Multiple sequence alignment - TraesCS6B01G195800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G195800 chr6B 100.000 4557 0 0 1 4557 231686677 231682121 0.000000e+00 8416
1 TraesCS6B01G195800 chr6D 95.232 1447 52 11 823 2262 133229581 133228145 0.000000e+00 2274
2 TraesCS6B01G195800 chr6D 95.136 1439 50 11 2257 3683 133228093 133226663 0.000000e+00 2252
3 TraesCS6B01G195800 chr6D 89.581 835 24 23 3755 4557 133226638 133225835 0.000000e+00 1002
4 TraesCS6B01G195800 chr6A 93.758 1506 63 14 2257 3746 172133221 172131731 0.000000e+00 2231
5 TraesCS6B01G195800 chr6A 91.166 1449 81 23 823 2262 172134685 172133275 0.000000e+00 1923
6 TraesCS6B01G195800 chr6A 82.790 552 46 24 3795 4325 172131736 172131213 8.990000e-122 448
7 TraesCS6B01G195800 chr6A 86.911 191 7 6 4365 4555 172130867 172130695 1.000000e-46 198


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G195800 chr6B 231682121 231686677 4556 True 8416.000000 8416 100.000000 1 4557 1 chr6B.!!$R1 4556
1 TraesCS6B01G195800 chr6D 133225835 133229581 3746 True 1842.666667 2274 93.316333 823 4557 3 chr6D.!!$R1 3734
2 TraesCS6B01G195800 chr6A 172130695 172134685 3990 True 1200.000000 2231 88.656250 823 4555 4 chr6A.!!$R1 3732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
767 768 0.041386 AGGGAAGGAACCTCGCTACT 59.959 55.000 0.00 0.00 31.01 2.57 F
768 769 0.175989 GGGAAGGAACCTCGCTACTG 59.824 60.000 0.00 0.00 0.00 2.74 F
769 770 0.175989 GGAAGGAACCTCGCTACTGG 59.824 60.000 0.00 0.00 0.00 4.00 F
863 864 0.255033 GATCTGGGCCCGTACCTTTT 59.745 55.000 19.37 0.00 0.00 2.27 F
864 865 0.702316 ATCTGGGCCCGTACCTTTTT 59.298 50.000 19.37 0.00 0.00 1.94 F
1856 1874 1.003718 GGTTCCTGGAGTCCAACCG 60.004 63.158 14.17 1.23 30.80 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1664 1682 0.960364 ACCGCTCATCGTGCCAAAAT 60.960 50.000 0.00 0.00 36.19 1.82 R
2534 2611 2.020832 CGAATTTGCGTACGGGCG 59.979 61.111 18.39 0.00 35.06 6.13 R
2646 2723 2.426024 CCTCCTGCCACATCAAATTCAG 59.574 50.000 0.00 0.00 0.00 3.02 R
2690 2767 2.694616 ACCCTAGGTTTTGCCAACAT 57.305 45.000 8.29 0.00 40.61 2.71 R
3003 3080 9.280174 ACGGAAGTAATCTGAATTTGTTCTTTA 57.720 29.630 0.00 0.00 46.88 1.85 R
3655 3749 1.060553 CGGACCACAACAATCGATTCG 59.939 52.381 7.92 6.84 0.00 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 6.707440 ACAGTCAAACAAATGTATGTTCCA 57.293 33.333 0.00 0.00 42.49 3.53
39 40 7.288810 ACAGTCAAACAAATGTATGTTCCAT 57.711 32.000 0.00 0.00 42.49 3.41
40 41 7.725251 ACAGTCAAACAAATGTATGTTCCATT 58.275 30.769 0.00 0.00 42.49 3.16
41 42 8.203485 ACAGTCAAACAAATGTATGTTCCATTT 58.797 29.630 0.00 0.00 42.49 2.32
42 43 9.044150 CAGTCAAACAAATGTATGTTCCATTTT 57.956 29.630 0.00 0.00 42.49 1.82
72 73 7.951530 ATGTTTCATGAGTTTCCAAAATGAC 57.048 32.000 0.00 0.00 0.00 3.06
73 74 6.871844 TGTTTCATGAGTTTCCAAAATGACA 58.128 32.000 0.00 0.00 0.00 3.58
74 75 7.499292 TGTTTCATGAGTTTCCAAAATGACAT 58.501 30.769 0.00 0.00 0.00 3.06
75 76 7.986320 TGTTTCATGAGTTTCCAAAATGACATT 59.014 29.630 0.00 0.00 0.00 2.71
76 77 7.949903 TTCATGAGTTTCCAAAATGACATTG 57.050 32.000 0.34 0.00 0.00 2.82
77 78 7.053316 TCATGAGTTTCCAAAATGACATTGT 57.947 32.000 0.34 0.00 0.00 2.71
78 79 7.499292 TCATGAGTTTCCAAAATGACATTGTT 58.501 30.769 0.34 0.00 0.00 2.83
79 80 7.438757 TCATGAGTTTCCAAAATGACATTGTTG 59.561 33.333 0.34 8.37 0.00 3.33
80 81 6.871844 TGAGTTTCCAAAATGACATTGTTGA 58.128 32.000 17.43 6.41 0.00 3.18
81 82 7.326454 TGAGTTTCCAAAATGACATTGTTGAA 58.674 30.769 17.43 10.92 0.00 2.69
82 83 7.821359 TGAGTTTCCAAAATGACATTGTTGAAA 59.179 29.630 11.69 11.69 0.00 2.69
83 84 8.558973 AGTTTCCAAAATGACATTGTTGAAAA 57.441 26.923 15.62 9.76 0.00 2.29
84 85 9.007901 AGTTTCCAAAATGACATTGTTGAAAAA 57.992 25.926 15.62 13.83 0.00 1.94
85 86 9.786105 GTTTCCAAAATGACATTGTTGAAAAAT 57.214 25.926 15.62 0.00 0.00 1.82
86 87 9.784680 TTTCCAAAATGACATTGTTGAAAAATG 57.215 25.926 12.85 6.54 40.23 2.32
88 89 9.605275 TCCAAAATGACATTGTTGAAAAATGTA 57.395 25.926 13.35 3.86 45.81 2.29
162 163 9.671279 AACAACTGAAAGAAAATTTTTGGAGAT 57.329 25.926 4.63 0.00 37.43 2.75
163 164 9.671279 ACAACTGAAAGAAAATTTTTGGAGATT 57.329 25.926 4.63 0.00 37.43 2.40
165 166 9.889128 AACTGAAAGAAAATTTTTGGAGATTCA 57.111 25.926 4.63 8.65 37.43 2.57
180 181 9.474920 TTTGGAGATTCATAAAACATTTGTGAC 57.525 29.630 2.34 0.00 0.00 3.67
181 182 8.175925 TGGAGATTCATAAAACATTTGTGACA 57.824 30.769 2.34 0.00 0.00 3.58
182 183 8.805175 TGGAGATTCATAAAACATTTGTGACAT 58.195 29.630 2.34 1.33 0.00 3.06
183 184 9.643693 GGAGATTCATAAAACATTTGTGACATT 57.356 29.630 2.34 0.00 0.00 2.71
351 352 7.925043 ATGCATTTGATAATTTTCCAAAGCA 57.075 28.000 12.50 12.50 37.79 3.91
352 353 7.925043 TGCATTTGATAATTTTCCAAAGCAT 57.075 28.000 8.00 0.00 33.51 3.79
353 354 9.616156 ATGCATTTGATAATTTTCCAAAGCATA 57.384 25.926 17.52 0.54 39.62 3.14
354 355 9.616156 TGCATTTGATAATTTTCCAAAGCATAT 57.384 25.926 8.00 0.00 33.51 1.78
378 379 8.836268 ATCATAAAAATGTTTCACATGTGCTT 57.164 26.923 21.38 6.33 37.97 3.91
379 380 9.926158 ATCATAAAAATGTTTCACATGTGCTTA 57.074 25.926 21.38 7.58 37.97 3.09
380 381 9.755804 TCATAAAAATGTTTCACATGTGCTTAA 57.244 25.926 21.38 11.67 37.97 1.85
446 447 9.773328 ATAAAGAAACAAAAGAAAAGCAAAAGC 57.227 25.926 0.00 0.00 0.00 3.51
447 448 6.799926 AGAAACAAAAGAAAAGCAAAAGCA 57.200 29.167 0.00 0.00 0.00 3.91
448 449 7.381766 AGAAACAAAAGAAAAGCAAAAGCAT 57.618 28.000 0.00 0.00 0.00 3.79
449 450 8.491331 AGAAACAAAAGAAAAGCAAAAGCATA 57.509 26.923 0.00 0.00 0.00 3.14
