Multiple sequence alignment - TraesCS6B01G198100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G198100 chr6B 100.000 5660 0 0 1 5660 237099304 237104963 0.000000e+00 10453.0
1 TraesCS6B01G198100 chr6B 91.583 499 42 0 6 504 237064072 237064570 0.000000e+00 689.0
2 TraesCS6B01G198100 chr6B 76.030 267 52 7 2884 3148 93996976 93996720 1.660000e-25 128.0
3 TraesCS6B01G198100 chr6B 90.625 64 6 0 5433 5496 185004403 185004340 1.010000e-12 86.1
4 TraesCS6B01G198100 chr6D 94.151 1966 76 17 557 2486 137492021 137493983 0.000000e+00 2957.0
5 TraesCS6B01G198100 chr6D 94.166 1337 41 14 3944 5275 137495404 137496708 0.000000e+00 2002.0
6 TraesCS6B01G198100 chr6D 92.788 513 34 3 2915 3425 137494430 137494941 0.000000e+00 739.0
7 TraesCS6B01G198100 chr6D 97.722 395 6 2 5268 5660 137497599 137497992 0.000000e+00 676.0
8 TraesCS6B01G198100 chr6D 89.569 441 33 5 3533 3960 137494938 137495378 1.070000e-151 547.0
9 TraesCS6B01G198100 chr6D 86.207 174 21 2 2576 2748 137494260 137494431 9.680000e-43 185.0
10 TraesCS6B01G198100 chr6D 87.805 123 12 2 3422 3544 79857211 79857092 2.130000e-29 141.0
11 TraesCS6B01G198100 chr6A 93.783 1914 83 12 601 2486 180304887 180306792 0.000000e+00 2843.0
12 TraesCS6B01G198100 chr6A 94.923 1103 34 7 3960 5061 180308076 180309157 0.000000e+00 1707.0
13 TraesCS6B01G198100 chr6A 94.466 524 26 3 5138 5660 180309698 180310219 0.000000e+00 804.0
14 TraesCS6B01G198100 chr6A 92.257 452 28 4 2980 3425 180307190 180307640 8.000000e-178 634.0
15 TraesCS6B01G198100 chr6A 90.461 304 27 1 2495 2798 180306843 180307144 3.180000e-107 399.0
16 TraesCS6B01G198100 chr6A 82.791 430 37 19 3533 3960 180307637 180308031 3.250000e-92 350.0
17 TraesCS6B01G198100 chr6A 95.000 40 2 0 3085 3124 58105026 58104987 4.730000e-06 63.9
18 TraesCS6B01G198100 chr2B 92.385 499 38 0 1 499 360966652 360966154 0.000000e+00 712.0
19 TraesCS6B01G198100 chr2B 91.633 502 42 0 1 502 445027262 445026761 0.000000e+00 695.0
20 TraesCS6B01G198100 chr2B 91.400 500 41 2 6 505 442712207 442711710 0.000000e+00 684.0
21 TraesCS6B01G198100 chr2B 91.818 110 7 1 3422 3531 638968709 638968602 9.820000e-33 152.0
22 TraesCS6B01G198100 chr5B 92.323 495 38 0 10 504 243519010 243518516 0.000000e+00 704.0
23 TraesCS6B01G198100 chr5B 91.468 504 43 0 1 504 243666278 243665775 0.000000e+00 693.0
24 TraesCS6B01G198100 chr5B 95.238 63 2 1 505 567 529577425 529577364 1.300000e-16 99.0
25 TraesCS6B01G198100 chr3B 92.181 486 37 1 20 505 115557533 115557049 0.000000e+00 686.0
26 TraesCS6B01G198100 chr3B 90.855 503 45 1 1 502 283296774 283296272 0.000000e+00 673.0
27 TraesCS6B01G198100 chr3B 91.892 111 7 1 3422 3532 754856264 754856156 2.730000e-33 154.0
28 TraesCS6B01G198100 chr3B 95.238 63 2 1 505 567 749130900 749130961 1.300000e-16 99.0
29 TraesCS6B01G198100 chr4B 90.873 504 46 0 1 504 469193034 469192531 0.000000e+00 676.0
30 TraesCS6B01G198100 chr4B 95.161 62 2 1 506 567 396520178 396520238 4.670000e-16 97.1
31 TraesCS6B01G198100 chr4B 95.082 61 2 1 505 565 44680822 44680881 1.680000e-15 95.3
32 TraesCS6B01G198100 chr7D 81.104 471 49 16 2567 3003 85227540 85228004 1.950000e-89 340.0
33 TraesCS6B01G198100 chr7D 84.746 177 23 4 5422 5598 41391604 41391432 2.100000e-39 174.0
34 TraesCS6B01G198100 chr7D 91.892 111 7 1 3421 3531 426778562 426778670 2.730000e-33 154.0
35 TraesCS6B01G198100 chr1D 87.791 172 19 2 5422 5592 421077698 421077528 3.460000e-47 200.0
36 TraesCS6B01G198100 chr3D 92.562 121 9 0 3414 3534 461204837 461204717 2.100000e-39 174.0
37 TraesCS6B01G198100 chr7A 82.741 197 29 3 2808 3003 86244346 86244538 2.710000e-38 171.0
38 TraesCS6B01G198100 chr7A 76.587 252 43 11 2877 3124 533902281 533902520 2.140000e-24 124.0
39 TraesCS6B01G198100 chr7A 93.750 64 3 1 505 568 58205620 58205682 1.680000e-15 95.3
40 TraesCS6B01G198100 chr7A 100.000 30 0 0 3085 3114 86244563 86244592 7.920000e-04 56.5
41 TraesCS6B01G198100 chr5A 91.057 123 8 2 3411 3532 537119797 537119677 4.540000e-36 163.0
42 TraesCS6B01G198100 chrUn 78.776 245 42 6 2881 3124 18793181 18793416 7.590000e-34 156.0
43 TraesCS6B01G198100 chrUn 91.892 111 7 1 3422 3532 40878223 40878331 2.730000e-33 154.0
44 TraesCS6B01G198100 chrUn 91.892 111 7 1 3422 3532 310312485 310312377 2.730000e-33 154.0
45 TraesCS6B01G198100 chrUn 91.892 111 7 1 3422 3532 315277894 315278002 2.730000e-33 154.0
46 TraesCS6B01G198100 chr1A 91.892 111 7 1 3421 3531 427816355 427816463 2.730000e-33 154.0
47 TraesCS6B01G198100 chr3A 74.868 378 61 23 2675 3025 451673053 451672683 2.130000e-29 141.0
48 TraesCS6B01G198100 chr2A 86.441 118 11 4 3422 3538 757956945 757956832 2.140000e-24 124.0
49 TraesCS6B01G198100 chr2A 95.588 68 1 2 505 572 14434124 14434189 2.160000e-19 108.0
50 TraesCS6B01G198100 chr4D 77.093 227 39 8 2917 3141 396936609 396936394 9.960000e-23 119.0
51 TraesCS6B01G198100 chr2D 95.312 64 2 1 505 568 305763177 305763239 3.610000e-17 100.0
52 TraesCS6B01G198100 chr2D 96.721 61 1 1 505 565 593231947 593231888 3.610000e-17 100.0
53 TraesCS6B01G198100 chr2D 95.161 62 2 1 506 567 448650702 448650642 4.670000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G198100 chr6B 237099304 237104963 5659 False 10453.000000 10453 100.000000 1 5660 1 chr6B.!!$F2 5659
1 TraesCS6B01G198100 chr6D 137492021 137497992 5971 False 1184.333333 2957 92.433833 557 5660 6 chr6D.!!$F1 5103
2 TraesCS6B01G198100 chr6A 180304887 180310219 5332 False 1122.833333 2843 91.446833 601 5660 6 chr6A.!!$F1 5059
3 TraesCS6B01G198100 chr2B 445026761 445027262 501 True 695.000000 695 91.633000 1 502 1 chr2B.!!$R3 501
4 TraesCS6B01G198100 chr5B 243665775 243666278 503 True 693.000000 693 91.468000 1 504 1 chr5B.!!$R2 503
5 TraesCS6B01G198100 chr3B 283296272 283296774 502 True 673.000000 673 90.855000 1 502 1 chr3B.!!$R2 501
6 TraesCS6B01G198100 chr4B 469192531 469193034 503 True 676.000000 676 90.873000 1 504 1 chr4B.!!$R1 503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
490 492 0.179100 CAGTAGGACATCTGCCGTGG 60.179 60.0 0.00 0.00 0.00 4.94 F
1383 1412 0.034616 CCAAGATGGAGGCCGATCTC 59.965 60.0 13.45 3.43 40.96 2.75 F
1593 1622 0.179084 ACCTCAGGTGTGTCAACGTG 60.179 55.0 0.00 0.00 37.30 4.49 F
2901 3199 0.103937 GAAGCTCGATCCCTCACTGG 59.896 60.0 0.00 0.00 0.00 4.00 F
3032 3330 0.104672 TTTCTCCCTGGAGGACCACA 60.105 55.0 13.12 0.00 40.93 4.17 F
3384 3687 0.333993 AGGCATGGCTTGACTTGGAT 59.666 50.0 17.44 0.00 42.98 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1538 1567 0.255033 AGCAGCATCAAGATCAGCCA 59.745 50.000 0.00 0.00 0.00 4.75 R
2882 3180 0.103937 CCAGTGAGGGATCGAGCTTC 59.896 60.000 0.00 0.00 0.00 3.86 R
3113 3411 0.175989 AAACACTCCTAGGCGCTAGC 59.824 55.000 7.64 4.06 44.18 3.42 R
4430 4791 0.179078 CTGAGCTGAGCCATGAGGTC 60.179 60.000 0.00 0.00 43.62 3.85 R
4441 4802 1.003442 ATGGTAGCCCCTGAGCTGA 59.997 57.895 0.00 0.00 44.67 4.26 R
5230 6058 1.063806 CACTGAACTCTGCTGTACGC 58.936 55.000 3.22 3.22 39.77 4.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 3.499918 GGATATTGAAGATGGCGGTTCAG 59.500 47.826 0.00 0.00 34.25 3.02
185 186 3.623703 TGTATAGTTAGTCACCGAGCCA 58.376 45.455 0.00 0.00 0.00 4.75
229 230 2.601666 ACTCTGTGAGCCGCTGGA 60.602 61.111 0.00 0.00 32.04 3.86
285 287 2.731217 CGGTTCAAGGCAAGAAACAAG 58.269 47.619 7.57 0.00 32.26 3.16
352 354 6.245408 AGACATAAGCAATACCACCTCAAAA 58.755 36.000 0.00 0.00 0.00 2.44
381 383 1.880646 GCCTTTACCTTCACCGCAAGA 60.881 52.381 0.00 0.00 43.02 3.02
382 384 2.500229 CCTTTACCTTCACCGCAAGAA 58.500 47.619 0.00 0.00 43.02 2.52
399 401 4.335594 GCAAGAAGCCGAACCAGTATAAAT 59.664 41.667 0.00 0.00 37.23 1.40
409 411 5.872617 CGAACCAGTATAAATTCCTGTGTCA 59.127 40.000 0.00 0.00 0.00 3.58
