Multiple sequence alignment - TraesCS6B01G194100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G194100 chr6B 100.000 3416 0 0 1 3416 228979959 228976544 0.000000e+00 6309.0
1 TraesCS6B01G194100 chr6A 91.760 1432 63 21 2024 3414 169523639 169522222 0.000000e+00 1940.0
2 TraesCS6B01G194100 chr6A 86.912 1467 90 48 595 2025 169525068 169523668 0.000000e+00 1552.0
3 TraesCS6B01G194100 chr6D 92.632 760 44 5 2667 3416 131610831 131610074 0.000000e+00 1083.0
4 TraesCS6B01G194100 chr6D 89.960 747 38 13 697 1438 131612640 131611926 0.000000e+00 929.0
5 TraesCS6B01G194100 chr6D 88.560 507 37 10 2024 2529 131611310 131610824 2.270000e-166 595.0
6 TraesCS6B01G194100 chr6D 92.606 284 13 6 1748 2025 131611620 131611339 5.310000e-108 401.0
7 TraesCS6B01G194100 chr6D 92.996 257 9 3 1491 1747 131611907 131611660 1.940000e-97 366.0
8 TraesCS6B01G194100 chr6D 81.481 162 25 5 426 582 22245025 22244864 9.950000e-26 128.0
9 TraesCS6B01G194100 chr2B 98.095 210 4 0 1 210 497880734 497880943 1.940000e-97 366.0
10 TraesCS6B01G194100 chr2B 97.143 210 6 0 1 210 651717929 651718138 4.190000e-94 355.0
11 TraesCS6B01G194100 chr3D 97.156 211 6 0 1 211 608236438 608236648 1.170000e-94 357.0
12 TraesCS6B01G194100 chr3D 83.962 106 16 1 404 508 58510475 58510370 2.170000e-17 100.0
13 TraesCS6B01G194100 chr1B 96.729 214 6 1 1 213 638220761 638220974 4.190000e-94 355.0
14 TraesCS6B01G194100 chr1B 96.729 214 6 1 1 213 638377910 638378123 4.190000e-94 355.0
15 TraesCS6B01G194100 chr1B 97.143 210 6 0 1 210 647932170 647931961 4.190000e-94 355.0
16 TraesCS6B01G194100 chr1B 96.262 214 8 0 1 214 662062969 662063182 5.420000e-93 351.0
17 TraesCS6B01G194100 chr3B 96.296 216 7 1 1 215 767790410 767790195 1.510000e-93 353.0
18 TraesCS6B01G194100 chr3B 84.906 106 15 1 404 508 93881610 93881505 4.660000e-19 106.0
19 TraesCS6B01G194100 chr3B 84.906 106 15 1 404 508 94486126 94486021 4.660000e-19 106.0
20 TraesCS6B01G194100 chr3B 79.503 161 24 5 441 593 125234163 125234322 4.660000e-19 106.0
21 TraesCS6B01G194100 chr7B 96.698 212 6 1 1 212 529151771 529151561 5.420000e-93 351.0
22 TraesCS6B01G194100 chr3A 84.906 106 15 1 404 508 67781791 67781686 4.660000e-19 106.0
23 TraesCS6B01G194100 chr7D 77.640 161 27 5 441 593 128312648 128312489 4.700000e-14 89.8
24 TraesCS6B01G194100 chr7A 85.938 64 4 1 441 499 480230183 480230120 2.850000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G194100 chr6B 228976544 228979959 3415 True 6309.0 6309 100.0000 1 3416 1 chr6B.!!$R1 3415
1 TraesCS6B01G194100 chr6A 169522222 169525068 2846 True 1746.0 1940 89.3360 595 3414 2 chr6A.!!$R1 2819
2 TraesCS6B01G194100 chr6D 131610074 131612640 2566 True 674.8 1083 91.3508 697 3416 5 chr6D.!!$R2 2719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
223 224 0.033991 TTCGAGGAGGGAGAGGTGAG 60.034 60.0 0.00 0.00 0.00 3.51 F
266 267 0.108329 CTCCCGAACAGGCGTATGTT 60.108 55.0 7.03 7.03 45.89 2.71 F
739 740 0.108804 CCCGTGTCGCTGATGTTACT 60.109 55.0 0.00 0.00 0.00 2.24 F
1155 1175 0.322648 ATGTGTGCAGAGTAGCAGCA 59.677 50.0 0.00 0.00 46.69 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1487 1526 0.106708 GTGAGGCGGCCATCTAATGA 59.893 55.0 23.09 0.0 0.00 2.57 R
1488 1527 0.107456 AGTGAGGCGGCCATCTAATG 59.893 55.0 23.09 0.0 0.00 1.90 R
1646 1685 0.462047 GGCTCCGACCCTGTTACATG 60.462 60.0 0.00 0.0 0.00 3.21 R
2540 2683 0.664466 GCAAAAGCTGCCTCCGTTTC 60.664 55.0 0.00 0.0 46.13 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.793060 AAGTGCTAGGAGCGTGGT 58.207 55.556 0.00 0.00 46.26 4.16
18 19 1.293498 AAGTGCTAGGAGCGTGGTG 59.707 57.895 0.00 0.00 46.26 4.17
19 20 2.125512 GTGCTAGGAGCGTGGTGG 60.126 66.667 0.00 0.00 46.26 4.61
20 21 2.283604 TGCTAGGAGCGTGGTGGA 60.284 61.111 0.00 0.00 46.26 4.02
21 22 1.911269 TGCTAGGAGCGTGGTGGAA 60.911 57.895 0.00 0.00 46.26 3.53
22 23 1.295423 GCTAGGAGCGTGGTGGAAA 59.705 57.895 0.00 0.00 0.00 3.13
23 24 0.107654 GCTAGGAGCGTGGTGGAAAT 60.108 55.000 0.00 0.00 0.00 2.17
24 25 1.679032 GCTAGGAGCGTGGTGGAAATT 60.679 52.381 0.00 0.00 0.00 1.82
25 26 2.280628 CTAGGAGCGTGGTGGAAATTC 58.719 52.381 0.00 0.00 0.00 2.17
26 27 0.693049 AGGAGCGTGGTGGAAATTCT 59.307 50.000 0.00 0.00 0.00 2.40
27 28 1.087501 GGAGCGTGGTGGAAATTCTC 58.912 55.000 0.00 0.00 0.00 2.87
28 29 1.087501 GAGCGTGGTGGAAATTCTCC 58.912 55.000 0.00 0.00 45.64 3.71
35 36 3.209812 GGAAATTCTCCGGCGGGC 61.210 66.667 27.98 6.77 33.37 6.13
36 37 3.573491 GAAATTCTCCGGCGGGCG 61.573 66.667 27.98 17.81 0.00 6.13
57 58 3.124921 CGGTTGCGGGTCACCATC 61.125 66.667 0.00 0.00 36.13 3.51
58 59 3.124921 GGTTGCGGGTCACCATCG 61.125 66.667 0.00 0.00 36.13 3.84
59 60 2.358247 GTTGCGGGTCACCATCGT 60.358 61.111 0.00 0.00 36.13 3.73
60 61 1.964373 GTTGCGGGTCACCATCGTT 60.964 57.895 0.00 0.00 36.13 3.85
61 62 1.228003 TTGCGGGTCACCATCGTTT 60.228 52.632 0.00 0.00 36.13 3.60
62 63 0.820074 TTGCGGGTCACCATCGTTTT 60.820 50.000 0.00 0.00 36.13 2.43
63 64 0.820074 TGCGGGTCACCATCGTTTTT 60.820 50.000 0.00 0.00 36.13 1.94
64 65 0.386731 GCGGGTCACCATCGTTTTTG 60.387 55.000 0.00 0.00 36.13 2.44
65 66 0.948678 CGGGTCACCATCGTTTTTGT 59.051 50.000 0.00 0.00 36.13 2.83
66 67 1.069500 CGGGTCACCATCGTTTTTGTC 60.069 52.381 0.00 0.00 36.13 3.18
67 68 1.069500 GGGTCACCATCGTTTTTGTCG 60.069 52.381 0.00 0.00 36.50 4.35
68 69 1.868498 GGTCACCATCGTTTTTGTCGA 59.132 47.619 0.00 0.00 41.45 4.20
69 70 2.349155 GGTCACCATCGTTTTTGTCGAC 60.349 50.000 9.11 9.11 40.07 4.20
70 71 1.868498 TCACCATCGTTTTTGTCGACC 59.132 47.619 14.12 0.00 40.07 4.79
71 72 1.069500 CACCATCGTTTTTGTCGACCC 60.069 52.381 14.12 0.00 40.07 4.46
72 73 0.165079 CCATCGTTTTTGTCGACCCG 59.835 55.000 14.12 7.63 40.07 5.28
73 74 1.141645 CATCGTTTTTGTCGACCCGA 58.858 50.000 14.12 12.63 40.07 5.14
82 83 4.169271 TCGACCCGACTCTGTTGT 57.831 55.556 0.00 0.00 0.00 3.32
83 84 1.954528 TCGACCCGACTCTGTTGTC 59.045 57.895 0.00 0.00 0.00 3.18
84 85 0.820482 TCGACCCGACTCTGTTGTCA 60.820 55.000 0.00 0.00 36.82 3.58
85 86 0.243907 CGACCCGACTCTGTTGTCAT 59.756 55.000 0.00 0.00 36.82 3.06
86 87 1.336887 CGACCCGACTCTGTTGTCATT 60.337 52.381 0.00 0.00 36.82 2.57
87 88 2.094906 CGACCCGACTCTGTTGTCATTA 60.095 50.000 0.00 0.00 36.82 1.90
88 89 3.512680 GACCCGACTCTGTTGTCATTAG 58.487 50.000 0.00 0.00 36.82 1.73
89 90 2.897969 ACCCGACTCTGTTGTCATTAGT 59.102 45.455 0.00 0.00 36.82 2.24
90 91 3.323979 ACCCGACTCTGTTGTCATTAGTT 59.676 43.478 0.00 0.00 36.82 2.24
91 92 4.202326 ACCCGACTCTGTTGTCATTAGTTT 60.202 41.667 0.00 0.00 36.82 2.66
92 93 4.389077 CCCGACTCTGTTGTCATTAGTTTC 59.611 45.833 0.00 0.00 36.82 2.78
93 94 5.230942 CCGACTCTGTTGTCATTAGTTTCT 58.769 41.667 0.00 0.00 36.82 2.52
94 95 5.696724 CCGACTCTGTTGTCATTAGTTTCTT 59.303 40.000 0.00 0.00 36.82 2.52
95 96 6.202954 CCGACTCTGTTGTCATTAGTTTCTTT 59.797 38.462 0.00 0.00 36.82 2.52
96 97 7.254795 CCGACTCTGTTGTCATTAGTTTCTTTT 60.255 37.037 0.00 0.00 36.82 2.27
97 98 8.122952 CGACTCTGTTGTCATTAGTTTCTTTTT 58.877 33.333 0.00 0.00 36.82 1.94
121 122 9.705290 TTTATTTCTCTGTTATTTCTTTTGGGC 57.295 29.630 0.00 0.00 0.00 5.36
122 123 6.976934 TTTCTCTGTTATTTCTTTTGGGCT 57.023 33.333 0.00 0.00 0.00 5.19
123 124 6.976934 TTCTCTGTTATTTCTTTTGGGCTT 57.023 33.333 0.00 0.00 0.00 4.35
124 125 6.575162 TCTCTGTTATTTCTTTTGGGCTTC 57.425 37.500 0.00 0.00 0.00 3.86
125 126 5.476945 TCTCTGTTATTTCTTTTGGGCTTCC 59.523 40.000 0.00 0.00 0.00 3.46
126 127 5.393866 TCTGTTATTTCTTTTGGGCTTCCT 58.606 37.500 0.00 0.00 0.00 3.36