450 451 8.945057 AGAAACAAAAGAAAAGCAAAAGCATAA 58.055 25.926 0.00 0.00 0.00 1.90
451 452 9.720667 GAAACAAAAGAAAAGCAAAAGCATAAT 57.279 25.926 0.00 0.00 0.00 1.28
501 502 8.664798 ACAATTAGAAAACAAAGAAACCAAAGC 58.335 29.630 0.00 0.00 0.00 3.51
502 503 8.663911 CAATTAGAAAACAAAGAAACCAAAGCA 58.336 29.630 0.00 0.00 0.00 3.91
503 504 8.785329 ATTAGAAAACAAAGAAACCAAAGCAA 57.215 26.923 0.00 0.00 0.00 3.91
504 505 8.608844 TTAGAAAACAAAGAAACCAAAGCAAA 57.391 26.923 0.00 0.00 0.00 3.68
505 506 7.503521 AGAAAACAAAGAAACCAAAGCAAAA 57.496 28.000 0.00 0.00 0.00 2.44
506 507 8.109705 AGAAAACAAAGAAACCAAAGCAAAAT 57.890 26.923 0.00 0.00 0.00 1.82
507 508 8.022550 AGAAAACAAAGAAACCAAAGCAAAATG 58.977 29.630 0.00 0.00 0.00 2.32
508 509 7.446001 AAACAAAGAAACCAAAGCAAAATGA 57.554 28.000 0.00 0.00 0.00 2.57
509 510 7.446001 AACAAAGAAACCAAAGCAAAATGAA 57.554 28.000 0.00 0.00 0.00 2.57
510 511 7.075674 ACAAAGAAACCAAAGCAAAATGAAG 57.924 32.000 0.00 0.00 0.00 3.02
511 512 6.878389 ACAAAGAAACCAAAGCAAAATGAAGA 59.122 30.769 0.00 0.00 0.00 2.87
512 513 7.390162 ACAAAGAAACCAAAGCAAAATGAAGAA 59.610 29.630 0.00 0.00 0.00 2.52
513 514 7.920160 AAGAAACCAAAGCAAAATGAAGAAA 57.080 28.000 0.00 0.00 0.00 2.52
514 515 7.920160 AGAAACCAAAGCAAAATGAAGAAAA 57.080 28.000 0.00 0.00 0.00 2.29
515 516 8.334263 AGAAACCAAAGCAAAATGAAGAAAAA 57.666 26.923 0.00 0.00 0.00 1.94
537 538 7.848223 AAAATGGAAAACTGAAGAAAACCAG 57.152 32.000 0.00 0.00 36.53 4.00
538 539 6.544928 AATGGAAAACTGAAGAAAACCAGT 57.455 33.333 0.00 0.00 44.69 4.00
539 540 5.323371 TGGAAAACTGAAGAAAACCAGTG 57.677 39.130 0.00 0.00 42.25 3.66
540 541 4.770010 TGGAAAACTGAAGAAAACCAGTGT 59.230 37.500 0.00 0.00 42.25 3.55
541 542 5.946972 TGGAAAACTGAAGAAAACCAGTGTA 59.053 36.000 0.00 0.00 42.25 2.90
542 543 6.434652 TGGAAAACTGAAGAAAACCAGTGTAA 59.565 34.615 0.00 0.00 42.25 2.41
543 544 7.039644 TGGAAAACTGAAGAAAACCAGTGTAAA 60.040 33.333 0.00 0.00 42.25 2.01
544 545 7.274904 GGAAAACTGAAGAAAACCAGTGTAAAC 59.725 37.037 0.00 0.00 42.25 2.01
545 546 6.827586 AACTGAAGAAAACCAGTGTAAACA 57.172 33.333 0.00 0.00 42.25 2.83
546 547 6.827586 ACTGAAGAAAACCAGTGTAAACAA 57.172 33.333 0.00 0.00 41.59 2.83
547 548 6.617879 ACTGAAGAAAACCAGTGTAAACAAC 58.382 36.000 0.00 0.00 41.59 3.32
548 549 6.207810 ACTGAAGAAAACCAGTGTAAACAACA 59.792 34.615 0.00 0.00 41.59 3.33
549 550 6.982852 TGAAGAAAACCAGTGTAAACAACAA 58.017 32.000 0.00 0.00 40.63 2.83
550 551 7.434492 TGAAGAAAACCAGTGTAAACAACAAA 58.566 30.769 0.00 0.00 40.63 2.83
551 552 8.091449 TGAAGAAAACCAGTGTAAACAACAAAT 58.909 29.630 0.00 0.00 40.63 2.32
552 553 9.575783 GAAGAAAACCAGTGTAAACAACAAATA 57.424 29.630 0.00 0.00 40.63 1.40
553 554 9.930693 AAGAAAACCAGTGTAAACAACAAATAA 57.069 25.926 0.00 0.00 40.63 1.40
554 555 9.930693 AGAAAACCAGTGTAAACAACAAATAAA 57.069 25.926 0.00 0.00 40.63 1.40
558 559 9.877178 AACCAGTGTAAACAACAAATAAAATCA 57.123 25.926 0.00 0.00 40.63 2.57
559 560 9.877178 ACCAGTGTAAACAACAAATAAAATCAA 57.123 25.926 0.00 0.00 40.63 2.57
590 591 7.563888 AAAACAACTAGAAAACCAGACCTAC 57.436 36.000 0.00 0.00 0.00 3.18
591 592 5.881923 ACAACTAGAAAACCAGACCTACA 57.118 39.130 0.00 0.00 0.00 2.74
592 593 5.608449 ACAACTAGAAAACCAGACCTACAC 58.392 41.667 0.00 0.00 0.00 2.90
593 594 4.516365 ACTAGAAAACCAGACCTACACG 57.484 45.455 0.00 0.00 0.00 4.49
594 595 4.147321 ACTAGAAAACCAGACCTACACGA 58.853 43.478 0.00 0.00 0.00 4.35
595 596 4.586001 ACTAGAAAACCAGACCTACACGAA 59.414 41.667 0.00 0.00 0.00 3.85
596 597 3.725490 AGAAAACCAGACCTACACGAAC 58.275 45.455 0.00 0.00 0.00 3.95
597 598 2.538512 AAACCAGACCTACACGAACC 57.461 50.000 0.00 0.00 0.00 3.62
598 599 1.713297 AACCAGACCTACACGAACCT 58.287 50.000 0.00 0.00 0.00 3.50
599 600 2.592102 ACCAGACCTACACGAACCTA 57.408 50.000 0.00 0.00 0.00 3.08
600 601 2.165998 ACCAGACCTACACGAACCTAC 58.834 52.381 0.00 0.00 0.00 3.18
601 602 2.165167 CCAGACCTACACGAACCTACA 58.835 52.381 0.00 0.00 0.00 2.74
602 603 2.163815 CCAGACCTACACGAACCTACAG 59.836 54.545 0.00 0.00 0.00 2.74
603 604 1.817447 AGACCTACACGAACCTACAGC 59.183 52.381 0.00 0.00 0.00 4.40
604 605 0.524862 ACCTACACGAACCTACAGCG 59.475 55.000 0.00 0.00 0.00 5.18
605 606 0.806868 CCTACACGAACCTACAGCGA 59.193 55.000 0.00 0.00 0.00 4.93
606 607 1.200716 CCTACACGAACCTACAGCGAA 59.799 52.381 0.00 0.00 0.00 4.70
607 608 2.516923 CTACACGAACCTACAGCGAAG 58.483 52.381 0.00 0.00 0.00 3.79
608 609 0.956633 ACACGAACCTACAGCGAAGA 59.043 50.000 0.00 0.00 0.00 2.87
609 610 1.338973 ACACGAACCTACAGCGAAGAA 59.661 47.619 0.00 0.00 0.00 2.52
610 611 2.223876 ACACGAACCTACAGCGAAGAAA 60.224 45.455 0.00 0.00 0.00 2.52
611 612 2.798283 CACGAACCTACAGCGAAGAAAA 59.202 45.455 0.00 0.00 0.00 2.29
612 613 3.432252 CACGAACCTACAGCGAAGAAAAT 59.568 43.478 0.00 0.00 0.00 1.82
613 614 4.624024 CACGAACCTACAGCGAAGAAAATA 59.376 41.667 0.00 0.00 0.00 1.40
614 615 5.119588 CACGAACCTACAGCGAAGAAAATAA 59.880 40.000 0.00 0.00 0.00 1.40
615 616 5.873164 ACGAACCTACAGCGAAGAAAATAAT 59.127 36.000 0.00 0.00 0.00 1.28
616 617 7.009815 CACGAACCTACAGCGAAGAAAATAATA 59.990 37.037 0.00 0.00 0.00 0.98
617 618 7.546667 ACGAACCTACAGCGAAGAAAATAATAA 59.453 33.333 0.00 0.00 0.00 1.40
618 619 8.548721 CGAACCTACAGCGAAGAAAATAATAAT 58.451 33.333 0.00 0.00 0.00 1.28
671 672 4.937696 AAAGGAAAAGCAAACAAAACCG 57.062 36.364 0.00 0.00 0.00 4.44
672 673 3.878160 AGGAAAAGCAAACAAAACCGA 57.122 38.095 0.00 0.00 0.00 4.69
673 674 4.400529 AGGAAAAGCAAACAAAACCGAT 57.599 36.364 0.00 0.00 0.00 4.18
