58.335 33.333 26.06 0.00 37.97 2.74
1804 2334 7.174946 ACACAGTTAATTAACAGCTTATGCAGT 59.825 33.333 26.06 14.74 40.71 4.40
1805 2335 7.530010 ACACAGTTAATTAACAGCTTATGCAG 58.470 34.615 26.06 14.25 38.62 4.41
1806 2336 7.447374 ACACAGTTAATTAACAGCTTATGCA 57.553 32.000 26.06 0.00 38.62 3.96
1842 2374 6.539464 CGTACCCTTACCAATTAGTAATGCAA 59.461 38.462 0.00 0.00 32.00 4.08
1897 2429 7.987649 AGCATTGCTTTCATTTCAAAGAAAAA 58.012 26.923 5.03 0.00 35.03 1.94
1898 2430 7.556733 AGCATTGCTTTCATTTCAAAGAAAA 57.443 28.000 5.03 0.00 35.03 2.29
1916 2448 2.032979 GGAACGGCAAACAAAAGCATTG 60.033 45.455 1.14 1.14 0.00 2.82
1931 2463 3.869272 GCATCGCAGCTGGAACGG 61.869 66.667 17.12 6.67 38.10 4.44
1944 2476 1.919918 GCATAAACGTGGCTTTGCATC 59.080 47.619 0.00 0.00 0.00 3.91
1952 2484 0.663153 GGAGATGGCATAAACGTGGC 59.337 55.000 0.00 0.00 44.24 5.01
1953 2485 2.036958 TGGAGATGGCATAAACGTGG 57.963 50.000 0.00 0.00 0.00 4.94
1954 2486 2.223021 CGTTGGAGATGGCATAAACGTG 60.223 50.000 20.17 0.67 36.54 4.49
1955 2487 2.006888 CGTTGGAGATGGCATAAACGT 58.993 47.619 20.17 0.00 36.54 3.99
1956 2488 1.330521 CCGTTGGAGATGGCATAAACG 59.669 52.381 20.92 20.92 39.90 3.60
1964 2496 1.875963 GTGTTGCCGTTGGAGATGG 59.124 57.895 0.00 0.00 37.49 3.51
1973 2505 3.304190 GGAGAAAATTTACGTGTTGCCGT 60.304 43.478 0.00 0.00 44.50 5.68
1974 2506 3.231160 GGAGAAAATTTACGTGTTGCCG 58.769 45.455 0.00 0.00 0.00 5.69
1980 2512 4.449743 TGAACGAGGGAGAAAATTTACGTG 59.550 41.667 0.00 0.00 33.26 4.49
1981 2513 4.634199 TGAACGAGGGAGAAAATTTACGT 58.366 39.130 0.00 0.00 0.00 3.57
1983 2515 5.932883 AGACTGAACGAGGGAGAAAATTTAC 59.067 40.000 0.00 0.00 0.00 2.01
1984 2516 6.110411 AGACTGAACGAGGGAGAAAATTTA 57.890 37.500 0.00 0.00 0.00 1.40
1994 2526 1.390565 ATCCGTAGACTGAACGAGGG 58.609 55.000 0.00 0.00 42.90 4.30
1997 2529 1.935873 CCGTATCCGTAGACTGAACGA 59.064 52.381 0.00 0.00 42.90 3.85
1999 2531 3.852572 GCATCCGTATCCGTAGACTGAAC 60.853 52.174 0.00 0.00 0.00 3.18
2008 2565 2.520020 TCCCGCATCCGTATCCGT 60.520 61.111 0.00 0.00 0.00 4.69
2013 2570 4.853142 AGGCCTCCCGCATCCGTA 62.853 66.667 0.00 0.00 40.31 4.02
2030 2587 2.154567 ATACAGTTACGGCTGGAGGA 57.845 50.000 0.00 0.00 40.59 3.71
2037 2595 6.253013 GGTTTGAAATGTATACAGTTACGGC 58.747 40.000 17.81 6.98 34.01 5.68
2074 2632 3.163594 GTTTGCATGAATTTCGACCGAG 58.836 45.455 0.00 0.00 0.00 4.63
2075 2633 2.095466 GGTTTGCATGAATTTCGACCGA 60.095 45.455 0.00 0.00 0.00 4.69
2079 2637 3.553922 GGGTTGGTTTGCATGAATTTCGA 60.554 43.478 0.00 0.00 0.00 3.71