127 128 5.838521 TCTGTTATTTCTTTTGGGCTTCCTT 59.161 36.000 0.00 0.00 0.00 3.36
128 129 5.852827 TGTTATTTCTTTTGGGCTTCCTTG 58.147 37.500 0.00 0.00 0.00 3.61
129 130 5.365314 TGTTATTTCTTTTGGGCTTCCTTGT 59.635 36.000 0.00 0.00 0.00 3.16
130 131 3.817709 TTTCTTTTGGGCTTCCTTGTG 57.182 42.857 0.00 0.00 0.00 3.33
131 132 2.452600 TCTTTTGGGCTTCCTTGTGT 57.547 45.000 0.00 0.00 0.00 3.72
132 133 2.745968 TCTTTTGGGCTTCCTTGTGTT 58.254 42.857 0.00 0.00 0.00 3.32
133 134 2.430332 TCTTTTGGGCTTCCTTGTGTTG 59.570 45.455 0.00 0.00 0.00 3.33
134 135 1.859302 TTTGGGCTTCCTTGTGTTGT 58.141 45.000 0.00 0.00 0.00 3.32
135 136 1.398692 TTGGGCTTCCTTGTGTTGTC 58.601 50.000 0.00 0.00 0.00 3.18
136 137 0.550914 TGGGCTTCCTTGTGTTGTCT 59.449 50.000 0.00 0.00 0.00 3.41
137 138 0.954452 GGGCTTCCTTGTGTTGTCTG 59.046 55.000 0.00 0.00 0.00 3.51
138 139 0.312102 GGCTTCCTTGTGTTGTCTGC 59.688 55.000 0.00 0.00 0.00 4.26
139 140 0.312102 GCTTCCTTGTGTTGTCTGCC 59.688 55.000 0.00 0.00 0.00 4.85
140 141 0.954452 CTTCCTTGTGTTGTCTGCCC 59.046 55.000 0.00 0.00 0.00 5.36
141 142 0.467290 TTCCTTGTGTTGTCTGCCCC 60.467 55.000 0.00 0.00 0.00 5.80
142 143 1.152777 CCTTGTGTTGTCTGCCCCA 60.153 57.895 0.00 0.00 0.00 4.96
143 144 1.174712 CCTTGTGTTGTCTGCCCCAG 61.175 60.000 0.00 0.00 0.00 4.45
144 145 1.799258 CTTGTGTTGTCTGCCCCAGC 61.799 60.000 0.00 0.00 40.48 4.85
153 154 2.364973 TGCCCCAGCATCGGACTA 60.365 61.111 0.00 0.00 46.52 2.59
154 155 1.766059 TGCCCCAGCATCGGACTAT 60.766 57.895 0.00 0.00 46.52 2.12
155 156 1.004440 GCCCCAGCATCGGACTATC 60.004 63.158 0.00 0.00 39.53 2.08
156 157 1.758440 GCCCCAGCATCGGACTATCA 61.758 60.000 0.00 0.00 39.53 2.15
157 158 0.319728 CCCCAGCATCGGACTATCAG 59.680 60.000 0.00 0.00 0.00 2.90
158 159 1.043816 CCCAGCATCGGACTATCAGT 58.956 55.000 0.00 0.00 0.00 3.41
159 160 1.414181 CCCAGCATCGGACTATCAGTT 59.586 52.381 0.00 0.00 0.00 3.16
160 161 2.477825 CCAGCATCGGACTATCAGTTG 58.522 52.381 0.00 0.00 0.00 3.16
161 162 2.159043 CCAGCATCGGACTATCAGTTGT 60.159 50.000 0.00 0.00 0.00 3.32
162 163 3.068165 CCAGCATCGGACTATCAGTTGTA 59.932 47.826 0.00 0.00 0.00 2.41
163 164 4.262207 CCAGCATCGGACTATCAGTTGTAT 60.262 45.833 0.00 0.00 0.00 2.29
164 165 4.920340 CAGCATCGGACTATCAGTTGTATC 59.080 45.833 0.00 0.00 0.00 2.24
165 166 3.914966 GCATCGGACTATCAGTTGTATCG 59.085 47.826 0.00 0.00 0.00 2.92
166 167 4.556898 GCATCGGACTATCAGTTGTATCGT 60.557 45.833 0.00 0.00 0.00 3.73
167 168 4.547406 TCGGACTATCAGTTGTATCGTG 57.453 45.455 0.00 0.00 0.00 4.35
168 169 3.943381 TCGGACTATCAGTTGTATCGTGT 59.057 43.478 0.00 0.00 0.00 4.49
169 170 4.035684 CGGACTATCAGTTGTATCGTGTG 58.964 47.826 0.00 0.00 0.00 3.82
170 171 4.360563 GGACTATCAGTTGTATCGTGTGG 58.639 47.826 0.00 0.00 0.00 4.17
171 172 4.142227 GGACTATCAGTTGTATCGTGTGGT 60.142 45.833 0.00 0.00 0.00 4.16
172 173 5.401531 ACTATCAGTTGTATCGTGTGGTT 57.598 39.130 0.00 0.00 0.00 3.67
173 174 5.168569 ACTATCAGTTGTATCGTGTGGTTG 58.831 41.667 0.00 0.00 0.00 3.77
174 175 2.139917 TCAGTTGTATCGTGTGGTTGC 58.860 47.619 0.00 0.00 0.00 4.17
175 176 2.143122 CAGTTGTATCGTGTGGTTGCT 58.857 47.619 0.00 0.00 0.00 3.91
176 177 3.006003 TCAGTTGTATCGTGTGGTTGCTA 59.994 43.478 0.00 0.00 0.00 3.49
177 178 3.932710 CAGTTGTATCGTGTGGTTGCTAT 59.067 43.478 0.00 0.00 0.00 2.97
178 179 5.105675 TCAGTTGTATCGTGTGGTTGCTATA 60.106 40.000 0.00 0.00 0.00 1.31
179 180 5.753438 CAGTTGTATCGTGTGGTTGCTATAT 59.247 40.000 0.00 0.00 0.00 0.86
180 181 5.983720 AGTTGTATCGTGTGGTTGCTATATC 59.016 40.000 0.00 0.00 0.00 1.63
181 182 5.784578 TGTATCGTGTGGTTGCTATATCT 57.215 39.130 0.00 0.00 0.00 1.98
182 183 6.887626 TGTATCGTGTGGTTGCTATATCTA 57.112 37.500 0.00 0.00 0.00 1.98
183 184 7.462571 TGTATCGTGTGGTTGCTATATCTAT 57.537 36.000 0.00 0.00 0.00 1.98
184 185 8.570068 TGTATCGTGTGGTTGCTATATCTATA 57.430 34.615 0.00 0.00 0.00 1.31
185 186 9.185680 TGTATCGTGTGGTTGCTATATCTATAT 57.814 33.333 0.00 0.00 0.00 0.86
199 200 3.955650 TCTATATAGCGGGGTGAAAGC 57.044 47.619 4.75 0.00 0.00 3.51
200 201 7.524038 CTATATCTATATAGCGGGGTGAAAGCC 60.524 44.444 4.75 0.00 43.36 4.35
211 212 3.261981 GGTGAAAGCCTATTTCGAGGA 57.738 47.619 0.00 0.00 39.15 3.71
212 213 3.198872 GGTGAAAGCCTATTTCGAGGAG 58.801 50.000 0.00 0.00 39.15 3.69
213 214 3.198872 GTGAAAGCCTATTTCGAGGAGG 58.801 50.000 5.25 5.25 39.15 4.30
214 215 2.170607 TGAAAGCCTATTTCGAGGAGGG 59.829 50.000 10.35 2.71 39.15 4.30
215 216 2.176247 AAGCCTATTTCGAGGAGGGA 57.824 50.000 10.35 0.00 39.15 4.20
216 217 1.710816 AGCCTATTTCGAGGAGGGAG 58.289 55.000 10.35 0.00 39.15 4.30
217 218 1.218196 AGCCTATTTCGAGGAGGGAGA 59.782 52.381 10.35 0.00 39.15 3.71
218 219 1.616374 GCCTATTTCGAGGAGGGAGAG 59.384 57.143 10.35 0.00 39.15 3.20
219 220 2.243810 CCTATTTCGAGGAGGGAGAGG 58.756 57.143 2.22 0.00 39.15 3.69
220 221 2.425102 CCTATTTCGAGGAGGGAGAGGT 60.425 54.545 2.22 0.00 39.15 3.85
221 222 1.490574 ATTTCGAGGAGGGAGAGGTG 58.509 55.000 0.00 0.00 0.00 4.00
222 223 0.408309 TTTCGAGGAGGGAGAGGTGA 59.592 55.000 0.00 0.00 0.00 4.02
223 224 0.033991 TTCGAGGAGGGAGAGGTGAG 60.034 60.000 0.00 0.00 0.00 3.51
224 225 1.208844 TCGAGGAGGGAGAGGTGAGT 61.209 60.000 0.00 0.00 0.00 3.41
225 226 0.547075 CGAGGAGGGAGAGGTGAGTA 59.453 60.000 0.00 0.00 0.00 2.59
226 227 1.476110 CGAGGAGGGAGAGGTGAGTAG 60.476 61.905 0.00 0.00 0.00 2.57
227 228 1.847737 GAGGAGGGAGAGGTGAGTAGA 59.152 57.143 0.00 0.00 0.00 2.59
228 229 2.242708 GAGGAGGGAGAGGTGAGTAGAA 59.757 54.545 0.00 0.00 0.00 2.10
229 230 2.243736 AGGAGGGAGAGGTGAGTAGAAG 59.756 54.545 0.00 0.00 0.00 2.85
230 231 2.242708 GGAGGGAGAGGTGAGTAGAAGA 59.757 54.545 0.00 0.00 0.00 2.87
231 232 3.551846 GAGGGAGAGGTGAGTAGAAGAG 58.448 54.545 0.00 0.00 0.00 2.85
232 233 2.243736 AGGGAGAGGTGAGTAGAAGAGG 59.756 54.545 0.00 0.00 0.00 3.69
233 234 2.024751 GGGAGAGGTGAGTAGAAGAGGT 60.025 54.545 0.00 0.00 0.00 3.85
234 235 3.020984 GGAGAGGTGAGTAGAAGAGGTG 58.979 54.545 0.00 0.00 0.00 4.00
235 236 2.425668 GAGAGGTGAGTAGAAGAGGTGC 59.574 54.545 0.00 0.00 0.00 5.01
236 237 1.478916 GAGGTGAGTAGAAGAGGTGCC 59.521 57.143 0.00 0.00 0.00 5.01
237 238 1.077993 AGGTGAGTAGAAGAGGTGCCT 59.922 52.381 0.00 0.00 0.00 4.75
238 239 1.205893 GGTGAGTAGAAGAGGTGCCTG 59.794 57.143 0.00 0.00 0.00 4.85
239 240 2.171840 GTGAGTAGAAGAGGTGCCTGA 58.828 52.381 0.00 0.00 0.00 3.86
240 241 2.165437 GTGAGTAGAAGAGGTGCCTGAG 59.835 54.545 0.00 0.00 0.00 3.35
241 242 1.754226 GAGTAGAAGAGGTGCCTGAGG 59.246 57.143 0.00 0.00 0.00 3.86
256 257 2.285368 AGGCATCCCTCCCGAACA 60.285 61.111 0.00 0.00 36.46 3.18
257 258 2.190578 GGCATCCCTCCCGAACAG 59.809 66.667 0.00 0.00 0.00 3.16
258 259 2.190578 GCATCCCTCCCGAACAGG 59.809 66.667 0.00 0.00 40.63 4.00
259 260 2.190578 CATCCCTCCCGAACAGGC 59.809 66.667 0.00 0.00 39.21 4.85
260 261 3.470888 ATCCCTCCCGAACAGGCG 61.471 66.667 0.00 0.00 39.21 5.52
262 263 2.866523 ATCCCTCCCGAACAGGCGTA 62.867 60.000 0.00 0.00 39.21 4.42
263 264 2.432300 CCCTCCCGAACAGGCGTAT 61.432 63.158 0.00 0.00 39.21 3.06
264 265 1.227263 CCTCCCGAACAGGCGTATG 60.227 63.158 0.00 0.00 39.21 2.39
265 266 1.515954 CTCCCGAACAGGCGTATGT 59.484 57.895 0.00 0.00 39.21 2.29
266 267 0.108329 CTCCCGAACAGGCGTATGTT 60.108 55.000 7.03 7.03 45.89 2.71
267 268 0.390603 TCCCGAACAGGCGTATGTTG 60.391 55.000 11.36 5.24 43.32 3.33
268 269 0.390603 CCCGAACAGGCGTATGTTGA 60.391 55.000 11.36 0.00 43.32 3.18
269 270 0.719465 CCGAACAGGCGTATGTTGAC 59.281 55.000 11.36 0.00 43.32 3.18
270 271 1.424403 CGAACAGGCGTATGTTGACA 58.576 50.000 11.36 0.00 43.32 3.58
271 272 1.795872 CGAACAGGCGTATGTTGACAA 59.204 47.619 11.36 0.00 43.32 3.18