429 431 3.330110 TCATTTGTCCCGTTTAACCCCTA 59.670 43.478 0.00 0.00 0.00 3.53
433 435 4.486125 TGTCCCGTTTAACCCCTATAAC 57.514 45.455 0.00 0.00 0.00 1.89
438 440 5.366477 TCCCGTTTAACCCCTATAACCTAAG 59.634 44.000 0.00 0.00 0.00 2.18
466 468 2.477825 CGATGGCTCCATGACTAAGTG 58.522 52.381 6.07 0.00 36.70 3.16
467 469 2.159043 CGATGGCTCCATGACTAAGTGT 60.159 50.000 6.07 0.00 36.70 3.55
473 475 3.681897 GCTCCATGACTAAGTGTTCACAG 59.318 47.826 5.74 0.00 0.00 3.66
490 492 0.179100 CAGTAGGACATCTGCCGTGG 60.179 60.000 0.00 0.00 0.00 4.94
511 513 6.747414 TGGCTATTCCACAACACTATAGAT 57.253 37.500 6.78 0.00 40.72 1.98
512 514 6.524734 TGGCTATTCCACAACACTATAGATG 58.475 40.000 6.78 5.20 40.72 2.90
513 515 6.326323 TGGCTATTCCACAACACTATAGATGA 59.674 38.462 6.78 0.00 40.72 2.92
514 516 6.647067 GGCTATTCCACAACACTATAGATGAC 59.353 42.308 6.78 0.00 34.01 3.06
515 517 7.210174 GCTATTCCACAACACTATAGATGACA 58.790 38.462 6.78 0.00 0.00 3.58
516 518 7.875041 GCTATTCCACAACACTATAGATGACAT 59.125 37.037 6.78 0.00 0.00 3.06
517 519 9.201127 CTATTCCACAACACTATAGATGACATG 57.799 37.037 6.78 0.00 0.00 3.21
518 520 5.917462 TCCACAACACTATAGATGACATGG 58.083 41.667 6.78 7.00 0.00 3.66
519 521 4.512944 CCACAACACTATAGATGACATGGC 59.487 45.833 6.78 0.00 0.00 4.40
520 522 5.118286 CACAACACTATAGATGACATGGCA 58.882 41.667 2.18 2.18 0.00 4.92
521 523 5.585844 CACAACACTATAGATGACATGGCAA 59.414 40.000 4.70 0.00 0.00 4.52
522 524 5.586243 ACAACACTATAGATGACATGGCAAC 59.414 40.000 4.70 1.74 0.00 4.17
523 525 5.620738 ACACTATAGATGACATGGCAACT 57.379 39.130 16.39 16.39 37.61 3.16
524 526 5.605534 ACACTATAGATGACATGGCAACTC 58.394 41.667 15.57 4.06 37.61 3.01
525 527 4.993584 CACTATAGATGACATGGCAACTCC 59.006 45.833 15.57 0.00 37.61 3.85
526 528 4.904251 ACTATAGATGACATGGCAACTCCT 59.096 41.667 15.57 6.82 35.26 3.69
527 529 4.785346 ATAGATGACATGGCAACTCCTT 57.215 40.909 15.57 0.00 35.26 3.36
528 530 5.894298 ATAGATGACATGGCAACTCCTTA 57.106 39.130 15.57 0.00 35.26 2.69
529 531 4.785346 AGATGACATGGCAACTCCTTAT 57.215 40.909 4.70 0.00 35.26 1.73
530 532 5.894298 AGATGACATGGCAACTCCTTATA 57.106 39.130 4.70 0.00 35.26 0.98
531 533 5.862845 AGATGACATGGCAACTCCTTATAG 58.137 41.667 4.70 0.00 35.26 1.31
532 534 3.808728 TGACATGGCAACTCCTTATAGC 58.191 45.455 0.00 0.00 35.26 2.97
533 535 3.142174 GACATGGCAACTCCTTATAGCC 58.858 50.000 0.00 0.00 45.41 3.93
534 536 2.158608 ACATGGCAACTCCTTATAGCCC 60.159 50.000 0.00 0.00 44.60 5.19
535 537 0.468226 TGGCAACTCCTTATAGCCCG 59.532 55.000 0.00 0.00 44.60 6.13
536 538 0.756903 GGCAACTCCTTATAGCCCGA 59.243 55.000 0.00 0.00 39.42 5.14
537 539 1.348036 GGCAACTCCTTATAGCCCGAT 59.652 52.381 0.00 0.00 39.42 4.18
538 540 2.224548 GGCAACTCCTTATAGCCCGATT 60.225 50.000 0.00 0.00 39.42 3.34
539 541 2.808543 GCAACTCCTTATAGCCCGATTG 59.191 50.000 0.00 0.00 0.00 2.67
540 542 3.744530 GCAACTCCTTATAGCCCGATTGT 60.745 47.826 0.00 0.00 0.00 2.71
541 543 4.451900 CAACTCCTTATAGCCCGATTGTT 58.548 43.478 0.00 0.00 0.00 2.83
542 544 4.073293 ACTCCTTATAGCCCGATTGTTG 57.927 45.455 0.00 0.00 0.00 3.33
543 545 3.181454 ACTCCTTATAGCCCGATTGTTGG 60.181 47.826 0.00 0.00 0.00 3.77
548 550 4.312052 GCCCGATTGTTGGCTGTA 57.688 55.556 0.00 0.00 44.46 2.74
549 551 2.793831 GCCCGATTGTTGGCTGTAT 58.206 52.632 0.00 0.00 44.46 2.29
550 552 1.102978 GCCCGATTGTTGGCTGTATT 58.897 50.000 0.00 0.00 44.46 1.89
551 553 2.294074 GCCCGATTGTTGGCTGTATTA 58.706 47.619 0.00 0.00 44.46 0.98
552 554 2.884639 GCCCGATTGTTGGCTGTATTAT 59.115 45.455 0.00 0.00 44.46 1.28
553 555 3.317993 GCCCGATTGTTGGCTGTATTATT 59.682 43.478 0.00 0.00 44.46 1.40
554 556 4.517453 GCCCGATTGTTGGCTGTATTATTA 59.483 41.667 0.00 0.00 44.46 0.98
555 557 5.009210 GCCCGATTGTTGGCTGTATTATTAA 59.991 40.000 0.00 0.00 44.46 1.40
556 558 6.435428 CCCGATTGTTGGCTGTATTATTAAC 58.565 40.000 0.00 0.00 0.00 2.01
557 559 6.435428 CCGATTGTTGGCTGTATTATTAACC 58.565 40.000 0.00 0.00 0.00 2.85
558 560 6.038825 CCGATTGTTGGCTGTATTATTAACCA 59.961 38.462 0.00 0.00 0.00 3.67
559 561 7.255451 CCGATTGTTGGCTGTATTATTAACCAT 60.255 37.037 0.00 0.00 0.00 3.55
560 562 7.591057 CGATTGTTGGCTGTATTATTAACCATG 59.409 37.037 0.00 0.00 0.00 3.66
561 563 6.142818 TGTTGGCTGTATTATTAACCATGC 57.857 37.500 0.00 0.00 0.00 4.06
562 564 5.890985 TGTTGGCTGTATTATTAACCATGCT 59.109 36.000 0.00 0.00 0.00 3.79
563 565 6.039270 TGTTGGCTGTATTATTAACCATGCTC 59.961 38.462 0.00 0.00 0.00 4.26
597 599 3.788766 GCGGACATGTGGCACGTC 61.789 66.667 9.92 12.91 0.00 4.34
777 797 3.999297 GACCGGCCTCCTCTCGACT 62.999 68.421 0.00 0.00 0.00 4.18
874 902 4.497300 CCGAATTCCATTGCTTCATTTGT 58.503 39.130 0.00 0.00 0.00 2.83
1383 1412 0.034616 CCAAGATGGAGGCCGATCTC 59.965 60.000 13.45 3.43 40.96 2.75
1593 1622 0.179084 ACCTCAGGTGTGTCAACGTG 60.179 55.000 0.00 0.00 37.30 4.49
1632 1661 7.290014 TCTCCAGCATGTCTTCTAACCAATATA 59.710 37.037 0.00 0.00 0.00 0.86
1671 1700 8.545420 CAACCATGCTCATGCTATTTAAATTTC 58.455 33.333 5.91 0.00 40.48 2.17
1677 1706 6.462067 GCTCATGCTATTTAAATTTCAGGGCT 60.462 38.462 5.91 0.00 36.03 5.19
1836 1865 8.516234 AGAAGTGGTACGTCATTATATCTCATC 58.484 37.037 0.00 0.00 0.00 2.92
1842 1871 9.088512 GGTACGTCATTATATCTCATCCATTTC 57.911 37.037 0.00 0.00 0.00 2.17
1901 1930 1.202076 GCAGCCGCAGTTATGTCTTTC 60.202 52.381 0.00 0.00 38.36 2.62
1937 1970 7.743520 TTTTTCTTTAACCTTTGTAGTTGCG 57.256 32.000 0.00 0.00 0.00 4.85
1940 1973 4.883006 TCTTTAACCTTTGTAGTTGCGGTT 59.117 37.500 0.00 0.00 40.72 4.44
1943 1976 4.759516 AACCTTTGTAGTTGCGGTTATG 57.240 40.909 0.00 0.00 36.28 1.90
1963 1996 7.325097 GGTTATGTTTTTGGTTAACATGAGTCG 59.675 37.037 8.10 0.00 43.85 4.18
2059 2092 1.371467 TATGATGGTGGCTATGGGGG 58.629 55.000 0.00 0.00 0.00 5.40
2177 2219 0.325296 TAAGCCCAGGTGATCCGAGT 60.325 55.000 0.00 0.00 39.05 4.18
2178 2220 1.903877 AAGCCCAGGTGATCCGAGTG 61.904 60.000 0.00 0.00 39.05 3.51
2211 2253 2.967929 ATCATGCCGAGCTCGAGCAC 62.968 60.000 37.17 29.92 43.94 4.40
2237 2279 4.320870 TCGGTTAGGGTTGAACTTGAATC 58.679 43.478 0.00 0.00 0.00 2.52
2244 2286 6.380079 AGGGTTGAACTTGAATCTAGTGAT 57.620 37.500 0.00 0.00 33.70 3.06
2248 2290 7.606456 GGGTTGAACTTGAATCTAGTGATACAA 59.394 37.037 0.00 1.71 31.70 2.41
2293 2335 7.506474 TCTTATTGCATAATATAACGTGTGCG 58.494 34.615 0.00 0.00 44.93 5.34
2331 2373 3.827008 TTTTGCTTGTTTGCCCACATA 57.173 38.095 0.00 0.00 0.00 2.29
2352 2394 7.387122 CACATATATCACATCTCCTTTGTCCTG 59.613 40.741 0.00 0.00 0.00 3.86
2361 2403 6.042781 ACATCTCCTTTGTCCTGTACTTACAA 59.957 38.462 0.00 0.00 35.50 2.41
2395 2437 9.010029 TCCACAAACTATTTCCAGTATTTTCTC 57.990 33.333 0.00 0.00 0.00 2.87
2479 2525 3.981212 ACCTGCTTAATTATTGTGCCCT 58.019 40.909 0.00 0.00 0.00 5.19
2512 2582 6.678568 ATCTTAGAGAGAGAGAGAGAGAGG 57.321 45.833 0.00 0.00 37.93 3.69
2552 2640 6.726258 TTATGTTTATGCATCTATCTGGCG 57.274 37.500 0.19 0.00 0.00 5.69
2571 2659 3.678548 GGCGTGAGTACTTAAGTCCAAAG 59.321 47.826 12.39 7.83 0.00 2.77
2579 2667 9.233649 TGAGTACTTAAGTCCAAAGTTCAAAAA 57.766 29.630 12.39 0.00 38.18 1.94
2590 2876 2.130426 TTCAAAAAGGCGCTGGGCA 61.130 52.632 18.70 0.00 46.16 5.36
2621 2907 1.539827 GTTTTGGGACATACTTGCGCT 59.460 47.619 9.73 0.00 39.30 5.92
2624 2910 0.323302 TGGGACATACTTGCGCTCAA 59.677 50.000 9.73 0.00 0.00 3.02
2627 2913 2.076863 GGACATACTTGCGCTCAACTT 58.923 47.619 9.73 0.00 0.00 2.66
2630 2916 0.804989 ATACTTGCGCTCAACTTGCC 59.195 50.000 9.73 0.00 0.00 4.52
2632 2918 1.081641 CTTGCGCTCAACTTGCCTG 60.082 57.895 9.73 0.00 0.00 4.85
2639 2925 2.050714 CAACTTGCCTGTGCGCTG 60.051 61.111 9.73 0.00 41.78 5.18
2655 2941 1.269621 CGCTGCCTAGGCGTTTAGTAT 60.270 52.381 28.28 0.00 46.37 2.12
2657 2943 2.544267 GCTGCCTAGGCGTTTAGTATTG 59.456 50.000 28.28 8.99 45.51 1.90
2667 2953 5.523916 AGGCGTTTAGTATTGTAGCATGAAG 59.476 40.000 0.00 0.00 0.00 3.02