2097 2655 9.699410 TTATCTGAACTTTGATGAATATGGGTT 57.301 29.630 0.00 0.00 0.00 4.11
2200 2758 4.734398 TGAAAAACTTGTTGGACATGCT 57.266 36.364 0.00 0.00 0.00 3.79
2202 2760 6.291743 CGTTCATGAAAAACTTGTTGGACATG 60.292 38.462 10.35 14.47 36.33 3.21
2252 2810 3.181451 ACTGTTGGATGAAGCTGAAGTGA 60.181 43.478 0.00 0.00 0.00 3.41
2253 2811 3.058432 CACTGTTGGATGAAGCTGAAGTG 60.058 47.826 0.00 0.00 0.00 3.16
2254 2812 3.144506 CACTGTTGGATGAAGCTGAAGT 58.855 45.455 0.00 0.00 0.00 3.01
2280 2839 2.368875 CAGAGGGACGGCCATTTACTAT 59.631 50.000 11.00 0.00 35.15 2.12
2281 2840 1.760613 CAGAGGGACGGCCATTTACTA 59.239 52.381 11.00 0.00 35.15 1.82
2282 2841 0.541863 CAGAGGGACGGCCATTTACT 59.458 55.000 11.00 0.00 35.15 2.24
2367 2926 7.869429 CCTCTTGCTCAACTTGTTAATTGATTT 59.131 33.333 0.00 0.00 34.43 2.17
2373 2933 6.064717 ACTTCCTCTTGCTCAACTTGTTAAT 58.935 36.000 0.00 0.00 0.00 1.40
2374 2934 5.437060 ACTTCCTCTTGCTCAACTTGTTAA 58.563 37.500 0.00 0.00 0.00 2.01
2375 2935 5.036117 ACTTCCTCTTGCTCAACTTGTTA 57.964 39.130 0.00 0.00 0.00 2.41
2376 2936 3.891049 ACTTCCTCTTGCTCAACTTGTT 58.109 40.909 0.00 0.00 0.00 2.83
2377 2937 3.567478 ACTTCCTCTTGCTCAACTTGT 57.433 42.857 0.00 0.00 0.00 3.16
2378 2938 6.038714 AGTTTTACTTCCTCTTGCTCAACTTG 59.961 38.462 0.00 0.00 0.00 3.16
2379 2939 6.122964 AGTTTTACTTCCTCTTGCTCAACTT 58.877 36.000 0.00 0.00 0.00 2.66
2380 2940 5.685728 AGTTTTACTTCCTCTTGCTCAACT 58.314 37.500 0.00 0.00 0.00 3.16
2381 2941 6.378710 AAGTTTTACTTCCTCTTGCTCAAC 57.621 37.500 0.00 0.00 31.77 3.18
2382 2942 6.202188 CGTAAGTTTTACTTCCTCTTGCTCAA 59.798 38.462 0.00 0.00 39.51 3.02
2383 2943 5.694910 CGTAAGTTTTACTTCCTCTTGCTCA 59.305 40.000 0.00 0.00 39.51 4.26
2384 2944 5.924825 TCGTAAGTTTTACTTCCTCTTGCTC 59.075 40.000 0.00 0.00 39.51 4.26
2385 2945 5.850614 TCGTAAGTTTTACTTCCTCTTGCT 58.149 37.500 0.00 0.00 39.51 3.91
2386 2946 6.723131 ATCGTAAGTTTTACTTCCTCTTGC 57.277 37.500 0.00 0.00 39.51 4.01
2387 2947 8.306680 TGAATCGTAAGTTTTACTTCCTCTTG 57.693 34.615 0.00 0.00 39.51 3.02
2388 2948 8.936864 CATGAATCGTAAGTTTTACTTCCTCTT 58.063 33.333 0.00 0.00 39.51 2.85
2389 2949 8.311836 TCATGAATCGTAAGTTTTACTTCCTCT 58.688 33.333 0.00 0.00 39.51 3.69
2390 2950 8.475331 TCATGAATCGTAAGTTTTACTTCCTC 57.525 34.615 0.00 0.00 39.51 3.71
2391 2951 8.718734 GTTCATGAATCGTAAGTTTTACTTCCT 58.281 33.333 12.12 0.00 39.51 3.36
2392 2952 7.686938 CGTTCATGAATCGTAAGTTTTACTTCC 59.313 37.037 12.12 0.00 39.51 3.46
