Multiple sequence alignment - TraesCS6B01G196600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G196600 chr6B 100.000 2591 0 0 1 2591 233022702 233025292 0.000000e+00 4785
1 TraesCS6B01G196600 chr6B 81.773 609 77 25 991 1591 233013887 233014469 1.800000e-131 479
2 TraesCS6B01G196600 chr6D 92.637 1589 85 17 718 2285 134688634 134690211 0.000000e+00 2257
3 TraesCS6B01G196600 chr6D 92.322 1589 88 19 718 2285 134283443 134285018 0.000000e+00 2228
4 TraesCS6B01G196600 chr6D 81.366 644 80 30 984 1614 134279456 134280072 3.000000e-134 488
5 TraesCS6B01G196600 chr6D 78.129 823 118 40 804 1591 134676303 134677098 1.400000e-127 466
6 TraesCS6B01G196600 chr6D 80.630 635 85 28 991 1614 134682681 134683288 8.450000e-125 457
7 TraesCS6B01G196600 chr6D 80.624 609 87 21 991 1591 134241239 134241824 2.370000e-120 442
8 TraesCS6B01G196600 chr6A 93.902 820 36 6 910 1715 175629275 175630094 0.000000e+00 1225
9 TraesCS6B01G196600 chr6A 83.148 629 62 14 1 604 175628365 175628974 3.800000e-148 534
10 TraesCS6B01G196600 chr6A 81.190 622 79 25 984 1591 175621926 175622523 1.400000e-127 466
11 TraesCS6B01G196600 chr6A 89.735 302 17 4 1707 2008 175636443 175636730 8.760000e-100 374
12 TraesCS6B01G196600 chr6A 86.294 197 19 4 721 912 175629046 175629239 9.400000e-50 207
13 TraesCS6B01G196600 chr6A 87.162 148 7 4 2135 2270 175636733 175636880 9.600000e-35 158
14 TraesCS6B01G196600 chr4B 98.095 315 5 1 2278 2591 370705927 370705613 4.870000e-152 547
15 TraesCS6B01G196600 chr4B 90.833 120 11 0 602 721 471336355 471336236 7.420000e-36 161
16 TraesCS6B01G196600 chr5A 98.392 311 4 1 2282 2591 342567651 342567341 1.750000e-151 545
17 TraesCS6B01G196600 chr5A 97.476 317 6 2 2276 2591 602451632 602451947 8.160000e-150 540
18 TraesCS6B01G196600 chr5A 91.525 118 10 0 602 719 505594260 505594143 2.060000e-36 163
19 TraesCS6B01G196600 chr7A 97.492 319 6 2 2275 2591 317175968 317176286 6.310000e-151 544
20 TraesCS6B01G196600 chr7A 98.382 309 4 1 2284 2591 735667736 735667428 2.270000e-150 542
21 TraesCS6B01G196600 chr7A 97.476 317 6 2 2276 2591 732748219 732747904 8.160000e-150 540
22 TraesCS6B01G196600 chr5B 98.083 313 4 2 2280 2591 595128816 595129127 6.310000e-151 544
23 TraesCS6B01G196600 chr5B 92.373 118 9 0 602 719 618275907 618275790 4.430000e-38 169
24 TraesCS6B01G196600 chr5B 91.129 124 10 1 597 720 451432866 451432988 1.590000e-37 167
25 TraesCS6B01G196600 chr5B 88.462 130 13 2 598 727 640419672 640419799 3.450000e-34 156
26 TraesCS6B01G196600 chr2A 97.484 318 6 2 2275 2591 740400594 740400910 2.270000e-150 542
27 TraesCS6B01G196600 chr2A 97.476 317 7 1 2276 2591 423776440 423776124 8.160000e-150 540
28 TraesCS6B01G196600 chr7B 92.437 119 9 0 603 721 677958272 677958390 1.230000e-38 171
29 TraesCS6B01G196600 chr7B 91.525 118 10 0 602 719 119095282 119095399 2.060000e-36 163
30 TraesCS6B01G196600 chr4A 92.308 117 9 0 603 719 544199321 544199437 1.590000e-37 167
31 TraesCS6B01G196600 chr3A 90.756 119 11 0 602 720 704762871 704762753 2.670000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G196600 chr6B 233022702 233025292 2590 False 4785.000000 4785 100.000000 1 2591 1 chr6B.!!$F2 2590
1 TraesCS6B01G196600 chr6B 233013887 233014469 582 False 479.000000 479 81.773000 991 1591 1 chr6B.!!$F1 600
2 TraesCS6B01G196600 chr6D 134688634 134690211 1577 False 2257.000000 2257 92.637000 718 2285 1 chr6D.!!$F4 1567
3 TraesCS6B01G196600 chr6D 134279456 134285018 5562 False 1358.000000 2228 86.844000 718 2285 2 chr6D.!!$F5 1567
4 TraesCS6B01G196600 chr6D 134676303 134677098 795 False 466.000000 466 78.129000 804 1591 1 chr6D.!!$F2 787
5 TraesCS6B01G196600 chr6D 134682681 134683288 607 False 457.000000 457 80.630000 991 1614 1 chr6D.!!$F3 623
6 TraesCS6B01G196600 chr6D 134241239 134241824 585 False 442.000000 442 80.624000 991 1591 1 chr6D.!!$F1 600
7 TraesCS6B01G196600 chr6A 175628365 175630094 1729 False 655.333333 1225 87.781333 1 1715 3 chr6A.!!$F2 1714
8 TraesCS6B01G196600 chr6A 175621926 175622523 597 False 466.000000 466 81.190000 984 1591 1 chr6A.!!$F1 607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
715 739 0.043637 AGTATTTCGGGGTGGAGGGA 59.956 55.0 0.0 0.0 0.0 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2534 6922 0.17899 AAGTTCCAAGCACCCCTGAC 60.179 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 0.538746 CCCCACCCACACCAGTTAAC 60.539 60.000 0.00 0.00 0.00 2.01
86 87 1.597302 CATCTCCGGCATGCTCCTG 60.597 63.158 18.92 6.32 0.00 3.86
87 88 1.763655 ATCTCCGGCATGCTCCTGA 60.764 57.895 18.92 11.53 0.00 3.86
98 99 2.781158 GCTCCTGACGAGGCCTCTC 61.781 68.421 29.73 23.89 39.57 3.20
105 106 2.438614 CGAGGCCTCTCCGAGACA 60.439 66.667 29.73 0.00 40.77 3.41
106 107 1.826054 CGAGGCCTCTCCGAGACAT 60.826 63.158 29.73 0.00 40.77 3.06
107 108 1.388065 CGAGGCCTCTCCGAGACATT 61.388 60.000 29.73 0.00 40.77 2.71
108 109 0.103937 GAGGCCTCTCCGAGACATTG 59.896 60.000 26.25 0.00 40.77 2.82
116 117 0.109272 TCCGAGACATTGTGAGTCGC 60.109 55.000 0.00 0.00 40.84 5.19
124 125 0.249699 ATTGTGAGTCGCGACCAACA 60.250 50.000 34.08 31.74 0.00 3.33
140 141 1.805943 CAACAACATCGCCATGTCTCA 59.194 47.619 0.00 0.00 42.89 3.27
147 148 0.103026 TCGCCATGTCTCAATCTCGG 59.897 55.000 0.00 0.00 0.00 4.63
150 151 0.833287 CCATGTCTCAATCTCGGGGT 59.167 55.000 0.00 0.00 0.00 4.95
157 158 1.200020 CTCAATCTCGGGGTTTTGCAC 59.800 52.381 0.00 0.00 0.00 4.57
170 171 3.243602 GGTTTTGCACGGGAATTAGTTGT 60.244 43.478 0.00 0.00 0.00 3.32
171 172 4.023021 GGTTTTGCACGGGAATTAGTTGTA 60.023 41.667 0.00 0.00 0.00 2.41
172 173 4.752661 TTTGCACGGGAATTAGTTGTAC 57.247 40.909 0.00 0.00 0.00 2.90
173 174 2.702261 TGCACGGGAATTAGTTGTACC 58.298 47.619 0.00 0.00 0.00 3.34
174 175 2.038689 TGCACGGGAATTAGTTGTACCA 59.961 45.455 0.00 0.00 0.00 3.25
175 176 3.075884 GCACGGGAATTAGTTGTACCAA 58.924 45.455 0.00 0.00 0.00 3.67
176 177 3.120095 GCACGGGAATTAGTTGTACCAAC 60.120 47.826 0.00 0.00 0.00 3.77
177 178 4.066490 CACGGGAATTAGTTGTACCAACA 58.934 43.478 9.53 0.00 0.00 3.33
178 179 4.515944 CACGGGAATTAGTTGTACCAACAA 59.484 41.667 9.53 3.07 43.32 2.83
179 180 5.182380 CACGGGAATTAGTTGTACCAACAAT 59.818 40.000 9.53 4.94 46.84 2.71
180 181 5.771165 ACGGGAATTAGTTGTACCAACAATT 59.229 36.000 9.53 11.49 46.84 2.32
181 182 6.265876 ACGGGAATTAGTTGTACCAACAATTT 59.734 34.615 9.53 0.36 46.84 1.82
182 183 7.149307 CGGGAATTAGTTGTACCAACAATTTT 58.851 34.615 9.53 0.00 46.84 1.82
183 184 7.654116 CGGGAATTAGTTGTACCAACAATTTTT 59.346 33.333 9.53 0.00 46.84 1.94