2676 2962 6.765036 AGTATTGTAGCATGAAGGAATGACTG 59.235 38.462 0.00 0.00 0.00 3.51
2689 2975 7.719193 TGAAGGAATGACTGTATTGTGAAGAAA 59.281 33.333 0.00 0.00 0.00 2.52
2690 2976 8.641498 AAGGAATGACTGTATTGTGAAGAAAT 57.359 30.769 0.00 0.00 0.00 2.17
2705 2991 6.043127 TGTGAAGAAATATGCTAGATGGGCTA 59.957 38.462 0.00 0.00 0.00 3.93
2729 3015 4.714802 TCCTAGCTCATTAAACCACTAGCA 59.285 41.667 0.00 0.00 32.42 3.49
2753 3039 7.375053 CACATCTTCCTATTCTTCTACTAGCC 58.625 42.308 0.00 0.00 0.00 3.93
2760 3046 2.653234 TCTTCTACTAGCCCCCGTAG 57.347 55.000 0.00 0.00 35.55 3.51
2798 3084 3.300239 AAGTCTAGGTATGCTCCTCGT 57.700 47.619 0.00 0.00 38.86 4.18
2799 3085 2.577700 AGTCTAGGTATGCTCCTCGTG 58.422 52.381 0.00 0.00 38.86 4.35
2802 3088 1.452953 TAGGTATGCTCCTCGTGCCG 61.453 60.000 0.00 0.00 40.86 5.69
2837 3135 3.805267 CACCGATGCTGCCTCTTC 58.195 61.111 0.00 0.00 0.00 2.87
2838 3136 1.817099 CACCGATGCTGCCTCTTCC 60.817 63.158 0.00 0.00 0.00 3.46
2839 3137 1.992277 ACCGATGCTGCCTCTTCCT 60.992 57.895 0.00 0.00 0.00 3.36
2840 3138 1.227497 CCGATGCTGCCTCTTCCTC 60.227 63.158 0.00 0.00 0.00 3.71
2841 3139 1.684386 CCGATGCTGCCTCTTCCTCT 61.684 60.000 0.00 0.00 0.00 3.69
2842 3140 0.249405 CGATGCTGCCTCTTCCTCTC 60.249 60.000 0.00 0.00 0.00 3.20
2843 3141 1.122227 GATGCTGCCTCTTCCTCTCT 58.878 55.000 0.00 0.00 0.00 3.10
2844 3142 1.485895 GATGCTGCCTCTTCCTCTCTT 59.514 52.381 0.00 0.00 0.00 2.85
2845 3143 1.356124 TGCTGCCTCTTCCTCTCTTT 58.644 50.000 0.00 0.00 0.00 2.52
2846 3144 1.002888 TGCTGCCTCTTCCTCTCTTTG 59.997 52.381 0.00 0.00 0.00 2.77
2847 3145 1.003003 GCTGCCTCTTCCTCTCTTTGT 59.997 52.381 0.00 0.00 0.00 2.83
2848 3146 2.934801 GCTGCCTCTTCCTCTCTTTGTC 60.935 54.545 0.00 0.00 0.00 3.18
2849 3147 2.566724 CTGCCTCTTCCTCTCTTTGTCT 59.433 50.000 0.00 0.00 0.00 3.41
2850 3148 2.564947 TGCCTCTTCCTCTCTTTGTCTC 59.435 50.000 0.00 0.00 0.00 3.36
2851 3149 2.831526 GCCTCTTCCTCTCTTTGTCTCT 59.168 50.000 0.00 0.00 0.00 3.10
2852 3150 3.119137 GCCTCTTCCTCTCTTTGTCTCTC 60.119 52.174 0.00 0.00 0.00 3.20
2853 3151 3.447229 CCTCTTCCTCTCTTTGTCTCTCC 59.553 52.174 0.00 0.00 0.00 3.71
2854 3152 3.436243 TCTTCCTCTCTTTGTCTCTCCC 58.564 50.000 0.00 0.00 0.00 4.30
2855 3153 3.076785 TCTTCCTCTCTTTGTCTCTCCCT 59.923 47.826 0.00 0.00 0.00 4.20
2856 3154 3.551635 TCCTCTCTTTGTCTCTCCCTT 57.448 47.619 0.00 0.00 0.00 3.95
2857 3155 3.169099 TCCTCTCTTTGTCTCTCCCTTG 58.831 50.000 0.00 0.00 0.00 3.61
2858 3156 2.354604 CCTCTCTTTGTCTCTCCCTTGC 60.355 54.545 0.00 0.00 0.00 4.01
2859 3157 2.566724 CTCTCTTTGTCTCTCCCTTGCT 59.433 50.000 0.00 0.00 0.00 3.91
2860 3158 2.301296 TCTCTTTGTCTCTCCCTTGCTG 59.699 50.000 0.00 0.00 0.00 4.41
2861 3159 2.038295 CTCTTTGTCTCTCCCTTGCTGT 59.962 50.000 0.00 0.00 0.00 4.40
2862 3160 2.439507 TCTTTGTCTCTCCCTTGCTGTT 59.560 45.455 0.00 0.00 0.00 3.16
2863 3161 2.550830 TTGTCTCTCCCTTGCTGTTC 57.449 50.000 0.00 0.00 0.00 3.18
2864 3162 0.687354 TGTCTCTCCCTTGCTGTTCC 59.313 55.000 0.00 0.00 0.00 3.62
2865 3163 0.390472 GTCTCTCCCTTGCTGTTCCG 60.390 60.000 0.00 0.00 0.00 4.30
2866 3164 1.078848 CTCTCCCTTGCTGTTCCGG 60.079 63.158 0.00 0.00 0.00 5.14
2867 3165 1.831652 CTCTCCCTTGCTGTTCCGGT 61.832 60.000 0.00 0.00 0.00 5.28
2868 3166 1.672356 CTCCCTTGCTGTTCCGGTG 60.672 63.158 0.00 0.00 0.00 4.94
2869 3167 2.113139 CCCTTGCTGTTCCGGTGT 59.887 61.111 0.00 0.00 0.00 4.16
2870 3168 2.260869 CCCTTGCTGTTCCGGTGTG 61.261 63.158 0.00 0.00 0.00 3.82
2871 3169 1.227823 CCTTGCTGTTCCGGTGTGA 60.228 57.895 0.00 0.00 0.00 3.58
2872 3170 0.817634 CCTTGCTGTTCCGGTGTGAA 60.818 55.000 0.00 0.00 0.00 3.18
2873 3171 0.307760 CTTGCTGTTCCGGTGTGAAC 59.692 55.000 0.00 0.00 43.90 3.18
2874 3172 1.098712 TTGCTGTTCCGGTGTGAACC 61.099 55.000 0.00 0.00 43.17 3.62
2875 3173 1.525077 GCTGTTCCGGTGTGAACCA 60.525 57.895 0.00 0.00 43.17 3.67
2876 3174 1.507141 GCTGTTCCGGTGTGAACCAG 61.507 60.000 0.00 0.62 43.17 4.00
2877 3175 1.507141 CTGTTCCGGTGTGAACCAGC 61.507 60.000 0.00 0.00 43.17 4.85
2878 3176 2.112297 TTCCGGTGTGAACCAGCC 59.888 61.111 0.00 0.00 38.36 4.85
2879 3177 3.818121 TTCCGGTGTGAACCAGCCG 62.818 63.158 0.00 0.00 43.40 5.52
2881 3179 4.308458 CGGTGTGAACCAGCCGGA 62.308 66.667 5.05 0.00 40.45 5.14
2882 3180 2.358737 GGTGTGAACCAGCCGGAG 60.359 66.667 5.05 0.00 35.48 4.63
2883 3181 2.741092 GTGTGAACCAGCCGGAGA 59.259 61.111 5.05 0.00 35.59 3.71
2884 3182 1.070786 GTGTGAACCAGCCGGAGAA 59.929 57.895 5.05 0.00 35.59 2.87
2885 3183 0.951040 GTGTGAACCAGCCGGAGAAG 60.951 60.000 5.05 0.00 35.59 2.85
2886 3184 2.035442 GTGAACCAGCCGGAGAAGC 61.035 63.158 5.05 0.00 35.59 3.86
2887 3185 2.217038 TGAACCAGCCGGAGAAGCT 61.217 57.895 5.05 0.00 42.70 3.74
2888 3186 1.448717 GAACCAGCCGGAGAAGCTC 60.449 63.158 5.05 0.00 38.95 4.09
2889 3187 3.302347 AACCAGCCGGAGAAGCTCG 62.302 63.158 5.05 0.00 38.95 5.03
2890 3188 3.452786 CCAGCCGGAGAAGCTCGA 61.453 66.667 5.05 0.00 38.95 4.04
2891 3189 2.790791 CCAGCCGGAGAAGCTCGAT 61.791 63.158 5.05 0.00 38.95 3.59
2892 3190 1.299773 CAGCCGGAGAAGCTCGATC 60.300 63.158 5.05 0.00 38.95 3.69
2893 3191 2.028337 GCCGGAGAAGCTCGATCC 59.972 66.667 5.05 0.00 0.00 3.36
2894 3192 2.731374 CCGGAGAAGCTCGATCCC 59.269 66.667 0.00 0.00 0.00 3.85
2895 3193 1.830408 CCGGAGAAGCTCGATCCCT 60.830 63.158 0.00 0.00 0.00 4.20
2896 3194 1.657556 CGGAGAAGCTCGATCCCTC 59.342 63.158 6.30 0.00 0.00 4.30
2897 3195 1.103987 CGGAGAAGCTCGATCCCTCA 61.104 60.000 6.30 0.00 0.00 3.86
2898 3196 0.387565 GGAGAAGCTCGATCCCTCAC 59.612 60.000 8.06 0.00 0.00 3.51
2899 3197 1.398692 GAGAAGCTCGATCCCTCACT 58.601 55.000 0.00 0.00 0.00 3.41
2900 3198 1.066908 GAGAAGCTCGATCCCTCACTG 59.933 57.143 0.00 0.00 0.00 3.66
2901 3199 0.103937 GAAGCTCGATCCCTCACTGG 59.896 60.000 0.00 0.00 0.00 4.00
2902 3200 0.324738 AAGCTCGATCCCTCACTGGA 60.325 55.000 0.00 0.00 39.18 3.86
2903 3201 0.324738 AGCTCGATCCCTCACTGGAA 60.325 55.000 0.00 0.00 38.10 3.53
2904 3202 0.755686 GCTCGATCCCTCACTGGAAT 59.244 55.000 0.00 0.00 38.10 3.01
2905 3203 1.270041 GCTCGATCCCTCACTGGAATC 60.270 57.143 0.00 0.00 38.10 2.52
2906 3204 2.034878 CTCGATCCCTCACTGGAATCA 58.965 52.381 0.00 0.00 38.10 2.57
2907 3205 2.034878 TCGATCCCTCACTGGAATCAG 58.965 52.381 0.00 0.00 46.10 2.90
2998 3296 4.356436 TCACCAGAGAGATTGATTCCTCA 58.644 43.478 0.00 0.00 32.07 3.86
3001 3299 3.492309 CCAGAGAGATTGATTCCTCACCG 60.492 52.174 0.00 0.00 32.07 4.94
3032 3330 0.104672 TTTCTCCCTGGAGGACCACA 60.105 55.000 13.12 0.00 40.93 4.17
3036 3334 2.603473 CCTGGAGGACCACACCGA 60.603 66.667 0.00 0.00 41.77 4.69
3076 3374 3.460825 AGGGCCAAAGAGAGGTGTTATA 58.539 45.455 6.18 0.00 0.00 0.98
3089 3387 3.451526 GGTGTTATACCGAGTAGCCAAC 58.548 50.000 0.00 0.00 40.26 3.77
3113 3411 3.706140 CGCTTAAGCACGCCTAGG 58.294 61.111 26.29 3.67 42.21 3.02
3115 3413 1.153349 GCTTAAGCACGCCTAGGCT 60.153 57.895 30.55 14.71 43.46 4.58
3192 3495 9.840427 CAATACCCACTAAATTAAAGAACACAG 57.160 33.333 0.00 0.00 0.00 3.66
3195 3498 5.185056 CCCACTAAATTAAAGAACACAGGGG 59.815 44.000 0.00 0.00 0.00 4.79
3196 3499 5.336451 CCACTAAATTAAAGAACACAGGGGC 60.336 44.000 0.00 0.00 0.00 5.80
3197 3500 4.770531 ACTAAATTAAAGAACACAGGGGCC 59.229 41.667 0.00 0.00 0.00 5.80
3213 3516 1.742768 GCCTGTCCCACTAGATCCG 59.257 63.158 0.00 0.00 0.00 4.18
3383 3686 1.769665 AGGCATGGCTTGACTTGGA 59.230 52.632 17.44 0.00 42.98 3.53
3384 3687 0.333993 AGGCATGGCTTGACTTGGAT 59.666 50.000 17.44 0.00 42.98 3.41
3385 3688 0.458669 GGCATGGCTTGACTTGGATG 59.541 55.000 12.86 0.00 0.00 3.51
3387 3690 0.458669 CATGGCTTGACTTGGATGGC 59.541 55.000 0.00 0.00 0.00 4.40
3428 3732 8.922931 TTTACCGTTAATTTCTTTTACTCCCT 57.077 30.769 0.00 0.00 0.00 4.20
3429 3733 8.552083 TTACCGTTAATTTCTTTTACTCCCTC 57.448 34.615 0.00 0.00 0.00 4.30
3430 3734 6.776744 ACCGTTAATTTCTTTTACTCCCTCT 58.223 36.000 0.00 0.00 0.00 3.69