2393 2953 7.686938 CCGTTCATGAATCGTAAGTTTTACTTC 59.313 37.037 12.12 0.00 39.51 3.01
2394 2954 7.385752 TCCGTTCATGAATCGTAAGTTTTACTT 59.614 33.333 12.12 0.00 41.97 2.24
2395 2955 6.869913 TCCGTTCATGAATCGTAAGTTTTACT 59.130 34.615 12.12 0.00 39.48 2.24
2396 2956 7.052565 TCCGTTCATGAATCGTAAGTTTTAC 57.947 36.000 12.12 0.00 39.48 2.01
2397 2957 7.546316 TGATCCGTTCATGAATCGTAAGTTTTA 59.454 33.333 12.12 0.00 39.48 1.52
2398 2958 6.370442 TGATCCGTTCATGAATCGTAAGTTTT 59.630 34.615 12.12 0.00 39.48 2.43
2399 2959 5.872617 TGATCCGTTCATGAATCGTAAGTTT 59.127 36.000 12.12 0.00 39.48 2.66
2400 2960 5.416083 TGATCCGTTCATGAATCGTAAGTT 58.584 37.500 12.12 1.23 39.48 2.66
2401 2961 5.006153 TGATCCGTTCATGAATCGTAAGT 57.994 39.130 12.12 3.42 39.48 2.24
2412 2972 4.943093 TGTGAAATGACATGATCCGTTCAT 59.057 37.500 0.00 0.00 46.27 2.57
2413 2973 4.154015 GTGTGAAATGACATGATCCGTTCA 59.846 41.667 0.00 3.68 39.12 3.18
2414 2974 4.154015 TGTGTGAAATGACATGATCCGTTC 59.846 41.667 0.00 1.26 0.00 3.95
2415 2975 4.071423 TGTGTGAAATGACATGATCCGTT 58.929 39.130 0.00 0.00 0.00 4.44
2416 2976 3.673902 TGTGTGAAATGACATGATCCGT 58.326 40.909 0.00 0.00 0.00 4.69
2417 2977 4.888038 ATGTGTGAAATGACATGATCCG 57.112 40.909 0.00 0.00 31.47 4.18
2418 2978 6.765036 AGAGTATGTGTGAAATGACATGATCC 59.235 38.462 0.00 0.00 34.60 3.36
2419 2979 7.493645 TGAGAGTATGTGTGAAATGACATGATC 59.506 37.037 0.00 0.00 34.60 2.92
2420 2980 7.279536 GTGAGAGTATGTGTGAAATGACATGAT 59.720 37.037 0.00 0.00 34.60 2.45
2421 2981 6.591448 GTGAGAGTATGTGTGAAATGACATGA 59.409 38.462 0.00 0.00 34.60 3.07
2422 2982 6.592994 AGTGAGAGTATGTGTGAAATGACATG 59.407 38.462 0.00 0.00 34.60 3.21
2423 2983 6.705302 AGTGAGAGTATGTGTGAAATGACAT 58.295 36.000 0.00 0.00 36.72 3.06
2424 2984 6.101650 AGTGAGAGTATGTGTGAAATGACA 57.898 37.500 0.00 0.00 0.00 3.58
2425 2985 6.646653 TGAAGTGAGAGTATGTGTGAAATGAC 59.353 38.462 0.00 0.00 0.00 3.06
2426 2986 6.758254 TGAAGTGAGAGTATGTGTGAAATGA 58.242 36.000 0.00 0.00 0.00 2.57
2427 2987 6.401903 GCTGAAGTGAGAGTATGTGTGAAATG 60.402 42.308 0.00 0.00 0.00 2.32
2428 2988 5.641209 GCTGAAGTGAGAGTATGTGTGAAAT 59.359 40.000 0.00 0.00 0.00 2.17
2429 2989 4.991056 GCTGAAGTGAGAGTATGTGTGAAA 59.009 41.667 0.00 0.00 0.00 2.69
2430 2990 4.281941 AGCTGAAGTGAGAGTATGTGTGAA 59.718 41.667 0.00 0.00 0.00 3.18
2431 2991 3.829026 AGCTGAAGTGAGAGTATGTGTGA 59.171 43.478 0.00 0.00 0.00 3.58
2432 2992 4.185467 AGCTGAAGTGAGAGTATGTGTG 57.815 45.455 0.00 0.00 0.00 3.82
2433 2993 4.281941 TGAAGCTGAAGTGAGAGTATGTGT 59.718 41.667 0.00 0.00 0.00 3.72