211 212 1.753956 CGGGTCAAGAAAAGCAAACG 58.246 50.000 0.00 0.00 0.00 3.60
227 228 9.570488 AAAAGCAAACGTGTTTTACTATTAACA 57.430 25.926 0.00 0.00 37.20 2.41
228 229 9.738832 AAAGCAAACGTGTTTTACTATTAACAT 57.261 25.926 0.00 0.00 36.52 2.71
267 271 6.898041 TCTTCATTTGTCTTGGTAAATGACG 58.102 36.000 10.80 9.75 46.85 4.35
281 285 6.015180 TGGTAAATGACGTGAACTAAGTACCT 60.015 38.462 0.00 0.00 0.00 3.08
282 286 7.176515 TGGTAAATGACGTGAACTAAGTACCTA 59.823 37.037 0.00 0.00 0.00 3.08
284 288 5.573337 ATGACGTGAACTAAGTACCTACC 57.427 43.478 0.00 0.00 0.00 3.18
305 309 4.103311 ACCATACCTATTTCTCAAGGCTCC 59.897 45.833 0.00 0.00 36.24 4.70
315 319 0.472471 TCAAGGCTCCGAAAGTTGGT 59.528 50.000 0.00 0.00 0.00 3.67
347 351 5.509771 CAAACATGTTTGTCGACATCTTGA 58.490 37.500 33.55 11.83 43.52 3.02
409 425 6.677781 ATGTGTGTAAGCAAACGCTATATT 57.322 33.333 4.03 0.00 39.40 1.28
410 426 6.489127 TGTGTGTAAGCAAACGCTATATTT 57.511 33.333 4.03 0.00 39.40 1.40
418 434 9.763465 GTAAGCAAACGCTATATTTGAGTTAAA 57.237 29.630 1.76 0.00 39.40 1.52
420 436 7.472543 AGCAAACGCTATATTTGAGTTAAAGG 58.527 34.615 1.76 0.00 39.01 3.11
436 458 8.630037 TGAGTTAAAGGAGAAGAAATGTTTTCC 58.370 33.333 0.00 0.00 0.00 3.13
472 496 3.841255 AGGAGAAACCCAGTTCCTTCTAG 59.159 47.826 0.00 0.00 36.69 2.43
477 501 5.425862 AGAAACCCAGTTCCTTCTAGGTATC 59.574 44.000 0.00 0.00 36.53 2.24
480 504 4.656112 ACCCAGTTCCTTCTAGGTATCATG 59.344 45.833 0.00 0.00 36.53 3.07
484 508 7.210873 CCAGTTCCTTCTAGGTATCATGTTAC 58.789 42.308 5.51 5.51 36.53 2.50
487 511 9.710818 AGTTCCTTCTAGGTATCATGTTACTTA 57.289 33.333 12.51 9.07 36.53 2.24
522 546 8.943909 AGACTAGGTGCTAATGTTATTGTTAC 57.056 34.615 0.00 0.00 0.00 2.50
528 552 8.512138 AGGTGCTAATGTTATTGTTACTGTTTC 58.488 33.333 0.00 0.00 0.00 2.78
562 586 6.959639 TGAAATTAAGCACCTTCTTGAAGT 57.040 33.333 9.21 0.00 0.00 3.01
565 589 1.884235 AAGCACCTTCTTGAAGTCCG 58.116 50.000 9.21 0.00 0.00 4.79
567 591 1.001406 AGCACCTTCTTGAAGTCCGAG 59.999 52.381 9.21 0.00 0.00 4.63
583 607 6.142818 AGTCCGAGAGTTTATTCTGATGAG 57.857 41.667 0.00 0.00 0.00 2.90
608 632 9.125026 AGAATTGATCAACAACATAATACTCCC 57.875 33.333 11.07 0.00 41.52 4.30
609 633 9.125026 GAATTGATCAACAACATAATACTCCCT 57.875 33.333 11.07 0.00 41.52 4.20
613 637 4.468510 TCAACAACATAATACTCCCTCCGT 59.531 41.667 0.00 0.00 0.00 4.69
615 639 3.387050 ACAACATAATACTCCCTCCGTCC 59.613 47.826 0.00 0.00 0.00 4.79
617 641 2.158564 ACATAATACTCCCTCCGTCCGA 60.159 50.000 0.00 0.00 0.00 4.55
618 642 2.734755 TAATACTCCCTCCGTCCGAA 57.265 50.000 0.00 0.00 0.00 4.30
619 643 1.856629 AATACTCCCTCCGTCCGAAA 58.143 50.000 0.00 0.00 0.00 3.46
621 645 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
622 646 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
623 647 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
624 648 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
625 649 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
628 652 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
629 653 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
631 655 3.256383 TCCGTCCGAAAATACTTGTCAGA 59.744 43.478 0.00 0.00 0.00 3.27
632 656 3.612860 CCGTCCGAAAATACTTGTCAGAG 59.387 47.826 0.00 0.00 0.00 3.35
634 658 4.921515 CGTCCGAAAATACTTGTCAGAGAA 59.078 41.667 0.00 0.00 0.00 2.87
636 660 6.090898 CGTCCGAAAATACTTGTCAGAGAAAT 59.909 38.462 0.00 0.00 0.00 2.17
637 661 7.237173 GTCCGAAAATACTTGTCAGAGAAATG 58.763 38.462 0.00 0.00 0.00 2.32
638 662 6.024049 CCGAAAATACTTGTCAGAGAAATGC 58.976 40.000 0.00 0.00 0.00 3.56
640 664 7.246311 CGAAAATACTTGTCAGAGAAATGCAT 58.754 34.615 0.00 0.00 0.00 3.96
642 666 9.495754 GAAAATACTTGTCAGAGAAATGCATAC 57.504 33.333 0.00 0.00 0.00 2.39
644 668 8.565896 AATACTTGTCAGAGAAATGCATACAA 57.434 30.769 0.00 4.13 0.00 2.41
646 670 7.458409 ACTTGTCAGAGAAATGCATACAAAT 57.542 32.000 0.00 0.00 0.00 2.32
647 671 7.310664 ACTTGTCAGAGAAATGCATACAAATG 58.689 34.615 0.00 0.00 36.09 2.32
648 672 6.198650 TGTCAGAGAAATGCATACAAATGG 57.801 37.500 0.00 0.00 33.38 3.16
650 674 6.604396 TGTCAGAGAAATGCATACAAATGGAT 59.396 34.615 0.00 0.00 45.17 3.41
651 675 6.916387 GTCAGAGAAATGCATACAAATGGATG 59.084 38.462 0.00 1.04 42.73 3.51
653 677 7.774625 TCAGAGAAATGCATACAAATGGATGTA 59.225 33.333 0.00 3.25 42.73 2.29
656 680 9.754382 GAGAAATGCATACAAATGGATGTATTT 57.246 29.630 25.27 25.27 45.29 1.40
662 686 9.407380 TGCATACAAATGGATGTATTTAGAACT 57.593 29.630 7.42 0.00 42.40 3.01
691 715 8.927675 ATACGTCTAGATATATCCATTCCTCC 57.072 38.462 9.18 0.00 0.00 4.30
692 716 5.823570 ACGTCTAGATATATCCATTCCTCCG 59.176 44.000 9.18 4.42 0.00 4.63
693 717 6.056236 CGTCTAGATATATCCATTCCTCCGA 58.944 44.000 9.18 0.00 0.00 4.55
694 718 6.712998 CGTCTAGATATATCCATTCCTCCGAT 59.287 42.308 9.18 0.00 0.00 4.18
695 719 7.878644 CGTCTAGATATATCCATTCCTCCGATA 59.121 40.741 9.18 0.00 0.00 2.92
696 720 9.575868 GTCTAGATATATCCATTCCTCCGATAA 57.424 37.037 9.18 0.00 0.00 1.75
697 721 9.800572 TCTAGATATATCCATTCCTCCGATAAG 57.199 37.037 9.18 0.00 0.00 1.73
698 722 9.581289 CTAGATATATCCATTCCTCCGATAAGT 57.419 37.037 9.18 0.00 0.00 2.24
704 728 5.779922 TCCATTCCTCCGATAAGTATTTCG 58.220 41.667 0.00 0.00 35.19 3.46
711 735 3.738830 CGATAAGTATTTCGGGGTGGA 57.261 47.619 0.00 0.00 0.00 4.02
712 736 3.650139 CGATAAGTATTTCGGGGTGGAG 58.350 50.000 0.00 0.00 0.00 3.86
713 737 3.554337 CGATAAGTATTTCGGGGTGGAGG 60.554 52.174 0.00 0.00 0.00 4.30
714 738 0.916809 AAGTATTTCGGGGTGGAGGG 59.083 55.000 0.00 0.00 0.00 4.30
715 739 0.043637 AGTATTTCGGGGTGGAGGGA 59.956 55.000 0.00 0.00 0.00 4.20
716 740 0.468648 GTATTTCGGGGTGGAGGGAG 59.531 60.000 0.00 0.00 0.00 4.30
719 743 0.043637 TTTCGGGGTGGAGGGAGTAT 59.956 55.000 0.00 0.00 0.00 2.12
735 759 7.496263 GGAGGGAGTATTGTATTTCAGAGTTTC 59.504 40.741 0.00 0.00 0.00 2.78
737 764 8.606830 AGGGAGTATTGTATTTCAGAGTTTCTT 58.393 33.333 0.00 0.00 0.00 2.52
785 812 6.665248 CAGGGAATAAATTCTCAGTTTTCCCT 59.335 38.462 13.30 13.30 42.97 4.20
869 902 5.649831 AGCAAAGGATTGAAGTGATAAGTCC 59.350 40.000 0.00 0.00 38.94 3.85
893 927 3.815962 GTCTCCCTTTTCTTGTCACTTCC 59.184 47.826 0.00 0.00 0.00 3.46
914 986 3.494048 CCCTGATCTCAGCACATAACCTC 60.494 52.174 1.51 0.00 42.47 3.85
917 989 5.508825 CCTGATCTCAGCACATAACCTCTAC 60.509 48.000 1.51 0.00 42.47 2.59
1434 1530 2.654877 GAGGTGGAAGACGGCGAA 59.345 61.111 16.62 0.00 0.00 4.70
1482 1578 4.065281 CGGACGCTCGGGGAGTTT 62.065 66.667 0.00 0.00 31.39 2.66
1760 6132 5.930209 AGGGTATGTGAATATGTCCCATT 57.070 39.130 0.00 0.00 36.24 3.16
1778 6150 6.258727 GTCCCATTGTGTATGTGATTCACTAG 59.741 42.308 17.26 0.00 35.11 2.57