272 273 2.415168 CGAACAGGCGTATGTTGACAAT 59.585 45.455 11.36 0.00 43.32 2.71
273 274 3.615056 CGAACAGGCGTATGTTGACAATA 59.385 43.478 11.36 0.00 43.32 1.90
274 275 4.259810 CGAACAGGCGTATGTTGACAATAG 60.260 45.833 11.36 0.00 43.32 1.73
275 276 4.465632 ACAGGCGTATGTTGACAATAGA 57.534 40.909 0.00 0.00 0.00 1.98
276 277 5.023533 ACAGGCGTATGTTGACAATAGAT 57.976 39.130 0.00 0.00 0.00 1.98
277 278 6.156748 ACAGGCGTATGTTGACAATAGATA 57.843 37.500 0.00 0.00 0.00 1.98
278 279 6.216569 ACAGGCGTATGTTGACAATAGATAG 58.783 40.000 0.00 0.00 0.00 2.08
279 280 6.040504 ACAGGCGTATGTTGACAATAGATAGA 59.959 38.462 0.00 0.00 0.00 1.98
280 281 6.584184 CAGGCGTATGTTGACAATAGATAGAG 59.416 42.308 0.00 0.00 0.00 2.43
281 282 6.490381 AGGCGTATGTTGACAATAGATAGAGA 59.510 38.462 0.00 0.00 0.00 3.10
282 283 7.014326 AGGCGTATGTTGACAATAGATAGAGAA 59.986 37.037 0.00 0.00 0.00 2.87
283 284 7.327275 GGCGTATGTTGACAATAGATAGAGAAG 59.673 40.741 0.00 0.00 0.00 2.85
284 285 8.076781 GCGTATGTTGACAATAGATAGAGAAGA 58.923 37.037 0.00 0.00 0.00 2.87
285 286 9.605955 CGTATGTTGACAATAGATAGAGAAGAG 57.394 37.037 0.00 0.00 0.00 2.85
288 289 8.581253 TGTTGACAATAGATAGAGAAGAGACA 57.419 34.615 0.00 0.00 0.00 3.41
289 290 9.194972 TGTTGACAATAGATAGAGAAGAGACAT 57.805 33.333 0.00 0.00 0.00 3.06
290 291 9.462174 GTTGACAATAGATAGAGAAGAGACATG 57.538 37.037 0.00 0.00 0.00 3.21
291 292 8.175925 TGACAATAGATAGAGAAGAGACATGG 57.824 38.462 0.00 0.00 0.00 3.66
292 293 7.232330 TGACAATAGATAGAGAAGAGACATGGG 59.768 40.741 0.00 0.00 0.00 4.00
293 294 6.496565 ACAATAGATAGAGAAGAGACATGGGG 59.503 42.308 0.00 0.00 0.00 4.96
294 295 4.551215 AGATAGAGAAGAGACATGGGGT 57.449 45.455 0.00 0.00 0.00 4.95
295 296 4.889780 AGATAGAGAAGAGACATGGGGTT 58.110 43.478 0.00 0.00 0.00 4.11
296 297 4.653341 AGATAGAGAAGAGACATGGGGTTG 59.347 45.833 0.00 0.00 0.00 3.77
297 298 1.912043 AGAGAAGAGACATGGGGTTGG 59.088 52.381 0.00 0.00 0.00 3.77
298 299 1.909302 GAGAAGAGACATGGGGTTGGA 59.091 52.381 0.00 0.00 0.00 3.53
299 300 1.630878 AGAAGAGACATGGGGTTGGAC 59.369 52.381 0.00 0.00 0.00 4.02
300 301 1.351017 GAAGAGACATGGGGTTGGACA 59.649 52.381 0.00 0.00 0.00 4.02
301 302 0.693049 AGAGACATGGGGTTGGACAC 59.307 55.000 0.00 0.00 0.00 3.67
302 303 0.400213 GAGACATGGGGTTGGACACA 59.600 55.000 0.00 0.00 0.00 3.72
303 304 0.110486 AGACATGGGGTTGGACACAC 59.890 55.000 0.00 0.00 0.00 3.82
308 309 3.182996 GGGTTGGACACACCCCCT 61.183 66.667 9.98 0.00 43.25 4.79
309 310 2.774633 GGGTTGGACACACCCCCTT 61.775 63.158 9.98 0.00 43.25 3.95
310 311 1.231928 GGTTGGACACACCCCCTTT 59.768 57.895 0.00 0.00 38.00 3.11
311 312 1.112916 GGTTGGACACACCCCCTTTG 61.113 60.000 0.00 0.00 38.00 2.77
312 313 1.456705 TTGGACACACCCCCTTTGC 60.457 57.895 0.00 0.00 38.00 3.68
313 314 1.943730 TTGGACACACCCCCTTTGCT 61.944 55.000 0.00 0.00 38.00 3.91
314 315 1.063070 TGGACACACCCCCTTTGCTA 61.063 55.000 0.00 0.00 38.00 3.49
315 316 0.111639 GGACACACCCCCTTTGCTAA 59.888 55.000 0.00 0.00 0.00 3.09
316 317 1.272480 GGACACACCCCCTTTGCTAAT 60.272 52.381 0.00 0.00 0.00 1.73
317 318 1.818674 GACACACCCCCTTTGCTAATG 59.181 52.381 0.00 0.00 0.00 1.90
318 319 1.427368 ACACACCCCCTTTGCTAATGA 59.573 47.619 0.00 0.00 0.00 2.57
319 320 1.818674 CACACCCCCTTTGCTAATGAC 59.181 52.381 0.00 0.00 0.00 3.06
320 321 1.710809 ACACCCCCTTTGCTAATGACT 59.289 47.619 0.00 0.00 0.00 3.41
321 322 2.916934 ACACCCCCTTTGCTAATGACTA 59.083 45.455 0.00 0.00 0.00 2.59
322 323 3.527665 ACACCCCCTTTGCTAATGACTAT 59.472 43.478 0.00 0.00 0.00 2.12
323 324 4.017499 ACACCCCCTTTGCTAATGACTATT 60.017 41.667 0.00 0.00 0.00 1.73
324 325 4.580580 CACCCCCTTTGCTAATGACTATTC 59.419 45.833 0.00 0.00 0.00 1.75
325 326 4.229582 ACCCCCTTTGCTAATGACTATTCA 59.770 41.667 0.00 0.00 35.73 2.57
326 327 5.103515 ACCCCCTTTGCTAATGACTATTCAT 60.104 40.000 0.00 0.00 44.98 2.57
340 341 6.962686 TGACTATTCATTGATTAGCATGTGC 58.037 36.000 13.11 0.00 42.49 4.57
341 342 7.447545 ATGACTATTCATTGATTAGCATGTGCT 59.552 33.333 12.66 12.66 46.45 4.40
371 372 8.953368 AACCTACTAATTAATTCCGAACGATT 57.047 30.769 3.39 0.00 0.00 3.34
373 374 9.688592 ACCTACTAATTAATTCCGAACGATTAG 57.311 33.333 3.39 13.35 34.74 1.73
374 375 8.645487 CCTACTAATTAATTCCGAACGATTAGC 58.355 37.037 3.39 0.00 32.86 3.09
375 376 9.188588 CTACTAATTAATTCCGAACGATTAGCA 57.811 33.333 3.39 6.43 32.86 3.49
376 377 8.603242 ACTAATTAATTCCGAACGATTAGCAT 57.397 30.769 3.39 1.79 32.86 3.79
377 378 8.709646 ACTAATTAATTCCGAACGATTAGCATC 58.290 33.333 3.39 0.00 32.86 3.91
378 379 7.730364 AATTAATTCCGAACGATTAGCATCT 57.270 32.000 0.00 0.00 0.00 2.90
379 380 6.764877 TTAATTCCGAACGATTAGCATCTC 57.235 37.500 0.00 0.00 0.00 2.75
380 381 4.592485 ATTCCGAACGATTAGCATCTCT 57.408 40.909 0.00 0.00 0.00 3.10
381 382 5.707242 ATTCCGAACGATTAGCATCTCTA 57.293 39.130 0.00 0.00 0.00 2.43
382 383 5.509716 TTCCGAACGATTAGCATCTCTAA 57.490 39.130 0.00 0.00 41.17 2.10
383 384 5.109662 TCCGAACGATTAGCATCTCTAAG 57.890 43.478 0.00 0.00 40.34 2.18
384 385 3.670991 CCGAACGATTAGCATCTCTAAGC 59.329 47.826 0.00 0.00 40.34 3.09
385 386 4.290969 CGAACGATTAGCATCTCTAAGCA 58.709 43.478 0.00 0.00 42.26 3.91
386 387 4.740205 CGAACGATTAGCATCTCTAAGCAA 59.260 41.667 0.00 0.00 42.26 3.91
387 388 5.232202 CGAACGATTAGCATCTCTAAGCAAA 59.768 40.000 0.00 0.00 42.26 3.68
388 389 6.237835 CGAACGATTAGCATCTCTAAGCAAAA 60.238 38.462 0.00 0.00 42.26 2.44
389 390 6.595772 ACGATTAGCATCTCTAAGCAAAAG 57.404 37.500 0.00 0.00 42.26 2.27
390 391 6.109359 ACGATTAGCATCTCTAAGCAAAAGT 58.891 36.000 0.00 0.00 42.26 2.66
391 392 6.036517 ACGATTAGCATCTCTAAGCAAAAGTG 59.963 38.462 0.00 0.00 42.26 3.16
403 404 2.802256 GCAAAAGTGCCAGCTATTAGC 58.198 47.619 7.64 7.64 45.68 3.09
404 405 2.480244 GCAAAAGTGCCAGCTATTAGCC 60.480 50.000 12.05 0.00 45.68 3.93
405 406 3.019564 CAAAAGTGCCAGCTATTAGCCT 58.980 45.455 12.05 0.00 43.77 4.58
406 407 4.199310 CAAAAGTGCCAGCTATTAGCCTA 58.801 43.478 12.05 0.00 43.77 3.93
407 408 3.477210 AAGTGCCAGCTATTAGCCTAC 57.523 47.619 12.05 6.59 43.77 3.18
408 409 2.398588 AGTGCCAGCTATTAGCCTACA 58.601 47.619 12.05 5.20 43.77 2.74
409 410 2.771943 AGTGCCAGCTATTAGCCTACAA 59.228 45.455 12.05 0.00 43.77 2.41
410 411 2.872858 GTGCCAGCTATTAGCCTACAAC 59.127 50.000 12.05 1.91 43.77 3.32
411 412 2.771943 TGCCAGCTATTAGCCTACAACT 59.228 45.455 12.05 0.00 43.77 3.16
412 413 3.964688 TGCCAGCTATTAGCCTACAACTA 59.035 43.478 12.05 0.00 43.77 2.24
413 414 4.593206 TGCCAGCTATTAGCCTACAACTAT 59.407 41.667 12.05 0.00 43.77 2.12
414 415 5.172205 GCCAGCTATTAGCCTACAACTATC 58.828 45.833 12.05 0.00 43.77 2.08
415 416 5.046950 GCCAGCTATTAGCCTACAACTATCT 60.047 44.000 12.05 0.00 43.77 1.98
416 417 6.519213 GCCAGCTATTAGCCTACAACTATCTT 60.519 42.308 12.05 0.00 43.77 2.40
417 418 7.445945 CCAGCTATTAGCCTACAACTATCTTT 58.554 38.462 12.05 0.00 43.77 2.52
418 419 7.386299 CCAGCTATTAGCCTACAACTATCTTTG 59.614 40.741 12.05 0.00 43.77 2.77
419 420 7.928706 CAGCTATTAGCCTACAACTATCTTTGT 59.071 37.037 12.05 0.00 43.77 2.83
420 421 8.145122 AGCTATTAGCCTACAACTATCTTTGTC 58.855 37.037 12.05 0.00 43.77 3.18
421 422 8.145122 GCTATTAGCCTACAACTATCTTTGTCT 58.855 37.037 4.21 0.00 36.78 3.41
422 423 9.469807 CTATTAGCCTACAACTATCTTTGTCTG 57.530 37.037 0.00 0.00 40.29 3.51
423 424 5.091261 AGCCTACAACTATCTTTGTCTGG 57.909 43.478 0.00 0.00 40.29 3.86
424 425 4.080863 AGCCTACAACTATCTTTGTCTGGG 60.081 45.833 8.87 4.97 40.29 4.45
425 426 4.323562 GCCTACAACTATCTTTGTCTGGGT 60.324 45.833 8.87 0.00 40.29 4.51
426 427 5.803470 GCCTACAACTATCTTTGTCTGGGTT 60.803 44.000 8.87 0.00 40.29 4.11