674 675 4.119136 AGGAAAAGCAAACAAAACCGATG 58.881 39.130 0.00 0.00 0.00 3.84
675 676 4.116238 GGAAAAGCAAACAAAACCGATGA 58.884 39.130 0.00 0.00 0.00 2.92
676 677 4.568760 GGAAAAGCAAACAAAACCGATGAA 59.431 37.500 0.00 0.00 0.00 2.57
677 678 5.064071 GGAAAAGCAAACAAAACCGATGAAA 59.936 36.000 0.00 0.00 0.00 2.69
678 679 6.402658 GGAAAAGCAAACAAAACCGATGAAAA 60.403 34.615 0.00 0.00 0.00 2.29
679 680 6.487689 AAAGCAAACAAAACCGATGAAAAA 57.512 29.167 0.00 0.00 0.00 1.94
741 742 2.146920 AAAACAGGGAAAACCCGACA 57.853 45.000 0.00 0.00 41.63 4.35
742 743 1.687563 AAACAGGGAAAACCCGACAG 58.312 50.000 0.00 0.00 41.63 3.51
743 744 0.549469 AACAGGGAAAACCCGACAGT 59.451 50.000 0.00 0.00 41.63 3.55
744 745 0.179029 ACAGGGAAAACCCGACAGTG 60.179 55.000 0.00 0.00 41.63 3.66
745 746 1.228154 AGGGAAAACCCGACAGTGC 60.228 57.895 0.00 0.00 41.63 4.40
746 747 2.613506 GGGAAAACCCGACAGTGCG 61.614 63.158 0.00 0.00 35.07 5.34
754 755 2.125912 CGACAGTGCGGAGGGAAG 60.126 66.667 0.00 0.00 0.00 3.46
755 756 2.266055 GACAGTGCGGAGGGAAGG 59.734 66.667 0.00 0.00 0.00 3.46
756 757 2.203788 ACAGTGCGGAGGGAAGGA 60.204 61.111 0.00 0.00 0.00 3.36
757 758 1.827399 GACAGTGCGGAGGGAAGGAA 61.827 60.000 0.00 0.00 0.00 3.36
758 759 1.376037 CAGTGCGGAGGGAAGGAAC 60.376 63.158 0.00 0.00 0.00 3.62
759 760 2.046217 GTGCGGAGGGAAGGAACC 60.046 66.667 0.00 0.00 0.00 3.62
760 761 2.203938 TGCGGAGGGAAGGAACCT 60.204 61.111 0.00 0.00 42.18 3.50
764 765 3.715015 GAGGGAAGGAACCTCGCT 58.285 61.111 0.00 2.28 44.50 4.93
765 766 2.897699 GAGGGAAGGAACCTCGCTA 58.102 57.895 0.00 0.00 44.50 4.26
766 767 0.460722 GAGGGAAGGAACCTCGCTAC 59.539 60.000 0.00 0.00 44.50 3.58
767 768 0.041386 AGGGAAGGAACCTCGCTACT 59.959 55.000 0.00 0.00 31.01 2.57
768 769 0.175989 GGGAAGGAACCTCGCTACTG 59.824 60.000 0.00 0.00 0.00 2.74
769 770 0.175989 GGAAGGAACCTCGCTACTGG 59.824 60.000 0.00 0.00 0.00 4.00
770 771 0.175989 GAAGGAACCTCGCTACTGGG 59.824 60.000 0.00 0.00 0.00 4.45
771 772 0.544595 AAGGAACCTCGCTACTGGGT 60.545 55.000 0.00 0.00 34.47 4.51
772 773 1.218316 GGAACCTCGCTACTGGGTG 59.782 63.158 0.00 0.00 33.20 4.61
773 774 1.218316 GAACCTCGCTACTGGGTGG 59.782 63.158 0.00 0.00 42.91 4.61
774 775 2.240162 GAACCTCGCTACTGGGTGGG 62.240 65.000 0.00 0.00 41.98 4.61
775 776 2.683933 CCTCGCTACTGGGTGGGT 60.684 66.667 0.00 0.00 36.52 4.51
776 777 2.722201 CCTCGCTACTGGGTGGGTC 61.722 68.421 0.00 0.00 36.52 4.46
777 778 3.064987 CTCGCTACTGGGTGGGTCG 62.065 68.421 0.00 0.00 0.00 4.79
778 779 4.143333 CGCTACTGGGTGGGTCGG 62.143 72.222 0.00 0.00 0.00 4.79
779 780 4.468689 GCTACTGGGTGGGTCGGC 62.469 72.222 0.00 0.00 0.00 5.54
780 781 3.782443 CTACTGGGTGGGTCGGCC 61.782 72.222 0.00 0.00 0.00 6.13
781 782 4.326227 TACTGGGTGGGTCGGCCT 62.326 66.667 5.77 0.00 34.45 5.19
784 785 3.976490 CTGGGTGGGTCGGCCTCTA 62.976 68.421 5.77 0.00 34.45 2.43
785 786 3.468140 GGGTGGGTCGGCCTCTAC 61.468 72.222 5.77 2.78 34.45 2.59
786 787 2.682494 GGTGGGTCGGCCTCTACA 60.682 66.667 5.77 0.00 34.45 2.74
787 788 2.722201 GGTGGGTCGGCCTCTACAG 61.722 68.421 5.77 0.00 34.45 2.74
788 789 3.075005 TGGGTCGGCCTCTACAGC 61.075 66.667 5.77 0.00 34.45 4.40
789 790 4.208686 GGGTCGGCCTCTACAGCG 62.209 72.222 5.77 0.00 34.45 5.18
790 791 4.874977 GGTCGGCCTCTACAGCGC 62.875 72.222 0.00 0.00 0.00 5.92
807 808 4.851114 CGCGCGTGATGCTTTCGG 62.851 66.667 24.19 0.00 43.27 4.30
809 810 3.490759 CGCGTGATGCTTTCGGCT 61.491 61.111 0.00 0.00 43.27 5.52
810 811 2.099062 GCGTGATGCTTTCGGCTG 59.901 61.111 0.00 0.00 42.39 4.85
811 812 2.099062 CGTGATGCTTTCGGCTGC 59.901 61.111 0.00 0.00 42.39 5.25
812 813 2.679934 CGTGATGCTTTCGGCTGCA 61.680 57.895 0.50 0.00 43.67 4.41
817 818 2.857592 ATGCTTTCGGCTGCATTAAG 57.142 45.000 0.50 2.37 46.29 1.85
818 819 1.819928 TGCTTTCGGCTGCATTAAGA 58.180 45.000 0.50 0.00 42.39 2.10
819 820 2.158559 TGCTTTCGGCTGCATTAAGAA 58.841 42.857 0.50 0.00 42.39 2.52
820 821 2.162208 TGCTTTCGGCTGCATTAAGAAG 59.838 45.455 0.50 0.00 42.39 2.85
821 822 2.420022 GCTTTCGGCTGCATTAAGAAGA 59.580 45.455 0.50 0.00 38.06 2.87
842 843 1.227943 CATACATCAGGTGGGCCGG 60.228 63.158 0.00 0.00 40.50 6.13
859 860 2.508751 GGAGATCTGGGCCCGTACC 61.509 68.421 19.37 10.74 0.00 3.34
863 864 0.255033 GATCTGGGCCCGTACCTTTT 59.745 55.000 19.37 0.00 0.00 2.27
864 865 0.702316 ATCTGGGCCCGTACCTTTTT 59.298 50.000 19.37 0.00 0.00 1.94
879 880 3.644265 ACCTTTTTAAGCCCAAAACCGAT 59.356 39.130 0.00 0.00 0.00 4.18
903 904 4.911390 AGAGCCCAGCCATTGTATATAAC 58.089 43.478 0.00 0.00 0.00 1.89
910 911 5.385198 CAGCCATTGTATATAACCCAACCT 58.615 41.667 0.00 0.00 0.00 3.50
911 912 5.241506 CAGCCATTGTATATAACCCAACCTG 59.758 44.000 0.00 0.00 0.00 4.00
912 913 5.133660 AGCCATTGTATATAACCCAACCTGA 59.866 40.000 0.00 0.00 0.00 3.86
913 914 5.473504 GCCATTGTATATAACCCAACCTGAG 59.526 44.000 0.00 0.00 0.00 3.35
915 916 6.183361 CCATTGTATATAACCCAACCTGAGGA 60.183 42.308 4.99 0.00 0.00 3.71
917 918 6.243216 TGTATATAACCCAACCTGAGGAAC 57.757 41.667 4.99 0.00 0.00 3.62
920 921 2.359975 CCCAACCTGAGGAACGCC 60.360 66.667 4.99 0.00 0.00 5.68
971 972 3.006644 ACGAGTTTGAAACCTACCCTCTC 59.993 47.826 4.14 0.00 0.00 3.20
1038 1039 4.021925 GGAGACCTGGCGGTGCTT 62.022 66.667 5.76 0.00 45.73 3.91
1376 1393 3.007290 CCAGGAGGATGATCGAAGCAATA 59.993 47.826 0.00 0.00 36.89 1.90
1712 1730 2.758979 TGATCTCCGGTACCTCAAAGTC 59.241 50.000 10.90 2.04 0.00 3.01
1856 1874 1.003718 GGTTCCTGGAGTCCAACCG 60.004 63.158 14.17 1.23 30.80 4.44
1921 1939 3.619038 GCTAATGGAGTCGAAGAACAAGG 59.381 47.826 0.00 0.00 39.69 3.61