1780 6152 6.823182 CCCATTGTGTATGTGATTCACTAGAA 59.177 38.462 17.26 7.04 35.11 2.10
1781 6153 7.500227 CCCATTGTGTATGTGATTCACTAGAAT 59.500 37.037 17.26 5.61 38.61 2.40
1793 6168 9.534565 GTGATTCACTAGAATACTAGATGCAAA 57.465 33.333 9.59 0.12 46.34 3.68
1814 6189 6.035975 GCAAAACTACAAGAATGCAAAACACT 59.964 34.615 0.00 0.00 34.10 3.55
1823 6198 6.152932 AGAATGCAAAACACTGATTCTTGT 57.847 33.333 0.00 0.00 30.82 3.16
1824 6199 5.981315 AGAATGCAAAACACTGATTCTTGTG 59.019 36.000 0.00 8.21 39.80 3.33
1852 6227 7.445096 TGTTAGATTTTCAGCAGATTCTGTTCA 59.555 33.333 14.90 0.00 35.63 3.18
1853 6228 6.889301 AGATTTTCAGCAGATTCTGTTCAA 57.111 33.333 14.90 0.00 35.63 2.69
1859 6234 7.509141 TTCAGCAGATTCTGTTCAATTTACA 57.491 32.000 14.90 0.00 35.63 2.41
1900 6275 6.212955 GGCAACTAAAAATTTCTGTAGCACA 58.787 36.000 0.00 0.00 0.00 4.57
1920 6295 7.988937 AGCACAAATCCATATTAATAGGGAGA 58.011 34.615 27.52 11.46 45.22 3.71
2023 6398 4.069232 CGGCGCCTTGGAGTCTCA 62.069 66.667 26.68 0.00 0.00 3.27
2037 6412 0.179067 GTCTCAACGGGTGTGAACCA 60.179 55.000 0.00 0.00 31.74 3.67
2094 6471 1.932604 GCGAGTGAGACTGGACTGTTG 60.933 57.143 0.00 0.00 0.00 3.33
2124 6501 3.869272 GCAGGATCGTTGCTGGCG 61.869 66.667 15.62 0.00 41.31 5.69
2187 6564 1.470979 CGTTGAGGGGAATACTGGACG 60.471 57.143 0.00 0.00 0.00 4.79
2285 6673 7.648142 CCAAACTACATAAACAAAGCTTCAGA 58.352 34.615 0.00 0.00 0.00 3.27
2286 6674 7.805071 CCAAACTACATAAACAAAGCTTCAGAG 59.195 37.037 0.00 0.00 0.00 3.35
2300 6688 2.229675 TCAGAGCATGCTTGGATACG 57.770 50.000 23.61 5.68 42.51 3.06
2301 6689 1.482182 TCAGAGCATGCTTGGATACGT 59.518 47.619 23.61 0.00 42.51 3.57
2302 6690 2.093500 TCAGAGCATGCTTGGATACGTT 60.093 45.455 23.61 0.00 42.51 3.99
2303 6691 2.679837 CAGAGCATGCTTGGATACGTTT 59.320 45.455 23.61 0.00 42.51 3.60
2304 6692 3.127548 CAGAGCATGCTTGGATACGTTTT 59.872 43.478 23.61 0.00 42.51 2.43
2305 6693 4.332543 CAGAGCATGCTTGGATACGTTTTA 59.667 41.667 23.61 0.00 42.51 1.52
2306 6694 4.572389 AGAGCATGCTTGGATACGTTTTAG 59.428 41.667 23.61 0.00 42.51 1.85
2307 6695 4.261801 AGCATGCTTGGATACGTTTTAGT 58.738 39.130 16.30 0.00 42.51 2.24
2308 6696 4.332819 AGCATGCTTGGATACGTTTTAGTC 59.667 41.667 16.30 0.00 42.51 2.59
2309 6697 4.495844 GCATGCTTGGATACGTTTTAGTCC 60.496 45.833 11.37 0.00 42.51 3.85
2310 6698 4.274602 TGCTTGGATACGTTTTAGTCCA 57.725 40.909 0.00 0.00 38.90 4.02
2311 6699 4.839121 TGCTTGGATACGTTTTAGTCCAT 58.161 39.130 0.00 0.00 40.22 3.41
2312 6700 4.634004 TGCTTGGATACGTTTTAGTCCATG 59.366 41.667 0.00 4.51 40.22 3.66
2313 6701 4.873827 GCTTGGATACGTTTTAGTCCATGA 59.126 41.667 16.35 2.89 40.22 3.07
2314 6702 5.220605 GCTTGGATACGTTTTAGTCCATGAC 60.221 44.000 16.35 0.00 40.22 3.06
2315 6703 5.670792 TGGATACGTTTTAGTCCATGACT 57.329 39.130 0.00 1.94 43.05 3.41
2316 6704 6.778834 TGGATACGTTTTAGTCCATGACTA 57.221 37.500 0.00 0.00 41.35 2.59
2317 6705 7.172868 TGGATACGTTTTAGTCCATGACTAA 57.827 36.000 11.59 11.59 45.67 2.24
2327 6715 5.422214 AGTCCATGACTAAAAGTAGTGGG 57.578 43.478 0.00 0.00 41.51 4.61
2328 6716 5.091552 AGTCCATGACTAAAAGTAGTGGGA 58.908 41.667 0.00 0.00 41.51 4.37
2329 6717 5.046520 AGTCCATGACTAAAAGTAGTGGGAC 60.047 44.000 14.90 14.90 44.11 4.46
2330 6718 5.046520 GTCCATGACTAAAAGTAGTGGGACT 60.047 44.000 15.18 0.00 42.54 3.85
2331 6719 6.154021 GTCCATGACTAAAAGTAGTGGGACTA 59.846 42.308 15.18 0.00 42.54 2.59
2332 6720 6.727231 TCCATGACTAAAAGTAGTGGGACTAA 59.273 38.462 0.00 0.00 40.82 2.24
2333 6721 7.236019 TCCATGACTAAAAGTAGTGGGACTAAA 59.764 37.037 0.00 0.00 40.82 1.85
2334 6722 7.881232 CCATGACTAAAAGTAGTGGGACTAAAA 59.119 37.037 0.00 0.00 40.82 1.52
2335 6723 8.718734 CATGACTAAAAGTAGTGGGACTAAAAC 58.281 37.037 0.00 0.00 40.82 2.43
2336 6724 8.026396 TGACTAAAAGTAGTGGGACTAAAACT 57.974 34.615 0.00 0.00 40.82 2.66
2337 6725 8.488668 TGACTAAAAGTAGTGGGACTAAAACTT 58.511 33.333 0.00 0.00 40.82 2.66
2338 6726 8.672823 ACTAAAAGTAGTGGGACTAAAACTTG 57.327 34.615 0.00 0.00 39.20 3.16
2339 6727 6.387041 AAAAGTAGTGGGACTAAAACTTGC 57.613 37.500 0.00 0.00 31.62 4.01
2340 6728 4.976540 AGTAGTGGGACTAAAACTTGCT 57.023 40.909 0.00 0.00 31.62 3.91
2341 6729 6.429521 AAGTAGTGGGACTAAAACTTGCTA 57.570 37.500 0.00 0.00 31.62 3.49
2342 6730 6.038997 AGTAGTGGGACTAAAACTTGCTAG 57.961 41.667 0.00 0.00 31.62 3.42
2343 6731 4.976540 AGTGGGACTAAAACTTGCTAGT 57.023 40.909 0.00 0.00 35.68 2.57
2344 6732 4.895961 AGTGGGACTAAAACTTGCTAGTC 58.104 43.478 0.07 0.62 42.17 2.59
2345 6733 4.593634 AGTGGGACTAAAACTTGCTAGTCT 59.406 41.667 0.07 0.00 42.42 3.24
2346 6734 4.930405 GTGGGACTAAAACTTGCTAGTCTC 59.070 45.833 0.07 1.39 43.29 3.36
2347 6735 5.148651 GGGACTAAAACTTGCTAGTCTCA 57.851 43.478 0.07 0.00 42.76 3.27
2348 6736 4.930405 GGGACTAAAACTTGCTAGTCTCAC 59.070 45.833 0.07 0.00 42.76 3.51
2349 6737 4.930405 GGACTAAAACTTGCTAGTCTCACC 59.070 45.833 0.07 0.00 42.42 4.02
2350 6738 4.895961 ACTAAAACTTGCTAGTCTCACCC 58.104 43.478 0.07 0.00 31.99 4.61
2351 6739 3.857157 AAAACTTGCTAGTCTCACCCA 57.143 42.857 0.07 0.00 31.99 4.51
2352 6740 4.373156 AAAACTTGCTAGTCTCACCCAT 57.627 40.909 0.07 0.00 31.99 4.00
2353 6741 3.340814 AACTTGCTAGTCTCACCCATG 57.659 47.619 0.07 0.00 31.99 3.66
2354 6742 1.065854 ACTTGCTAGTCTCACCCATGC 60.066 52.381 0.00 0.00 0.00 4.06
2355 6743 1.209019 CTTGCTAGTCTCACCCATGCT 59.791 52.381 0.00 0.00 0.00 3.79
2356 6744 1.279496 TGCTAGTCTCACCCATGCTT 58.721 50.000 0.00 0.00 0.00 3.91
2357 6745 1.065926 TGCTAGTCTCACCCATGCTTG 60.066 52.381 0.00 0.00 0.00 4.01
2358 6746 1.745141 GCTAGTCTCACCCATGCTTGG 60.745 57.143 11.68 11.68 43.23 3.61
2359 6747 1.833630 CTAGTCTCACCCATGCTTGGA 59.166 52.381 19.85 0.00 46.92 3.53
2360 6748 1.293062 AGTCTCACCCATGCTTGGAT 58.707 50.000 19.85 0.00 46.92 3.41
2361 6749 1.211457 AGTCTCACCCATGCTTGGATC 59.789 52.381 19.85 3.99 46.92 3.36
2362 6750 0.548031 TCTCACCCATGCTTGGATCC 59.452 55.000 19.85 4.20 46.92 3.36
2363 6751 0.256752 CTCACCCATGCTTGGATCCA 59.743 55.000 19.85 11.44 46.92 3.41
2364 6752 0.703488 TCACCCATGCTTGGATCCAA 59.297 50.000 25.53 25.53 46.92 3.53
2365 6753 1.076841 TCACCCATGCTTGGATCCAAA 59.923 47.619 26.87 14.63 46.92 3.28
2366 6754 2.112998 CACCCATGCTTGGATCCAAAT 58.887 47.619 26.87 16.27 46.92 2.32
2367 6755 3.053019 TCACCCATGCTTGGATCCAAATA 60.053 43.478 26.87 18.63 46.92 1.40
2368 6756 3.068590 CACCCATGCTTGGATCCAAATAC 59.931 47.826 26.87 19.00 46.92 1.89
2369 6757 3.052642 ACCCATGCTTGGATCCAAATACT 60.053 43.478 26.87 10.16 46.92 2.12
2370 6758 4.167892 ACCCATGCTTGGATCCAAATACTA 59.832 41.667 26.87 12.31 46.92 1.82
2371 6759 5.139727 CCCATGCTTGGATCCAAATACTAA 58.860 41.667 26.87 10.11 46.92 2.24