2434 2994 4.814147 TGAAGCTGAAGTGAGAGTATGTG 58.186 43.478 0.00 0.00 0.00 3.21
2435 2995 5.395103 GGATGAAGCTGAAGTGAGAGTATGT 60.395 44.000 0.00 0.00 0.00 2.29
2436 2996 5.049167 GGATGAAGCTGAAGTGAGAGTATG 58.951 45.833 0.00 0.00 0.00 2.39
2437 2997 4.713814 TGGATGAAGCTGAAGTGAGAGTAT 59.286 41.667 0.00 0.00 0.00 2.12
2438 2998 4.089361 TGGATGAAGCTGAAGTGAGAGTA 58.911 43.478 0.00 0.00 0.00 2.59
2439 2999 2.902486 TGGATGAAGCTGAAGTGAGAGT 59.098 45.455 0.00 0.00 0.00 3.24
2440 3000 3.606595 TGGATGAAGCTGAAGTGAGAG 57.393 47.619 0.00 0.00 0.00 3.20
2441 3001 3.071457 TGTTGGATGAAGCTGAAGTGAGA 59.929 43.478 0.00 0.00 0.00 3.27
2442 3002 3.405831 TGTTGGATGAAGCTGAAGTGAG 58.594 45.455 0.00 0.00 0.00 3.51
2443 3003 3.181451 ACTGTTGGATGAAGCTGAAGTGA 60.181 43.478 0.00 0.00 0.00 3.41
2444 3004 3.058432 CACTGTTGGATGAAGCTGAAGTG 60.058 47.826 0.00 0.00 0.00 3.16
2445 3005 3.144506 CACTGTTGGATGAAGCTGAAGT 58.855 45.455 0.00 0.00 0.00 3.01
2446 3006 3.058432 CACACTGTTGGATGAAGCTGAAG 60.058 47.826 0.00 0.00 0.00 3.02
2447 3007 2.880268 CACACTGTTGGATGAAGCTGAA 59.120 45.455 0.00 0.00 0.00 3.02
2448 3008 2.158769 ACACACTGTTGGATGAAGCTGA 60.159 45.455 0.00 0.00 0.00 4.26
2449 3009 2.031420 CACACACTGTTGGATGAAGCTG 60.031 50.000 0.00 0.00 0.00 4.24
2450 3010 2.158769 TCACACACTGTTGGATGAAGCT 60.159 45.455 0.00 0.00 0.00 3.74
2451 3011 2.221169 TCACACACTGTTGGATGAAGC 58.779 47.619 0.00 0.00 0.00 3.86
2452 3012 5.240891 ACTATCACACACTGTTGGATGAAG 58.759 41.667 3.56 0.00 0.00 3.02
2453 3013 5.227569 ACTATCACACACTGTTGGATGAA 57.772 39.130 3.56 0.00 0.00 2.57
2454 3014 4.890158 ACTATCACACACTGTTGGATGA 57.110 40.909 3.56 0.00 0.00 2.92
2455 3015 7.414429 CCATTTACTATCACACACTGTTGGATG 60.414 40.741 3.56 0.00 0.00 3.51
2456 3016 6.599244 CCATTTACTATCACACACTGTTGGAT 59.401 38.462 0.00 0.00 0.00 3.41
2457 3017 5.937540 CCATTTACTATCACACACTGTTGGA 59.062 40.000 0.00 0.00 0.00 3.53
2458 3018 5.391950 GCCATTTACTATCACACACTGTTGG 60.392 44.000 0.00 0.00 0.00 3.77
2459 3019 5.412594 AGCCATTTACTATCACACACTGTTG 59.587 40.000 0.00 0.00 0.00 3.33
2460 3020 5.412594 CAGCCATTTACTATCACACACTGTT 59.587 40.000 0.00 0.00 0.00 3.16
2461 3021 4.937620 CAGCCATTTACTATCACACACTGT 59.062 41.667 0.00 0.00 0.00 3.55
2462 3022 4.937620 ACAGCCATTTACTATCACACACTG 59.062 41.667 0.00 0.00 0.00 3.66
2463 3023 5.165961 ACAGCCATTTACTATCACACACT 57.834 39.130 0.00 0.00 0.00 3.55
2464 3024 4.332819 GGACAGCCATTTACTATCACACAC 59.667 45.833 0.00 0.00 0.00 3.82