1931 1949 6.346896 AGTCGAAGAACAAGGTTAAGAAAGT 58.653 36.000 0.00 0.00 39.69 2.66
2000 2018 3.929610 GAGACACTGGCACTTCTATGTTC 59.070 47.826 0.00 0.00 0.00 3.18
2010 2028 4.082733 GCACTTCTATGTTCCAAAGGTTCC 60.083 45.833 0.00 0.00 0.00 3.62
2011 2029 4.459337 CACTTCTATGTTCCAAAGGTTCCC 59.541 45.833 0.00 0.00 0.00 3.97
2041 2059 5.885912 TGGGATTACTTTGTAGATTCAAGCC 59.114 40.000 0.00 0.00 0.00 4.35
2044 2062 5.514500 TTACTTTGTAGATTCAAGCCCCT 57.486 39.130 0.00 0.00 0.00 4.79
2178 2196 3.508762 ACGTATTAGTTTCCAGTCTGCG 58.491 45.455 0.00 0.00 0.00 5.18
2211 2229 5.560724 TCCTAAATTTCTTGGAGTCCTGTG 58.439 41.667 11.33 0.52 0.00 3.66
2237 2255 6.829229 TTACTGTTCTTTCGGTCTAGATCA 57.171 37.500 3.42 0.00 0.00 2.92
2290 2367 5.586243 TCTCTTCCACTAACTATGCAATTGC 59.414 40.000 23.69 23.69 42.50 3.56
2346 2423 4.744631 CCTTGGGTTGTTCATTCTTTTTCG 59.255 41.667 0.00 0.00 0.00 3.46
2534 2611 3.111853 TGATACCGCAAGTGATGATCC 57.888 47.619 0.00 0.00 0.00 3.36
2587 2664 4.584325 ACCGTGGTGAAACTAGTAAGTGTA 59.416 41.667 0.00 0.00 35.62 2.90
2623 2700 5.462729 TGTCGTTCAGCGTAAAATTCAAGTA 59.537 36.000 0.00 0.00 42.13 2.24
2635 2712 4.650972 AATTCAAGTAACTGGCTGGGTA 57.349 40.909 0.00 0.00 0.00 3.69
2646 2723 5.306114 ACTGGCTGGGTATAAACTAATCC 57.694 43.478 0.00 0.00 0.00 3.01
2690 2767 1.005097 AGCATGCAGAGAATTCCCACA 59.995 47.619 21.98 0.00 0.00 4.17
2965 3042 1.527844 GATGCCTGCCAGATGGACC 60.528 63.158 2.18 0.00 37.39 4.46
3003 3080 4.640771 TGTGGAGCCACTAGAATTCTTT 57.359 40.909 14.36 0.00 46.30 2.52
3012 3089 8.691661 AGCCACTAGAATTCTTTAAAGAACAA 57.308 30.769 28.38 11.17 46.80 2.83
3052 3130 5.875359 GTGGTAGTGATACTTTTCTGAAGGG 59.125 44.000 0.00 0.00 0.00 3.95
3066 3144 1.217183 TGAAGGGCGGACTACTATCCT 59.783 52.381 0.00 0.00 36.52 3.24
3067 3145 1.887854 GAAGGGCGGACTACTATCCTC 59.112 57.143 0.00 0.00 36.52 3.71
3165 3244 5.539574 ACATTTCATTGAACAGATTCCACCA 59.460 36.000 0.00 0.00 33.49 4.17
3180 3259 0.602638 CACCAAAGGTAGCAGCACGA 60.603 55.000 0.00 0.00 32.11 4.35
3182 3261 0.602638 CCAAAGGTAGCAGCACGACA 60.603 55.000 0.00 0.00 0.00 4.35
3290 3370 8.612619 AGTTATCAGTTTTATAAGAATGTGCCG 58.387 33.333 3.73 0.00 0.00 5.69
3500 3591 6.833933 ACTGTTTTCTTCTTTGTACAGGGAAT 59.166 34.615 11.26 0.00 37.80 3.01
3594 3688 5.123186 TGTTGACGACTTGTTTGAATCTGTT 59.877 36.000 0.00 0.00 0.00 3.16
3654 3748 2.571548 GCACCAAGCATTGTAGGCT 58.428 52.632 0.00 0.00 46.99 4.58
3655 3749 0.453390 GCACCAAGCATTGTAGGCTC 59.547 55.000 0.00 0.00 46.99 4.70
3656 3750 0.729116 CACCAAGCATTGTAGGCTCG 59.271 55.000 0.00 0.00 46.99 5.03
3657 3751 0.613260 ACCAAGCATTGTAGGCTCGA 59.387 50.000 0.00 0.00 46.99 4.04
3658 3752 1.003118 ACCAAGCATTGTAGGCTCGAA 59.997 47.619 0.00 0.00 46.99 3.71
3671 3765 1.062587 GGCTCGAATCGATTGTTGTGG 59.937 52.381 16.96 1.05 34.61 4.17
3675 3769 1.060553 CGAATCGATTGTTGTGGTCCG 59.939 52.381 16.96 5.54 0.00 4.79
3725 3819 6.233905 TCATCGAGGTGAGGATTGAATAAA 57.766 37.500 0.00 0.00 31.23 1.40
3726 3820 6.649155 TCATCGAGGTGAGGATTGAATAAAA 58.351 36.000 0.00 0.00 31.23 1.52
3728 3822 7.442364 TCATCGAGGTGAGGATTGAATAAAATC 59.558 37.037 0.00 0.00 31.23 2.17
3730 3824 7.338710 TCGAGGTGAGGATTGAATAAAATCTT 58.661 34.615 0.00 0.00 36.87 2.40
3732 3826 7.280876 CGAGGTGAGGATTGAATAAAATCTTCA 59.719 37.037 7.42 7.42 45.23 3.02
3733 3827 8.517062 AGGTGAGGATTGAATAAAATCTTCAG 57.483 34.615 10.79 0.00 46.86 3.02
3768 3875 7.096477 CGAATTGTTGAGGATCTTGTTTTGTTC 60.096 37.037 0.00 0.00 34.92 3.18
3792 3899 5.297547 GGATGTCCGTAAATTGCATAGAGA 58.702 41.667 0.00 0.00 0.00 3.10
3793 3900 5.758296 GGATGTCCGTAAATTGCATAGAGAA 59.242 40.000 0.00 0.00 0.00 2.87
3872 3980 6.406370 TGAATAACCAGAGATGTCAAATCGT 58.594 36.000 0.00 0.00 0.00 3.73
4147 4276 4.752101 CACAACAGGGTACAGAAGAAGAAG 59.248 45.833 0.00 0.00 0.00 2.85
4149 4278 5.130477 ACAACAGGGTACAGAAGAAGAAGAA 59.870 40.000 0.00 0.00 0.00 2.52
4150 4279 5.476091 ACAGGGTACAGAAGAAGAAGAAG 57.524 43.478 0.00 0.00 0.00 2.85
4164 4293 0.037605 AAGAAGGCGACGAAACCGAT 60.038 50.000 0.00 0.00 0.00 4.18
4215 4344 2.022195 CCTGAAGGGTCTTGATGCATG 58.978 52.381 2.46 0.00 0.00 4.06
4216 4345 1.404391 CTGAAGGGTCTTGATGCATGC 59.596 52.381 11.82 11.82 0.00 4.06
4217 4346 1.272037 TGAAGGGTCTTGATGCATGCA 60.272 47.619 25.04 25.04 0.00 3.96
4218 4347 1.404391 GAAGGGTCTTGATGCATGCAG 59.596 52.381 26.69 12.45 0.00 4.41
4219 4348 0.395311 AGGGTCTTGATGCATGCAGG 60.395 55.000 26.69 15.16 0.00 4.85
4220 4349 1.436336 GGTCTTGATGCATGCAGGC 59.564 57.895 26.69 18.05 0.00 4.85
4248 4377 1.518572 GGGACGTATCAGGCGTGTG 60.519 63.158 6.26 0.00 43.04 3.82
4270 4410 2.206576 AACTCACAGGCCCAAGATTC 57.793 50.000 0.00 0.00 0.00 2.52
4349 4526 5.781210 TGTATACTCTCCATCTTGCTGAG 57.219 43.478 4.17 0.00 0.00 3.35
4354 4531 5.690464 ACTCTCCATCTTGCTGAGTTAAT 57.310 39.130 0.00 0.00 34.78 1.40
4355 4532 6.059787 ACTCTCCATCTTGCTGAGTTAATT 57.940 37.500 0.00 0.00 34.78 1.40
4356 4533 7.187824 ACTCTCCATCTTGCTGAGTTAATTA 57.812 36.000 0.00 0.00 34.78 1.40
4357 4534 7.624549 ACTCTCCATCTTGCTGAGTTAATTAA 58.375 34.615 0.00 0.00 34.78 1.40
4358 4535 7.550906 ACTCTCCATCTTGCTGAGTTAATTAAC 59.449 37.037 18.77 18.77 34.78 2.01
4360 4537 8.758829 TCTCCATCTTGCTGAGTTAATTAACTA 58.241 33.333 26.80 12.74 45.84 2.24
4400 4862 2.355115 GGAGGGGCACACGGATTT 59.645 61.111 0.00 0.00 0.00 2.17
4431 4893 2.959030 TCAGATAGCGGTGCAATCTACT 59.041 45.455 0.00 0.00 0.00 2.57
4432 4894 3.004839 TCAGATAGCGGTGCAATCTACTC 59.995 47.826 0.00 0.00 0.00 2.59