2372 6760 5.598005 CCCATGCTTGGATCCAAATACTAAA 59.402 40.000 26.87 8.81 46.92 1.85
2373 6761 6.098124 CCCATGCTTGGATCCAAATACTAAAA 59.902 38.462 26.87 2.67 46.92 1.52
2374 6762 7.364585 CCCATGCTTGGATCCAAATACTAAAAA 60.365 37.037 26.87 1.90 46.92 1.94
2375 6763 7.707893 CCATGCTTGGATCCAAATACTAAAAAG 59.292 37.037 26.87 12.80 46.92 2.27
2376 6764 8.469200 CATGCTTGGATCCAAATACTAAAAAGA 58.531 33.333 26.87 1.15 35.33 2.52
2377 6765 7.826690 TGCTTGGATCCAAATACTAAAAAGAC 58.173 34.615 26.87 8.83 35.33 3.01
2378 6766 7.669722 TGCTTGGATCCAAATACTAAAAAGACT 59.330 33.333 26.87 0.00 35.33 3.24
2379 6767 9.174166 GCTTGGATCCAAATACTAAAAAGACTA 57.826 33.333 26.87 0.00 35.33 2.59
2409 6797 9.935241 TCTAGTTATTGAGCATTGATTATCCTC 57.065 33.333 0.00 0.00 0.00 3.71
2410 6798 7.992754 AGTTATTGAGCATTGATTATCCTCC 57.007 36.000 0.00 0.00 0.00 4.30
2411 6799 7.520798 AGTTATTGAGCATTGATTATCCTCCA 58.479 34.615 0.00 0.00 0.00 3.86
2412 6800 8.000709 AGTTATTGAGCATTGATTATCCTCCAA 58.999 33.333 0.00 0.00 0.00 3.53
2413 6801 8.632679 GTTATTGAGCATTGATTATCCTCCAAA 58.367 33.333 0.00 0.00 0.00 3.28
2414 6802 6.455360 TTGAGCATTGATTATCCTCCAAAC 57.545 37.500 0.00 0.00 0.00 2.93
2415 6803 4.889409 TGAGCATTGATTATCCTCCAAACC 59.111 41.667 0.00 0.00 0.00 3.27
2416 6804 4.218312 AGCATTGATTATCCTCCAAACCC 58.782 43.478 0.00 0.00 0.00 4.11
2417 6805 4.078980 AGCATTGATTATCCTCCAAACCCT 60.079 41.667 0.00 0.00 0.00 4.34
2418 6806 4.279420 GCATTGATTATCCTCCAAACCCTC 59.721 45.833 0.00 0.00 0.00 4.30
2419 6807 4.519906 TTGATTATCCTCCAAACCCTCC 57.480 45.455 0.00 0.00 0.00 4.30
2420 6808 3.469859 TGATTATCCTCCAAACCCTCCA 58.530 45.455 0.00 0.00 0.00 3.86
2421 6809 3.855599 TGATTATCCTCCAAACCCTCCAA 59.144 43.478 0.00 0.00 0.00 3.53
2422 6810 4.482025 TGATTATCCTCCAAACCCTCCAAT 59.518 41.667 0.00 0.00 0.00 3.16
2423 6811 4.519906 TTATCCTCCAAACCCTCCAATC 57.480 45.455 0.00 0.00 0.00 2.67
2424 6812 0.999712 TCCTCCAAACCCTCCAATCC 59.000 55.000 0.00 0.00 0.00 3.01
2425 6813 0.704076 CCTCCAAACCCTCCAATCCA 59.296 55.000 0.00 0.00 0.00 3.41
2426 6814 1.341383 CCTCCAAACCCTCCAATCCAG 60.341 57.143 0.00 0.00 0.00 3.86
2427 6815 1.635487 CTCCAAACCCTCCAATCCAGA 59.365 52.381 0.00 0.00 0.00 3.86
2428 6816 2.041620 CTCCAAACCCTCCAATCCAGAA 59.958 50.000 0.00 0.00 0.00 3.02
2429 6817 2.171003 CCAAACCCTCCAATCCAGAAC 58.829 52.381 0.00 0.00 0.00 3.01
2430 6818 2.225117 CCAAACCCTCCAATCCAGAACT 60.225 50.000 0.00 0.00 0.00 3.01
2431 6819 3.010138 CCAAACCCTCCAATCCAGAACTA 59.990 47.826 0.00 0.00 0.00 2.24
2432 6820 4.508405 CCAAACCCTCCAATCCAGAACTAA 60.508 45.833 0.00 0.00 0.00 2.24
2433 6821 4.576330 AACCCTCCAATCCAGAACTAAG 57.424 45.455 0.00 0.00 0.00 2.18
2434 6822 2.846827 ACCCTCCAATCCAGAACTAAGG 59.153 50.000 0.00 0.00 0.00 2.69
2435 6823 3.115390 CCCTCCAATCCAGAACTAAGGA 58.885 50.000 0.00 0.00 38.50 3.36
2436 6824 3.135530 CCCTCCAATCCAGAACTAAGGAG 59.864 52.174 0.00 0.00 40.58 3.69
2437 6825 4.033709 CCTCCAATCCAGAACTAAGGAGA 58.966 47.826 7.12 0.00 42.87 3.71
2438 6826 4.100808 CCTCCAATCCAGAACTAAGGAGAG 59.899 50.000 7.12 0.00 42.87 3.20
2439 6827 4.033709 TCCAATCCAGAACTAAGGAGAGG 58.966 47.826 0.00 0.00 37.34 3.69
2440 6828 4.033709 CCAATCCAGAACTAAGGAGAGGA 58.966 47.826 0.00 0.00 37.34 3.71
2441 6829 4.471386 CCAATCCAGAACTAAGGAGAGGAA 59.529 45.833 0.00 0.00 37.34 3.36
2442 6830 5.131809 CCAATCCAGAACTAAGGAGAGGAAT 59.868 44.000 0.00 0.00 37.34 3.01
2443 6831 6.353429 CCAATCCAGAACTAAGGAGAGGAATT 60.353 42.308 0.00 0.00 37.34 2.17
2444 6832 7.147479 CCAATCCAGAACTAAGGAGAGGAATTA 60.147 40.741 0.00 0.00 37.34 1.40
2445 6833 7.996758 ATCCAGAACTAAGGAGAGGAATTAA 57.003 36.000 0.00 0.00 37.34 1.40
2446 6834 7.808279 TCCAGAACTAAGGAGAGGAATTAAA 57.192 36.000 0.00 0.00 0.00 1.52
2447 6835 8.393959 TCCAGAACTAAGGAGAGGAATTAAAT 57.606 34.615 0.00 0.00 0.00 1.40
2448 6836 8.267894 TCCAGAACTAAGGAGAGGAATTAAATG 58.732 37.037 0.00 0.00 0.00 2.32
2449 6837 8.267894 CCAGAACTAAGGAGAGGAATTAAATGA 58.732 37.037 0.00 0.00 0.00 2.57
2450 6838 9.323985 CAGAACTAAGGAGAGGAATTAAATGAG 57.676 37.037 0.00 0.00 0.00 2.90
2451 6839 8.490311 AGAACTAAGGAGAGGAATTAAATGAGG 58.510 37.037 0.00 0.00 0.00 3.86
2452 6840 7.996758 ACTAAGGAGAGGAATTAAATGAGGA 57.003 36.000 0.00 0.00 0.00 3.71
2453 6841 8.028652 ACTAAGGAGAGGAATTAAATGAGGAG 57.971 38.462 0.00 0.00 0.00 3.69
2454 6842 7.846823 ACTAAGGAGAGGAATTAAATGAGGAGA 59.153 37.037 0.00 0.00 0.00 3.71
2455 6843 6.745794 AGGAGAGGAATTAAATGAGGAGAG 57.254 41.667 0.00 0.00 0.00 3.20
2456 6844 6.448202 AGGAGAGGAATTAAATGAGGAGAGA 58.552 40.000 0.00 0.00 0.00 3.10
2457 6845 6.554605 AGGAGAGGAATTAAATGAGGAGAGAG 59.445 42.308 0.00 0.00 0.00 3.20
2458 6846 6.553100 GGAGAGGAATTAAATGAGGAGAGAGA 59.447 42.308 0.00 0.00 0.00 3.10
2459 6847 7.255942 GGAGAGGAATTAAATGAGGAGAGAGAG 60.256 44.444 0.00 0.00 0.00 3.20
2460 6848 7.361438 AGAGGAATTAAATGAGGAGAGAGAGA 58.639 38.462 0.00 0.00 0.00 3.10
2461 6849 7.506938 AGAGGAATTAAATGAGGAGAGAGAGAG 59.493 40.741 0.00 0.00 0.00 3.20
2462 6850 6.041979 AGGAATTAAATGAGGAGAGAGAGAGC 59.958 42.308 0.00 0.00 0.00 4.09
2463 6851 6.041979 GGAATTAAATGAGGAGAGAGAGAGCT 59.958 42.308 0.00 0.00 0.00 4.09
2464 6852 7.232534 GGAATTAAATGAGGAGAGAGAGAGCTA 59.767 40.741 0.00 0.00 0.00 3.32
2465 6853 8.546083 AATTAAATGAGGAGAGAGAGAGCTAA 57.454 34.615 0.00 0.00 0.00 3.09
2466 6854 8.725606 ATTAAATGAGGAGAGAGAGAGCTAAT 57.274 34.615 0.00 0.00 0.00 1.73
2467 6855 9.821240 ATTAAATGAGGAGAGAGAGAGCTAATA 57.179 33.333 0.00 0.00 0.00 0.98
2468 6856 7.524717 AAATGAGGAGAGAGAGAGCTAATAC 57.475 40.000 0.00 0.00 0.00 1.89
2469 6857 5.638530 TGAGGAGAGAGAGAGCTAATACA 57.361 43.478 0.00 0.00 0.00 2.29
2470 6858 6.199557 TGAGGAGAGAGAGAGCTAATACAT 57.800 41.667 0.00 0.00 0.00 2.29
2471 6859 7.323052 TGAGGAGAGAGAGAGCTAATACATA 57.677 40.000 0.00 0.00 0.00 2.29
2472 6860 7.927788 TGAGGAGAGAGAGAGCTAATACATAT 58.072 38.462 0.00 0.00 0.00 1.78
2473 6861 8.390143 TGAGGAGAGAGAGAGCTAATACATATT 58.610 37.037 0.00 0.00 0.00 1.28
2474 6862 9.243105 GAGGAGAGAGAGAGCTAATACATATTT 57.757 37.037 0.00 0.00 0.00 1.40
2475 6863 9.600432 AGGAGAGAGAGAGCTAATACATATTTT 57.400 33.333 0.00 0.00 0.00 1.82
2518 6906 9.660180 CTAAAAGATTTTAGCCTCAAGACTAGT 57.340 33.333 11.10 0.00 41.97 2.57
2519 6907 8.554835 AAAAGATTTTAGCCTCAAGACTAGTC 57.445 34.615 15.41 15.41 0.00 2.59
2520 6908 6.228616 AGATTTTAGCCTCAAGACTAGTCC 57.771 41.667 19.38 2.89 0.00 3.85
2521 6909 5.961421 AGATTTTAGCCTCAAGACTAGTCCT 59.039 40.000 19.38 10.36 0.00 3.85
2522 6910 7.126733 AGATTTTAGCCTCAAGACTAGTCCTA 58.873 38.462 19.38 9.39 0.00 2.94