427 428 6.238648 CCTACAACTATCTTTGTCTGGGTTT 58.761 40.000 0.00 0.00 40.29 3.27
428 429 7.391620 CCTACAACTATCTTTGTCTGGGTTTA 58.608 38.462 0.00 0.00 40.29 2.01
429 430 8.047310 CCTACAACTATCTTTGTCTGGGTTTAT 58.953 37.037 0.00 0.00 40.29 1.40
430 431 9.449719 CTACAACTATCTTTGTCTGGGTTTATT 57.550 33.333 0.00 0.00 40.29 1.40
432 433 9.449719 ACAACTATCTTTGTCTGGGTTTATTAG 57.550 33.333 0.00 0.00 34.48 1.73
433 434 9.449719 CAACTATCTTTGTCTGGGTTTATTAGT 57.550 33.333 0.00 0.00 0.00 2.24
434 435 9.668497 AACTATCTTTGTCTGGGTTTATTAGTC 57.332 33.333 0.00 0.00 0.00 2.59
435 436 8.265764 ACTATCTTTGTCTGGGTTTATTAGTCC 58.734 37.037 0.00 0.00 0.00 3.85
436 437 5.484715 TCTTTGTCTGGGTTTATTAGTCCG 58.515 41.667 0.00 0.00 0.00 4.79
437 438 4.895668 TTGTCTGGGTTTATTAGTCCGT 57.104 40.909 0.00 0.00 0.00 4.69
438 439 5.999205 TTGTCTGGGTTTATTAGTCCGTA 57.001 39.130 0.00 0.00 0.00 4.02
439 440 5.999205 TGTCTGGGTTTATTAGTCCGTAA 57.001 39.130 0.00 0.00 0.00 3.18
440 441 5.723295 TGTCTGGGTTTATTAGTCCGTAAC 58.277 41.667 0.00 0.00 0.00 2.50
441 442 4.800471 GTCTGGGTTTATTAGTCCGTAACG 59.200 45.833 0.00 0.00 0.00 3.18
442 443 4.462483 TCTGGGTTTATTAGTCCGTAACGT 59.538 41.667 0.00 0.00 0.00 3.99
443 444 5.650266 TCTGGGTTTATTAGTCCGTAACGTA 59.350 40.000 0.00 0.00 0.00 3.57
444 445 6.321181 TCTGGGTTTATTAGTCCGTAACGTAT 59.679 38.462 0.00 0.00 0.00 3.06
445 446 6.872920 TGGGTTTATTAGTCCGTAACGTATT 58.127 36.000 0.00 0.00 0.00 1.89
446 447 7.327214 TGGGTTTATTAGTCCGTAACGTATTT 58.673 34.615 0.00 0.00 0.00 1.40
447 448 7.821846 TGGGTTTATTAGTCCGTAACGTATTTT 59.178 33.333 0.00 0.00 0.00 1.82
448 449 8.116136 GGGTTTATTAGTCCGTAACGTATTTTG 58.884 37.037 0.00 0.00 0.00 2.44
449 450 8.116136 GGTTTATTAGTCCGTAACGTATTTTGG 58.884 37.037 0.00 0.00 0.00 3.28
450 451 7.769272 TTATTAGTCCGTAACGTATTTTGGG 57.231 36.000 0.00 0.00 0.00 4.12
451 452 3.683365 AGTCCGTAACGTATTTTGGGT 57.317 42.857 0.00 0.00 0.00 4.51
452 453 3.588955 AGTCCGTAACGTATTTTGGGTC 58.411 45.455 0.00 0.00 0.00 4.46
453 454 3.006752 AGTCCGTAACGTATTTTGGGTCA 59.993 43.478 0.00 0.00 0.00 4.02
454 455 3.745458 GTCCGTAACGTATTTTGGGTCAA 59.255 43.478 0.00 0.00 0.00 3.18
455 456 4.213059 GTCCGTAACGTATTTTGGGTCAAA 59.787 41.667 0.00 0.00 0.00 2.69
456 457 4.213059 TCCGTAACGTATTTTGGGTCAAAC 59.787 41.667 0.00 0.00 32.79 2.93
457 458 4.213906 CCGTAACGTATTTTGGGTCAAACT 59.786 41.667 0.00 0.00 32.79 2.66
458 459 5.277925 CCGTAACGTATTTTGGGTCAAACTT 60.278 40.000 0.00 0.00 32.79 2.66
459 460 6.200808 CGTAACGTATTTTGGGTCAAACTTT 58.799 36.000 0.00 0.00 32.79 2.66
460 461 6.141053 CGTAACGTATTTTGGGTCAAACTTTG 59.859 38.462 0.00 0.00 32.79 2.77
461 462 5.838531 ACGTATTTTGGGTCAAACTTTGA 57.161 34.783 0.00 0.00 32.79 2.69
475 476 7.581213 TCAAACTTTGACCACATATTTGAGT 57.419 32.000 0.00 0.00 34.08 3.41
476 477 8.684386 TCAAACTTTGACCACATATTTGAGTA 57.316 30.769 0.00 0.00 34.08 2.59
477 478 8.783093 TCAAACTTTGACCACATATTTGAGTAG 58.217 33.333 0.00 0.00 34.08 2.57
478 479 6.743575 ACTTTGACCACATATTTGAGTAGC 57.256 37.500 0.00 0.00 0.00 3.58
479 480 6.237901 ACTTTGACCACATATTTGAGTAGCA 58.762 36.000 0.00 0.00 0.00 3.49
480 481 6.714810 ACTTTGACCACATATTTGAGTAGCAA 59.285 34.615 0.00 0.00 33.88 3.91
497 498 9.225436 TGAGTAGCAAAATGTTAATACATGTCA 57.775 29.630 0.00 0.00 44.14 3.58
498 499 9.490663 GAGTAGCAAAATGTTAATACATGTCAC 57.509 33.333 0.00 0.00 44.14 3.67
499 500 9.008965 AGTAGCAAAATGTTAATACATGTCACA 57.991 29.630 0.00 1.86 44.14 3.58
500 501 9.619316 GTAGCAAAATGTTAATACATGTCACAA 57.381 29.630 0.00 0.00 44.14 3.33
501 502 8.746922 AGCAAAATGTTAATACATGTCACAAG 57.253 30.769 0.00 0.00 44.14 3.16
502 503 8.575589 AGCAAAATGTTAATACATGTCACAAGA 58.424 29.630 0.00 0.00 44.14 3.02
503 504 9.190858 GCAAAATGTTAATACATGTCACAAGAA 57.809 29.630 0.00 0.00 44.14 2.52
600 601 6.739331 AGTTAGAATCATGGTCTTCTAGGG 57.261 41.667 5.32 0.00 35.86 3.53
601 602 6.206042 AGTTAGAATCATGGTCTTCTAGGGT 58.794 40.000 5.32 0.00 35.86 4.34
602 603 6.325286 AGTTAGAATCATGGTCTTCTAGGGTC 59.675 42.308 5.32 3.75 35.86 4.46
603 604 4.889780 AGAATCATGGTCTTCTAGGGTCT 58.110 43.478 0.00 0.00 30.08 3.85
604 605 6.031964 AGAATCATGGTCTTCTAGGGTCTA 57.968 41.667 0.00 0.00 30.08 2.59
605 606 6.074648 AGAATCATGGTCTTCTAGGGTCTAG 58.925 44.000 0.00 0.00 30.08 2.43
627 628 0.889186 AACACCGTGGAAGCCATCAC 60.889 55.000 3.03 0.00 35.28 3.06
646 647 0.744874 CGCGGGTCTCCTCTATCAAA 59.255 55.000 0.00 0.00 0.00 2.69
688 689 3.583086 TCCGAAGTTTCATTCTTCCTCCT 59.417 43.478 0.00 0.00 38.31 3.69
690 691 5.105310 TCCGAAGTTTCATTCTTCCTCCTAG 60.105 44.000 0.00 0.00 38.31 3.02
693 694 5.685520 AGTTTCATTCTTCCTCCTAGACC 57.314 43.478 0.00 0.00 0.00 3.85
694 695 5.346270 AGTTTCATTCTTCCTCCTAGACCT 58.654 41.667 0.00 0.00 0.00 3.85
695 696 5.423931 AGTTTCATTCTTCCTCCTAGACCTC 59.576 44.000 0.00 0.00 0.00 3.85
736 737 1.884075 TAGCCCGTGTCGCTGATGTT 61.884 55.000 0.00 0.00 37.12 2.71
737 738 1.447140 GCCCGTGTCGCTGATGTTA 60.447 57.895 0.00 0.00 0.00 2.41
738 739 1.693083 GCCCGTGTCGCTGATGTTAC 61.693 60.000 0.00 0.00 0.00 2.50
739 740 0.108804 CCCGTGTCGCTGATGTTACT 60.109 55.000 0.00 0.00 0.00 2.24
740 741 1.269166 CCGTGTCGCTGATGTTACTC 58.731 55.000 0.00 0.00 0.00 2.59
755 756 2.532531 TACTCGTACAGTACAAGCGC 57.467 50.000 11.37 0.00 36.43 5.92
888 908 4.329545 TGCTGGCCTCCCGTGTTC 62.330 66.667 3.32 0.00 0.00 3.18
1032 1052 1.729276 TGTTGCTCACACAAGCTGC 59.271 52.632 0.00 0.00 42.94 5.25
1095 1115 2.041301 CCACCCCTGACCCCGATA 60.041 66.667 0.00 0.00 0.00 2.92
1131 1151 2.489329 TGTACTACCCAGTTCTGTACGC 59.511 50.000 0.00 0.00 37.04 4.42
1153 1173 1.275505 CGATGTGTGCAGAGTAGCAG 58.724 55.000 0.00 0.00 46.69 4.24
1154 1174 1.005340 GATGTGTGCAGAGTAGCAGC 58.995 55.000 0.00 0.00 46.69 5.25
1155 1175 0.322648 ATGTGTGCAGAGTAGCAGCA 59.677 50.000 0.00 0.00 46.69 4.41
1195 1215 2.355481 GGTTCGTGACGCGGTCTT 60.355 61.111 12.47 0.00 41.72 3.01
1196 1216 2.654912 GGTTCGTGACGCGGTCTTG 61.655 63.158 12.47 3.08 41.72 3.02
1197 1217 3.033764 TTCGTGACGCGGTCTTGC 61.034 61.111 12.47 0.58 41.72 4.01
1198 1218 3.493830 TTCGTGACGCGGTCTTGCT 62.494 57.895 12.47 0.00 41.72 3.91
1331 1354 2.956964 GAGGTCGAAGCGGCATCG 60.957 66.667 20.30 20.30 41.53 3.84
1343 1366 2.182842 GGCATCGCTCATGTGGGAC 61.183 63.158 15.66 5.49 34.56 4.46
1369 1392 3.376078 GCGGGGTGGTGAGTACGA 61.376 66.667 0.00 0.00 0.00 3.43
1423 1446 5.986135 GTGTTGTAATTTTGGCCATGTTGTA 59.014 36.000 6.09 0.00 0.00 2.41
1428 1451 6.926272 TGTAATTTTGGCCATGTTGTAACTTC 59.074 34.615 6.09 0.00 0.00 3.01
1438 1477 6.149474 GCCATGTTGTAACTTCAGACTTGTAT 59.851 38.462 0.00 0.00 0.00 2.29
1439 1478 7.624344 GCCATGTTGTAACTTCAGACTTGTATC 60.624 40.741 0.00 0.00 0.00 2.24
1440 1479 7.411912 CCATGTTGTAACTTCAGACTTGTATCG 60.412 40.741 0.00 0.00 0.00 2.92
1441 1480 5.924254 TGTTGTAACTTCAGACTTGTATCGG 59.076 40.000 0.00 0.00 0.00 4.18
1442 1481 5.717078 TGTAACTTCAGACTTGTATCGGT 57.283 39.130 0.00 0.00 0.00 4.69
1443 1482 6.092955 TGTAACTTCAGACTTGTATCGGTT 57.907 37.500 0.00 0.00 0.00 4.44
1446 1485 4.235360 ACTTCAGACTTGTATCGGTTTCG 58.765 43.478 0.00 0.00 37.82 3.46
1447 1486 3.226346 TCAGACTTGTATCGGTTTCGG 57.774 47.619 0.00 0.00 36.95 4.30
1448 1487 2.821378 TCAGACTTGTATCGGTTTCGGA 59.179 45.455 0.00 0.00 36.95 4.55
1449 1488 3.256383 TCAGACTTGTATCGGTTTCGGAA 59.744 43.478 0.00 0.00 36.95 4.30
1450 1489 3.991773 CAGACTTGTATCGGTTTCGGAAA 59.008 43.478 0.00 0.00 36.95 3.13
1451 1490 4.449743 CAGACTTGTATCGGTTTCGGAAAA 59.550 41.667 4.46 0.00 36.95 2.29