3431 3735 6.653740 ACCGTTAATTTCTTTTACTCCCTCTG 59.346 38.462 0.00 0.00 0.00 3.35
3433 3737 7.174426 CCGTTAATTTCTTTTACTCCCTCTGTT 59.826 37.037 0.00 0.00 0.00 3.16
3435 3739 9.063615 GTTAATTTCTTTTACTCCCTCTGTTCA 57.936 33.333 0.00 0.00 0.00 3.18
3437 3741 5.888982 TTCTTTTACTCCCTCTGTTCACT 57.111 39.130 0.00 0.00 0.00 3.41
3438 3742 5.888982 TCTTTTACTCCCTCTGTTCACTT 57.111 39.130 0.00 0.00 0.00 3.16
3439 3743 6.248569 TCTTTTACTCCCTCTGTTCACTTT 57.751 37.500 0.00 0.00 0.00 2.66
3440 3744 6.659824 TCTTTTACTCCCTCTGTTCACTTTT 58.340 36.000 0.00 0.00 0.00 2.27
3441 3745 6.542370 TCTTTTACTCCCTCTGTTCACTTTTG 59.458 38.462 0.00 0.00 0.00 2.44
3442 3746 3.933861 ACTCCCTCTGTTCACTTTTGT 57.066 42.857 0.00 0.00 0.00 2.83
3443 3747 6.488769 TTACTCCCTCTGTTCACTTTTGTA 57.511 37.500 0.00 0.00 0.00 2.41
3444 3748 5.367945 ACTCCCTCTGTTCACTTTTGTAA 57.632 39.130 0.00 0.00 0.00 2.41
3445 3749 5.368989 ACTCCCTCTGTTCACTTTTGTAAG 58.631 41.667 0.00 0.00 37.40 2.34
3446 3750 5.130477 ACTCCCTCTGTTCACTTTTGTAAGA 59.870 40.000 0.00 0.00 35.30 2.10
3447 3751 6.183361 ACTCCCTCTGTTCACTTTTGTAAGAT 60.183 38.462 0.00 0.00 35.30 2.40
3448 3752 5.997746 TCCCTCTGTTCACTTTTGTAAGATG 59.002 40.000 0.00 0.00 35.30 2.90
3449 3753 5.765182 CCCTCTGTTCACTTTTGTAAGATGT 59.235 40.000 0.00 0.00 35.30 3.06
3450 3754 6.263168 CCCTCTGTTCACTTTTGTAAGATGTT 59.737 38.462 0.00 0.00 35.30 2.71
3451 3755 7.201821 CCCTCTGTTCACTTTTGTAAGATGTTT 60.202 37.037 0.00 0.00 35.30 2.83
3452 3756 8.190784 CCTCTGTTCACTTTTGTAAGATGTTTT 58.809 33.333 0.00 0.00 35.30 2.43
3453 3757 8.909708 TCTGTTCACTTTTGTAAGATGTTTTG 57.090 30.769 0.00 0.00 35.30 2.44
3454 3758 7.973388 TCTGTTCACTTTTGTAAGATGTTTTGG 59.027 33.333 0.00 0.00 35.30 3.28
3455 3759 7.831753 TGTTCACTTTTGTAAGATGTTTTGGA 58.168 30.769 0.00 0.00 35.30 3.53
3456 3760 7.757624 TGTTCACTTTTGTAAGATGTTTTGGAC 59.242 33.333 0.00 0.00 35.30 4.02
3457 3761 7.397892 TCACTTTTGTAAGATGTTTTGGACA 57.602 32.000 0.00 0.00 37.46 4.02
3458 3762 7.479980 TCACTTTTGTAAGATGTTTTGGACAG 58.520 34.615 0.00 0.00 36.93 3.51
3459 3763 6.198966 CACTTTTGTAAGATGTTTTGGACAGC 59.801 38.462 0.00 0.00 44.92 4.40
3467 3771 5.834239 GATGTTTTGGACAGCTGAAATTG 57.166 39.130 23.35 0.00 42.62 2.32
3468 3772 4.998671 TGTTTTGGACAGCTGAAATTGA 57.001 36.364 23.35 0.00 33.40 2.57
3469 3773 5.336150 TGTTTTGGACAGCTGAAATTGAA 57.664 34.783 23.35 4.96 33.40 2.69
3470 3774 5.108517 TGTTTTGGACAGCTGAAATTGAAC 58.891 37.500 23.35 16.52 33.40 3.18
3471 3775 5.105392 TGTTTTGGACAGCTGAAATTGAACT 60.105 36.000 23.35 0.00 33.40 3.01
3472 3776 4.572985 TTGGACAGCTGAAATTGAACTG 57.427 40.909 23.35 0.00 0.00 3.16
3473 3777 3.554934 TGGACAGCTGAAATTGAACTGT 58.445 40.909 23.35 0.00 43.93 3.55
3474 3778 3.953612 TGGACAGCTGAAATTGAACTGTT 59.046 39.130 23.35 0.00 41.45 3.16
3475 3779 4.402155 TGGACAGCTGAAATTGAACTGTTT 59.598 37.500 23.35 0.00 41.45 2.83
3476 3780 5.105392 TGGACAGCTGAAATTGAACTGTTTT 60.105 36.000 23.35 0.00 41.45 2.43
3477 3781 6.096141 TGGACAGCTGAAATTGAACTGTTTTA 59.904 34.615 23.35 0.00 41.45 1.52
3478 3782 6.638468 GGACAGCTGAAATTGAACTGTTTTAG 59.362 38.462 23.35 0.00 41.45 1.85
3479 3783 6.507023 ACAGCTGAAATTGAACTGTTTTAGG 58.493 36.000 23.35 0.00 38.38 2.69
3480 3784 5.403466 CAGCTGAAATTGAACTGTTTTAGGC 59.597 40.000 8.42 0.00 0.00 3.93
3481 3785 5.068987 AGCTGAAATTGAACTGTTTTAGGCA 59.931 36.000 0.00 0.00 0.00 4.75
3482 3786 5.928264 GCTGAAATTGAACTGTTTTAGGCAT 59.072 36.000 0.00 0.00 0.00 4.40
3483 3787 6.424812 GCTGAAATTGAACTGTTTTAGGCATT 59.575 34.615 0.00 0.00 0.00 3.56
3484 3788 7.569957 GCTGAAATTGAACTGTTTTAGGCATTG 60.570 37.037 0.00 0.00 0.00 2.82
3485 3789 7.271511 TGAAATTGAACTGTTTTAGGCATTGT 58.728 30.769 0.00 0.00 0.00 2.71
3486 3790 7.437862 TGAAATTGAACTGTTTTAGGCATTGTC 59.562 33.333 0.00 0.00 0.00 3.18
3487 3791 6.655078 ATTGAACTGTTTTAGGCATTGTCT 57.345 33.333 0.00 0.00 0.00 3.41
3488 3792 6.463995 TTGAACTGTTTTAGGCATTGTCTT 57.536 33.333 0.00 0.00 0.00 3.01
3489 3793 7.575414 TTGAACTGTTTTAGGCATTGTCTTA 57.425 32.000 0.00 0.00 0.00 2.10
3490 3794 7.759489 TGAACTGTTTTAGGCATTGTCTTAT 57.241 32.000 0.00 0.00 0.00 1.73
3491 3795 8.856153 TGAACTGTTTTAGGCATTGTCTTATA 57.144 30.769 0.00 0.00 0.00 0.98
3492 3796 9.290988 TGAACTGTTTTAGGCATTGTCTTATAA 57.709 29.630 0.00 0.00 0.00 0.98
3504 3808 9.221775 GGCATTGTCTTATAAATGTCTAAAACG 57.778 33.333 0.00 0.00 35.87 3.60
3505 3809 9.769093 GCATTGTCTTATAAATGTCTAAAACGT 57.231 29.630 0.00 0.00 36.39 3.99
3517 3821 9.498307 AAATGTCTAAAACGTCTTACAAAAGTG 57.502 29.630 0.00 0.00 34.13 3.16
3518 3822 7.830940 TGTCTAAAACGTCTTACAAAAGTGA 57.169 32.000 0.00 0.00 34.13 3.41
3519 3823 8.254178 TGTCTAAAACGTCTTACAAAAGTGAA 57.746 30.769 0.00 0.00 34.13 3.18
3520 3824 8.170553 TGTCTAAAACGTCTTACAAAAGTGAAC 58.829 33.333 0.00 0.00 34.13 3.18
3521 3825 7.369026 GTCTAAAACGTCTTACAAAAGTGAACG 59.631 37.037 0.00 0.00 34.13 3.95
3522 3826 4.525411 AACGTCTTACAAAAGTGAACGG 57.475 40.909 0.00 0.00 34.13 4.44
3523 3827 3.784338 ACGTCTTACAAAAGTGAACGGA 58.216 40.909 0.00 0.00 34.13 4.69
3524 3828 3.800506 ACGTCTTACAAAAGTGAACGGAG 59.199 43.478 0.00 0.00 34.13 4.63
3525 3829 3.183775 CGTCTTACAAAAGTGAACGGAGG 59.816 47.826 0.00 0.00 34.13 4.30
3526 3830 4.374399 GTCTTACAAAAGTGAACGGAGGA 58.626 43.478 0.00 0.00 34.13 3.71
3527 3831 4.812626 GTCTTACAAAAGTGAACGGAGGAA 59.187 41.667 0.00 0.00 34.13 3.36
3528 3832 5.050295 GTCTTACAAAAGTGAACGGAGGAAG 60.050 44.000 0.00 0.00 34.13 3.46
3529 3833 3.277142 ACAAAAGTGAACGGAGGAAGT 57.723 42.857 0.00 0.00 0.00 3.01
3530 3834 4.411256 ACAAAAGTGAACGGAGGAAGTA 57.589 40.909 0.00 0.00 0.00 2.24
3531 3835 4.124970 ACAAAAGTGAACGGAGGAAGTAC 58.875 43.478 0.00 0.00 0.00 2.73
3532 3836 4.141779 ACAAAAGTGAACGGAGGAAGTACT 60.142 41.667 0.00 0.00 0.00 2.73
3533 3837 5.069516 ACAAAAGTGAACGGAGGAAGTACTA 59.930 40.000 0.00 0.00 0.00 1.82
3534 3838 4.780275 AAGTGAACGGAGGAAGTACTAC 57.220 45.455 0.00 0.00 0.00 2.73
3535 3839 3.759581 AGTGAACGGAGGAAGTACTACA 58.240 45.455 0.00 0.00 0.00 2.74
3536 3840 3.505293 AGTGAACGGAGGAAGTACTACAC 59.495 47.826 0.00 0.00 0.00 2.90
3537 3841 3.254166 GTGAACGGAGGAAGTACTACACA 59.746 47.826 0.00 0.00 0.00 3.72
3538 3842 3.504906 TGAACGGAGGAAGTACTACACAG 59.495 47.826 0.00 0.00 0.00 3.66
3539 3843 3.151912 ACGGAGGAAGTACTACACAGT 57.848 47.619 0.00 0.00 38.91 3.55
3540 3844 3.080319 ACGGAGGAAGTACTACACAGTC 58.920 50.000 0.00 0.00 36.14 3.51
3541 3845 3.244840 ACGGAGGAAGTACTACACAGTCT 60.245 47.826 0.00 0.00 36.14 3.24
3542 3846 3.757493 CGGAGGAAGTACTACACAGTCTT 59.243 47.826 0.00 0.00 36.14 3.01
3543 3847 4.940046 CGGAGGAAGTACTACACAGTCTTA 59.060 45.833 0.00 0.00 36.14 2.10
3544 3848 5.163774 CGGAGGAAGTACTACACAGTCTTAC 60.164 48.000 0.00 0.00 36.14 2.34
3545 3849 5.709164 GGAGGAAGTACTACACAGTCTTACA 59.291 44.000 0.00 0.00 36.14 2.41
3549 3853 9.305555 AGGAAGTACTACACAGTCTTACAATAA 57.694 33.333 0.00 0.00 36.14 1.40
3550 3854 9.570488 GGAAGTACTACACAGTCTTACAATAAG 57.430 37.037 0.00 0.00 36.14 1.73
3680 3984 3.582208 ACTCAGGATCTCTTGTTCTTGCT 59.418 43.478 0.00 0.00 0.00 3.91
3692 3996 4.305989 TGTTCTTGCTAAGCTGGTTTTG 57.694 40.909 0.00 0.00 0.00 2.44
3696 4000 4.681744 TCTTGCTAAGCTGGTTTTGTTTG 58.318 39.130 0.00 0.00 0.00 2.93
3750 4054 9.698309 ATACTGGATTCTATGAACTATTTCACG 57.302 33.333 0.00 0.00 44.66 4.35
3751 4055 6.480320 ACTGGATTCTATGAACTATTTCACGC 59.520 38.462 0.00 0.00 44.66 5.34
3753 4057 6.257849 TGGATTCTATGAACTATTTCACGCAC 59.742 38.462 0.00 0.00 44.66 5.34
3754 4058 6.292919 GGATTCTATGAACTATTTCACGCACC 60.293 42.308 0.00 0.00 44.66 5.01
3755 4059 4.439057 TCTATGAACTATTTCACGCACCC 58.561 43.478 0.00 0.00 44.66 4.61
3756 4060 2.552599 TGAACTATTTCACGCACCCA 57.447 45.000 0.00 0.00 36.79 4.51
3757 4061 2.852449 TGAACTATTTCACGCACCCAA 58.148 42.857 0.00 0.00 36.79 4.12