2523 6911 6.777213 TTTTAGCCTCAAGACTAGTCCTAG 57.223 41.667 19.38 13.33 39.04 3.02
2537 6925 7.499200 ACTAGTCCTAGTCTCTCTTTAGTCA 57.501 40.000 1.08 0.00 42.30 3.41
2538 6926 7.562135 ACTAGTCCTAGTCTCTCTTTAGTCAG 58.438 42.308 1.08 0.00 42.30 3.51
2539 6927 5.751586 AGTCCTAGTCTCTCTTTAGTCAGG 58.248 45.833 0.00 0.00 0.00 3.86
2540 6928 4.885325 GTCCTAGTCTCTCTTTAGTCAGGG 59.115 50.000 0.00 0.00 0.00 4.45
2541 6929 4.079672 TCCTAGTCTCTCTTTAGTCAGGGG 60.080 50.000 0.00 0.00 0.00 4.79
2542 6930 3.837399 AGTCTCTCTTTAGTCAGGGGT 57.163 47.619 0.00 0.00 0.00 4.95
2543 6931 3.436243 AGTCTCTCTTTAGTCAGGGGTG 58.564 50.000 0.00 0.00 0.00 4.61
2544 6932 2.093921 GTCTCTCTTTAGTCAGGGGTGC 60.094 54.545 0.00 0.00 0.00 5.01
2545 6933 2.183679 CTCTCTTTAGTCAGGGGTGCT 58.816 52.381 0.00 0.00 0.00 4.40
2546 6934 2.569404 CTCTCTTTAGTCAGGGGTGCTT 59.431 50.000 0.00 0.00 0.00 3.91
2547 6935 2.303022 TCTCTTTAGTCAGGGGTGCTTG 59.697 50.000 0.00 0.00 0.00 4.01
2548 6936 1.351017 TCTTTAGTCAGGGGTGCTTGG 59.649 52.381 0.00 0.00 0.00 3.61
2549 6937 1.351017 CTTTAGTCAGGGGTGCTTGGA 59.649 52.381 0.00 0.00 0.00 3.53
2550 6938 1.440618 TTAGTCAGGGGTGCTTGGAA 58.559 50.000 0.00 0.00 0.00 3.53
2551 6939 0.690762 TAGTCAGGGGTGCTTGGAAC 59.309 55.000 0.00 0.00 0.00 3.62
2552 6940 1.062488 AGTCAGGGGTGCTTGGAACT 61.062 55.000 0.00 0.00 0.00 3.01
2553 6941 0.178990 GTCAGGGGTGCTTGGAACTT 60.179 55.000 0.00 0.00 0.00 2.66
2554 6942 0.555769 TCAGGGGTGCTTGGAACTTT 59.444 50.000 0.00 0.00 0.00 2.66
2555 6943 1.777878 TCAGGGGTGCTTGGAACTTTA 59.222 47.619 0.00 0.00 0.00 1.85
2556 6944 2.162681 CAGGGGTGCTTGGAACTTTAG 58.837 52.381 0.00 0.00 0.00 1.85
2557 6945 0.888619 GGGGTGCTTGGAACTTTAGC 59.111 55.000 0.00 0.00 35.50 3.09
2558 6946 0.888619 GGGTGCTTGGAACTTTAGCC 59.111 55.000 0.00 0.00 34.03 3.93
2559 6947 1.547901 GGGTGCTTGGAACTTTAGCCT 60.548 52.381 0.00 0.00 34.03 4.58
2560 6948 1.813178 GGTGCTTGGAACTTTAGCCTC 59.187 52.381 0.00 0.00 34.03 4.70
2561 6949 2.553247 GGTGCTTGGAACTTTAGCCTCT 60.553 50.000 0.00 0.00 34.03 3.69
2562 6950 3.307480 GGTGCTTGGAACTTTAGCCTCTA 60.307 47.826 0.00 0.00 34.03 2.43
2563 6951 4.324267 GTGCTTGGAACTTTAGCCTCTAA 58.676 43.478 0.00 0.00 34.03 2.10
2564 6952 4.760204 GTGCTTGGAACTTTAGCCTCTAAA 59.240 41.667 0.00 0.00 34.03 1.85
2565 6953 5.240844 GTGCTTGGAACTTTAGCCTCTAAAA 59.759 40.000 0.00 0.00 34.03 1.52
2566 6954 5.473504 TGCTTGGAACTTTAGCCTCTAAAAG 59.526 40.000 0.00 0.00 38.41 2.27
2567 6955 5.705905 GCTTGGAACTTTAGCCTCTAAAAGA 59.294 40.000 2.08 0.00 36.43 2.52
2568 6956 6.128145 GCTTGGAACTTTAGCCTCTAAAAGAG 60.128 42.308 2.08 0.00 41.96 2.85
2569 6957 6.681729 TGGAACTTTAGCCTCTAAAAGAGA 57.318 37.500 5.50 0.00 45.07 3.10
2570 6958 6.465084 TGGAACTTTAGCCTCTAAAAGAGAC 58.535 40.000 5.50 0.00 45.07 3.36
2571 6959 6.270231 TGGAACTTTAGCCTCTAAAAGAGACT 59.730 38.462 5.50 1.89 45.07 3.24
2572 6960 7.453752 TGGAACTTTAGCCTCTAAAAGAGACTA 59.546 37.037 5.50 0.91 45.07 2.59
2573 6961 8.479689 GGAACTTTAGCCTCTAAAAGAGACTAT 58.520 37.037 5.50 0.00 45.07 2.12
2574 6962 9.878667 GAACTTTAGCCTCTAAAAGAGACTATT 57.121 33.333 5.50 0.00 45.07 1.73
2581 6969 9.878667 AGCCTCTAAAAGAGACTATTTTTAGTC 57.121 33.333 12.70 5.24 45.07 2.59
2582 6970 9.654663 GCCTCTAAAAGAGACTATTTTTAGTCA 57.345 33.333 12.70 4.01 45.07 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.023735 GGTGGGGGCCCTTCAGAT 61.024 66.667 24.38 0.00 36.94 2.90
18 19 0.538746 GTTAACTGGTGTGGGTGGGG 60.539 60.000 0.00 0.00 0.00 4.96
76 77 2.894387 GCCTCGTCAGGAGCATGC 60.894 66.667 10.51 10.51 43.65 4.06
98 99 1.406219 CGCGACTCACAATGTCTCGG 61.406 60.000 0.00 0.00 38.49 4.63
105 106 0.249699 TGTTGGTCGCGACTCACAAT 60.250 50.000 35.50 0.00 0.00 2.71
106 107 0.460459 TTGTTGGTCGCGACTCACAA 60.460 50.000 33.55 33.55 33.76 3.33
107 108 1.142097 TTGTTGGTCGCGACTCACA 59.858 52.632 35.50 31.54 0.00 3.58
108 109 1.149361 TGTTGTTGGTCGCGACTCAC 61.149 55.000 35.50 29.64 0.00 3.51
116 117 0.179192 CATGGCGATGTTGTTGGTCG 60.179 55.000 0.00 0.00 38.34 4.79
124 125 3.201290 GAGATTGAGACATGGCGATGTT 58.799 45.455 15.94 6.07 43.22 2.71
140 141 1.241315 CCGTGCAAAACCCCGAGATT 61.241 55.000 0.00 0.00 0.00 2.40
147 148 1.890489 ACTAATTCCCGTGCAAAACCC 59.110 47.619 0.00 0.00 0.00 4.11
150 151 4.023021 GGTACAACTAATTCCCGTGCAAAA 60.023 41.667 0.00 0.00 0.00 2.44
180 181 3.218453 TCTTGACCCGCATGAAGAAAAA 58.782 40.909 0.00 0.00 0.00 1.94
181 182 2.857483 TCTTGACCCGCATGAAGAAAA 58.143 42.857 0.00 0.00 0.00 2.29
182 183 2.559698 TCTTGACCCGCATGAAGAAA 57.440 45.000 0.00 0.00 0.00 2.52
183 184 2.559698 TTCTTGACCCGCATGAAGAA 57.440 45.000 0.00 0.00 36.20 2.52
184 185 2.559698 TTTCTTGACCCGCATGAAGA 57.440 45.000 0.00 0.00 40.44 2.87
185 186 2.669391 GCTTTTCTTGACCCGCATGAAG 60.669 50.000 0.00 0.00 40.44 3.02
186 187 1.269448 GCTTTTCTTGACCCGCATGAA 59.731 47.619 0.00 0.00 38.46 2.57
198 199 8.920509 AATAGTAAAACACGTTTGCTTTTCTT 57.079 26.923 0.00 0.00 38.87 2.52
235 239 9.625747 TTACCAAGACAAATGAAGATATATGCA 57.374 29.630 0.00 0.00 0.00 3.96
254 258 6.780706 ACTTAGTTCACGTCATTTACCAAG 57.219 37.500 0.00 0.00 0.00 3.61
267 271 8.703378 ATAGGTATGGTAGGTACTTAGTTCAC 57.297 38.462 0.00 0.00 41.75 3.18
281 285 5.307196 GGAGCCTTGAGAAATAGGTATGGTA 59.693 44.000 0.00 0.00 33.91 3.25
282 286 4.103311 GGAGCCTTGAGAAATAGGTATGGT 59.897 45.833 0.00 0.00 33.91 3.55
284 288 4.039245 TCGGAGCCTTGAGAAATAGGTATG 59.961 45.833 0.00 0.00 33.91 2.39
305 309 5.065474 TGTTTGAAGGAGTAACCAACTTTCG 59.935 40.000 0.00 0.00 39.07 3.46
347 351 6.715347 AAAGCTTCATTTTCCTACACTTGT 57.285 33.333 0.00 0.00 0.00 3.16
351 366 6.978080 TGAACAAAAGCTTCATTTTCCTACAC 59.022 34.615 0.00 0.00 30.01 2.90
410 426 8.630037 GGAAAACATTTCTTCTCCTTTAACTCA 58.370 33.333 3.16 0.00 0.00 3.41
418 434 8.712228 ATACAAAGGAAAACATTTCTTCTCCT 57.288 30.769 3.16 0.00 34.74 3.69
436 458 8.348285 TGGGTTTCTCCTCAAATAATACAAAG 57.652 34.615 0.00 0.00 36.25 2.77
439 461 7.027874 ACTGGGTTTCTCCTCAAATAATACA 57.972 36.000 0.00 0.00 36.25 2.29
447 471 2.418669 AGGAACTGGGTTTCTCCTCAA 58.581 47.619 0.00 0.00 37.18 3.02
448 472 2.118403 AGGAACTGGGTTTCTCCTCA 57.882 50.000 0.00 0.00 37.18 3.86
451 475 3.055021 CCTAGAAGGAACTGGGTTTCTCC 60.055 52.174 0.00 0.00 40.86 3.71
453 477 3.599348 ACCTAGAAGGAACTGGGTTTCT 58.401 45.455 0.00 0.00 46.84 2.52
494 518 8.494016 ACAATAACATTAGCACCTAGTCTTTC 57.506 34.615 0.00 0.00 0.00 2.62
500 524 8.718102 ACAGTAACAATAACATTAGCACCTAG 57.282 34.615 0.00 0.00 0.00 3.02
538 562 7.346751 ACTTCAAGAAGGTGCTTAATTTCAA 57.653 32.000 13.83 0.00 42.53 2.69
540 564 6.382608 GGACTTCAAGAAGGTGCTTAATTTC 58.617 40.000 13.83 0.00 42.53 2.17