1452 1491 5.049954 CAGACTTGTATCGGTTTCGGAAAAA 60.050 40.000 4.46 0.00 36.95 1.94
1483 1522 9.517868 ACTTTAGACTTGTACTACTACATGAGT 57.482 33.333 0.00 1.10 42.69 3.41
1561 1600 9.967245 GAAAATAGTTTGACAGGTTTGTTTTTC 57.033 29.630 0.00 0.00 37.76 2.29
1646 1685 4.889832 ATGCGATTCAAACATTCCTCTC 57.110 40.909 0.00 0.00 0.00 3.20
1685 1724 2.507102 CTCGAACGCGTGCAGGAT 60.507 61.111 19.21 0.00 38.98 3.24
1794 1872 1.332375 GCGCTAACAAACCAGTGAACA 59.668 47.619 0.00 0.00 0.00 3.18
1855 1938 7.042187 AGCAGCTGTATAATCAATTTTCTCTCG 60.042 37.037 16.64 0.00 0.00 4.04
1859 1942 9.031360 GCTGTATAATCAATTTTCTCTCGTGTA 57.969 33.333 0.00 0.00 0.00 2.90
2349 2466 4.496183 GTCTGCATACTACTTTCGTTCTCG 59.504 45.833 0.00 0.00 38.55 4.04
2411 2554 5.779806 ACAGACCGATAAATTTCTTGTCG 57.220 39.130 0.00 1.36 0.00 4.35
2416 2559 5.424757 ACCGATAAATTTCTTGTCGATCCA 58.575 37.500 13.40 0.00 34.46 3.41
2553 2697 3.957383 TTTTTGAAACGGAGGCAGC 57.043 47.368 0.00 0.00 0.00 5.25
2603 2747 9.710900 AAGAAGAAAATTGCCCAATTAGTTAAG 57.289 29.630 6.67 0.00 39.88 1.85
2604 2748 8.314021 AGAAGAAAATTGCCCAATTAGTTAAGG 58.686 33.333 6.67 0.00 39.88 2.69
2613 2757 6.671779 TGCCCAATTAGTTAAGGGAAAATCAT 59.328 34.615 0.00 0.00 44.30 2.45
2623 2767 3.663025 AGGGAAAATCATGCAAAAACCG 58.337 40.909 0.00 0.00 0.00 4.44
2633 2777 6.206395 TCATGCAAAAACCGATACAATCAT 57.794 33.333 0.00 0.00 0.00 2.45
2634 2778 6.264832 TCATGCAAAAACCGATACAATCATC 58.735 36.000 0.00 0.00 0.00 2.92
2635 2779 5.635417 TGCAAAAACCGATACAATCATCA 57.365 34.783 0.00 0.00 0.00 3.07
2636 2780 6.018589 TGCAAAAACCGATACAATCATCAA 57.981 33.333 0.00 0.00 0.00 2.57
2637 2781 6.450545 TGCAAAAACCGATACAATCATCAAA 58.549 32.000 0.00 0.00 0.00 2.69
2638 2782 6.364706 TGCAAAAACCGATACAATCATCAAAC 59.635 34.615 0.00 0.00 0.00 2.93
2639 2783 6.183360 GCAAAAACCGATACAATCATCAAACC 60.183 38.462 0.00 0.00 0.00 3.27
2640 2784 6.582677 AAAACCGATACAATCATCAAACCA 57.417 33.333 0.00 0.00 0.00 3.67
2737 2881 2.935849 CACAAGCATATTACCGTGAGCA 59.064 45.455 0.00 0.00 0.00 4.26
2752 2896 4.870426 CCGTGAGCAACATTATACAAGTCT 59.130 41.667 0.00 0.00 0.00 3.24
2792 2937 3.152261 AGCCGACTGATCTAAAGAACG 57.848 47.619 0.00 0.00 0.00 3.95
2804 2949 6.752351 TGATCTAAAGAACGACAGTAGCATTC 59.248 38.462 0.00 0.00 0.00 2.67
2958 3104 1.900245 TACAGACACAGCGTAGACCA 58.100 50.000 0.00 0.00 0.00 4.02
3122 3268 2.637025 GGTGTTCGTTGCGCACAT 59.363 55.556 11.12 0.00 35.41 3.21
3130 3276 2.361483 TTGCGCACATGGCTCCAT 60.361 55.556 11.12 0.00 41.67 3.41
3250 3404 9.838339 GGTAGGAAAGATCAGATTATTTGAGAA 57.162 33.333 0.00 0.00 0.00 2.87
3281 3435 6.983906 TCTCCTACAGCATCTGATGAATTA 57.016 37.500 21.30 7.02 35.09 1.40
3342 3496 4.817318 AGGGAGAGAAAATGAGTCACTC 57.183 45.455 0.00 0.00 33.46 3.51
3353 3507 6.371809 AAATGAGTCACTCGTTTAGCAAAA 57.628 33.333 21.37 0.00 44.66 2.44
3367 3521 6.253512 CGTTTAGCAAAAATAGGAGCCATTTC 59.746 38.462 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.293498 CACCACGCTCCTAGCACTT 59.707 57.895 0.00 0.00 42.58 3.16
1 2 2.650116 CCACCACGCTCCTAGCACT 61.650 63.158 0.00 0.00 42.58 4.40
2 3 2.125512 CCACCACGCTCCTAGCAC 60.126 66.667 0.00 0.00 42.58 4.40
3 4 1.476845 TTTCCACCACGCTCCTAGCA 61.477 55.000 0.00 0.00 42.58 3.49
5 6 2.093447 AGAATTTCCACCACGCTCCTAG 60.093 50.000 0.00 0.00 0.00 3.02
6 7 1.906574 AGAATTTCCACCACGCTCCTA 59.093 47.619 0.00 0.00 0.00 2.94
7 8 0.693049 AGAATTTCCACCACGCTCCT 59.307 50.000 0.00 0.00 0.00 3.69
9 10 1.087501 GGAGAATTTCCACCACGCTC 58.912 55.000 5.66 0.00 46.01 5.03
18 19 3.209812 GCCCGCCGGAGAATTTCC 61.210 66.667 5.05 0.00 43.04 3.13
19 20 3.573491 CGCCCGCCGGAGAATTTC 61.573 66.667 5.05 0.00 0.00 2.17
40 41 3.124921 GATGGTGACCCGCAACCG 61.125 66.667 0.00 0.00 31.36 4.44
41 42 3.124921 CGATGGTGACCCGCAACC 61.125 66.667 0.00 0.00 31.36 3.77
42 43 1.512156 AAACGATGGTGACCCGCAAC 61.512 55.000 0.00 0.00 33.72 4.17
43 44 0.820074 AAAACGATGGTGACCCGCAA 60.820 50.000 0.00 0.00 0.00 4.85
44 45 0.820074 AAAAACGATGGTGACCCGCA 60.820 50.000 0.00 0.00 0.00 5.69
45 46 0.386731 CAAAAACGATGGTGACCCGC 60.387 55.000 0.00 0.00 0.00 6.13
46 47 0.948678 ACAAAAACGATGGTGACCCG 59.051 50.000 0.00 0.00 0.00 5.28
47 48 1.069500 CGACAAAAACGATGGTGACCC 60.069 52.381 0.00 0.00 0.00 4.46
48 49 1.868498 TCGACAAAAACGATGGTGACC 59.132 47.619 0.00 0.00 34.85 4.02
49 50 2.349155 GGTCGACAAAAACGATGGTGAC 60.349 50.000 18.91 0.00 41.62 3.67
50 51 1.868498 GGTCGACAAAAACGATGGTGA 59.132 47.619 18.91 0.00 41.62 4.02
51 52 1.069500 GGGTCGACAAAAACGATGGTG 60.069 52.381 18.91 0.00 41.62 4.17
52 53 1.232119 GGGTCGACAAAAACGATGGT 58.768 50.000 18.91 0.00 41.62 3.55
53 54 0.165079 CGGGTCGACAAAAACGATGG 59.835 55.000 18.91 0.00 41.62 3.51
54 55 1.141645 TCGGGTCGACAAAAACGATG 58.858 50.000 18.91 0.00 41.62 3.84
55 56 3.591979 TCGGGTCGACAAAAACGAT 57.408 47.368 18.91 0.00 41.62 3.73
65 66 0.820482 TGACAACAGAGTCGGGTCGA 60.820 55.000 0.00 0.00 41.41 4.20
66 67 0.243907 ATGACAACAGAGTCGGGTCG 59.756 55.000 0.00 0.00 41.41 4.79
67 68 2.457366 AATGACAACAGAGTCGGGTC 57.543 50.000 0.00 0.00 41.41 4.46
68 69 2.897969 ACTAATGACAACAGAGTCGGGT 59.102 45.455 0.00 0.00 41.41 5.28
69 70 3.594603 ACTAATGACAACAGAGTCGGG 57.405 47.619 0.00 0.00 41.41 5.14
70 71 5.230942 AGAAACTAATGACAACAGAGTCGG 58.769 41.667 0.00 0.00 41.41 4.79
71 72 6.771188 AAGAAACTAATGACAACAGAGTCG 57.229 37.500 0.00 0.00 41.41 4.18
95 96 9.705290 GCCCAAAAGAAATAACAGAGAAATAAA 57.295 29.630 0.00 0.00 0.00 1.40
96 97 9.088987 AGCCCAAAAGAAATAACAGAGAAATAA 57.911 29.630 0.00 0.00 0.00 1.40
97 98 8.650143 AGCCCAAAAGAAATAACAGAGAAATA 57.350 30.769 0.00 0.00 0.00 1.40
98 99 7.544804 AGCCCAAAAGAAATAACAGAGAAAT 57.455 32.000 0.00 0.00 0.00 2.17
99 100 6.976934 AGCCCAAAAGAAATAACAGAGAAA 57.023 33.333 0.00 0.00 0.00 2.52
100 101 6.015434 GGAAGCCCAAAAGAAATAACAGAGAA 60.015 38.462 0.00 0.00 0.00 2.87
101 102 5.476945 GGAAGCCCAAAAGAAATAACAGAGA 59.523 40.000 0.00 0.00 0.00 3.10
102 103 5.478332 AGGAAGCCCAAAAGAAATAACAGAG 59.522 40.000 0.00 0.00 33.88 3.35
103 104 5.393866 AGGAAGCCCAAAAGAAATAACAGA 58.606 37.500 0.00 0.00 33.88 3.41
104 105 5.728637 AGGAAGCCCAAAAGAAATAACAG 57.271 39.130 0.00 0.00 33.88 3.16
105 106 5.365314 ACAAGGAAGCCCAAAAGAAATAACA 59.635 36.000 0.00 0.00 33.88 2.41
106 107 5.696270 CACAAGGAAGCCCAAAAGAAATAAC 59.304 40.000 0.00 0.00 33.88 1.89
107 108 5.365314 ACACAAGGAAGCCCAAAAGAAATAA 59.635 36.000 0.00 0.00 33.88 1.40
108 109 4.898861 ACACAAGGAAGCCCAAAAGAAATA 59.101 37.500 0.00 0.00 33.88 1.40
109 110 3.711190 ACACAAGGAAGCCCAAAAGAAAT 59.289 39.130 0.00 0.00 33.88 2.17
110 111 3.103742 ACACAAGGAAGCCCAAAAGAAA 58.896 40.909 0.00 0.00 33.88 2.52
111 112 2.745968 ACACAAGGAAGCCCAAAAGAA 58.254 42.857 0.00 0.00 33.88 2.52
112 113 2.430332 CAACACAAGGAAGCCCAAAAGA 59.570 45.455 0.00 0.00 33.88 2.52
113 114 2.168313 ACAACACAAGGAAGCCCAAAAG 59.832 45.455 0.00 0.00 33.88 2.27
114 115 2.167487 GACAACACAAGGAAGCCCAAAA 59.833 45.455 0.00 0.00 33.88 2.44
115 116 1.754226 GACAACACAAGGAAGCCCAAA 59.246 47.619 0.00 0.00 33.88 3.28
116 117 1.064017 AGACAACACAAGGAAGCCCAA 60.064 47.619 0.00 0.00 33.88 4.12
117 118 0.550914 AGACAACACAAGGAAGCCCA 59.449 50.000 0.00 0.00 33.88 5.36
118 119 0.954452 CAGACAACACAAGGAAGCCC 59.046 55.000 0.00 0.00 0.00 5.19
119 120 0.312102 GCAGACAACACAAGGAAGCC 59.688 55.000 0.00 0.00 0.00 4.35
120 121 0.312102 GGCAGACAACACAAGGAAGC 59.688 55.000 0.00 0.00 0.00 3.86
121 122 0.954452 GGGCAGACAACACAAGGAAG 59.046 55.000 0.00 0.00 0.00 3.46
122 123 0.467290 GGGGCAGACAACACAAGGAA 60.467 55.000 0.00 0.00 0.00 3.36