4435 4897 1.153628 GCGGTGCAATCTACTCCGT 60.154 57.895 10.81 0.00 42.62 4.69
4437 4899 1.836383 CGGTGCAATCTACTCCGTAC 58.164 55.000 1.75 0.00 36.99 3.67
4438 4900 1.133598 CGGTGCAATCTACTCCGTACA 59.866 52.381 1.75 0.00 36.99 2.90
4440 4902 3.737047 CGGTGCAATCTACTCCGTACAAT 60.737 47.826 1.75 0.00 36.99 2.71
4441 4903 3.555956 GGTGCAATCTACTCCGTACAATG 59.444 47.826 0.00 0.00 0.00 2.82
4442 4904 3.001330 GTGCAATCTACTCCGTACAATGC 59.999 47.826 0.00 0.00 0.00 3.56
4443 4905 3.194861 GCAATCTACTCCGTACAATGCA 58.805 45.455 0.00 0.00 0.00 3.96
4447 4909 4.307443 TCTACTCCGTACAATGCATCAG 57.693 45.455 0.00 0.00 0.00 2.90
4448 4910 1.656652 ACTCCGTACAATGCATCAGC 58.343 50.000 0.00 0.00 42.57 4.26
4541 5004 0.678048 AGGATGGCGCCAAGAGAAAC 60.678 55.000 36.33 17.60 0.00 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 9.508642 TGGAACATACATTTGTTTGACTGTATA 57.491 29.630 7.93 0.00 39.85 1.47
13 14 8.402798 TGGAACATACATTTGTTTGACTGTAT 57.597 30.769 7.93 0.00 39.85 2.29
14 15 7.809546 TGGAACATACATTTGTTTGACTGTA 57.190 32.000 7.93 0.00 39.85 2.74
15 16 6.707440 TGGAACATACATTTGTTTGACTGT 57.293 33.333 7.93 0.00 39.85 3.55
46 47 9.474920 GTCATTTTGGAAACTCATGAAACATTA 57.525 29.630 0.00 0.00 0.00 1.90
47 48 7.986320 TGTCATTTTGGAAACTCATGAAACATT 59.014 29.630 0.00 0.00 0.00 2.71
48 49 7.499292 TGTCATTTTGGAAACTCATGAAACAT 58.501 30.769 0.00 0.00 0.00 2.71
49 50 6.871844 TGTCATTTTGGAAACTCATGAAACA 58.128 32.000 0.00 0.00 0.00 2.83
50 51 7.951530 ATGTCATTTTGGAAACTCATGAAAC 57.048 32.000 0.00 0.00 0.00 2.78
51 52 7.986320 ACAATGTCATTTTGGAAACTCATGAAA 59.014 29.630 0.00 0.00 0.00 2.69
52 53 7.499292 ACAATGTCATTTTGGAAACTCATGAA 58.501 30.769 0.00 0.00 0.00 2.57
53 54 7.053316 ACAATGTCATTTTGGAAACTCATGA 57.947 32.000 0.00 0.00 0.00 3.07
54 55 7.438757 TCAACAATGTCATTTTGGAAACTCATG 59.561 33.333 14.84 0.00 0.00 3.07
55 56 7.499292 TCAACAATGTCATTTTGGAAACTCAT 58.501 30.769 14.84 0.00 0.00 2.90
56 57 6.871844 TCAACAATGTCATTTTGGAAACTCA 58.128 32.000 14.84 0.00 0.00 3.41
57 58 7.769272 TTCAACAATGTCATTTTGGAAACTC 57.231 32.000 14.84 0.00 0.00 3.01
58 59 8.558973 TTTTCAACAATGTCATTTTGGAAACT 57.441 26.923 12.03 0.00 0.00 2.66
59 60 9.786105 ATTTTTCAACAATGTCATTTTGGAAAC 57.214 25.926 12.03 0.00 28.29 2.78
60 61 9.784680 CATTTTTCAACAATGTCATTTTGGAAA 57.215 25.926 9.34 9.34 0.00 3.13
61 62 8.954350 ACATTTTTCAACAATGTCATTTTGGAA 58.046 25.926 14.84 8.33 40.17 3.53
62 63 8.503458 ACATTTTTCAACAATGTCATTTTGGA 57.497 26.923 14.84 3.60 40.17 3.53
136 137 9.671279 ATCTCCAAAAATTTTCTTTCAGTTGTT 57.329 25.926 3.41 0.00 0.00 2.83
137 138 9.671279 AATCTCCAAAAATTTTCTTTCAGTTGT 57.329 25.926 3.41 0.00 0.00 3.32
139 140 9.889128 TGAATCTCCAAAAATTTTCTTTCAGTT 57.111 25.926 3.41 0.00 0.00 3.16
154 155 9.474920 GTCACAAATGTTTTATGAATCTCCAAA 57.525 29.630 0.00 0.00 0.00 3.28
155 156 8.637099 TGTCACAAATGTTTTATGAATCTCCAA 58.363 29.630 0.00 0.00 0.00 3.53
156 157 8.175925 TGTCACAAATGTTTTATGAATCTCCA 57.824 30.769 0.00 0.00 0.00 3.86
157 158 9.643693 AATGTCACAAATGTTTTATGAATCTCC 57.356 29.630 0.00 0.00 0.00 3.71
325 326 9.445878 TGCTTTGGAAAATTATCAAATGCATAA 57.554 25.926 0.00 0.00 33.83 1.90
326 327 9.616156 ATGCTTTGGAAAATTATCAAATGCATA 57.384 25.926 20.14 0.00 39.84 3.14
327 328 7.925043 TGCTTTGGAAAATTATCAAATGCAT 57.075 28.000 0.00 0.00 33.83 3.96
328 329 7.925043 ATGCTTTGGAAAATTATCAAATGCA 57.075 28.000 16.80 16.80 38.05 3.96
420 421 9.773328 GCTTTTGCTTTTCTTTTGTTTCTTTAT 57.227 25.926 0.00 0.00 43.35 1.40
475 476 8.664798 GCTTTGGTTTCTTTGTTTTCTAATTGT 58.335 29.630 0.00 0.00 0.00 2.71
476 477 8.663911 TGCTTTGGTTTCTTTGTTTTCTAATTG 58.336 29.630 0.00 0.00 0.00 2.32
477 478 8.785329 TGCTTTGGTTTCTTTGTTTTCTAATT 57.215 26.923 0.00 0.00 0.00 1.40
478 479 8.785329 TTGCTTTGGTTTCTTTGTTTTCTAAT 57.215 26.923 0.00 0.00 0.00 1.73
479 480 8.608844 TTTGCTTTGGTTTCTTTGTTTTCTAA 57.391 26.923 0.00 0.00 0.00 2.10
480 481 8.608844 TTTTGCTTTGGTTTCTTTGTTTTCTA 57.391 26.923 0.00 0.00 0.00 2.10
481 482 7.503521 TTTTGCTTTGGTTTCTTTGTTTTCT 57.496 28.000 0.00 0.00 0.00 2.52
482 483 8.020244 TCATTTTGCTTTGGTTTCTTTGTTTTC 58.980 29.630 0.00 0.00 0.00 2.29
483 484 7.880105 TCATTTTGCTTTGGTTTCTTTGTTTT 58.120 26.923 0.00 0.00 0.00 2.43
484 485 7.446001 TCATTTTGCTTTGGTTTCTTTGTTT 57.554 28.000 0.00 0.00 0.00 2.83
485 486 7.390162 TCTTCATTTTGCTTTGGTTTCTTTGTT 59.610 29.630 0.00 0.00 0.00 2.83
486 487 6.878389 TCTTCATTTTGCTTTGGTTTCTTTGT 59.122 30.769 0.00 0.00 0.00 2.83
487 488 7.306205 TCTTCATTTTGCTTTGGTTTCTTTG 57.694 32.000 0.00 0.00 0.00 2.77
488 489 7.920160 TTCTTCATTTTGCTTTGGTTTCTTT 57.080 28.000 0.00 0.00 0.00 2.52
489 490 7.920160 TTTCTTCATTTTGCTTTGGTTTCTT 57.080 28.000 0.00 0.00 0.00 2.52
490 491 7.920160 TTTTCTTCATTTTGCTTTGGTTTCT 57.080 28.000 0.00 0.00 0.00 2.52
512 513 7.882791 ACTGGTTTTCTTCAGTTTTCCATTTTT 59.117 29.630 0.00 0.00 40.91 1.94
513 514 7.334171 CACTGGTTTTCTTCAGTTTTCCATTTT 59.666 33.333 0.00 0.00 41.71 1.82
514 515 6.818142 CACTGGTTTTCTTCAGTTTTCCATTT 59.182 34.615 0.00 0.00 41.71 2.32
515 516 6.070824 ACACTGGTTTTCTTCAGTTTTCCATT 60.071 34.615 0.00 0.00 41.71 3.16
516 517 5.422012 ACACTGGTTTTCTTCAGTTTTCCAT 59.578 36.000 0.00 0.00 41.71 3.41
517 518 4.770010 ACACTGGTTTTCTTCAGTTTTCCA 59.230 37.500 0.00 0.00 41.71 3.53
518 519 5.324784 ACACTGGTTTTCTTCAGTTTTCC 57.675 39.130 0.00 0.00 41.71 3.13
519 520 7.810759 TGTTTACACTGGTTTTCTTCAGTTTTC 59.189 33.333 0.00 0.00 41.71 2.29