3763 4079 4.572571 TCACGCACCCAACCACCC 62.573 66.667 0.00 0.00 0.00 4.61
3781 4097 6.727394 ACCACCCACTATAACACATGTAATT 58.273 36.000 0.00 0.00 0.00 1.40
3782 4098 6.826741 ACCACCCACTATAACACATGTAATTC 59.173 38.462 0.00 0.00 0.00 2.17
3803 4119 2.172082 CTGAATCAGGGATCTGGCTCAA 59.828 50.000 1.53 0.00 41.23 3.02
3829 4145 2.302445 TGTTTTCCCATGGGCATTCAAG 59.698 45.455 27.41 0.00 34.68 3.02
3842 4158 2.097142 GCATTCAAGGCAGAGTGTCATC 59.903 50.000 0.00 0.00 0.00 2.92
3891 4207 0.747852 GGACTAGCTGTCTGGCTACC 59.252 60.000 13.59 0.00 44.74 3.18
3903 4219 2.632544 GGCTACCGTTGTTTGCCCC 61.633 63.158 0.00 0.00 37.10 5.80
3915 4231 1.899142 GTTTGCCCCTGATTGCCTTTA 59.101 47.619 0.00 0.00 0.00 1.85
3922 4238 3.696548 CCCCTGATTGCCTTTACTTTCTC 59.303 47.826 0.00 0.00 0.00 2.87
3950 4266 8.260114 CCTGGAGTTAATGGATTGCTTATTTTT 58.740 33.333 0.00 0.00 0.00 1.94
4000 4361 6.073440 TGTTTTCAGATGTTCTAACTAACCGC 60.073 38.462 0.00 0.00 0.00 5.68
4015 4376 4.698780 ACTAACCGCTGGAGTAATTTTTCC 59.301 41.667 1.50 1.90 0.00 3.13
4018 4379 3.443681 ACCGCTGGAGTAATTTTTCCATG 59.556 43.478 10.11 7.02 42.32 3.66
4206 4567 3.937706 GTGCTACTGGTTACGACTCTCTA 59.062 47.826 0.00 0.00 0.00 2.43
4224 4585 7.044798 ACTCTCTAAAAGTTGCTGGATATGAC 58.955 38.462 0.00 0.00 0.00 3.06
4427 4788 1.511887 CATACGGCGCAACAACAGC 60.512 57.895 10.83 0.00 0.00 4.40
4434 4795 3.649986 GCAACAACAGCGCGACCT 61.650 61.111 12.10 0.00 0.00 3.85
4435 4796 2.551270 CAACAACAGCGCGACCTC 59.449 61.111 12.10 0.00 0.00 3.85
4436 4797 2.108157 AACAACAGCGCGACCTCA 59.892 55.556 12.10 0.00 0.00 3.86
4437 4798 1.301716 AACAACAGCGCGACCTCAT 60.302 52.632 12.10 0.00 0.00 2.90
4438 4799 1.568612 AACAACAGCGCGACCTCATG 61.569 55.000 12.10 2.60 0.00 3.07
4439 4800 2.434884 AACAGCGCGACCTCATGG 60.435 61.111 12.10 0.00 39.83 3.66
4441 4802 4.827087 CAGCGCGACCTCATGGCT 62.827 66.667 12.10 0.00 36.63 4.75
4442 4803 4.521062 AGCGCGACCTCATGGCTC 62.521 66.667 12.10 0.00 36.63 4.70
4443 4804 4.819761 GCGCGACCTCATGGCTCA 62.820 66.667 12.10 0.00 36.63 4.26
4444 4805 2.584418 CGCGACCTCATGGCTCAG 60.584 66.667 0.00 0.00 36.63 3.35
4452 4813 2.192443 CATGGCTCAGCTCAGGGG 59.808 66.667 0.00 0.00 0.00 4.79
4539 4900 1.938577 CTAGCACAGGCATCATCACAC 59.061 52.381 0.00 0.00 44.61 3.82
4542 4903 1.131883 GCACAGGCATCATCACACTTC 59.868 52.381 0.00 0.00 40.72 3.01
4622 4983 1.207593 CGCAAGCAGCACCTAACAC 59.792 57.895 0.00 0.00 46.13 3.32
4624 4985 1.172180 GCAAGCAGCACCTAACACCA 61.172 55.000 0.00 0.00 44.79 4.17
4653 5014 0.615331 ATCAAGCTCCACATGGACGT 59.385 50.000 0.00 0.00 39.78 4.34
4672 5033 7.788026 TGGACGTAGATAAATTGGTGATAACT 58.212 34.615 0.00 0.00 0.00 2.24
4686 5047 5.529430 TGGTGATAACTGTACTTTGTTGTGG 59.471 40.000 0.00 0.00 0.00 4.17
4694 5055 6.174760 ACTGTACTTTGTTGTGGTCTTGTTA 58.825 36.000 0.00 0.00 0.00 2.41
4695 5056 6.826741 ACTGTACTTTGTTGTGGTCTTGTTAT 59.173 34.615 0.00 0.00 0.00 1.89
4719 5080 2.806856 GAGACATGGCGCTGCTTCG 61.807 63.158 7.64 0.00 0.00 3.79
4848 5209 9.176460 TGTGCAATCATATTTGTTTCTGAGATA 57.824 29.630 0.00 0.00 0.00 1.98
4917 5279 1.911057 TGAGTGGTGATGTCTCGAGT 58.089 50.000 13.13 0.00 0.00 4.18
4927 5289 2.743636 TGTCTCGAGTTTAGGCAAGG 57.256 50.000 13.13 0.00 0.00 3.61
4935 5297 3.927142 CGAGTTTAGGCAAGGAGTAACAG 59.073 47.826 0.00 0.00 0.00 3.16
5045 5407 1.303309 GTATGATCTGTGCACCTGCC 58.697 55.000 15.69 1.85 41.18 4.85
5064 5618 7.227512 CACCTGCCAGTCCTTATTCTAAAATAG 59.772 40.741 0.00 0.00 0.00 1.73
5104 5658 5.846203 CCATCTTGGTTGTTTGAGTTGATT 58.154 37.500 0.00 0.00 31.35 2.57
5131 5685 5.330295 GCTTTCTGTTGTCTAGCAATCATG 58.670 41.667 3.47 0.00 39.55 3.07
5185 6013 3.805267 GCTTCAGCACCATCCTCG 58.195 61.111 0.00 0.00 41.59 4.63
5223 6051 6.233434 ACTGAGATGAAAATGTGTAGAAGCA 58.767 36.000 0.00 0.00 0.00 3.91
5266 6094 6.152831 AGTTCAGTGTGGTTTTAGAAGCTTTT 59.847 34.615 0.00 0.00 34.41 2.27
5354 7079 5.957771 TCTAACCAGCTTCATCCAGTAAT 57.042 39.130 0.00 0.00 0.00 1.89
5356 7081 6.721318 TCTAACCAGCTTCATCCAGTAATTT 58.279 36.000 0.00 0.00 0.00 1.82
5382 7107 2.299867 GCCATCCTGGATGTTTGTTTGT 59.700 45.455 29.59 0.00 40.96 2.83
5428 7153 7.031372 GCTTTCTTTTAGCAATCATCATCACA 58.969 34.615 0.00 0.00 38.51 3.58
5518 7243 5.414360 TCTGAAACTCGGATCATCTTTGAG 58.586 41.667 0.00 1.92 34.73 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.850851 ATAACCCGGCCCCTTCTGGA 62.851 60.000 0.00 0.00 35.39 3.86
13 14 0.268566 TAGGTATAACCCGGCCCCTT 59.731 55.000 0.00 0.00 39.75 3.95
55 56 4.202503 ACCGCCATCTTCAATATCCTCATT 60.203 41.667 0.00 0.00 0.00 2.57
229 230 5.422970 TCCCTTTATATACACAGGTTGACGT 59.577 40.000 0.00 0.00 0.00 4.34
285 287 3.120041 GCTTGACCTAGCTTTCGATCTC 58.880 50.000 0.00 0.00 38.15 2.75
352 354 4.386424 GGTGAAGGTAAAGGCCTAATCCAT 60.386 45.833 5.16 0.99 38.03 3.41
381 383 4.881850 CAGGAATTTATACTGGTTCGGCTT 59.118 41.667 0.00 0.00 0.00 4.35
382 384 4.080526 ACAGGAATTTATACTGGTTCGGCT 60.081 41.667 0.00 0.00 36.57 5.52
399 401 1.142060 ACGGGACAAATGACACAGGAA 59.858 47.619 0.00 0.00 0.00 3.36
409 411 2.984435 AGGGGTTAAACGGGACAAAT 57.016 45.000 0.00 0.00 0.00 2.32
429 431 4.632153 CCATCGCAACTAGCTTAGGTTAT 58.368 43.478 0.00 0.00 42.61 1.89
433 435 1.202580 AGCCATCGCAACTAGCTTAGG 60.203 52.381 0.00 0.00 42.61 2.69
438 440 0.533755 ATGGAGCCATCGCAACTAGC 60.534 55.000 0.00 0.00 37.52 3.42
466 468 2.622436 GGCAGATGTCCTACTGTGAAC 58.378 52.381 0.00 0.00 36.62 3.18
467 469 1.204704 CGGCAGATGTCCTACTGTGAA 59.795 52.381 0.00 0.00 36.62 3.18
473 475 1.521681 GCCACGGCAGATGTCCTAC 60.522 63.158 2.36 0.00 41.49 3.18
490 492 7.210174 TGTCATCTATAGTGTTGTGGAATAGC 58.790 38.462 0.00 0.00 0.00 2.97
504 506 5.480642 AGGAGTTGCCATGTCATCTATAG 57.519 43.478 0.00 0.00 40.02 1.31
505 507 5.894298 AAGGAGTTGCCATGTCATCTATA 57.106 39.130 0.00 0.00 40.02 1.31
506 508 4.785346 AAGGAGTTGCCATGTCATCTAT 57.215 40.909 0.00 0.00 40.02 1.98
507 509 5.894298 ATAAGGAGTTGCCATGTCATCTA 57.106 39.130 0.00 0.00 40.02 1.98
508 510 4.785346 ATAAGGAGTTGCCATGTCATCT 57.215 40.909 0.00 0.00 40.02 2.90
509 511 4.453819 GCTATAAGGAGTTGCCATGTCATC 59.546 45.833 0.00 0.00 40.02 2.92
510 512 4.392940 GCTATAAGGAGTTGCCATGTCAT 58.607 43.478 0.00 0.00 40.02 3.06
511 513 3.433598 GGCTATAAGGAGTTGCCATGTCA 60.434 47.826 0.00 0.00 42.79 3.58
512 514 3.142174 GGCTATAAGGAGTTGCCATGTC 58.858 50.000 0.00 0.00 42.79 3.06
513 515 2.158608 GGGCTATAAGGAGTTGCCATGT 60.159 50.000 0.00 0.00 44.85 3.21
514 516 2.508526 GGGCTATAAGGAGTTGCCATG 58.491 52.381 0.00 0.00 44.85 3.66
515 517 1.072331 CGGGCTATAAGGAGTTGCCAT 59.928 52.381 0.00 0.00 44.85 4.40
516 518 0.468226 CGGGCTATAAGGAGTTGCCA 59.532 55.000 0.00 0.00 44.85 4.92
517 519 0.756903 TCGGGCTATAAGGAGTTGCC 59.243 55.000 0.00 0.00 42.56 4.52
518 520 2.808543 CAATCGGGCTATAAGGAGTTGC 59.191 50.000 0.00 0.00 0.00 4.17
519 521 4.073293 ACAATCGGGCTATAAGGAGTTG 57.927 45.455 0.00 0.00 0.00 3.16
520 522 4.451900 CAACAATCGGGCTATAAGGAGTT 58.548 43.478 0.00 0.00 0.00 3.01
521 523 3.181454 CCAACAATCGGGCTATAAGGAGT 60.181 47.826 0.00 0.00 0.00 3.85
522 524 3.403038 CCAACAATCGGGCTATAAGGAG 58.597 50.000 0.00 0.00 0.00 3.69
523 525 2.486548 GCCAACAATCGGGCTATAAGGA 60.487 50.000 0.00 0.00 46.74 3.36
524 526 1.880027 GCCAACAATCGGGCTATAAGG 59.120 52.381 0.00 0.00 46.74 2.69
532 534 6.435428 GTTAATAATACAGCCAACAATCGGG 58.565 40.000 0.00 0.00 0.00 5.14
533 535 6.038825 TGGTTAATAATACAGCCAACAATCGG 59.961 38.462 0.00 0.00 0.00 4.18
534 536 7.022055 TGGTTAATAATACAGCCAACAATCG 57.978 36.000 0.00 0.00 0.00 3.34
535 537 7.382218 GCATGGTTAATAATACAGCCAACAATC 59.618 37.037 0.00 0.00 0.00 2.67
536 538 7.069826 AGCATGGTTAATAATACAGCCAACAAT 59.930 33.333 0.00 0.00 0.00 2.71
537 539 6.379703 AGCATGGTTAATAATACAGCCAACAA 59.620 34.615 0.00 0.00 0.00 2.83
538 540 5.890985 AGCATGGTTAATAATACAGCCAACA 59.109 36.000 0.00 0.00 0.00 3.33