542 566 4.455877 CGGACTTCAAGAAGGTGCTTAATT 59.544 41.667 13.83 0.00 42.53 1.40
557 581 5.977489 TCAGAATAAACTCTCGGACTTCA 57.023 39.130 0.00 0.00 0.00 3.02
558 582 6.565234 TCATCAGAATAAACTCTCGGACTTC 58.435 40.000 0.00 0.00 0.00 3.01
562 586 6.775594 TTCTCATCAGAATAAACTCTCGGA 57.224 37.500 0.00 0.00 33.38 4.55
583 607 9.125026 AGGGAGTATTATGTTGTTGATCAATTC 57.875 33.333 12.12 6.04 38.38 2.17
586 610 7.054124 GGAGGGAGTATTATGTTGTTGATCAA 58.946 38.462 3.38 3.38 0.00 2.57
592 616 4.141779 GGACGGAGGGAGTATTATGTTGTT 60.142 45.833 0.00 0.00 0.00 2.83
596 620 2.158564 TCGGACGGAGGGAGTATTATGT 60.159 50.000 0.00 0.00 0.00 2.29
597 621 2.511659 TCGGACGGAGGGAGTATTATG 58.488 52.381 0.00 0.00 0.00 1.90
604 628 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
605 629 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
606 630 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
607 631 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
608 632 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
609 633 3.256383 TCTGACAAGTATTTTCGGACGGA 59.744 43.478 0.00 0.00 0.00 4.69
613 637 6.128282 GCATTTCTCTGACAAGTATTTTCGGA 60.128 38.462 0.00 0.00 0.00 4.55
615 639 6.602179 TGCATTTCTCTGACAAGTATTTTCG 58.398 36.000 0.00 0.00 0.00 3.46
617 641 9.013229 TGTATGCATTTCTCTGACAAGTATTTT 57.987 29.630 3.54 0.00 0.00 1.82
618 642 8.565896 TGTATGCATTTCTCTGACAAGTATTT 57.434 30.769 3.54 0.00 0.00 1.40
619 643 8.565896 TTGTATGCATTTCTCTGACAAGTATT 57.434 30.769 3.54 0.00 0.00 1.89
621 645 7.977789 TTTGTATGCATTTCTCTGACAAGTA 57.022 32.000 3.54 0.00 0.00 2.24
622 646 6.882610 TTTGTATGCATTTCTCTGACAAGT 57.117 33.333 3.54 0.00 0.00 3.16
623 647 6.750501 CCATTTGTATGCATTTCTCTGACAAG 59.249 38.462 3.54 0.00 0.00 3.16
624 648 6.433716 TCCATTTGTATGCATTTCTCTGACAA 59.566 34.615 3.54 4.54 0.00 3.18
625 649 5.945191 TCCATTTGTATGCATTTCTCTGACA 59.055 36.000 3.54 0.00 0.00 3.58
628 652 6.802608 ACATCCATTTGTATGCATTTCTCTG 58.197 36.000 3.54 0.00 0.00 3.35
629 653 8.701908 ATACATCCATTTGTATGCATTTCTCT 57.298 30.769 3.54 0.00 40.44 3.10
636 660 9.407380 AGTTCTAAATACATCCATTTGTATGCA 57.593 29.630 0.00 0.00 40.94 3.96
666 690 7.662258 CGGAGGAATGGATATATCTAGACGTAT 59.338 40.741 12.42 0.00 0.00 3.06
667 691 6.990939 CGGAGGAATGGATATATCTAGACGTA 59.009 42.308 12.42 0.00 0.00 3.57
668 692 5.823570 CGGAGGAATGGATATATCTAGACGT 59.176 44.000 12.42 6.48 0.00 4.34
669 693 6.056236 TCGGAGGAATGGATATATCTAGACG 58.944 44.000 12.42 6.60 0.00 4.18
670 694 9.575868 TTATCGGAGGAATGGATATATCTAGAC 57.424 37.037 12.42 5.03 0.00 2.59
671 695 9.800572 CTTATCGGAGGAATGGATATATCTAGA 57.199 37.037 12.42 0.00 0.00 2.43
672 696 9.581289 ACTTATCGGAGGAATGGATATATCTAG 57.419 37.037 12.42 0.00 0.00 2.43
678 702 8.198109 CGAAATACTTATCGGAGGAATGGATAT 58.802 37.037 0.00 0.00 35.49 1.63
679 703 7.544622 CGAAATACTTATCGGAGGAATGGATA 58.455 38.462 0.00 0.00 35.49 2.59
680 704 6.398918 CGAAATACTTATCGGAGGAATGGAT 58.601 40.000 0.00 0.00 35.49 3.41
681 705 5.779922 CGAAATACTTATCGGAGGAATGGA 58.220 41.667 0.00 0.00 35.49 3.41
691 715 3.554337 CCTCCACCCCGAAATACTTATCG 60.554 52.174 0.00 0.00 38.74 2.92
692 716 3.244457 CCCTCCACCCCGAAATACTTATC 60.244 52.174 0.00 0.00 0.00 1.75
693 717 2.709397 CCCTCCACCCCGAAATACTTAT 59.291 50.000 0.00 0.00 0.00 1.73
694 718 2.121129 CCCTCCACCCCGAAATACTTA 58.879 52.381 0.00 0.00 0.00 2.24
695 719 0.916809 CCCTCCACCCCGAAATACTT 59.083 55.000 0.00 0.00 0.00 2.24
696 720 0.043637 TCCCTCCACCCCGAAATACT 59.956 55.000 0.00 0.00 0.00 2.12
697 721 0.468648 CTCCCTCCACCCCGAAATAC 59.531 60.000 0.00 0.00 0.00 1.89
698 722 0.043637 ACTCCCTCCACCCCGAAATA 59.956 55.000 0.00 0.00 0.00 1.40
699 723 0.043637 TACTCCCTCCACCCCGAAAT 59.956 55.000 0.00 0.00 0.00 2.17
700 724 0.043637 ATACTCCCTCCACCCCGAAA 59.956 55.000 0.00 0.00 0.00 3.46
701 725 0.043637 AATACTCCCTCCACCCCGAA 59.956 55.000 0.00 0.00 0.00 4.30
702 726 0.689745 CAATACTCCCTCCACCCCGA 60.690 60.000 0.00 0.00 0.00 5.14
703 727 0.981277 ACAATACTCCCTCCACCCCG 60.981 60.000 0.00 0.00 0.00 5.73
704 728 2.185663 TACAATACTCCCTCCACCCC 57.814 55.000 0.00 0.00 0.00 4.95
705 729 4.165372 TGAAATACAATACTCCCTCCACCC 59.835 45.833 0.00 0.00 0.00 4.61
706 730 5.130477 TCTGAAATACAATACTCCCTCCACC 59.870 44.000 0.00 0.00 0.00 4.61
707 731 6.127026 ACTCTGAAATACAATACTCCCTCCAC 60.127 42.308 0.00 0.00 0.00 4.02
708 732 5.964477 ACTCTGAAATACAATACTCCCTCCA 59.036 40.000 0.00 0.00 0.00 3.86
709 733 6.487299 ACTCTGAAATACAATACTCCCTCC 57.513 41.667 0.00 0.00 0.00 4.30
710 734 8.261522 AGAAACTCTGAAATACAATACTCCCTC 58.738 37.037 0.00 0.00 0.00 4.30
711 735 8.152023 AGAAACTCTGAAATACAATACTCCCT 57.848 34.615 0.00 0.00 0.00 4.20
712 736 8.794335 AAGAAACTCTGAAATACAATACTCCC 57.206 34.615 0.00 0.00 0.00 4.30
719 743 9.261180 CAGTCACTAAGAAACTCTGAAATACAA 57.739 33.333 0.00 0.00 0.00 2.41
737 764 9.529823 CCTGGTATAATAGGATTACAGTCACTA 57.470 37.037 0.00 0.00 36.11 2.74
739 766 7.453752 TCCCTGGTATAATAGGATTACAGTCAC 59.546 40.741 5.33 0.00 36.11 3.67
800 833 0.968405 TGCACTGCTTGGAAATTCCC 59.032 50.000 9.87 0.00 35.03 3.97
826 859 5.437289 TGCTTCTTGTCCAATTGTGTAAG 57.563 39.130 4.43 5.71 0.00 2.34
869 902 4.078639 AGTGACAAGAAAAGGGAGACAG 57.921 45.455 0.00 0.00 0.00 3.51
893 927 3.387374 AGAGGTTATGTGCTGAGATCAGG 59.613 47.826 11.63 0.00 43.94 3.86
914 986 5.407407 AAAGGATGGAGGCGTATATGTAG 57.593 43.478 0.00 0.00 0.00 2.74
917 989 6.644347 AGATTAAAGGATGGAGGCGTATATG 58.356 40.000 0.00 0.00 0.00 1.78
1089 1176 3.708220 CTCCTTCAGCGAGCCGTCC 62.708 68.421 0.00 0.00 0.00 4.79
1716 6088 5.711976 CCTTTCCCAGAATACATGTTCTTGT 59.288 40.000 2.30 0.00 36.33 3.16
1717 6089 5.126061 CCCTTTCCCAGAATACATGTTCTTG 59.874 44.000 2.30 0.00 36.33 3.02
1780 6152 8.616076 GCATTCTTGTAGTTTTGCATCTAGTAT 58.384 33.333 0.00 0.00 0.00 2.12
1781 6153 7.606073 TGCATTCTTGTAGTTTTGCATCTAGTA 59.394 33.333 0.00 0.00 35.36 1.82
1783 6155 6.845302 TGCATTCTTGTAGTTTTGCATCTAG 58.155 36.000 0.00 0.00 35.36 2.43
1786 6161 6.768029 TTTGCATTCTTGTAGTTTTGCATC 57.232 33.333 0.00 0.00 39.56 3.91
1793 6168 6.449635 TCAGTGTTTTGCATTCTTGTAGTT 57.550 33.333 0.00 0.00 0.00 2.24
1798 6173 6.477688 ACAAGAATCAGTGTTTTGCATTCTTG 59.522 34.615 25.95 25.95 46.00 3.02
1814 6189 7.862372 GCTGAAAATCTAACAACACAAGAATCA 59.138 33.333 0.00 0.00 0.00 2.57
1823 6198 7.229306 ACAGAATCTGCTGAAAATCTAACAACA 59.771 33.333 10.62 0.00 39.20 3.33
1824 6199 7.588512 ACAGAATCTGCTGAAAATCTAACAAC 58.411 34.615 10.62 0.00 39.20 3.32
1831 6206 8.530269 AAATTGAACAGAATCTGCTGAAAATC 57.470 30.769 10.62 0.00 39.20 2.17