520 521 7.662897 TGTTTACACTGGTTTTCTTCAGTTTT 58.337 30.769 0.00 0.00 41.71 2.43
521 522 7.222000 TGTTTACACTGGTTTTCTTCAGTTT 57.778 32.000 0.00 0.00 41.71 2.66
522 523 6.827586 TGTTTACACTGGTTTTCTTCAGTT 57.172 33.333 0.00 0.00 41.71 3.16
523 524 6.207810 TGTTGTTTACACTGGTTTTCTTCAGT 59.792 34.615 0.00 0.00 44.12 3.41
524 525 6.616947 TGTTGTTTACACTGGTTTTCTTCAG 58.383 36.000 0.00 0.00 37.07 3.02
525 526 6.576662 TGTTGTTTACACTGGTTTTCTTCA 57.423 33.333 0.00 0.00 0.00 3.02
526 527 7.876896 TTTGTTGTTTACACTGGTTTTCTTC 57.123 32.000 0.00 0.00 36.21 2.87
527 528 9.930693 TTATTTGTTGTTTACACTGGTTTTCTT 57.069 25.926 0.00 0.00 36.21 2.52
528 529 9.930693 TTTATTTGTTGTTTACACTGGTTTTCT 57.069 25.926 0.00 0.00 36.21 2.52
532 533 9.877178 TGATTTTATTTGTTGTTTACACTGGTT 57.123 25.926 0.00 0.00 36.21 3.67
533 534 9.877178 TTGATTTTATTTGTTGTTTACACTGGT 57.123 25.926 0.00 0.00 36.21 4.00
565 566 7.612633 TGTAGGTCTGGTTTTCTAGTTGTTTTT 59.387 33.333 0.00 0.00 0.00 1.94
566 567 7.066645 GTGTAGGTCTGGTTTTCTAGTTGTTTT 59.933 37.037 0.00 0.00 0.00 2.43
567 568 6.541278 GTGTAGGTCTGGTTTTCTAGTTGTTT 59.459 38.462 0.00 0.00 0.00 2.83
568 569 6.053650 GTGTAGGTCTGGTTTTCTAGTTGTT 58.946 40.000 0.00 0.00 0.00 2.83
569 570 5.608449 GTGTAGGTCTGGTTTTCTAGTTGT 58.392 41.667 0.00 0.00 0.00 3.32
570 571 4.684703 CGTGTAGGTCTGGTTTTCTAGTTG 59.315 45.833 0.00 0.00 0.00 3.16
571 572 4.586001 TCGTGTAGGTCTGGTTTTCTAGTT 59.414 41.667 0.00 0.00 0.00 2.24
572 573 4.147321 TCGTGTAGGTCTGGTTTTCTAGT 58.853 43.478 0.00 0.00 0.00 2.57
573 574 4.778534 TCGTGTAGGTCTGGTTTTCTAG 57.221 45.455 0.00 0.00 0.00 2.43
574 575 4.262164 GGTTCGTGTAGGTCTGGTTTTCTA 60.262 45.833 0.00 0.00 0.00 2.10
575 576 3.493873 GGTTCGTGTAGGTCTGGTTTTCT 60.494 47.826 0.00 0.00 0.00 2.52
576 577 2.804527 GGTTCGTGTAGGTCTGGTTTTC 59.195 50.000 0.00 0.00 0.00 2.29
577 578 2.436911 AGGTTCGTGTAGGTCTGGTTTT 59.563 45.455 0.00 0.00 0.00 2.43
578 579 2.044758 AGGTTCGTGTAGGTCTGGTTT 58.955 47.619 0.00 0.00 0.00 3.27
579 580 1.713297 AGGTTCGTGTAGGTCTGGTT 58.287 50.000 0.00 0.00 0.00 3.67
580 581 2.165998 GTAGGTTCGTGTAGGTCTGGT 58.834 52.381 0.00 0.00 0.00 4.00
581 582 2.163815 CTGTAGGTTCGTGTAGGTCTGG 59.836 54.545 0.00 0.00 0.00 3.86
582 583 2.415625 GCTGTAGGTTCGTGTAGGTCTG 60.416 54.545 0.00 0.00 0.00 3.51
583 584 1.817447 GCTGTAGGTTCGTGTAGGTCT 59.183 52.381 0.00 0.00 0.00 3.85
584 585 1.467035 CGCTGTAGGTTCGTGTAGGTC 60.467 57.143 0.00 0.00 0.00 3.85
585 586 0.524862 CGCTGTAGGTTCGTGTAGGT 59.475 55.000 0.00 0.00 0.00 3.08
586 587 0.806868 TCGCTGTAGGTTCGTGTAGG 59.193 55.000 0.00 0.00 0.00 3.18
587 588 2.161012 TCTTCGCTGTAGGTTCGTGTAG 59.839 50.000 0.00 0.00 0.00 2.74
588 589 2.153645 TCTTCGCTGTAGGTTCGTGTA 58.846 47.619 0.00 0.00 0.00 2.90
589 590 0.956633 TCTTCGCTGTAGGTTCGTGT 59.043 50.000 0.00 0.00 0.00 4.49
590 591 2.060326 TTCTTCGCTGTAGGTTCGTG 57.940 50.000 0.00 0.00 0.00 4.35
591 592 2.806608 TTTCTTCGCTGTAGGTTCGT 57.193 45.000 0.00 0.00 0.00 3.85
592 593 5.773239 TTATTTTCTTCGCTGTAGGTTCG 57.227 39.130 0.00 0.00 0.00 3.95
645 646 8.604890 CGGTTTTGTTTGCTTTTCCTTTATTTA 58.395 29.630 0.00 0.00 0.00 1.40
646 647 7.334671 TCGGTTTTGTTTGCTTTTCCTTTATTT 59.665 29.630 0.00 0.00 0.00 1.40
647 648 6.819146 TCGGTTTTGTTTGCTTTTCCTTTATT 59.181 30.769 0.00 0.00 0.00 1.40
648 649 6.342111 TCGGTTTTGTTTGCTTTTCCTTTAT 58.658 32.000 0.00 0.00 0.00 1.40
649 650 5.721232 TCGGTTTTGTTTGCTTTTCCTTTA 58.279 33.333 0.00 0.00 0.00 1.85
650 651 4.570930 TCGGTTTTGTTTGCTTTTCCTTT 58.429 34.783 0.00 0.00 0.00 3.11
651 652 4.195225 TCGGTTTTGTTTGCTTTTCCTT 57.805 36.364 0.00 0.00 0.00 3.36
652 653 3.878160 TCGGTTTTGTTTGCTTTTCCT 57.122 38.095 0.00 0.00 0.00 3.36
653 654 4.116238 TCATCGGTTTTGTTTGCTTTTCC 58.884 39.130 0.00 0.00 0.00 3.13
654 655 5.710613 TTCATCGGTTTTGTTTGCTTTTC 57.289 34.783 0.00 0.00 0.00 2.29
655 656 6.487689 TTTTCATCGGTTTTGTTTGCTTTT 57.512 29.167 0.00 0.00 0.00 2.27
656 657 6.487689 TTTTTCATCGGTTTTGTTTGCTTT 57.512 29.167 0.00 0.00 0.00 3.51
729 730 2.613506 CCGCACTGTCGGGTTTTCC 61.614 63.158 9.78 0.00 45.38 3.13
730 731 2.943653 CCGCACTGTCGGGTTTTC 59.056 61.111 9.78 0.00 45.38 2.29
737 738 2.125912 CTTCCCTCCGCACTGTCG 60.126 66.667 0.00 0.00 0.00 4.35
738 739 1.827399 TTCCTTCCCTCCGCACTGTC 61.827 60.000 0.00 0.00 0.00 3.51
739 740 1.841556 TTCCTTCCCTCCGCACTGT 60.842 57.895 0.00 0.00 0.00 3.55
740 741 1.376037 GTTCCTTCCCTCCGCACTG 60.376 63.158 0.00 0.00 0.00 3.66
741 742 2.593956 GGTTCCTTCCCTCCGCACT 61.594 63.158 0.00 0.00 0.00 4.40
742 743 2.046217 GGTTCCTTCCCTCCGCAC 60.046 66.667 0.00 0.00 0.00 5.34
743 744 2.203938 AGGTTCCTTCCCTCCGCA 60.204 61.111 0.00 0.00 0.00 5.69
744 745 2.585153 GAGGTTCCTTCCCTCCGC 59.415 66.667 0.00 0.00 42.29 5.54
745 746 2.893398 CGAGGTTCCTTCCCTCCG 59.107 66.667 0.00 0.00 44.75 4.63
746 747 0.686769 TAGCGAGGTTCCTTCCCTCC 60.687 60.000 0.00 0.00 44.75 4.30
747 748 0.460722 GTAGCGAGGTTCCTTCCCTC 59.539 60.000 0.00 0.00 44.24 4.30
748 749 0.041386 AGTAGCGAGGTTCCTTCCCT 59.959 55.000 0.00 0.00 34.11 4.20
749 750 0.175989 CAGTAGCGAGGTTCCTTCCC 59.824 60.000 0.00 0.00 0.00 3.97
750 751 0.175989 CCAGTAGCGAGGTTCCTTCC 59.824 60.000 0.00 0.00 0.00 3.46
751 752 0.175989 CCCAGTAGCGAGGTTCCTTC 59.824 60.000 0.00 0.00 0.00 3.46
752 753 0.544595 ACCCAGTAGCGAGGTTCCTT 60.545 55.000 0.00 0.00 0.00 3.36
753 754 1.078710 ACCCAGTAGCGAGGTTCCT 59.921 57.895 0.00 0.00 0.00 3.36
754 755 1.218316 CACCCAGTAGCGAGGTTCC 59.782 63.158 0.00 0.00 0.00 3.62