539 541 6.263168 AGAGCATGGTTAATAATACAGCCAAC 59.737 38.462 0.00 0.00 0.00 3.77
540 542 6.364701 AGAGCATGGTTAATAATACAGCCAA 58.635 36.000 0.00 0.00 0.00 4.52
541 543 5.940617 AGAGCATGGTTAATAATACAGCCA 58.059 37.500 0.00 0.00 0.00 4.75
542 544 7.979444 TTAGAGCATGGTTAATAATACAGCC 57.021 36.000 0.00 0.00 0.00 4.85
559 561 9.296400 GTCCGCATTTTATTTAATTTTAGAGCA 57.704 29.630 0.00 0.00 0.00 4.26
560 562 9.296400 TGTCCGCATTTTATTTAATTTTAGAGC 57.704 29.630 0.00 0.00 0.00 4.09
584 586 0.618458 AATAGGGACGTGCCACATGT 59.382 50.000 28.90 9.57 38.95 3.21
597 599 3.502595 TCTCTGCGTATCGAGAAATAGGG 59.497 47.826 0.00 0.00 33.62 3.53
874 902 1.666011 GGAGCGGATCGATTAGGCA 59.334 57.895 15.55 0.00 0.00 4.75
943 971 2.803670 GCGACTAGCACGAACGCA 60.804 61.111 12.89 0.00 46.75 5.24
1017 1046 1.009060 TGGTGGTAAGGAGGAGGCATA 59.991 52.381 0.00 0.00 0.00 3.14
1383 1412 3.366476 CCTTGACAGACTCGTAGGACTTG 60.366 52.174 0.00 0.00 0.00 3.16
1530 1559 1.279846 TCAAGATCAGCCATGAGTGCA 59.720 47.619 0.00 0.00 39.29 4.57
1538 1567 0.255033 AGCAGCATCAAGATCAGCCA 59.745 50.000 0.00 0.00 0.00 4.75
1632 1661 6.604171 TGAGCATGGTTGAGGTATTATTCAT 58.396 36.000 0.00 0.00 0.00 2.57
1640 1669 1.561076 AGCATGAGCATGGTTGAGGTA 59.439 47.619 9.19 0.00 46.20 3.08
1649 1678 7.384115 CCCTGAAATTTAAATAGCATGAGCATG 59.616 37.037 0.01 6.11 45.49 4.06
1650 1679 7.439381 CCCTGAAATTTAAATAGCATGAGCAT 58.561 34.615 0.01 0.00 45.49 3.79
1653 1682 6.921857 CAGCCCTGAAATTTAAATAGCATGAG 59.078 38.462 0.01 0.00 0.00 2.90
1671 1700 3.690475 TCATACTCATATGCAGCCCTG 57.310 47.619 0.00 0.00 38.50 4.45
1677 1706 7.337938 TCAGTTTCCTTTCATACTCATATGCA 58.662 34.615 0.00 0.00 38.50 3.96
1804 1833 3.088194 TGACGTACCACTTCTGTCAAC 57.912 47.619 0.00 0.00 36.69 3.18
1918 1947 4.823790 ACCGCAACTACAAAGGTTAAAG 57.176 40.909 0.00 0.00 0.00 1.85
1922 1951 4.139038 ACATAACCGCAACTACAAAGGTT 58.861 39.130 3.61 3.61 45.84 3.50
1930 1963 5.517322 AACCAAAAACATAACCGCAACTA 57.483 34.783 0.00 0.00 0.00 2.24
1937 1970 7.325097 CGACTCATGTTAACCAAAAACATAACC 59.675 37.037 2.48 0.00 43.84 2.85
1940 1973 7.499321 ACGACTCATGTTAACCAAAAACATA 57.501 32.000 2.48 0.00 43.84 2.29
1943 1976 7.514573 AAAACGACTCATGTTAACCAAAAAC 57.485 32.000 2.48 0.00 0.00 2.43
2177 2219 4.440112 CGGCATGATAAGTGTAGTCTCACA 60.440 45.833 0.00 0.00 40.37 3.58
2178 2220 4.045104 CGGCATGATAAGTGTAGTCTCAC 58.955 47.826 0.00 0.00 38.46 3.51
2211 2253 1.017701 GTTCAACCCTAACCGAGCCG 61.018 60.000 0.00 0.00 0.00 5.52
2303 2345 3.120511 GGCAAACAAGCAAAAACGTCAAA 60.121 39.130 0.00 0.00 35.83 2.69
2331 2373 5.965033 ACAGGACAAAGGAGATGTGATAT 57.035 39.130 0.00 0.00 0.00 1.63
2352 2394 3.322828 TGTGGAGTGTCCCTTGTAAGTAC 59.677 47.826 0.00 0.00 35.03 2.73
2361 2403 4.506802 GGAAATAGTTTGTGGAGTGTCCCT 60.507 45.833 0.00 0.00 35.03 4.20
2410 2452 6.437477 GGGTGAAAGAGAAAATGGTAAATCCT 59.563 38.462 0.00 0.00 37.07 3.24
2462 2508 5.835113 TTGAGAGGGCACAATAATTAAGC 57.165 39.130 0.00 0.00 0.00 3.09
2479 2525 9.559732 CTCTCTCTCTCTAAGATATGTTTGAGA 57.440 37.037 20.17 20.17 36.40 3.27
2543 2631 5.502153 ACTTAAGTACTCACGCCAGATAG 57.498 43.478 6.26 0.00 0.00 2.08
2552 2640 7.781548 TTGAACTTTGGACTTAAGTACTCAC 57.218 36.000 18.67 1.14 34.88 3.51
2571 2659 1.664649 GCCCAGCGCCTTTTTGAAC 60.665 57.895 2.29 0.00 0.00 3.18
2579 2667 1.888512 CATAATTAATGCCCAGCGCCT 59.111 47.619 2.29 0.00 36.24 5.52
2590 2876 8.232913 AGTATGTCCCAAAACGCATAATTAAT 57.767 30.769 0.00 0.00 0.00 1.40
2621 2907 2.203195 AGCGCACAGGCAAGTTGA 60.203 55.556 11.47 0.00 41.24 3.18
2627 2913 4.765449 CTAGGCAGCGCACAGGCA 62.765 66.667 11.47 2.01 41.24 4.75
2639 2925 3.739810 GCTACAATACTAAACGCCTAGGC 59.260 47.826 24.75 24.75 37.85 3.93
2655 2941 4.910195 ACAGTCATTCCTTCATGCTACAA 58.090 39.130 0.00 0.00 0.00 2.41
2657 2943 6.540189 ACAATACAGTCATTCCTTCATGCTAC 59.460 38.462 0.00 0.00 0.00 3.58
2667 2953 9.941664 CATATTTCTTCACAATACAGTCATTCC 57.058 33.333 0.00 0.00 0.00 3.01
2676 2962 8.725148 CCCATCTAGCATATTTCTTCACAATAC 58.275 37.037 0.00 0.00 0.00 1.89
2705 2991 5.366768 TGCTAGTGGTTTAATGAGCTAGGAT 59.633 40.000 0.00 0.00 0.00 3.24
2713 2999 5.880332 GGAAGATGTGCTAGTGGTTTAATGA 59.120 40.000 0.00 0.00 0.00 2.57
2725 3011 9.290988 CTAGTAGAAGAATAGGAAGATGTGCTA 57.709 37.037 0.00 0.00 34.24 3.49
2726 3012 7.255801 GCTAGTAGAAGAATAGGAAGATGTGCT 60.256 40.741 0.00 0.00 0.00 4.40
2729 3015 6.495526 GGGCTAGTAGAAGAATAGGAAGATGT 59.504 42.308 0.00 0.00 0.00 3.06
2753 3039 0.744414 CTGATTGTGCACCTACGGGG 60.744 60.000 15.69 0.00 41.89 5.73
2760 3046 2.880890 ACTTTCTGTCTGATTGTGCACC 59.119 45.455 15.69 0.00 0.00 5.01
2799 3085 4.803908 CAAAGGGAGAGGGGCGGC 62.804 72.222 0.00 0.00 0.00 6.53
2802 3088 2.044551 CAGCAAAGGGAGAGGGGC 60.045 66.667 0.00 0.00 0.00 5.80
2805 3091 1.676967 GGTGCAGCAAAGGGAGAGG 60.677 63.158 11.86 0.00 0.00 3.69
2833 3131 3.076785 AGGGAGAGACAAAGAGAGGAAGA 59.923 47.826 0.00 0.00 0.00 2.87
2834 3132 3.440127 AGGGAGAGACAAAGAGAGGAAG 58.560 50.000 0.00 0.00 0.00 3.46
2835 3133 3.551635 AGGGAGAGACAAAGAGAGGAA 57.448 47.619 0.00 0.00 0.00 3.36
2836 3134 3.169099 CAAGGGAGAGACAAAGAGAGGA 58.831 50.000 0.00 0.00 0.00 3.71
2837 3135 2.354604 GCAAGGGAGAGACAAAGAGAGG 60.355 54.545 0.00 0.00 0.00 3.69
2838 3136 2.566724 AGCAAGGGAGAGACAAAGAGAG 59.433 50.000 0.00 0.00 0.00 3.20
2839 3137 2.301296 CAGCAAGGGAGAGACAAAGAGA 59.699 50.000 0.00 0.00 0.00 3.10
2840 3138 2.038295 ACAGCAAGGGAGAGACAAAGAG 59.962 50.000 0.00 0.00 0.00 2.85
2841 3139 2.050144 ACAGCAAGGGAGAGACAAAGA 58.950 47.619 0.00 0.00 0.00 2.52
2842 3140 2.557920 ACAGCAAGGGAGAGACAAAG 57.442 50.000 0.00 0.00 0.00 2.77
2843 3141 2.487265 GGAACAGCAAGGGAGAGACAAA 60.487 50.000 0.00 0.00 0.00 2.83
2844 3142 1.072331 GGAACAGCAAGGGAGAGACAA 59.928 52.381 0.00 0.00 0.00 3.18
2845 3143 0.687354 GGAACAGCAAGGGAGAGACA 59.313 55.000 0.00 0.00 0.00 3.41
2846 3144 0.390472 CGGAACAGCAAGGGAGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
2847 3145 1.544825 CCGGAACAGCAAGGGAGAGA 61.545 60.000 0.00 0.00 0.00 3.10
2848 3146 1.078848 CCGGAACAGCAAGGGAGAG 60.079 63.158 0.00 0.00 0.00 3.20
2849 3147 1.841556 ACCGGAACAGCAAGGGAGA 60.842 57.895 9.46 0.00 0.00 3.71
2850 3148 1.672356 CACCGGAACAGCAAGGGAG 60.672 63.158 9.46 0.00 0.00 4.30
2851 3149 2.429930 CACCGGAACAGCAAGGGA 59.570 61.111 9.46 0.00 0.00 4.20
2852 3150 2.113139 ACACCGGAACAGCAAGGG 59.887 61.111 9.46 0.00 0.00 3.95
2853 3151 0.817634 TTCACACCGGAACAGCAAGG 60.818 55.000 9.46 0.00 0.00 3.61
2854 3152 0.307760 GTTCACACCGGAACAGCAAG 59.692 55.000 9.46 0.00 45.07 4.01
2855 3153 2.399856 GTTCACACCGGAACAGCAA 58.600 52.632 9.46 0.00 45.07 3.91
2856 3154 4.134623 GTTCACACCGGAACAGCA 57.865 55.556 9.46 0.00 45.07 4.41
2865 3163 2.358737 CTCCGGCTGGTTCACACC 60.359 66.667 12.43 0.00 44.56 4.16
2866 3164 0.951040 CTTCTCCGGCTGGTTCACAC 60.951 60.000 12.43 0.00 36.30 3.82
2867 3165 1.371183 CTTCTCCGGCTGGTTCACA 59.629 57.895 12.43 0.00 36.30 3.58
2868 3166 2.035442 GCTTCTCCGGCTGGTTCAC 61.035 63.158 12.43 0.00 36.30 3.18
2869 3167 2.172483 GAGCTTCTCCGGCTGGTTCA 62.172 60.000 12.43 0.00 40.40 3.18
2870 3168 1.448717 GAGCTTCTCCGGCTGGTTC 60.449 63.158 12.43 0.00 40.40 3.62
2871 3169 2.665603 GAGCTTCTCCGGCTGGTT 59.334 61.111 12.43 0.00 40.40 3.67
2872 3170 3.764466 CGAGCTTCTCCGGCTGGT 61.764 66.667 12.43 0.00 40.40 4.00
2873 3171 2.691674 GATCGAGCTTCTCCGGCTGG 62.692 65.000 4.71 4.71 40.40 4.85
2874 3172 1.299773 GATCGAGCTTCTCCGGCTG 60.300 63.158 0.00 0.00 40.40 4.85
2875 3173 2.494530 GGATCGAGCTTCTCCGGCT 61.495 63.158 0.00 0.00 43.26 5.52
2876 3174 2.028337 GGATCGAGCTTCTCCGGC 59.972 66.667 0.00 0.00 0.00 6.13
2877 3175 1.801309 GAGGGATCGAGCTTCTCCGG 61.801 65.000 0.00 0.00 0.00 5.14
2878 3176 1.103987 TGAGGGATCGAGCTTCTCCG 61.104 60.000 17.13 0.00 0.00 4.63