123 124 1.150536 GGGGCAGACAACACAAGGA 59.849 57.895 0.00 0.00 0.00 3.36
124 125 1.152777 TGGGGCAGACAACACAAGG 60.153 57.895 0.00 0.00 0.00 3.61
125 126 1.799258 GCTGGGGCAGACAACACAAG 61.799 60.000 0.00 0.00 38.54 3.16
126 127 1.827789 GCTGGGGCAGACAACACAA 60.828 57.895 0.00 0.00 38.54 3.33
127 128 2.203337 GCTGGGGCAGACAACACA 60.203 61.111 0.00 0.00 38.54 3.72
128 129 2.203337 TGCTGGGGCAGACAACAC 60.203 61.111 0.00 0.00 44.28 3.32
137 138 1.004440 GATAGTCCGATGCTGGGGC 60.004 63.158 0.00 0.00 39.26 5.80
138 139 0.319728 CTGATAGTCCGATGCTGGGG 59.680 60.000 0.00 0.00 0.00 4.96
139 140 1.043816 ACTGATAGTCCGATGCTGGG 58.956 55.000 0.00 0.00 0.00 4.45
140 141 2.159043 ACAACTGATAGTCCGATGCTGG 60.159 50.000 0.00 0.00 0.00 4.85
141 142 3.170791 ACAACTGATAGTCCGATGCTG 57.829 47.619 0.00 0.00 0.00 4.41
142 143 4.320567 CGATACAACTGATAGTCCGATGCT 60.321 45.833 0.00 0.00 0.00 3.79
143 144 3.914966 CGATACAACTGATAGTCCGATGC 59.085 47.826 0.00 0.00 0.00 3.91
144 145 4.912187 CACGATACAACTGATAGTCCGATG 59.088 45.833 0.00 0.00 0.00 3.84
145 146 4.579340 ACACGATACAACTGATAGTCCGAT 59.421 41.667 0.00 0.00 0.00 4.18
146 147 3.943381 ACACGATACAACTGATAGTCCGA 59.057 43.478 0.00 0.00 0.00 4.55
147 148 4.035684 CACACGATACAACTGATAGTCCG 58.964 47.826 0.00 0.00 0.00 4.79
148 149 4.142227 ACCACACGATACAACTGATAGTCC 60.142 45.833 0.00 0.00 0.00 3.85
149 150 4.995124 ACCACACGATACAACTGATAGTC 58.005 43.478 0.00 0.00 0.00 2.59
150 151 5.168569 CAACCACACGATACAACTGATAGT 58.831 41.667 0.00 0.00 0.00 2.12
151 152 4.032900 GCAACCACACGATACAACTGATAG 59.967 45.833 0.00 0.00 0.00 2.08
152 153 3.930229 GCAACCACACGATACAACTGATA 59.070 43.478 0.00 0.00 0.00 2.15
153 154 2.742053 GCAACCACACGATACAACTGAT 59.258 45.455 0.00 0.00 0.00 2.90
154 155 2.139917 GCAACCACACGATACAACTGA 58.860 47.619 0.00 0.00 0.00 3.41
155 156 2.143122 AGCAACCACACGATACAACTG 58.857 47.619 0.00 0.00 0.00 3.16
156 157 2.543777 AGCAACCACACGATACAACT 57.456 45.000 0.00 0.00 0.00 3.16
157 158 5.983720 AGATATAGCAACCACACGATACAAC 59.016 40.000 0.00 0.00 0.00 3.32
158 159 6.156748 AGATATAGCAACCACACGATACAA 57.843 37.500 0.00 0.00 0.00 2.41
159 160 5.784578 AGATATAGCAACCACACGATACA 57.215 39.130 0.00 0.00 0.00 2.29
174 175 7.371936 GCTTTCACCCCGCTATATAGATATAG 58.628 42.308 14.16 10.90 43.16 1.31
175 176 6.267014 GGCTTTCACCCCGCTATATAGATATA 59.733 42.308 14.16 0.00 0.00 0.86
176 177 5.070580 GGCTTTCACCCCGCTATATAGATAT 59.929 44.000 14.16 0.00 0.00 1.63
177 178 4.404715 GGCTTTCACCCCGCTATATAGATA 59.595 45.833 14.16 0.00 0.00 1.98
178 179 3.197983 GGCTTTCACCCCGCTATATAGAT 59.802 47.826 14.16 0.00 0.00 1.98
179 180 2.565834 GGCTTTCACCCCGCTATATAGA 59.434 50.000 14.16 0.00 0.00 1.98
180 181 2.567615 AGGCTTTCACCCCGCTATATAG 59.432 50.000 5.30 5.30 0.00 1.31
181 182 2.616524 AGGCTTTCACCCCGCTATATA 58.383 47.619 0.00 0.00 0.00 0.86
182 183 1.435256 AGGCTTTCACCCCGCTATAT 58.565 50.000 0.00 0.00 0.00 0.86
183 184 2.091098 TAGGCTTTCACCCCGCTATA 57.909 50.000 0.00 0.00 0.00 1.31
184 185 1.435256 ATAGGCTTTCACCCCGCTAT 58.565 50.000 0.00 0.00 0.00 2.97
185 186 1.209621 AATAGGCTTTCACCCCGCTA 58.790 50.000 0.00 0.00 0.00 4.26
186 187 0.331616 AAATAGGCTTTCACCCCGCT 59.668 50.000 0.00 0.00 0.00 5.52
187 188 0.738975 GAAATAGGCTTTCACCCCGC 59.261 55.000 0.00 0.00 0.00 6.13
188 189 1.014352 CGAAATAGGCTTTCACCCCG 58.986 55.000 0.00 0.00 0.00 5.73
189 190 2.289565 CTCGAAATAGGCTTTCACCCC 58.710 52.381 0.00 0.00 0.00 4.95
190 191 2.093128 TCCTCGAAATAGGCTTTCACCC 60.093 50.000 0.00 0.00 36.51 4.61
191 192 3.198872 CTCCTCGAAATAGGCTTTCACC 58.801 50.000 0.00 0.00 36.51 4.02
192 193 3.198872 CCTCCTCGAAATAGGCTTTCAC 58.801 50.000 0.00 0.00 36.51 3.18
193 194 2.170607 CCCTCCTCGAAATAGGCTTTCA 59.829 50.000 0.00 0.00 36.51 2.69
194 195 2.434702 TCCCTCCTCGAAATAGGCTTTC 59.565 50.000 0.00 0.00 36.51 2.62
195 196 2.436173 CTCCCTCCTCGAAATAGGCTTT 59.564 50.000 0.00 0.00 36.51 3.51
196 197 2.043227 CTCCCTCCTCGAAATAGGCTT 58.957 52.381 0.00 0.00 36.51 4.35
197 198 1.218196 TCTCCCTCCTCGAAATAGGCT 59.782 52.381 0.00 0.00 36.51 4.58
198 199 1.616374 CTCTCCCTCCTCGAAATAGGC 59.384 57.143 2.52 0.00 36.51 3.93
199 200 2.243810 CCTCTCCCTCCTCGAAATAGG 58.756 57.143 1.26 1.26 38.06 2.57
200 201 2.625790 CACCTCTCCCTCCTCGAAATAG 59.374 54.545 0.00 0.00 0.00 1.73
201 202 2.243994 TCACCTCTCCCTCCTCGAAATA 59.756 50.000 0.00 0.00 0.00 1.40
202 203 1.007238 TCACCTCTCCCTCCTCGAAAT 59.993 52.381 0.00 0.00 0.00 2.17
203 204 0.408309 TCACCTCTCCCTCCTCGAAA 59.592 55.000 0.00 0.00 0.00 3.46
204 205 0.033991 CTCACCTCTCCCTCCTCGAA 60.034 60.000 0.00 0.00 0.00 3.71
205 206 1.208844 ACTCACCTCTCCCTCCTCGA 61.209 60.000 0.00 0.00 0.00 4.04
206 207 0.547075 TACTCACCTCTCCCTCCTCG 59.453 60.000 0.00 0.00 0.00 4.63
207 208 1.847737 TCTACTCACCTCTCCCTCCTC 59.152 57.143 0.00 0.00 0.00 3.71
208 209 1.988539 TCTACTCACCTCTCCCTCCT 58.011 55.000 0.00 0.00 0.00 3.69
209 210 2.242708 TCTTCTACTCACCTCTCCCTCC 59.757 54.545 0.00 0.00 0.00 4.30
210 211 3.551846 CTCTTCTACTCACCTCTCCCTC 58.448 54.545 0.00 0.00 0.00 4.30
211 212 2.243736 CCTCTTCTACTCACCTCTCCCT 59.756 54.545 0.00 0.00 0.00 4.20
212 213 2.024751 ACCTCTTCTACTCACCTCTCCC 60.025 54.545 0.00 0.00 0.00 4.30
213 214 3.020984 CACCTCTTCTACTCACCTCTCC 58.979 54.545 0.00 0.00 0.00 3.71
214 215 2.425668 GCACCTCTTCTACTCACCTCTC 59.574 54.545 0.00 0.00 0.00 3.20
215 216 2.452505 GCACCTCTTCTACTCACCTCT 58.547 52.381 0.00 0.00 0.00 3.69
216 217 1.478916 GGCACCTCTTCTACTCACCTC 59.521 57.143 0.00 0.00 0.00 3.85
217 218 1.077993 AGGCACCTCTTCTACTCACCT 59.922 52.381 0.00 0.00 0.00 4.00
218 219 1.205893 CAGGCACCTCTTCTACTCACC 59.794 57.143 0.00 0.00 0.00 4.02
219 220 2.165437 CTCAGGCACCTCTTCTACTCAC 59.835 54.545 0.00 0.00 0.00 3.51
220 221 2.451490 CTCAGGCACCTCTTCTACTCA 58.549 52.381 0.00 0.00 0.00 3.41
221 222 1.754226 CCTCAGGCACCTCTTCTACTC 59.246 57.143 0.00 0.00 0.00 2.59
222 223 1.859302 CCTCAGGCACCTCTTCTACT 58.141 55.000 0.00 0.00 0.00 2.57
235 236 3.554342 CGGGAGGGATGCCTCAGG 61.554 72.222 31.62 19.70 38.48 3.86
236 237 2.066393 TTCGGGAGGGATGCCTCAG 61.066 63.158 31.62 24.27 38.48 3.35
237 238 2.040442 TTCGGGAGGGATGCCTCA 59.960 61.111 31.62 11.50 38.48 3.86
238 239 2.317149 CTGTTCGGGAGGGATGCCTC 62.317 65.000 24.37 24.37 36.20 4.70
239 240 2.285368 TGTTCGGGAGGGATGCCT 60.285 61.111 4.97 4.97 0.00 4.75
240 241 2.190578 CTGTTCGGGAGGGATGCC 59.809 66.667 0.00 0.00 0.00 4.40
241 242 2.190578 CCTGTTCGGGAGGGATGC 59.809 66.667 0.00 0.00 0.00 3.91
242 243 2.190578 GCCTGTTCGGGAGGGATG 59.809 66.667 1.37 0.00 0.00 3.51
243 244 2.866523 TACGCCTGTTCGGGAGGGAT 62.867 60.000 1.37 0.00 0.00 3.85
244 245 2.866523 ATACGCCTGTTCGGGAGGGA 62.867 60.000 1.37 0.00 0.00 4.20
245 246 2.432300 ATACGCCTGTTCGGGAGGG 61.432 63.158 1.37 0.00 0.00 4.30
246 247 1.227263 CATACGCCTGTTCGGGAGG 60.227 63.158 1.37 0.00 0.00 4.30
247 248 0.108329 AACATACGCCTGTTCGGGAG 60.108 55.000 1.37 0.67 34.26 4.30
248 249 0.390603 CAACATACGCCTGTTCGGGA 60.391 55.000 1.37 0.00 37.25 5.14
249 250 0.390603 TCAACATACGCCTGTTCGGG 60.391 55.000 0.54 0.00 37.25 5.14
250 251 0.719465 GTCAACATACGCCTGTTCGG 59.281 55.000 0.54 0.00 37.25 4.30
251 252 1.424403 TGTCAACATACGCCTGTTCG 58.576 50.000 0.54 0.00 37.25 3.95
252 253 4.868171 TCTATTGTCAACATACGCCTGTTC 59.132 41.667 0.54 0.00 37.25 3.18
253 254 4.827692 TCTATTGTCAACATACGCCTGTT 58.172 39.130 0.00 0.00 39.91 3.16
254 255 4.465632 TCTATTGTCAACATACGCCTGT 57.534 40.909 0.00 0.00 0.00 4.00
255 256 6.447162 TCTATCTATTGTCAACATACGCCTG 58.553 40.000 0.00 0.00 0.00 4.85