2465 3025 4.513442 GGACAGCCATTTACTATCACACA 58.487 43.478 0.00 0.00 0.00 3.72
2466 3026 3.877508 GGGACAGCCATTTACTATCACAC 59.122 47.826 0.00 0.00 35.15 3.82
2467 3027 3.780294 AGGGACAGCCATTTACTATCACA 59.220 43.478 0.00 0.00 35.15 3.58
2468 3028 4.101741 AGAGGGACAGCCATTTACTATCAC 59.898 45.833 0.00 0.00 35.15 3.06
2469 3029 4.101585 CAGAGGGACAGCCATTTACTATCA 59.898 45.833 0.00 0.00 35.15 2.15
2470 3030 4.101741 ACAGAGGGACAGCCATTTACTATC 59.898 45.833 0.00 0.00 35.15 2.08
2471 3031 4.040755 ACAGAGGGACAGCCATTTACTAT 58.959 43.478 0.00 0.00 35.15 2.12
2472 3032 3.450904 ACAGAGGGACAGCCATTTACTA 58.549 45.455 0.00 0.00 35.15 1.82
2473 3033 2.237392 GACAGAGGGACAGCCATTTACT 59.763 50.000 0.00 0.00 35.15 2.24
2474 3034 2.633488 GACAGAGGGACAGCCATTTAC 58.367 52.381 0.00 0.00 35.15 2.01
2475 3035 1.559682 GGACAGAGGGACAGCCATTTA 59.440 52.381 0.00 0.00 35.15 1.40
2476 3036 0.329596 GGACAGAGGGACAGCCATTT 59.670 55.000 0.00 0.00 35.15 2.32
2477 3037 0.548682 AGGACAGAGGGACAGCCATT 60.549 55.000 0.00 0.00 35.15 3.16
2478 3038 1.081833 AGGACAGAGGGACAGCCAT 59.918 57.895 0.00 0.00 35.15 4.40
2479 3039 1.915266 CAGGACAGAGGGACAGCCA 60.915 63.158 0.00 0.00 35.15 4.75
2480 3040 1.915769 ACAGGACAGAGGGACAGCC 60.916 63.158 0.00 0.00 0.00 4.85
2481 3041 1.294780 CACAGGACAGAGGGACAGC 59.705 63.158 0.00 0.00 0.00 4.40
2482 3042 0.833834 ACCACAGGACAGAGGGACAG 60.834 60.000 0.00 0.00 0.00 3.51
2483 3043 0.485543 TACCACAGGACAGAGGGACA 59.514 55.000 0.00 0.00 0.00 4.02
2484 3044 0.896226 GTACCACAGGACAGAGGGAC 59.104 60.000 0.00 0.00 0.00 4.46
2485 3045 0.485543 TGTACCACAGGACAGAGGGA 59.514 55.000 0.00 0.00 0.00 4.20
2486 3046 0.608640 GTGTACCACAGGACAGAGGG 59.391 60.000 0.00 0.00 34.08 4.30
2487 3047 1.338107 TGTGTACCACAGGACAGAGG 58.662 55.000 0.00 0.00 39.62 3.69
2488 3048 2.755650 GTTGTGTACCACAGGACAGAG 58.244 52.381 0.00 0.00 45.39 3.35
2489 3049 1.067974 CGTTGTGTACCACAGGACAGA 59.932 52.381 0.00 0.00 45.39 3.41
2490 3050 1.067974 TCGTTGTGTACCACAGGACAG 59.932 52.381 0.00 0.00 45.39 3.51
2491 3051 1.112950 TCGTTGTGTACCACAGGACA 58.887 50.000 0.00 0.00 45.39 4.02
2492 3052 1.202440 TGTCGTTGTGTACCACAGGAC 60.202 52.381 16.90 16.90 45.39 3.85
2493 3053 1.067974 CTGTCGTTGTGTACCACAGGA 59.932 52.381 0.00 0.00 45.39 3.86
2494 3054 1.497991 CTGTCGTTGTGTACCACAGG 58.502 55.000 0.00 0.00 45.39 4.00
2495 3055 0.859232 GCTGTCGTTGTGTACCACAG 59.141 55.000 0.00 0.00 45.39 3.66
2496 3056 0.872451 CGCTGTCGTTGTGTACCACA 60.872 55.000 0.00 0.00 43.02 4.17