1852 6227 6.260936 CCTGAGGATTAGCGAATGTGTAAATT 59.739 38.462 0.00 0.00 0.00 1.82
1853 6228 5.760253 CCTGAGGATTAGCGAATGTGTAAAT 59.240 40.000 0.00 0.00 0.00 1.40
1859 6234 1.486310 TGCCTGAGGATTAGCGAATGT 59.514 47.619 0.65 0.00 0.00 2.71
1904 6279 7.389053 GCTCTGTTGTTCTCCCTATTAATATGG 59.611 40.741 9.84 9.84 0.00 2.74
1912 6287 1.134670 GCGCTCTGTTGTTCTCCCTAT 60.135 52.381 0.00 0.00 0.00 2.57
1920 6295 3.044305 GCTCGGCGCTCTGTTGTT 61.044 61.111 7.64 0.00 35.14 2.83
1956 6331 2.659897 GCGCTCGCCATCGAATCT 60.660 61.111 0.00 0.00 44.98 2.40
1971 6346 1.133253 CACTTGTTGATGGCTCGCG 59.867 57.895 0.00 0.00 0.00 5.87
1977 6352 0.251297 TGGCTCCCACTTGTTGATGG 60.251 55.000 0.00 0.00 35.59 3.51
2023 6398 2.391724 ATCGCTGGTTCACACCCGTT 62.392 55.000 0.00 0.00 43.49 4.44
2073 6448 0.538516 ACAGTCCAGTCTCACTCGCT 60.539 55.000 0.00 0.00 0.00 4.93
2124 6501 2.726351 CCCTCTCTCCCCGTTCTGC 61.726 68.421 0.00 0.00 0.00 4.26
2285 6673 4.261801 ACTAAAACGTATCCAAGCATGCT 58.738 39.130 16.30 16.30 0.00 3.79
2286 6674 4.495844 GGACTAAAACGTATCCAAGCATGC 60.496 45.833 10.51 10.51 0.00 4.06
2287 6675 4.634004 TGGACTAAAACGTATCCAAGCATG 59.366 41.667 0.00 0.00 38.30 4.06
2288 6676 4.839121 TGGACTAAAACGTATCCAAGCAT 58.161 39.130 0.00 0.00 38.30 3.79
2289 6677 4.274602 TGGACTAAAACGTATCCAAGCA 57.725 40.909 0.00 0.00 38.30 3.91
2290 6678 4.873827 TCATGGACTAAAACGTATCCAAGC 59.126 41.667 8.81 0.00 44.25 4.01
2291 6679 6.106673 AGTCATGGACTAAAACGTATCCAAG 58.893 40.000 8.81 5.84 44.25 3.61
2292 6680 6.045072 AGTCATGGACTAAAACGTATCCAA 57.955 37.500 8.81 0.00 44.25 3.53
2293 6681 5.670792 AGTCATGGACTAAAACGTATCCA 57.329 39.130 7.58 7.58 41.51 3.41
2304 6692 6.154021 GTCCCACTACTTTTAGTCATGGACTA 59.846 42.308 2.10 2.10 41.51 2.59
2305 6693 5.046520 GTCCCACTACTTTTAGTCATGGACT 60.047 44.000 4.13 4.13 45.54 3.85
2306 6694 5.046520 AGTCCCACTACTTTTAGTCATGGAC 60.047 44.000 12.57 12.57 42.48 4.02
2307 6695 5.091552 AGTCCCACTACTTTTAGTCATGGA 58.908 41.667 9.65 0.00 36.31 3.41
2308 6696 5.422214 AGTCCCACTACTTTTAGTCATGG 57.578 43.478 0.00 0.00 36.31 3.66
2309 6697 8.718734 GTTTTAGTCCCACTACTTTTAGTCATG 58.281 37.037 0.00 0.00 36.31 3.07
2310 6698 8.657712 AGTTTTAGTCCCACTACTTTTAGTCAT 58.342 33.333 0.00 0.00 36.31 3.06
2311 6699 8.026396 AGTTTTAGTCCCACTACTTTTAGTCA 57.974 34.615 0.00 0.00 36.31 3.41
2312 6700 8.771766 CAAGTTTTAGTCCCACTACTTTTAGTC 58.228 37.037 0.00 0.00 36.31 2.59
2313 6701 7.228108 GCAAGTTTTAGTCCCACTACTTTTAGT 59.772 37.037 0.00 0.00 39.30 2.24
2314 6702 7.444487 AGCAAGTTTTAGTCCCACTACTTTTAG 59.556 37.037 0.00 0.00 28.93 1.85
2315 6703 7.284820 AGCAAGTTTTAGTCCCACTACTTTTA 58.715 34.615 0.00 0.00 28.93 1.52
2316 6704 6.127101 AGCAAGTTTTAGTCCCACTACTTTT 58.873 36.000 0.00 0.00 28.93 2.27
2317 6705 5.691896 AGCAAGTTTTAGTCCCACTACTTT 58.308 37.500 0.00 0.00 28.93 2.66
2318 6706 5.306114 AGCAAGTTTTAGTCCCACTACTT 57.694 39.130 0.00 0.00 28.93 2.24
2319 6707 4.976540 AGCAAGTTTTAGTCCCACTACT 57.023 40.909 0.00 0.00 28.93 2.57
2320 6708 5.791666 ACTAGCAAGTTTTAGTCCCACTAC 58.208 41.667 0.00 0.00 27.15 2.73
2321 6709 5.778750 AGACTAGCAAGTTTTAGTCCCACTA 59.221 40.000 15.72 0.00 44.32 2.74
2322 6710 4.593634 AGACTAGCAAGTTTTAGTCCCACT 59.406 41.667 15.72 1.62 44.32 4.00
2323 6711 4.895961 AGACTAGCAAGTTTTAGTCCCAC 58.104 43.478 15.72 0.00 44.32 4.61
2324 6712 4.591498 TGAGACTAGCAAGTTTTAGTCCCA 59.409 41.667 15.72 10.61 44.32 4.37
2325 6713 4.930405 GTGAGACTAGCAAGTTTTAGTCCC 59.070 45.833 15.72 8.76 44.32 4.46
2326 6714 4.930405 GGTGAGACTAGCAAGTTTTAGTCC 59.070 45.833 15.72 10.59 44.32 3.85
2327 6715 4.930405 GGGTGAGACTAGCAAGTTTTAGTC 59.070 45.833 13.08 13.08 43.83 2.59
2328 6716 4.347000 TGGGTGAGACTAGCAAGTTTTAGT 59.653 41.667 0.00 0.00 35.56 2.24
2329 6717 4.894784 TGGGTGAGACTAGCAAGTTTTAG 58.105 43.478 0.00 0.00 35.56 1.85
2330 6718 4.967084 TGGGTGAGACTAGCAAGTTTTA 57.033 40.909 0.00 0.00 35.56 1.52
2331 6719 3.857157 TGGGTGAGACTAGCAAGTTTT 57.143 42.857 0.00 0.00 35.56 2.43
2332 6720 3.679389 CATGGGTGAGACTAGCAAGTTT 58.321 45.455 0.00 0.00 35.56 2.66
2333 6721 2.616510 GCATGGGTGAGACTAGCAAGTT 60.617 50.000 0.00 0.00 35.56 2.66
2334 6722 1.065854 GCATGGGTGAGACTAGCAAGT 60.066 52.381 0.00 0.00 39.21 3.16
2335 6723 1.209019 AGCATGGGTGAGACTAGCAAG 59.791 52.381 0.00 0.00 0.00 4.01
2336 6724 1.279496 AGCATGGGTGAGACTAGCAA 58.721 50.000 0.00 0.00 0.00 3.91
2337 6725 1.065926 CAAGCATGGGTGAGACTAGCA 60.066 52.381 0.00 0.00 0.00 3.49
2338 6726 1.661341 CAAGCATGGGTGAGACTAGC 58.339 55.000 0.00 0.00 0.00 3.42
2339 6727 2.322355 CCAAGCATGGGTGAGACTAG 57.678 55.000 0.00 0.00 43.51 2.57
2350 6738 8.469200 TCTTTTTAGTATTTGGATCCAAGCATG 58.531 33.333 25.69 10.04 37.24 4.06
2351 6739 8.470002 GTCTTTTTAGTATTTGGATCCAAGCAT 58.530 33.333 25.69 19.69 37.24 3.79
2352 6740 7.669722 AGTCTTTTTAGTATTTGGATCCAAGCA 59.330 33.333 25.69 14.00 37.24 3.91
2353 6741 8.056407 AGTCTTTTTAGTATTTGGATCCAAGC 57.944 34.615 25.69 19.18 37.24 4.01
2394 6782 4.078980 AGGGTTTGGAGGATAATCAATGCT 60.079 41.667 0.00 0.00 39.30 3.79
2395 6783 4.218312 AGGGTTTGGAGGATAATCAATGC 58.782 43.478 0.00 0.00 0.00 3.56
2396 6784 4.829492 GGAGGGTTTGGAGGATAATCAATG 59.171 45.833 0.00 0.00 0.00 2.82
2397 6785 4.482025 TGGAGGGTTTGGAGGATAATCAAT 59.518 41.667 0.00 0.00 0.00 2.57
2398 6786 3.855599 TGGAGGGTTTGGAGGATAATCAA 59.144 43.478 0.00 0.00 0.00 2.57
2399 6787 3.469859 TGGAGGGTTTGGAGGATAATCA 58.530 45.455 0.00 0.00 0.00 2.57
2400 6788 4.519906 TTGGAGGGTTTGGAGGATAATC 57.480 45.455 0.00 0.00 0.00 1.75
2401 6789 4.140924 GGATTGGAGGGTTTGGAGGATAAT 60.141 45.833 0.00 0.00 0.00 1.28
2402 6790 3.204382 GGATTGGAGGGTTTGGAGGATAA 59.796 47.826 0.00 0.00 0.00 1.75
2403 6791 2.783510 GGATTGGAGGGTTTGGAGGATA 59.216 50.000 0.00 0.00 0.00 2.59
2404 6792 1.570979 GGATTGGAGGGTTTGGAGGAT 59.429 52.381 0.00 0.00 0.00 3.24
2405 6793 0.999712 GGATTGGAGGGTTTGGAGGA 59.000 55.000 0.00 0.00 0.00 3.71
2406 6794 0.704076 TGGATTGGAGGGTTTGGAGG 59.296 55.000 0.00 0.00 0.00 4.30
2407 6795 1.635487 TCTGGATTGGAGGGTTTGGAG 59.365 52.381 0.00 0.00 0.00 3.86
2408 6796 1.753903 TCTGGATTGGAGGGTTTGGA 58.246 50.000 0.00 0.00 0.00 3.53
2409 6797 2.171003 GTTCTGGATTGGAGGGTTTGG 58.829 52.381 0.00 0.00 0.00 3.28
2410 6798 3.160679 AGTTCTGGATTGGAGGGTTTG 57.839 47.619 0.00 0.00 0.00 2.93
2411 6799 4.263949 CCTTAGTTCTGGATTGGAGGGTTT 60.264 45.833 0.00 0.00 0.00 3.27
2412 6800 3.267031 CCTTAGTTCTGGATTGGAGGGTT 59.733 47.826 0.00 0.00 0.00 4.11
2413 6801 2.846827 CCTTAGTTCTGGATTGGAGGGT 59.153 50.000 0.00 0.00 0.00 4.34
2414 6802 3.115390 TCCTTAGTTCTGGATTGGAGGG 58.885 50.000 0.00 0.00 0.00 4.30