256 257 6.490381 TCTCTATCTATTGTCAACATACGCCT 59.510 38.462 0.00 0.00 0.00 5.52
257 258 6.678878 TCTCTATCTATTGTCAACATACGCC 58.321 40.000 0.00 0.00 0.00 5.68
258 259 8.076781 TCTTCTCTATCTATTGTCAACATACGC 58.923 37.037 0.00 0.00 0.00 4.42
259 260 9.605955 CTCTTCTCTATCTATTGTCAACATACG 57.394 37.037 0.00 0.00 0.00 3.06
262 263 9.194972 TGTCTCTTCTCTATCTATTGTCAACAT 57.805 33.333 0.00 0.00 0.00 2.71
263 264 8.581253 TGTCTCTTCTCTATCTATTGTCAACA 57.419 34.615 0.00 0.00 0.00 3.33
264 265 9.462174 CATGTCTCTTCTCTATCTATTGTCAAC 57.538 37.037 0.00 0.00 0.00 3.18
265 266 8.637099 CCATGTCTCTTCTCTATCTATTGTCAA 58.363 37.037 0.00 0.00 0.00 3.18
266 267 7.232330 CCCATGTCTCTTCTCTATCTATTGTCA 59.768 40.741 0.00 0.00 0.00 3.58
267 268 7.309744 CCCCATGTCTCTTCTCTATCTATTGTC 60.310 44.444 0.00 0.00 0.00 3.18
268 269 6.496565 CCCCATGTCTCTTCTCTATCTATTGT 59.503 42.308 0.00 0.00 0.00 2.71
269 270 6.496565 ACCCCATGTCTCTTCTCTATCTATTG 59.503 42.308 0.00 0.00 0.00 1.90
270 271 6.629156 ACCCCATGTCTCTTCTCTATCTATT 58.371 40.000 0.00 0.00 0.00 1.73
271 272 6.226272 ACCCCATGTCTCTTCTCTATCTAT 57.774 41.667 0.00 0.00 0.00 1.98
272 273 5.671463 ACCCCATGTCTCTTCTCTATCTA 57.329 43.478 0.00 0.00 0.00 1.98
273 274 4.551215 ACCCCATGTCTCTTCTCTATCT 57.449 45.455 0.00 0.00 0.00 1.98
274 275 4.202305 CCAACCCCATGTCTCTTCTCTATC 60.202 50.000 0.00 0.00 0.00 2.08
275 276 3.713764 CCAACCCCATGTCTCTTCTCTAT 59.286 47.826 0.00 0.00 0.00 1.98
276 277 3.107601 CCAACCCCATGTCTCTTCTCTA 58.892 50.000 0.00 0.00 0.00 2.43
277 278 1.912043 CCAACCCCATGTCTCTTCTCT 59.088 52.381 0.00 0.00 0.00 3.10
278 279 1.909302 TCCAACCCCATGTCTCTTCTC 59.091 52.381 0.00 0.00 0.00 2.87
279 280 1.630878 GTCCAACCCCATGTCTCTTCT 59.369 52.381 0.00 0.00 0.00 2.85
280 281 1.351017 TGTCCAACCCCATGTCTCTTC 59.649 52.381 0.00 0.00 0.00 2.87
281 282 1.073923 GTGTCCAACCCCATGTCTCTT 59.926 52.381 0.00 0.00 0.00 2.85
282 283 0.693049 GTGTCCAACCCCATGTCTCT 59.307 55.000 0.00 0.00 0.00 3.10
283 284 0.400213 TGTGTCCAACCCCATGTCTC 59.600 55.000 0.00 0.00 0.00 3.36
284 285 0.110486 GTGTGTCCAACCCCATGTCT 59.890 55.000 0.00 0.00 0.00 3.41
285 286 0.893727 GGTGTGTCCAACCCCATGTC 60.894 60.000 0.00 0.00 35.97 3.06
286 287 1.152830 GGTGTGTCCAACCCCATGT 59.847 57.895 0.00 0.00 35.97 3.21
287 288 4.095590 GGTGTGTCCAACCCCATG 57.904 61.111 0.00 0.00 35.97 3.66
293 294 1.744320 GCAAAGGGGGTGTGTCCAAC 61.744 60.000 0.00 0.00 38.11 3.77
294 295 1.456705 GCAAAGGGGGTGTGTCCAA 60.457 57.895 0.00 0.00 38.11 3.53
295 296 1.063070 TAGCAAAGGGGGTGTGTCCA 61.063 55.000 0.00 0.00 38.11 4.02
296 297 0.111639 TTAGCAAAGGGGGTGTGTCC 59.888 55.000 0.00 0.00 0.00 4.02
297 298 1.818674 CATTAGCAAAGGGGGTGTGTC 59.181 52.381 0.00 0.00 0.00 3.67
298 299 1.427368 TCATTAGCAAAGGGGGTGTGT 59.573 47.619 0.00 0.00 0.00 3.72
299 300 1.818674 GTCATTAGCAAAGGGGGTGTG 59.181 52.381 0.00 0.00 0.00 3.82
300 301 1.710809 AGTCATTAGCAAAGGGGGTGT 59.289 47.619 0.00 0.00 0.00 4.16
301 302 2.514458 AGTCATTAGCAAAGGGGGTG 57.486 50.000 0.00 0.00 0.00 4.61
302 303 4.229582 TGAATAGTCATTAGCAAAGGGGGT 59.770 41.667 0.00 0.00 0.00 4.95
303 304 4.792068 TGAATAGTCATTAGCAAAGGGGG 58.208 43.478 0.00 0.00 0.00 5.40
314 315 8.080417 GCACATGCTAATCAATGAATAGTCATT 58.920 33.333 12.46 12.46 45.08 2.57
315 316 7.591165 GCACATGCTAATCAATGAATAGTCAT 58.409 34.615 0.00 0.00 41.25 3.06
316 317 6.962686 GCACATGCTAATCAATGAATAGTCA 58.037 36.000 7.14 0.00 36.71 3.41
346 347 8.953368 AATCGTTCGGAATTAATTAGTAGGTT 57.047 30.769 0.00 0.00 0.00 3.50
347 348 9.688592 CTAATCGTTCGGAATTAATTAGTAGGT 57.311 33.333 0.00 0.00 0.00 3.08
348 349 8.645487 GCTAATCGTTCGGAATTAATTAGTAGG 58.355 37.037 19.55 0.00 32.10 3.18
349 350 9.188588 TGCTAATCGTTCGGAATTAATTAGTAG 57.811 33.333 19.55 0.00 32.10 2.57
350 351 9.701098 ATGCTAATCGTTCGGAATTAATTAGTA 57.299 29.630 19.55 17.60 32.10 1.82
351 352 8.603242 ATGCTAATCGTTCGGAATTAATTAGT 57.397 30.769 19.55 8.11 32.10 2.24
352 353 8.926710 AGATGCTAATCGTTCGGAATTAATTAG 58.073 33.333 16.91 16.91 37.92 1.73
353 354 8.827177 AGATGCTAATCGTTCGGAATTAATTA 57.173 30.769 0.00 0.00 37.92 1.40
354 355 7.657761 AGAGATGCTAATCGTTCGGAATTAATT 59.342 33.333 0.00 0.00 37.92 1.40
355 356 7.155328 AGAGATGCTAATCGTTCGGAATTAAT 58.845 34.615 0.00 0.00 37.92 1.40
356 357 6.513180 AGAGATGCTAATCGTTCGGAATTAA 58.487 36.000 0.00 0.00 37.92 1.40
357 358 6.085555 AGAGATGCTAATCGTTCGGAATTA 57.914 37.500 0.00 0.00 37.92 1.40
358 359 4.950050 AGAGATGCTAATCGTTCGGAATT 58.050 39.130 0.00 0.00 37.92 2.17
359 360 4.592485 AGAGATGCTAATCGTTCGGAAT 57.408 40.909 0.00 0.00 37.92 3.01
360 361 5.509716 TTAGAGATGCTAATCGTTCGGAA 57.490 39.130 0.00 0.00 37.92 4.30
361 362 4.556898 GCTTAGAGATGCTAATCGTTCGGA 60.557 45.833 0.00 0.00 38.36 4.55
362 363 3.670991 GCTTAGAGATGCTAATCGTTCGG 59.329 47.826 0.00 0.00 38.36 4.30
363 364 4.290969 TGCTTAGAGATGCTAATCGTTCG 58.709 43.478 0.00 0.00 38.36 3.95
364 365 6.589830 TTTGCTTAGAGATGCTAATCGTTC 57.410 37.500 0.00 0.00 38.36 3.95
365 366 6.595716 ACTTTTGCTTAGAGATGCTAATCGTT 59.404 34.615 0.00 0.00 38.36 3.85
366 367 6.036517 CACTTTTGCTTAGAGATGCTAATCGT 59.963 38.462 0.00 0.00 38.36 3.73
367 368 6.417327 CACTTTTGCTTAGAGATGCTAATCG 58.583 40.000 0.00 0.00 38.36 3.34
368 369 6.197981 GCACTTTTGCTTAGAGATGCTAATC 58.802 40.000 0.00 0.00 46.17 1.75
369 370 6.129053 GCACTTTTGCTTAGAGATGCTAAT 57.871 37.500 0.00 0.00 46.17 1.73
370 371 5.551760 GCACTTTTGCTTAGAGATGCTAA 57.448 39.130 0.00 0.00 46.17 3.09
377 378 9.523755 GCTAATAGCTGGCACTTTTGCTTAGAG 62.524 44.444 4.79 1.04 42.74 2.43
378 379 7.841735 GCTAATAGCTGGCACTTTTGCTTAGA 61.842 42.308 4.79 0.00 42.74 2.10
379 380 5.731686 GCTAATAGCTGGCACTTTTGCTTAG 60.732 44.000 4.79 2.52 42.74 2.18
380 381 4.096382 GCTAATAGCTGGCACTTTTGCTTA 59.904 41.667 4.79 0.00 42.74 3.09
381 382 3.119352 GCTAATAGCTGGCACTTTTGCTT 60.119 43.478 4.79 0.00 42.74 3.91
382 383 2.424956 GCTAATAGCTGGCACTTTTGCT 59.575 45.455 4.79 3.59 42.74 3.91
383 384 2.480244 GGCTAATAGCTGGCACTTTTGC 60.480 50.000 12.41 0.00 44.18 3.68
384 385 3.019564 AGGCTAATAGCTGGCACTTTTG 58.980 45.455 12.41 0.00 41.99 2.44
385 386 3.372440 AGGCTAATAGCTGGCACTTTT 57.628 42.857 12.41 0.00 41.99 2.27
386 387 3.199946 TGTAGGCTAATAGCTGGCACTTT 59.800 43.478 12.41 0.00 41.99 2.66
387 388 2.771943 TGTAGGCTAATAGCTGGCACTT 59.228 45.455 12.41 0.00 41.99 3.16
388 389 2.398588 TGTAGGCTAATAGCTGGCACT 58.601 47.619 12.41 2.91 41.99 4.40
389 390 2.872858 GTTGTAGGCTAATAGCTGGCAC 59.127 50.000 12.41 5.83 41.99 5.01
390 391 2.771943 AGTTGTAGGCTAATAGCTGGCA 59.228 45.455 12.41 5.77 41.99 4.92
391 392 3.477210 AGTTGTAGGCTAATAGCTGGC 57.523 47.619 12.41 3.30 41.99 4.85
392 393 6.597832 AGATAGTTGTAGGCTAATAGCTGG 57.402 41.667 12.41 0.00 41.99 4.85
393 394 7.928706 ACAAAGATAGTTGTAGGCTAATAGCTG 59.071 37.037 12.41 0.00 39.51 4.24
394 395 8.024145 ACAAAGATAGTTGTAGGCTAATAGCT 57.976 34.615 12.41 0.00 39.51 3.32
395 396 8.145122 AGACAAAGATAGTTGTAGGCTAATAGC 58.855 37.037 3.17 3.17 41.78 2.97
396 397 9.469807 CAGACAAAGATAGTTGTAGGCTAATAG 57.530 37.037 0.00 0.00 41.78 1.73
397 398 8.421784 CCAGACAAAGATAGTTGTAGGCTAATA 58.578 37.037 0.00 0.00 41.78 0.98
398 399 7.275920 CCAGACAAAGATAGTTGTAGGCTAAT 58.724 38.462 0.00 0.00 41.78 1.73
399 400 6.351881 CCCAGACAAAGATAGTTGTAGGCTAA 60.352 42.308 0.00 0.00 41.78 3.09
400 401 5.128827 CCCAGACAAAGATAGTTGTAGGCTA 59.871 44.000 0.00 0.00 41.78 3.93
401 402 4.080863 CCCAGACAAAGATAGTTGTAGGCT 60.081 45.833 0.00 0.00 41.78 4.58
402 403 4.192317 CCCAGACAAAGATAGTTGTAGGC 58.808 47.826 0.00 0.00 41.78 3.93