2879 3177 0.387565 GTGAGGGATCGAGCTTCTCC 59.612 60.000 17.13 7.59 0.00 3.71
2880 3178 1.066908 CAGTGAGGGATCGAGCTTCTC 59.933 57.143 14.42 14.42 0.00 2.87
2881 3179 1.110442 CAGTGAGGGATCGAGCTTCT 58.890 55.000 0.00 0.00 0.00 2.85
2882 3180 0.103937 CCAGTGAGGGATCGAGCTTC 59.896 60.000 0.00 0.00 0.00 3.86
2883 3181 0.324738 TCCAGTGAGGGATCGAGCTT 60.325 55.000 0.00 0.00 38.24 3.74
2884 3182 0.324738 TTCCAGTGAGGGATCGAGCT 60.325 55.000 0.00 0.00 36.67 4.09
2885 3183 0.755686 ATTCCAGTGAGGGATCGAGC 59.244 55.000 0.00 0.00 36.67 5.03
2886 3184 2.810439 GATTCCAGTGAGGGATCGAG 57.190 55.000 0.00 0.00 42.56 4.04
2898 3196 5.050769 CCGACGATAAATCAACTGATTCCAG 60.051 44.000 5.44 0.00 43.41 3.86
2899 3197 4.808895 CCGACGATAAATCAACTGATTCCA 59.191 41.667 5.44 0.00 43.41 3.53
2900 3198 5.047847 TCCGACGATAAATCAACTGATTCC 58.952 41.667 5.44 0.00 43.41 3.01
2901 3199 5.749109 ACTCCGACGATAAATCAACTGATTC 59.251 40.000 5.44 0.00 43.41 2.52
2902 3200 5.520288 CACTCCGACGATAAATCAACTGATT 59.480 40.000 0.00 0.00 45.91 2.57
2903 3201 5.043903 CACTCCGACGATAAATCAACTGAT 58.956 41.667 0.00 0.00 36.07 2.90
2904 3202 4.421058 CACTCCGACGATAAATCAACTGA 58.579 43.478 0.00 0.00 0.00 3.41
2905 3203 3.551890 CCACTCCGACGATAAATCAACTG 59.448 47.826 0.00 0.00 0.00 3.16
2906 3204 3.194968 ACCACTCCGACGATAAATCAACT 59.805 43.478 0.00 0.00 0.00 3.16
2907 3205 3.518590 ACCACTCCGACGATAAATCAAC 58.481 45.455 0.00 0.00 0.00 3.18
2908 3206 3.880047 ACCACTCCGACGATAAATCAA 57.120 42.857 0.00 0.00 0.00 2.57
2909 3207 3.193903 TCAACCACTCCGACGATAAATCA 59.806 43.478 0.00 0.00 0.00 2.57
2910 3208 3.777478 TCAACCACTCCGACGATAAATC 58.223 45.455 0.00 0.00 0.00 2.17
2911 3209 3.880047 TCAACCACTCCGACGATAAAT 57.120 42.857 0.00 0.00 0.00 1.40
2912 3210 3.663995 TTCAACCACTCCGACGATAAA 57.336 42.857 0.00 0.00 0.00 1.40
2913 3211 3.429822 GGATTCAACCACTCCGACGATAA 60.430 47.826 0.00 0.00 0.00 1.75
2914 3212 2.100252 GGATTCAACCACTCCGACGATA 59.900 50.000 0.00 0.00 0.00 2.92
2915 3213 1.134788 GGATTCAACCACTCCGACGAT 60.135 52.381 0.00 0.00 0.00 3.73
2916 3214 0.245539 GGATTCAACCACTCCGACGA 59.754 55.000 0.00 0.00 0.00 4.20
2917 3215 0.246635 AGGATTCAACCACTCCGACG 59.753 55.000 0.00 0.00 34.13 5.12
2918 3216 1.736032 CGAGGATTCAACCACTCCGAC 60.736 57.143 0.00 0.00 34.13 4.79
2919 3217 0.530744 CGAGGATTCAACCACTCCGA 59.469 55.000 0.00 0.00 34.13 4.55
2920 3218 0.246635 ACGAGGATTCAACCACTCCG 59.753 55.000 0.00 0.00 34.13 4.63
2978 3276 3.454082 GGTGAGGAATCAATCTCTCTGGT 59.546 47.826 0.00 0.00 0.00 4.00
3065 3363 3.220940 GGCTACTCGGTATAACACCTCT 58.779 50.000 0.00 0.00 46.19 3.69
3076 3374 4.078516 GGGCGTTGGCTACTCGGT 62.079 66.667 0.00 0.00 39.81 4.69
3113 3411 0.175989 AAACACTCCTAGGCGCTAGC 59.824 55.000 7.64 4.06 44.18 3.42
3161 3461 6.605594 TCTTTAATTTAGTGGGTATTGGCCTG 59.394 38.462 3.32 0.00 0.00 4.85
3195 3498 0.755698 TCGGATCTAGTGGGACAGGC 60.756 60.000 0.00 0.00 41.80 4.85
3196 3499 2.002505 ATCGGATCTAGTGGGACAGG 57.997 55.000 0.00 0.00 41.80 4.00
3197 3500 3.384789 TGAAATCGGATCTAGTGGGACAG 59.615 47.826 0.00 0.00 41.80 3.51
3381 3684 0.398381 TGCAATTTAGGGGGCCATCC 60.398 55.000 4.39 5.52 0.00 3.51
3383 3686 3.565617 ATATGCAATTTAGGGGGCCAT 57.434 42.857 4.39 0.00 0.00 4.40
3384 3687 3.342926 AATATGCAATTTAGGGGGCCA 57.657 42.857 4.39 0.00 0.00 5.36
3385 3688 4.020573 GGTAAATATGCAATTTAGGGGGCC 60.021 45.833 11.76 0.00 0.00 5.80
3387 3690 4.830600 ACGGTAAATATGCAATTTAGGGGG 59.169 41.667 11.76 6.74 0.00 5.40
3425 3729 5.765182 ACATCTTACAAAAGTGAACAGAGGG 59.235 40.000 0.00 0.00 34.13 4.30
3427 3731 9.013490 CAAAACATCTTACAAAAGTGAACAGAG 57.987 33.333 0.00 0.00 34.13 3.35
3428 3732 7.973388 CCAAAACATCTTACAAAAGTGAACAGA 59.027 33.333 0.00 0.00 34.13 3.41
3429 3733 7.973388 TCCAAAACATCTTACAAAAGTGAACAG 59.027 33.333 0.00 0.00 34.13 3.16
3430 3734 7.757624 GTCCAAAACATCTTACAAAAGTGAACA 59.242 33.333 0.00 0.00 34.13 3.18
3431 3735 7.757624 TGTCCAAAACATCTTACAAAAGTGAAC 59.242 33.333 0.00 0.00 31.49 3.18
3433 3737 7.397892 TGTCCAAAACATCTTACAAAAGTGA 57.602 32.000 0.00 0.00 31.49 3.41
3435 3739 6.096846 AGCTGTCCAAAACATCTTACAAAAGT 59.903 34.615 0.00 0.00 37.23 2.66
3437 3741 6.096141 TCAGCTGTCCAAAACATCTTACAAAA 59.904 34.615 14.67 0.00 37.23 2.44
3438 3742 5.592282 TCAGCTGTCCAAAACATCTTACAAA 59.408 36.000 14.67 0.00 37.23 2.83
3439 3743 5.129634 TCAGCTGTCCAAAACATCTTACAA 58.870 37.500 14.67 0.00 37.23 2.41
3440 3744 4.713553 TCAGCTGTCCAAAACATCTTACA 58.286 39.130 14.67 0.00 37.23 2.41
3441 3745 5.689383 TTCAGCTGTCCAAAACATCTTAC 57.311 39.130 14.67 0.00 37.23 2.34
3442 3746 6.899393 ATTTCAGCTGTCCAAAACATCTTA 57.101 33.333 14.67 0.00 37.23 2.10
3443 3747 5.796424 ATTTCAGCTGTCCAAAACATCTT 57.204 34.783 14.67 0.00 37.23 2.40
3444 3748 5.302568 TCAATTTCAGCTGTCCAAAACATCT 59.697 36.000 14.67 0.00 37.23 2.90
3445 3749 5.531634 TCAATTTCAGCTGTCCAAAACATC 58.468 37.500 14.67 0.00 37.23 3.06
3446 3750 5.534207 TCAATTTCAGCTGTCCAAAACAT 57.466 34.783 14.67 0.00 37.23 2.71
3447 3751 4.998671 TCAATTTCAGCTGTCCAAAACA 57.001 36.364 14.67 0.00 36.18 2.83
3448 3752 5.232838 CAGTTCAATTTCAGCTGTCCAAAAC 59.767 40.000 14.67 11.99 0.00 2.43
3449 3753 5.105392 ACAGTTCAATTTCAGCTGTCCAAAA 60.105 36.000 14.67 7.20 35.78 2.44
3450 3754 4.402155 ACAGTTCAATTTCAGCTGTCCAAA 59.598 37.500 14.67 7.59 35.78 3.28
3451 3755 3.953612 ACAGTTCAATTTCAGCTGTCCAA 59.046 39.130 14.67 5.92 35.78 3.53
3452 3756 3.554934 ACAGTTCAATTTCAGCTGTCCA 58.445 40.909 14.67 0.00 35.78 4.02
3453 3757 4.574599 AACAGTTCAATTTCAGCTGTCC 57.425 40.909 14.67 0.00 39.19 4.02
3454 3758 6.638468 CCTAAAACAGTTCAATTTCAGCTGTC 59.362 38.462 14.67 0.00 39.19 3.51
3455 3759 6.507023 CCTAAAACAGTTCAATTTCAGCTGT 58.493 36.000 14.67 0.00 41.51 4.40
3456 3760 5.403466 GCCTAAAACAGTTCAATTTCAGCTG 59.597 40.000 7.63 7.63 0.00 4.24
3457 3761 5.068987 TGCCTAAAACAGTTCAATTTCAGCT 59.931 36.000 0.00 0.00 0.00 4.24
3458 3762 5.288804 TGCCTAAAACAGTTCAATTTCAGC 58.711 37.500 0.00 0.00 0.00 4.26
3459 3763 7.439056 ACAATGCCTAAAACAGTTCAATTTCAG 59.561 33.333 0.00 0.00 0.00 3.02
3460 3764 7.271511 ACAATGCCTAAAACAGTTCAATTTCA 58.728 30.769 0.00 0.00 0.00 2.69
3461 3765 7.653311 AGACAATGCCTAAAACAGTTCAATTTC 59.347 33.333 0.00 0.00 0.00 2.17
3462 3766 7.500141 AGACAATGCCTAAAACAGTTCAATTT 58.500 30.769 0.00 0.00 0.00 1.82
3463 3767 7.054491 AGACAATGCCTAAAACAGTTCAATT 57.946 32.000 0.00 0.00 0.00 2.32
3464 3768 6.655078 AGACAATGCCTAAAACAGTTCAAT 57.345 33.333 0.00 0.00 0.00 2.57
3465 3769 6.463995 AAGACAATGCCTAAAACAGTTCAA 57.536 33.333 0.00 0.00 0.00 2.69
3466 3770 7.759489 ATAAGACAATGCCTAAAACAGTTCA 57.241 32.000 0.00 0.00 0.00 3.18
3478 3782 9.221775 CGTTTTAGACATTTATAAGACAATGCC 57.778 33.333 0.00 0.00 34.26 4.40
3479 3783 9.769093 ACGTTTTAGACATTTATAAGACAATGC 57.231 29.630 0.00 0.00 34.26 3.56
3491 3795 9.498307 CACTTTTGTAAGACGTTTTAGACATTT 57.502 29.630 0.00 0.00 35.30 2.32
3492 3796 8.885722 TCACTTTTGTAAGACGTTTTAGACATT 58.114 29.630 0.00 0.00 35.30 2.71
3493 3797 8.428186 TCACTTTTGTAAGACGTTTTAGACAT 57.572 30.769 0.00 0.00 35.30 3.06
3494 3798 7.830940 TCACTTTTGTAAGACGTTTTAGACA 57.169 32.000 0.00 0.00 35.30 3.41
3495 3799 7.369026 CGTTCACTTTTGTAAGACGTTTTAGAC 59.631 37.037 0.00 0.00 35.30 2.59
3496 3800 7.393327 CGTTCACTTTTGTAAGACGTTTTAGA 58.607 34.615 0.00 0.00 35.30 2.10
3497 3801 6.626095 CCGTTCACTTTTGTAAGACGTTTTAG 59.374 38.462 0.00 0.00 35.30 1.85
3498 3802 6.312426 TCCGTTCACTTTTGTAAGACGTTTTA 59.688 34.615 0.00 0.00 35.30 1.52
3499 3803 5.122082 TCCGTTCACTTTTGTAAGACGTTTT 59.878 36.000 0.00 0.00 35.30 2.43
3500 3804 4.630940 TCCGTTCACTTTTGTAAGACGTTT 59.369 37.500 0.00 0.00 35.30 3.60
3501 3805 4.183101 TCCGTTCACTTTTGTAAGACGTT 58.817 39.130 0.00 0.00 35.30 3.99
3502 3806 3.784338 TCCGTTCACTTTTGTAAGACGT 58.216 40.909 0.00 0.00 35.30 4.34