2415 6803 4.033709 TCTCCTTAGTTCTGGATTGGAGG 58.966 47.826 0.00 0.00 39.80 4.30
2416 6804 4.100808 CCTCTCCTTAGTTCTGGATTGGAG 59.899 50.000 0.00 0.00 40.47 3.86
2417 6805 4.033709 CCTCTCCTTAGTTCTGGATTGGA 58.966 47.826 0.00 0.00 31.05 3.53
2418 6806 4.033709 TCCTCTCCTTAGTTCTGGATTGG 58.966 47.826 0.00 0.00 0.00 3.16
2419 6807 5.683876 TTCCTCTCCTTAGTTCTGGATTG 57.316 43.478 0.00 0.00 0.00 2.67
2420 6808 6.899892 AATTCCTCTCCTTAGTTCTGGATT 57.100 37.500 0.00 0.00 0.00 3.01
2421 6809 7.996758 TTAATTCCTCTCCTTAGTTCTGGAT 57.003 36.000 0.00 0.00 0.00 3.41
2422 6810 7.808279 TTTAATTCCTCTCCTTAGTTCTGGA 57.192 36.000 0.00 0.00 0.00 3.86
2423 6811 8.267894 TCATTTAATTCCTCTCCTTAGTTCTGG 58.732 37.037 0.00 0.00 0.00 3.86
2424 6812 9.323985 CTCATTTAATTCCTCTCCTTAGTTCTG 57.676 37.037 0.00 0.00 0.00 3.02
2425 6813 8.490311 CCTCATTTAATTCCTCTCCTTAGTTCT 58.510 37.037 0.00 0.00 0.00 3.01
2426 6814 8.487028 TCCTCATTTAATTCCTCTCCTTAGTTC 58.513 37.037 0.00 0.00 0.00 3.01
2427 6815 8.393959 TCCTCATTTAATTCCTCTCCTTAGTT 57.606 34.615 0.00 0.00 0.00 2.24
2428 6816 7.846823 TCTCCTCATTTAATTCCTCTCCTTAGT 59.153 37.037 0.00 0.00 0.00 2.24
2429 6817 8.256356 TCTCCTCATTTAATTCCTCTCCTTAG 57.744 38.462 0.00 0.00 0.00 2.18
2430 6818 8.068110 TCTCTCCTCATTTAATTCCTCTCCTTA 58.932 37.037 0.00 0.00 0.00 2.69
2431 6819 6.905776 TCTCTCCTCATTTAATTCCTCTCCTT 59.094 38.462 0.00 0.00 0.00 3.36
2432 6820 6.448202 TCTCTCCTCATTTAATTCCTCTCCT 58.552 40.000 0.00 0.00 0.00 3.69
2433 6821 6.553100 TCTCTCTCCTCATTTAATTCCTCTCC 59.447 42.308 0.00 0.00 0.00 3.71
2434 6822 7.505585 TCTCTCTCTCCTCATTTAATTCCTCTC 59.494 40.741 0.00 0.00 0.00 3.20
2435 6823 7.361438 TCTCTCTCTCCTCATTTAATTCCTCT 58.639 38.462 0.00 0.00 0.00 3.69
2436 6824 7.595819 TCTCTCTCTCCTCATTTAATTCCTC 57.404 40.000 0.00 0.00 0.00 3.71
2437 6825 6.041979 GCTCTCTCTCTCCTCATTTAATTCCT 59.958 42.308 0.00 0.00 0.00 3.36
2438 6826 6.041979 AGCTCTCTCTCTCCTCATTTAATTCC 59.958 42.308 0.00 0.00 0.00 3.01
2439 6827 7.054491 AGCTCTCTCTCTCCTCATTTAATTC 57.946 40.000 0.00 0.00 0.00 2.17
2440 6828 8.546083 TTAGCTCTCTCTCTCCTCATTTAATT 57.454 34.615 0.00 0.00 0.00 1.40
2441 6829 8.725606 ATTAGCTCTCTCTCTCCTCATTTAAT 57.274 34.615 0.00 0.00 0.00 1.40
2442 6830 9.073475 GTATTAGCTCTCTCTCTCCTCATTTAA 57.927 37.037 0.00 0.00 0.00 1.52
2443 6831 8.221251 TGTATTAGCTCTCTCTCTCCTCATTTA 58.779 37.037 0.00 0.00 0.00 1.40
2444 6832 7.066142 TGTATTAGCTCTCTCTCTCCTCATTT 58.934 38.462 0.00 0.00 0.00 2.32
2445 6833 6.609876 TGTATTAGCTCTCTCTCTCCTCATT 58.390 40.000 0.00 0.00 0.00 2.57
2446 6834 6.199557 TGTATTAGCTCTCTCTCTCCTCAT 57.800 41.667 0.00 0.00 0.00 2.90
2447 6835 5.638530 TGTATTAGCTCTCTCTCTCCTCA 57.361 43.478 0.00 0.00 0.00 3.86
2448 6836 8.807948 AATATGTATTAGCTCTCTCTCTCCTC 57.192 38.462 0.00 0.00 0.00 3.71
2449 6837 9.600432 AAAATATGTATTAGCTCTCTCTCTCCT 57.400 33.333 0.00 0.00 0.00 3.69
2493 6881 9.654663 GACTAGTCTTGAGGCTAAAATCTTTTA 57.345 33.333 15.91 0.00 0.00 1.52
2494 6882 7.608376 GGACTAGTCTTGAGGCTAAAATCTTTT 59.392 37.037 21.88 0.00 0.00 2.27
2495 6883 7.037945 AGGACTAGTCTTGAGGCTAAAATCTTT 60.038 37.037 21.88 0.00 0.00 2.52
2496 6884 6.442244 AGGACTAGTCTTGAGGCTAAAATCTT 59.558 38.462 21.88 0.00 0.00 2.40
2497 6885 5.961421 AGGACTAGTCTTGAGGCTAAAATCT 59.039 40.000 21.88 3.06 0.00 2.40
2498 6886 6.228616 AGGACTAGTCTTGAGGCTAAAATC 57.771 41.667 21.88 0.73 0.00 2.17
2499 6887 6.898521 ACTAGGACTAGTCTTGAGGCTAAAAT 59.101 38.462 21.88 1.21 42.30 1.82
2500 6888 6.254522 ACTAGGACTAGTCTTGAGGCTAAAA 58.745 40.000 21.88 0.00 42.30 1.52
2501 6889 5.828871 ACTAGGACTAGTCTTGAGGCTAAA 58.171 41.667 21.88 0.00 42.30 1.85
2502 6890 5.453866 ACTAGGACTAGTCTTGAGGCTAA 57.546 43.478 21.88 0.00 42.30 3.09
2514 6902 6.990349 CCTGACTAAAGAGAGACTAGGACTAG 59.010 46.154 4.86 4.86 39.04 2.57
2515 6903 6.126710 CCCTGACTAAAGAGAGACTAGGACTA 60.127 46.154 0.00 0.00 0.00 2.59
2516 6904 5.339695 CCCTGACTAAAGAGAGACTAGGACT 60.340 48.000 0.00 0.00 0.00 3.85
2517 6905 4.885325 CCCTGACTAAAGAGAGACTAGGAC 59.115 50.000 0.00 0.00 0.00 3.85
2518 6906 4.079672 CCCCTGACTAAAGAGAGACTAGGA 60.080 50.000 0.00 0.00 0.00 2.94
2519 6907 4.211920 CCCCTGACTAAAGAGAGACTAGG 58.788 52.174 0.00 0.00 0.00 3.02
2520 6908 4.642885 CACCCCTGACTAAAGAGAGACTAG 59.357 50.000 0.00 0.00 0.00 2.57
2521 6909 4.601084 CACCCCTGACTAAAGAGAGACTA 58.399 47.826 0.00 0.00 0.00 2.59
2522 6910 3.436243 CACCCCTGACTAAAGAGAGACT 58.564 50.000 0.00 0.00 0.00 3.24
2523 6911 2.093921 GCACCCCTGACTAAAGAGAGAC 60.094 54.545 0.00 0.00 0.00 3.36
2524 6912 2.180276 GCACCCCTGACTAAAGAGAGA 58.820 52.381 0.00 0.00 0.00 3.10
2525 6913 2.183679 AGCACCCCTGACTAAAGAGAG 58.816 52.381 0.00 0.00 0.00 3.20
2526 6914 2.303022 CAAGCACCCCTGACTAAAGAGA 59.697 50.000 0.00 0.00 0.00 3.10
2527 6915 2.616510 CCAAGCACCCCTGACTAAAGAG 60.617 54.545 0.00 0.00 0.00 2.85
2528 6916 1.351017 CCAAGCACCCCTGACTAAAGA 59.649 52.381 0.00 0.00 0.00 2.52
2529 6917 1.351017 TCCAAGCACCCCTGACTAAAG 59.649 52.381 0.00 0.00 0.00 1.85
2530 6918 1.440618 TCCAAGCACCCCTGACTAAA 58.559 50.000 0.00 0.00 0.00 1.85
2531 6919 1.073284 GTTCCAAGCACCCCTGACTAA 59.927 52.381 0.00 0.00 0.00 2.24
2532 6920 0.690762 GTTCCAAGCACCCCTGACTA 59.309 55.000 0.00 0.00 0.00 2.59
2533 6921 1.062488 AGTTCCAAGCACCCCTGACT 61.062 55.000 0.00 0.00 0.00 3.41
2534 6922 0.178990 AAGTTCCAAGCACCCCTGAC 60.179 55.000 0.00 0.00 0.00 3.51
2535 6923 0.555769 AAAGTTCCAAGCACCCCTGA 59.444 50.000 0.00 0.00 0.00 3.86
2536 6924 2.162681 CTAAAGTTCCAAGCACCCCTG 58.837 52.381 0.00 0.00 0.00 4.45
2537 6925 1.547901 GCTAAAGTTCCAAGCACCCCT 60.548 52.381 0.00 0.00 36.26 4.79
2538 6926 0.888619 GCTAAAGTTCCAAGCACCCC 59.111 55.000 0.00 0.00 36.26 4.95
2539 6927 0.888619 GGCTAAAGTTCCAAGCACCC 59.111 55.000 7.02 0.00 38.01 4.61
2540 6928 1.813178 GAGGCTAAAGTTCCAAGCACC 59.187 52.381 0.00 0.00 38.01 5.01
2541 6929 2.784347 AGAGGCTAAAGTTCCAAGCAC 58.216 47.619 0.00 2.09 38.01 4.40
2542 6930 4.634012 TTAGAGGCTAAAGTTCCAAGCA 57.366 40.909 0.00 0.00 38.01 3.91
2543 6931 5.705905 TCTTTTAGAGGCTAAAGTTCCAAGC 59.294 40.000 7.84 0.00 33.97 4.01
2544 6932 7.118535 GTCTCTTTTAGAGGCTAAAGTTCCAAG 59.881 40.741 7.84 0.00 43.38 3.61
2545 6933 6.935208 GTCTCTTTTAGAGGCTAAAGTTCCAA 59.065 38.462 7.84 0.00 43.38 3.53
2546 6934 6.465084 GTCTCTTTTAGAGGCTAAAGTTCCA 58.535 40.000 7.84 0.00 43.38 3.53
2547 6935 6.971527 GTCTCTTTTAGAGGCTAAAGTTCC 57.028 41.667 7.84 0.00 43.38 3.62
2556 6944 9.654663 TGACTAAAAATAGTCTCTTTTAGAGGC 57.345 33.333 22.30 14.20 46.94 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.