755 756 1.218316 CCACCCAGTAGCGAGGTTC 59.782 63.158 0.00 0.00 0.00 3.62
756 757 2.291043 CCCACCCAGTAGCGAGGTT 61.291 63.158 0.00 0.00 0.00 3.50
757 758 2.683933 CCCACCCAGTAGCGAGGT 60.684 66.667 0.00 0.00 0.00 3.85
758 759 2.683933 ACCCACCCAGTAGCGAGG 60.684 66.667 0.00 0.00 0.00 4.63
759 760 2.893398 GACCCACCCAGTAGCGAG 59.107 66.667 0.00 0.00 0.00 5.03
760 761 3.066190 CGACCCACCCAGTAGCGA 61.066 66.667 0.00 0.00 0.00 4.93
761 762 4.143333 CCGACCCACCCAGTAGCG 62.143 72.222 0.00 0.00 0.00 4.26
762 763 4.468689 GCCGACCCACCCAGTAGC 62.469 72.222 0.00 0.00 0.00 3.58
763 764 3.782443 GGCCGACCCACCCAGTAG 61.782 72.222 0.00 0.00 0.00 2.57
764 765 4.326227 AGGCCGACCCACCCAGTA 62.326 66.667 0.00 0.00 36.11 2.74
766 767 3.976490 TAGAGGCCGACCCACCCAG 62.976 68.421 0.00 0.00 36.11 4.45
767 768 4.000620 TAGAGGCCGACCCACCCA 62.001 66.667 0.00 0.00 36.11 4.51
768 769 3.468140 GTAGAGGCCGACCCACCC 61.468 72.222 0.00 0.00 36.11 4.61
769 770 2.682494 TGTAGAGGCCGACCCACC 60.682 66.667 0.00 0.00 36.11 4.61
770 771 2.893398 CTGTAGAGGCCGACCCAC 59.107 66.667 0.00 0.00 36.11 4.61
771 772 3.075005 GCTGTAGAGGCCGACCCA 61.075 66.667 0.00 0.00 36.11 4.51
772 773 4.208686 CGCTGTAGAGGCCGACCC 62.209 72.222 0.00 0.00 36.11 4.46
773 774 4.874977 GCGCTGTAGAGGCCGACC 62.875 72.222 0.00 0.00 0.00 4.79
800 801 2.420022 TCTTCTTAATGCAGCCGAAAGC 59.580 45.455 0.00 0.00 44.25 3.51
801 802 4.406943 GTTCTTCTTAATGCAGCCGAAAG 58.593 43.478 0.00 0.00 0.00 2.62
802 803 3.190535 GGTTCTTCTTAATGCAGCCGAAA 59.809 43.478 0.00 0.00 0.00 3.46
803 804 2.747446 GGTTCTTCTTAATGCAGCCGAA 59.253 45.455 0.00 0.00 0.00 4.30
804 805 2.290008 TGGTTCTTCTTAATGCAGCCGA 60.290 45.455 0.00 0.00 0.00 5.54
805 806 2.083774 TGGTTCTTCTTAATGCAGCCG 58.916 47.619 0.00 0.00 0.00 5.52
806 807 4.640201 TGTATGGTTCTTCTTAATGCAGCC 59.360 41.667 0.00 0.00 0.00 4.85
807 808 5.818136 TGTATGGTTCTTCTTAATGCAGC 57.182 39.130 0.00 0.00 0.00 5.25
808 809 7.255035 CCTGATGTATGGTTCTTCTTAATGCAG 60.255 40.741 0.00 0.00 0.00 4.41
809 810 6.543465 CCTGATGTATGGTTCTTCTTAATGCA 59.457 38.462 0.00 0.00 0.00 3.96
810 811 6.543831 ACCTGATGTATGGTTCTTCTTAATGC 59.456 38.462 0.00 0.00 31.62 3.56
811 812 7.012704 CCACCTGATGTATGGTTCTTCTTAATG 59.987 40.741 0.00 0.00 33.75 1.90
812 813 7.056635 CCACCTGATGTATGGTTCTTCTTAAT 58.943 38.462 0.00 0.00 33.75 1.40
813 814 6.414732 CCACCTGATGTATGGTTCTTCTTAA 58.585 40.000 0.00 0.00 33.75 1.85
814 815 5.104527 CCCACCTGATGTATGGTTCTTCTTA 60.105 44.000 0.00 0.00 33.75 2.10
815 816 4.324563 CCCACCTGATGTATGGTTCTTCTT 60.325 45.833 0.00 0.00 33.75 2.52
816 817 3.200825 CCCACCTGATGTATGGTTCTTCT 59.799 47.826 0.00 0.00 33.75 2.85
817 818 3.545703 CCCACCTGATGTATGGTTCTTC 58.454 50.000 0.00 0.00 33.75 2.87
818 819 2.357154 GCCCACCTGATGTATGGTTCTT 60.357 50.000 0.00 0.00 33.75 2.52
819 820 1.212935 GCCCACCTGATGTATGGTTCT 59.787 52.381 0.00 0.00 33.75 3.01
820 821 1.680338 GCCCACCTGATGTATGGTTC 58.320 55.000 0.00 0.00 33.75 3.62
821 822 0.258774 GGCCCACCTGATGTATGGTT 59.741 55.000 0.00 0.00 33.75 3.67
842 843 1.049289 AAGGTACGGGCCCAGATCTC 61.049 60.000 24.92 5.63 0.00 2.75
859 860 6.683715 TCTTATCGGTTTTGGGCTTAAAAAG 58.316 36.000 2.66 0.00 31.92 2.27
863 864 3.692593 GCTCTTATCGGTTTTGGGCTTAA 59.307 43.478 0.00 0.00 0.00 1.85
864 865 3.275999 GCTCTTATCGGTTTTGGGCTTA 58.724 45.455 0.00 0.00 0.00 3.09
879 880 6.472887 GTTATATACAATGGCTGGGCTCTTA 58.527 40.000 0.00 0.00 0.00 2.10
903 904 2.359975 GGCGTTCCTCAGGTTGGG 60.360 66.667 0.00 0.00 0.00 4.12
920 921 4.697756 TTGCGTTGAGGAGCGGGG 62.698 66.667 0.00 0.00 35.87 5.73
1038 1039 3.749064 GCCAGAGTCTCCGCGTCA 61.749 66.667 4.92 0.00 0.00 4.35
1376 1393 3.562108 TCTTCCCCTTGGTACTCTTCT 57.438 47.619 0.00 0.00 0.00 2.85
1664 1682 0.960364 ACCGCTCATCGTGCCAAAAT 60.960 50.000 0.00 0.00 36.19 1.82
1712 1730 6.036517 GTCAGCAACTCACATATTCTAACCAG 59.963 42.308 0.00 0.00 0.00 4.00
1856 1874 2.129785 GCATGGCCCTCACCAATCC 61.130 63.158 0.00 0.00 44.65 3.01
1931 1949 9.534565 CTATTCCAAGATTAAAGATCTCGTCAA 57.465 33.333 0.00 0.00 0.00 3.18
2010 2028 5.433526 TCTACAAAGTAATCCCAAATCCGG 58.566 41.667 0.00 0.00 0.00 5.14
2011 2029 7.282224 TGAATCTACAAAGTAATCCCAAATCCG 59.718 37.037 0.00 0.00 0.00 4.18
2041 2059 5.652014 TCCTGCAAGACATATTTTTACAGGG 59.348 40.000 0.00 0.00 41.94 4.45
2044 2062 7.701539 ACATCCTGCAAGACATATTTTTACA 57.298 32.000 0.00 0.00 34.07 2.41
2178 2196 7.155328 TCCAAGAAATTTAGGATAGATCGCTC 58.845 38.462 0.00 0.00 0.00 5.03
2211 2229 7.597743 TGATCTAGACCGAAAGAACAGTAAAAC 59.402 37.037 0.00 0.00 0.00 2.43
2237 2255 6.423182 AGGTAAAGTGTGTAATGGTGCATAT 58.577 36.000 0.00 0.00 0.00 1.78
2290 2367 6.447162 TCACCAGCTCAGTCAATTATATACG 58.553 40.000 0.00 0.00 0.00 3.06
2465 2542 5.551305 TCAACAAAGAGTGGAGATCAGAA 57.449 39.130 0.00 0.00 0.00 3.02
2466 2543 5.551305 TTCAACAAAGAGTGGAGATCAGA 57.449 39.130 0.00 0.00 30.08 3.27
2509 2586 3.895041 TCATCACTTGCGGTATCATCCTA 59.105 43.478 0.00 0.00 0.00 2.94
2534 2611 2.020832 CGAATTTGCGTACGGGCG 59.979 61.111 18.39 0.00 35.06 6.13
2612 2689 4.223144 ACCCAGCCAGTTACTTGAATTTT 58.777 39.130 0.00 0.00 0.00 1.82
2615 2692 4.862641 ATACCCAGCCAGTTACTTGAAT 57.137 40.909 0.00 0.00 0.00 2.57
2623 2700 5.432060 AGGATTAGTTTATACCCAGCCAGTT 59.568 40.000 0.00 0.00 0.00 3.16
2635 2712 8.416329 GCCACATCAAATTCAGGATTAGTTTAT 58.584 33.333 0.00 0.00 0.00 1.40
2646 2723 2.426024 CCTCCTGCCACATCAAATTCAG 59.574 50.000 0.00 0.00 0.00 3.02
2690 2767 2.694616 ACCCTAGGTTTTGCCAACAT 57.305 45.000 8.29 0.00 40.61 2.71