2497 3057 1.850640 CGCTGTCGTTGTGTACCAC 59.149 57.895 0.00 0.00 34.56 4.16
2498 3058 1.952133 GCGCTGTCGTTGTGTACCA 60.952 57.895 0.00 0.00 38.14 3.25
2499 3059 2.851104 GCGCTGTCGTTGTGTACC 59.149 61.111 0.00 0.00 38.14 3.34
2500 3060 2.297912 ACGCGCTGTCGTTGTGTAC 61.298 57.895 5.73 0.00 40.07 2.90
2501 3061 2.026445 ACGCGCTGTCGTTGTGTA 59.974 55.556 5.73 0.00 40.07 2.90
2502 3062 3.626244 CACGCGCTGTCGTTGTGT 61.626 61.111 5.73 0.00 41.21 3.72
2503 3063 4.993945 GCACGCGCTGTCGTTGTG 62.994 66.667 5.73 5.32 41.21 3.33
2514 3074 0.665068 TTATATGTAGCCCGCACGCG 60.665 55.000 3.53 3.53 39.44 6.01
2515 3075 1.393539 CATTATATGTAGCCCGCACGC 59.606 52.381 0.00 0.00 0.00 5.34
2516 3076 2.683968 ACATTATATGTAGCCCGCACG 58.316 47.619 0.00 0.00 42.78 5.34
2526 3086 9.881649 CTCAATGCTGGTCTATACATTATATGT 57.118 33.333 0.00 0.00 46.92 2.29
2527 3087 9.881649 ACTCAATGCTGGTCTATACATTATATG 57.118 33.333 0.00 0.00 31.75 1.78
2537 3097 9.851686 TGATTTATTTACTCAATGCTGGTCTAT 57.148 29.630 0.00 0.00 0.00 1.98
2538 3098 9.679661 TTGATTTATTTACTCAATGCTGGTCTA 57.320 29.630 0.00 0.00 0.00 2.59
2539 3099 8.579850 TTGATTTATTTACTCAATGCTGGTCT 57.420 30.769 0.00 0.00 0.00 3.85
2540 3100 9.807649 AATTGATTTATTTACTCAATGCTGGTC 57.192 29.630 0.00 0.00 39.06 4.02
2557 3117 9.897744 CTCTTGCTCAACTTGTTAATTGATTTA 57.102 29.630 0.00 0.00 34.43 1.40
2558 3118 7.869429 CCTCTTGCTCAACTTGTTAATTGATTT 59.131 33.333 0.00 0.00 34.43 2.17
2559 3119 7.231317 TCCTCTTGCTCAACTTGTTAATTGATT 59.769 33.333 0.00 0.00 34.43 2.57
2560 3120 6.716628 TCCTCTTGCTCAACTTGTTAATTGAT 59.283 34.615 0.00 0.00 34.43 2.57
2561 3121 6.061441 TCCTCTTGCTCAACTTGTTAATTGA 58.939 36.000 0.00 0.00 33.82 2.57
2562 3122 6.317789 TCCTCTTGCTCAACTTGTTAATTG 57.682 37.500 0.00 0.00 0.00 2.32
2563 3123 6.547510 ACTTCCTCTTGCTCAACTTGTTAATT 59.452 34.615 0.00 0.00 0.00 1.40
2564 3124 6.064717 ACTTCCTCTTGCTCAACTTGTTAAT 58.935 36.000 0.00 0.00 0.00 1.40
2565 3125 5.437060 ACTTCCTCTTGCTCAACTTGTTAA 58.563 37.500 0.00 0.00 0.00 2.01
2566 3126 5.036117 ACTTCCTCTTGCTCAACTTGTTA 57.964 39.130 0.00 0.00 0.00 2.41
2628 3188 1.524008 TTCGTCAGCTCGAGGCAAGA 61.524 55.000 15.58 6.29 44.79 3.02
2648 3208 0.375454 CACCAAGTTTTGCGACGTGA 59.625 50.000 0.00 0.00 31.83 4.35
2693 3253 1.267806 ACGTGAGGTCGTTGTCGTATT 59.732 47.619 0.00 0.00 41.37 1.89
2799 3362 0.179000 ATTTCGTAGGCAGGAGCAGG 59.821 55.000 0.00 0.00 44.61 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.