3503 3807 3.183775 CCTCCGTTCACTTTTGTAAGACG 59.816 47.826 0.00 0.00 35.30 4.18
3504 3808 4.374399 TCCTCCGTTCACTTTTGTAAGAC 58.626 43.478 0.00 0.00 35.30 3.01
3505 3809 4.675976 TCCTCCGTTCACTTTTGTAAGA 57.324 40.909 0.00 0.00 35.30 2.10
3506 3810 4.814771 ACTTCCTCCGTTCACTTTTGTAAG 59.185 41.667 0.00 0.00 37.40 2.34
3507 3811 4.773013 ACTTCCTCCGTTCACTTTTGTAA 58.227 39.130 0.00 0.00 0.00 2.41
3508 3812 4.411256 ACTTCCTCCGTTCACTTTTGTA 57.589 40.909 0.00 0.00 0.00 2.41
3509 3813 3.277142 ACTTCCTCCGTTCACTTTTGT 57.723 42.857 0.00 0.00 0.00 2.83
3510 3814 4.377897 AGTACTTCCTCCGTTCACTTTTG 58.622 43.478 0.00 0.00 0.00 2.44
3511 3815 4.684484 AGTACTTCCTCCGTTCACTTTT 57.316 40.909 0.00 0.00 0.00 2.27
3512 3816 4.586001 TGTAGTACTTCCTCCGTTCACTTT 59.414 41.667 0.00 0.00 0.00 2.66
3513 3817 4.022503 GTGTAGTACTTCCTCCGTTCACTT 60.023 45.833 0.00 0.00 0.00 3.16
3514 3818 3.505293 GTGTAGTACTTCCTCCGTTCACT 59.495 47.826 0.00 0.00 0.00 3.41
3515 3819 3.254166 TGTGTAGTACTTCCTCCGTTCAC 59.746 47.826 0.00 0.00 0.00 3.18
3516 3820 3.489355 TGTGTAGTACTTCCTCCGTTCA 58.511 45.455 0.00 0.00 0.00 3.18
3517 3821 3.505293 ACTGTGTAGTACTTCCTCCGTTC 59.495 47.826 0.00 0.00 34.74 3.95
3518 3822 3.494332 ACTGTGTAGTACTTCCTCCGTT 58.506 45.455 0.00 0.00 34.74 4.44
3519 3823 3.080319 GACTGTGTAGTACTTCCTCCGT 58.920 50.000 0.00 0.00 37.25 4.69
3520 3824 3.345414 AGACTGTGTAGTACTTCCTCCG 58.655 50.000 0.00 0.00 37.25 4.63
3521 3825 5.709164 TGTAAGACTGTGTAGTACTTCCTCC 59.291 44.000 0.00 0.00 37.25 4.30
3522 3826 6.814506 TGTAAGACTGTGTAGTACTTCCTC 57.185 41.667 0.00 0.00 37.25 3.71
3523 3827 7.778185 ATTGTAAGACTGTGTAGTACTTCCT 57.222 36.000 0.00 0.00 37.25 3.36
3524 3828 9.570488 CTTATTGTAAGACTGTGTAGTACTTCC 57.430 37.037 0.00 0.00 37.25 3.46
3530 3834 9.477484 CACTTTCTTATTGTAAGACTGTGTAGT 57.523 33.333 15.57 0.00 40.66 2.73
3531 3835 8.436200 GCACTTTCTTATTGTAAGACTGTGTAG 58.564 37.037 20.14 8.41 34.79 2.74
3532 3836 8.148351 AGCACTTTCTTATTGTAAGACTGTGTA 58.852 33.333 20.14 0.66 34.79 2.90
3533 3837 6.992715 AGCACTTTCTTATTGTAAGACTGTGT 59.007 34.615 20.14 11.81 34.79 3.72
3534 3838 7.426929 AGCACTTTCTTATTGTAAGACTGTG 57.573 36.000 17.58 17.58 35.11 3.66
3535 3839 8.451908 AAAGCACTTTCTTATTGTAAGACTGT 57.548 30.769 0.00 0.10 0.00 3.55
3656 3960 4.802248 GCAAGAACAAGAGATCCTGAGTGT 60.802 45.833 0.00 0.00 0.00 3.55
3680 3984 9.995003 ATTATCAAATCAAACAAAACCAGCTTA 57.005 25.926 0.00 0.00 0.00 3.09
3746 4050 4.572571 GGGTGGTTGGGTGCGTGA 62.573 66.667 0.00 0.00 0.00 4.35
3747 4051 4.885270 TGGGTGGTTGGGTGCGTG 62.885 66.667 0.00 0.00 0.00 5.34
3748 4052 4.887190 GTGGGTGGTTGGGTGCGT 62.887 66.667 0.00 0.00 0.00 5.24
3749 4053 2.478335 ATAGTGGGTGGTTGGGTGCG 62.478 60.000 0.00 0.00 0.00 5.34
3750 4054 0.621609 TATAGTGGGTGGTTGGGTGC 59.378 55.000 0.00 0.00 0.00 5.01
3751 4055 2.040545 TGTTATAGTGGGTGGTTGGGTG 59.959 50.000 0.00 0.00 0.00 4.61
3753 4057 2.040545 TGTGTTATAGTGGGTGGTTGGG 59.959 50.000 0.00 0.00 0.00 4.12
3754 4058 3.426787 TGTGTTATAGTGGGTGGTTGG 57.573 47.619 0.00 0.00 0.00 3.77
3755 4059 4.331968 ACATGTGTTATAGTGGGTGGTTG 58.668 43.478 0.00 0.00 0.00 3.77
3756 4060 4.650972 ACATGTGTTATAGTGGGTGGTT 57.349 40.909 0.00 0.00 0.00 3.67
3757 4061 5.765576 TTACATGTGTTATAGTGGGTGGT 57.234 39.130 9.11 0.00 0.00 4.16
3781 4097 2.045524 GAGCCAGATCCCTGATTCAGA 58.954 52.381 15.36 0.00 43.02 3.27
3782 4098 1.767088 TGAGCCAGATCCCTGATTCAG 59.233 52.381 6.70 6.70 43.02 3.02
3803 4119 3.474083 CCCATGGGAAAACAAGGGT 57.526 52.632 28.27 0.00 42.88 4.34
3821 4137 1.527034 TGACACTCTGCCTTGAATGC 58.473 50.000 0.00 0.00 0.00 3.56
3829 4145 3.932710 TGTATTTTCGATGACACTCTGCC 59.067 43.478 0.00 0.00 0.00 4.85
3891 4207 0.667184 GCAATCAGGGGCAAACAACG 60.667 55.000 0.00 0.00 0.00 4.10
3903 4219 3.181506 GGCGAGAAAGTAAAGGCAATCAG 60.182 47.826 0.00 0.00 0.00 2.90
3915 4231 3.600388 CATTAACTCCAGGCGAGAAAGT 58.400 45.455 0.00 0.00 41.63 2.66
3922 4238 1.334869 GCAATCCATTAACTCCAGGCG 59.665 52.381 0.00 0.00 0.00 5.52
4000 4361 9.191995 GTTGTTAACATGGAAAAATTACTCCAG 57.808 33.333 9.56 8.28 44.82 3.86
4206 4567 6.006449 AGAAGTGTCATATCCAGCAACTTTT 58.994 36.000 0.00 0.00 0.00 2.27
4224 4585 2.983229 AGTGCAGGCATTCTAGAAGTG 58.017 47.619 11.53 10.20 0.00 3.16
4250 4611 4.704833 TTGGAGCCGCTGCCTGAC 62.705 66.667 9.66 0.00 38.69 3.51
4344 4705 1.477377 GCAGATCCATATGTGGGTGCA 60.477 52.381 19.44 0.00 46.06 4.57
4345 4706 1.242076 GCAGATCCATATGTGGGTGC 58.758 55.000 8.84 11.37 46.06 5.01
4346 4707 2.224606 GTGCAGATCCATATGTGGGTG 58.775 52.381 8.84 5.48 46.06 4.61
4401 4762 1.004927 GTTGCGCCGTATGATGAAGAC 60.005 52.381 4.18 0.00 0.00 3.01
4427 4788 2.584418 CTGAGCCATGAGGTCGCG 60.584 66.667 0.00 0.00 46.44 5.87
4428 4789 2.894387 GCTGAGCCATGAGGTCGC 60.894 66.667 0.00 4.68 46.44 5.19
4429 4790 1.227205 GAGCTGAGCCATGAGGTCG 60.227 63.158 0.00 0.00 46.44 4.79
4430 4791 0.179078 CTGAGCTGAGCCATGAGGTC 60.179 60.000 0.00 0.00 43.62 3.85
4431 4792 1.624479 CCTGAGCTGAGCCATGAGGT 61.624 60.000 0.00 0.00 37.19 3.85
4432 4793 1.146485 CCTGAGCTGAGCCATGAGG 59.854 63.158 0.00 0.00 38.23 3.86
4433 4794 1.146485 CCCTGAGCTGAGCCATGAG 59.854 63.158 0.00 0.00 0.00 2.90
4434 4795 2.372890 CCCCTGAGCTGAGCCATGA 61.373 63.158 0.00 0.00 0.00 3.07
4435 4796 2.192443 CCCCTGAGCTGAGCCATG 59.808 66.667 0.00 0.00 0.00 3.66
4436 4797 2.903871 TAGCCCCTGAGCTGAGCCAT 62.904 60.000 0.00 0.00 44.67 4.40
4437 4798 3.623934 TAGCCCCTGAGCTGAGCCA 62.624 63.158 0.00 0.00 44.67 4.75
4438 4799 2.765807 TAGCCCCTGAGCTGAGCC 60.766 66.667 0.00 0.00 44.67 4.70
4439 4800 2.503546 GTAGCCCCTGAGCTGAGC 59.496 66.667 0.00 0.00 44.67 4.26
4440 4801 1.053264 ATGGTAGCCCCTGAGCTGAG 61.053 60.000 0.00 0.00 44.67 3.35
4441 4802 1.003442 ATGGTAGCCCCTGAGCTGA 59.997 57.895 0.00 0.00 44.67 4.26
4442 4803 1.340399 TGATGGTAGCCCCTGAGCTG 61.340 60.000 0.00 0.00 44.67 4.24
4444 4805 1.352083 TATGATGGTAGCCCCTGAGC 58.648 55.000 0.00 0.00 0.00 4.26
4539 4900 4.740822 CCCTGGGTTGGGGCGAAG 62.741 72.222 3.97 0.00 43.45 3.79
4672 5033 6.018588 CGATAACAAGACCACAACAAAGTACA 60.019 38.462 0.00 0.00 0.00 2.90
4686 5047 5.277825 CCATGTCTCTCTCGATAACAAGAC 58.722 45.833 0.00 0.00 34.98 3.01
4694 5055 1.106351 AGCGCCATGTCTCTCTCGAT 61.106 55.000 2.29 0.00 0.00 3.59
4695 5056 1.750780 AGCGCCATGTCTCTCTCGA 60.751 57.895 2.29 0.00 0.00 4.04
4719 5080 9.797556 AAACTAAATTTGACTCTGGTAAACAAC 57.202 29.630 0.00 0.00 0.00 3.32
4819 5180 9.229784 CTCAGAAACAAATATGATTGCACATAC 57.770 33.333 0.00 0.00 35.91 2.39
4829 5190 8.143835 TCATCGCTATCTCAGAAACAAATATGA 58.856 33.333 0.00 0.00 0.00 2.15
4848 5209 6.291377 ACACATATTTATGGAAGTCATCGCT 58.709 36.000 2.85 0.00 38.00 4.93
4917 5279 5.306160 ACAGTACTGTTACTCCTTGCCTAAA 59.694 40.000 22.95 0.00 41.83 1.85
4927 5289 8.535690 AGCTGAAATTTACAGTACTGTTACTC 57.464 34.615 32.15 20.38 41.83 2.59
5064 5618 6.645415 CCAAGATGGTTACTGGATACGATAAC 59.355 42.308 0.00 0.00 32.96 1.89
5095 5649 1.536766 CAGAAAGCCGCAATCAACTCA 59.463 47.619 0.00 0.00 0.00 3.41
5104 5658 1.795768 CTAGACAACAGAAAGCCGCA 58.204 50.000 0.00 0.00 0.00 5.69
5131 5685 9.722056 ACTCAACTTTATTGATATGAAATTCGC 57.278 29.630 0.00 0.00 0.00 4.70
5178 6006 6.371548 TCAGTTTGAAATAAACCTCGAGGATG 59.628 38.462 37.69 12.24 38.94 3.51
5185 6013 9.965824 TTTTCATCTCAGTTTGAAATAAACCTC 57.034 29.630 6.43 0.00 40.46 3.85
5230 6058 1.063806 CACTGAACTCTGCTGTACGC 58.936 55.000 3.22 3.22 39.77 4.42
5231 6059 2.054363 CACACTGAACTCTGCTGTACG 58.946 52.381 0.00 0.00 0.00 3.67
5232 6060 2.224066 ACCACACTGAACTCTGCTGTAC 60.224 50.000 0.00 0.00 0.00 2.90
5428 7153 7.687941 ATTGGTATGAAATTCGACAGACTTT 57.312 32.000 0.00 0.00 32.85 2.66
5518 7243 2.233431 TGTATGTGGGCATGGCTTTTTC 59.767 45.455 19.78 2.17 36.58 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.