3003 3080 9.280174 ACGGAAGTAATCTGAATTTGTTCTTTA 57.720 29.630 0.00 0.00 46.88 1.85
3052 3130 2.853705 ACTGAGAGGATAGTAGTCCGC 58.146 52.381 0.00 0.00 43.27 5.54
3084 3162 6.707440 TGACAGTCTCTCTTCCATTATCTC 57.293 41.667 1.31 0.00 0.00 2.75
3165 3244 1.512926 CTTGTCGTGCTGCTACCTTT 58.487 50.000 0.00 0.00 0.00 3.11
3180 3259 2.980233 GCTGGCGGAACTGCTTGT 60.980 61.111 0.00 0.00 34.52 3.16
3182 3261 2.359230 GAGCTGGCGGAACTGCTT 60.359 61.111 0.00 0.00 44.24 3.91
3280 3360 2.550830 AGAAACACTCGGCACATTCT 57.449 45.000 0.00 0.00 0.00 2.40
3285 3365 3.119955 GGGAATTTAGAAACACTCGGCAC 60.120 47.826 0.00 0.00 0.00 5.01
3286 3366 3.078837 GGGAATTTAGAAACACTCGGCA 58.921 45.455 0.00 0.00 0.00 5.69
3287 3367 3.344515 AGGGAATTTAGAAACACTCGGC 58.655 45.455 0.00 0.00 0.00 5.54
3288 3368 5.390567 CGAAAGGGAATTTAGAAACACTCGG 60.391 44.000 0.00 0.00 0.00 4.63
3289 3369 5.407387 TCGAAAGGGAATTTAGAAACACTCG 59.593 40.000 0.00 0.00 30.63 4.18
3290 3370 6.796705 TCGAAAGGGAATTTAGAAACACTC 57.203 37.500 0.00 0.00 30.63 3.51
3340 3430 2.034685 GGTTTTGGACTCTTTGGCACTC 59.965 50.000 0.00 0.00 0.00 3.51
3475 3566 5.751586 TCCCTGTACAAAGAAGAAAACAGT 58.248 37.500 0.00 0.00 34.02 3.55
3500 3591 5.118990 CGGATTCTCCTTAAGCAATTCTGA 58.881 41.667 0.00 0.00 33.30 3.27
3594 3688 7.834181 AGTCTAAAGCTTATTTGGCATAAAGGA 59.166 33.333 0.00 0.00 0.00 3.36
3647 3741 3.186909 CAACAATCGATTCGAGCCTACA 58.813 45.455 14.81 0.00 39.91 2.74
3648 3742 3.000322 CACAACAATCGATTCGAGCCTAC 60.000 47.826 14.81 0.00 39.91 3.18
3649 3743 3.186909 CACAACAATCGATTCGAGCCTA 58.813 45.455 14.81 0.00 39.91 3.93
3650 3744 2.002586 CACAACAATCGATTCGAGCCT 58.997 47.619 14.81 0.00 39.91 4.58
3651 3745 1.062587 CCACAACAATCGATTCGAGCC 59.937 52.381 14.81 0.00 39.91 4.70
3653 3747 2.348666 GGACCACAACAATCGATTCGAG 59.651 50.000 14.81 4.43 39.91 4.04
3654 3748 2.343101 GGACCACAACAATCGATTCGA 58.657 47.619 11.73 11.73 41.13 3.71
3655 3749 1.060553 CGGACCACAACAATCGATTCG 59.939 52.381 7.92 6.84 0.00 3.34
3656 3750 2.073816 ACGGACCACAACAATCGATTC 58.926 47.619 7.92 0.00 0.00 2.52
3657 3751 1.804151 CACGGACCACAACAATCGATT 59.196 47.619 4.39 4.39 0.00 3.34
3658 3752 1.270625 ACACGGACCACAACAATCGAT 60.271 47.619 0.00 0.00 0.00 3.59
3671 3765 5.224888 TCAATCAAACTAGTGTACACGGAC 58.775 41.667 19.93 0.00 36.20 4.79
3725 3819 6.795399 ACAATTCGTGACAAAACTGAAGATT 58.205 32.000 0.00 0.00 0.00 2.40
3726 3820 6.377327 ACAATTCGTGACAAAACTGAAGAT 57.623 33.333 0.00 0.00 0.00 2.40
3728 3822 6.027131 TCAACAATTCGTGACAAAACTGAAG 58.973 36.000 0.00 0.00 0.00 3.02
3730 3824 5.448496 CCTCAACAATTCGTGACAAAACTGA 60.448 40.000 0.00 0.00 0.00 3.41
3732 3826 4.638421 TCCTCAACAATTCGTGACAAAACT 59.362 37.500 0.00 0.00 0.00 2.66
3733 3827 4.915704 TCCTCAACAATTCGTGACAAAAC 58.084 39.130 0.00 0.00 0.00 2.43
3737 3831 4.271696 AGATCCTCAACAATTCGTGACA 57.728 40.909 0.00 0.00 0.00 3.58
3738 3832 4.452455 ACAAGATCCTCAACAATTCGTGAC 59.548 41.667 0.00 0.00 0.00 3.67
3739 3833 4.641396 ACAAGATCCTCAACAATTCGTGA 58.359 39.130 0.00 0.00 0.00 4.35
3792 3899 6.815089 TGGCAAGATCAAATTACTTTGTGTT 58.185 32.000 5.56 0.00 42.02 3.32
3793 3900 6.403866 TGGCAAGATCAAATTACTTTGTGT 57.596 33.333 5.56 0.00 42.02 3.72
3854 3962 3.997021 GACAACGATTTGACATCTCTGGT 59.003 43.478 0.00 0.00 36.48 4.00
3872 3980 1.179152 TAATCGGGCTGTCTCGACAA 58.821 50.000 1.02 0.00 41.33 3.18
4147 4276 1.708027 CATCGGTTTCGTCGCCTTC 59.292 57.895 0.00 0.00 37.69 3.46
4149 4278 2.813908 GCATCGGTTTCGTCGCCT 60.814 61.111 0.00 0.00 37.69 5.52
4150 4279 3.861263 GGCATCGGTTTCGTCGCC 61.861 66.667 0.00 0.00 43.26 5.54
4220 4349 2.351336 GATACGTCCCGTCCTGCCTG 62.351 65.000 0.00 0.00 41.54 4.85
4221 4350 2.043248 ATACGTCCCGTCCTGCCT 60.043 61.111 0.00 0.00 41.54 4.75
4222 4351 2.351336 CTGATACGTCCCGTCCTGCC 62.351 65.000 0.00 0.00 41.54 4.85
4235 4364 3.064207 TGAGTTTTCACACGCCTGATAC 58.936 45.455 0.00 0.00 0.00 2.24
4236 4365 3.394674 TGAGTTTTCACACGCCTGATA 57.605 42.857 0.00 0.00 0.00 2.15
4248 4377 1.981256 TCTTGGGCCTGTGAGTTTTC 58.019 50.000 4.53 0.00 0.00 2.29
4270 4410 2.589407 CGCACGCACACAAATTATTCAG 59.411 45.455 0.00 0.00 0.00 3.02
4330 4507 6.798427 TTAACTCAGCAAGATGGAGAGTAT 57.202 37.500 0.00 0.00 38.51 2.12
4331 4508 6.798427 ATTAACTCAGCAAGATGGAGAGTA 57.202 37.500 0.00 0.00 38.51 2.59
4354 4531 8.231837 GGTTTCGTTCATGCTTGTTATAGTTAA 58.768 33.333 0.00 0.00 0.00 2.01
4355 4532 7.412129 CGGTTTCGTTCATGCTTGTTATAGTTA 60.412 37.037 0.00 0.00 0.00 2.24
4356 4533 6.608610 GGTTTCGTTCATGCTTGTTATAGTT 58.391 36.000 0.00 0.00 0.00 2.24
4357 4534 5.163893 CGGTTTCGTTCATGCTTGTTATAGT 60.164 40.000 0.00 0.00 0.00 2.12
4358 4535 5.255596 CGGTTTCGTTCATGCTTGTTATAG 58.744 41.667 0.00 0.00 0.00 1.31
4359 4536 5.211266 CGGTTTCGTTCATGCTTGTTATA 57.789 39.130 0.00 0.00 0.00 0.98
4360 4537 4.078363 CGGTTTCGTTCATGCTTGTTAT 57.922 40.909 0.00 0.00 0.00 1.89
4400 4862 1.001706 CCGCTATCTGAATCCGAACGA 60.002 52.381 0.00 0.00 0.00 3.85
4406 4868 1.953559 TTGCACCGCTATCTGAATCC 58.046 50.000 0.00 0.00 0.00 3.01
4431 4893 3.851051 TGCTGATGCATTGTACGGA 57.149 47.368 0.00 0.00 45.31 4.69
4441 4903 4.194720 GCTGCCTGCTGCTGATGC 62.195 66.667 12.97 4.61 41.11 3.91
4442 4904 2.750237 TGCTGCCTGCTGCTGATG 60.750 61.111 19.48 0.00 41.11 3.07
4443 4905 2.438614 CTGCTGCCTGCTGCTGAT 60.439 61.111 19.48 0.00 41.11 2.90
4463 4925 1.469251 CCTTGATCCTGTCGTGTACCG 60.469 57.143 0.00 0.00 38.13 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.