403 404 5.422214 ACCCAGACAAAGATAGTTGTAGG 57.578 43.478 0.00 0.00 41.78 3.18
404 405 9.449719 AATAAACCCAGACAAAGATAGTTGTAG 57.550 33.333 0.00 0.00 41.78 2.74
406 407 9.449719 CTAATAAACCCAGACAAAGATAGTTGT 57.550 33.333 0.00 0.00 44.38 3.32
407 408 9.449719 ACTAATAAACCCAGACAAAGATAGTTG 57.550 33.333 0.00 0.00 34.52 3.16
408 409 9.668497 GACTAATAAACCCAGACAAAGATAGTT 57.332 33.333 0.00 0.00 0.00 2.24
409 410 8.265764 GGACTAATAAACCCAGACAAAGATAGT 58.734 37.037 0.00 0.00 0.00 2.12
410 411 7.438459 CGGACTAATAAACCCAGACAAAGATAG 59.562 40.741 0.00 0.00 0.00 2.08
411 412 7.093201 ACGGACTAATAAACCCAGACAAAGATA 60.093 37.037 0.00 0.00 0.00 1.98
412 413 6.113411 CGGACTAATAAACCCAGACAAAGAT 58.887 40.000 0.00 0.00 0.00 2.40
413 414 5.012354 ACGGACTAATAAACCCAGACAAAGA 59.988 40.000 0.00 0.00 0.00 2.52
414 415 5.243207 ACGGACTAATAAACCCAGACAAAG 58.757 41.667 0.00 0.00 0.00 2.77
415 416 5.231702 ACGGACTAATAAACCCAGACAAA 57.768 39.130 0.00 0.00 0.00 2.83
416 417 4.895668 ACGGACTAATAAACCCAGACAA 57.104 40.909 0.00 0.00 0.00 3.18
417 418 5.622007 CGTTACGGACTAATAAACCCAGACA 60.622 44.000 0.00 0.00 0.00 3.41
418 419 4.800471 CGTTACGGACTAATAAACCCAGAC 59.200 45.833 0.00 0.00 0.00 3.51
419 420 4.462483 ACGTTACGGACTAATAAACCCAGA 59.538 41.667 10.20 0.00 0.00 3.86
420 421 4.747810 ACGTTACGGACTAATAAACCCAG 58.252 43.478 10.20 0.00 0.00 4.45
421 422 4.799564 ACGTTACGGACTAATAAACCCA 57.200 40.909 10.20 0.00 0.00 4.51
422 423 7.770801 AAATACGTTACGGACTAATAAACCC 57.229 36.000 10.20 0.00 0.00 4.11
423 424 8.116136 CCAAAATACGTTACGGACTAATAAACC 58.884 37.037 10.20 0.00 0.00 3.27
424 425 8.116136 CCCAAAATACGTTACGGACTAATAAAC 58.884 37.037 10.20 0.00 0.00 2.01
425 426 7.821846 ACCCAAAATACGTTACGGACTAATAAA 59.178 33.333 10.20 0.00 0.00 1.40
426 427 7.327214 ACCCAAAATACGTTACGGACTAATAA 58.673 34.615 10.20 0.00 0.00 1.40
427 428 6.872920 ACCCAAAATACGTTACGGACTAATA 58.127 36.000 10.20 0.00 0.00 0.98
428 429 5.733676 ACCCAAAATACGTTACGGACTAAT 58.266 37.500 10.20 0.00 0.00 1.73
429 430 5.146010 ACCCAAAATACGTTACGGACTAA 57.854 39.130 10.20 0.00 0.00 2.24
430 431 4.219507 TGACCCAAAATACGTTACGGACTA 59.780 41.667 10.20 0.00 0.00 2.59
431 432 3.006752 TGACCCAAAATACGTTACGGACT 59.993 43.478 10.20 0.00 0.00 3.85
432 433 3.324993 TGACCCAAAATACGTTACGGAC 58.675 45.455 10.20 0.00 0.00 4.79
433 434 3.674528 TGACCCAAAATACGTTACGGA 57.325 42.857 10.20 0.00 0.00 4.69
434 435 4.213906 AGTTTGACCCAAAATACGTTACGG 59.786 41.667 10.20 0.00 35.03 4.02
435 436 5.347012 AGTTTGACCCAAAATACGTTACG 57.653 39.130 2.19 2.19 35.03 3.18
436 437 7.194962 TCAAAGTTTGACCCAAAATACGTTAC 58.805 34.615 14.35 0.00 35.03 2.50
437 438 7.330900 TCAAAGTTTGACCCAAAATACGTTA 57.669 32.000 14.35 0.00 35.03 3.18
438 439 6.210287 TCAAAGTTTGACCCAAAATACGTT 57.790 33.333 14.35 0.00 35.03 3.99
439 440 5.838531 TCAAAGTTTGACCCAAAATACGT 57.161 34.783 14.35 0.00 35.03 3.57
451 452 7.581213 ACTCAAATATGTGGTCAAAGTTTGA 57.419 32.000 14.35 14.35 37.33 2.69
452 453 7.538678 GCTACTCAAATATGTGGTCAAAGTTTG 59.461 37.037 9.44 9.44 0.00 2.93
453 454 7.230510 TGCTACTCAAATATGTGGTCAAAGTTT 59.769 33.333 0.00 0.00 0.00 2.66
454 455 6.714810 TGCTACTCAAATATGTGGTCAAAGTT 59.285 34.615 0.00 0.00 0.00 2.66
455 456 6.237901 TGCTACTCAAATATGTGGTCAAAGT 58.762 36.000 0.00 0.00 0.00 2.66
456 457 6.741992 TGCTACTCAAATATGTGGTCAAAG 57.258 37.500 0.00 0.00 0.00 2.77
457 458 7.517614 TTTGCTACTCAAATATGTGGTCAAA 57.482 32.000 0.00 0.00 39.58 2.69
458 459 7.517614 TTTTGCTACTCAAATATGTGGTCAA 57.482 32.000 0.00 0.00 43.53 3.18
459 460 7.176515 ACATTTTGCTACTCAAATATGTGGTCA 59.823 33.333 12.62 0.00 43.53 4.02
460 461 7.538575 ACATTTTGCTACTCAAATATGTGGTC 58.461 34.615 12.62 0.00 43.53 4.02
461 462 7.466746 ACATTTTGCTACTCAAATATGTGGT 57.533 32.000 12.62 0.00 43.53 4.16
462 463 9.853555 TTAACATTTTGCTACTCAAATATGTGG 57.146 29.630 13.42 0.00 43.53 4.17
471 472 9.225436 TGACATGTATTAACATTTTGCTACTCA 57.775 29.630 0.00 0.00 44.07 3.41
472 473 9.490663 GTGACATGTATTAACATTTTGCTACTC 57.509 33.333 0.00 0.00 44.07 2.59
473 474 9.008965 TGTGACATGTATTAACATTTTGCTACT 57.991 29.630 0.00 0.00 44.07 2.57
474 475 9.619316 TTGTGACATGTATTAACATTTTGCTAC 57.381 29.630 0.00 0.00 44.07 3.58
475 476 9.838975 CTTGTGACATGTATTAACATTTTGCTA 57.161 29.630 0.00 0.00 44.07 3.49
476 477 8.575589 TCTTGTGACATGTATTAACATTTTGCT 58.424 29.630 0.00 0.00 44.07 3.91
477 478 8.741101 TCTTGTGACATGTATTAACATTTTGC 57.259 30.769 0.00 0.00 44.07 3.68
574 575 8.875168 CCCTAGAAGACCATGATTCTAACTAAT 58.125 37.037 12.88 0.00 37.52 1.73
575 576 7.844779 ACCCTAGAAGACCATGATTCTAACTAA 59.155 37.037 12.88 0.00 37.52 2.24
576 577 7.363031 ACCCTAGAAGACCATGATTCTAACTA 58.637 38.462 12.88 10.78 37.52 2.24
577 578 6.206042 ACCCTAGAAGACCATGATTCTAACT 58.794 40.000 12.88 10.39 37.52 2.24
578 579 6.325286 AGACCCTAGAAGACCATGATTCTAAC 59.675 42.308 12.88 5.49 37.52 2.34
579 580 6.444704 AGACCCTAGAAGACCATGATTCTAA 58.555 40.000 12.88 2.76 37.52 2.10
580 581 6.031964 AGACCCTAGAAGACCATGATTCTA 57.968 41.667 11.88 11.88 37.05 2.10
581 582 4.889780 AGACCCTAGAAGACCATGATTCT 58.110 43.478 11.08 11.08 39.13 2.40
582 583 6.015772 GTCTAGACCCTAGAAGACCATGATTC 60.016 46.154 12.13 0.00 33.74 2.52
583 584 5.836358 GTCTAGACCCTAGAAGACCATGATT 59.164 44.000 12.13 0.00 33.74 2.57
584 585 5.103473 TGTCTAGACCCTAGAAGACCATGAT 60.103 44.000 20.11 0.00 38.04 2.45
585 586 4.229812 TGTCTAGACCCTAGAAGACCATGA 59.770 45.833 20.11 0.00 38.04 3.07
586 587 4.537751 TGTCTAGACCCTAGAAGACCATG 58.462 47.826 20.11 0.00 38.04 3.66
587 588 4.883021 TGTCTAGACCCTAGAAGACCAT 57.117 45.455 20.11 0.00 38.04 3.55
588 589 4.202641 TGTTGTCTAGACCCTAGAAGACCA 60.203 45.833 20.11 0.00 38.04 4.02
589 590 4.158209 GTGTTGTCTAGACCCTAGAAGACC 59.842 50.000 20.11 0.00 38.04 3.85
590 591 4.158209 GGTGTTGTCTAGACCCTAGAAGAC 59.842 50.000 20.11 14.33 39.04 3.01
591 592 4.342359 GGTGTTGTCTAGACCCTAGAAGA 58.658 47.826 20.11 3.19 34.10 2.87
592 593 3.128938 CGGTGTTGTCTAGACCCTAGAAG 59.871 52.174 20.11 3.04 36.86 2.85
593 594 3.087031 CGGTGTTGTCTAGACCCTAGAA 58.913 50.000 20.11 4.50 36.86 2.10
594 595 2.040813 ACGGTGTTGTCTAGACCCTAGA 59.959 50.000 20.11 0.00 36.86 2.43
595 596 2.163815 CACGGTGTTGTCTAGACCCTAG 59.836 54.545 20.11 9.07 36.86 3.02
596 597 2.165167 CACGGTGTTGTCTAGACCCTA 58.835 52.381 20.11 3.34 36.86 3.53
597 598 0.966920 CACGGTGTTGTCTAGACCCT 59.033 55.000 20.11 2.06 36.86 4.34
598 599 0.037605 CCACGGTGTTGTCTAGACCC 60.038 60.000 20.11 12.44 36.86 4.46
599 600 0.963962 TCCACGGTGTTGTCTAGACC 59.036 55.000 20.11 6.32 36.84 3.85
600 601 2.673833 CTTCCACGGTGTTGTCTAGAC 58.326 52.381 16.32 16.32 0.00 2.59
601 602 1.000506 GCTTCCACGGTGTTGTCTAGA 59.999 52.381 7.45 0.00 0.00 2.43
602 603 1.429463 GCTTCCACGGTGTTGTCTAG 58.571 55.000 7.45 0.00 0.00 2.43
603 604 0.034337 GGCTTCCACGGTGTTGTCTA 59.966 55.000 7.45 0.00 0.00 2.59
604 605 1.227853 GGCTTCCACGGTGTTGTCT 60.228 57.895 7.45 0.00 0.00 3.41
605 606 0.889186 ATGGCTTCCACGGTGTTGTC 60.889 55.000 7.45 0.00 35.80 3.18
627 628 0.744874 TTTGATAGAGGAGACCCGCG 59.255 55.000 0.00 0.00 37.33 6.46
630 631 1.202545 GCCGTTTGATAGAGGAGACCC 60.203 57.143 0.00 0.00 0.00 4.46
646 647 1.081242 CTACCGTACGTGTTGCCGT 60.081 57.895 15.21 5.44 44.50 5.68
661 662 5.932883 AGGAAGAATGAAACTTCGGAACTAC 59.067 40.000 0.00 0.00 0.00 2.73
662 663 6.110411 AGGAAGAATGAAACTTCGGAACTA 57.890 37.500 0.00 0.00 0.00 2.24
671 672 5.346270 AGGTCTAGGAGGAAGAATGAAACT 58.654 41.667 0.00 0.00 0.00 2.66
673 674 5.342017 TGAGGTCTAGGAGGAAGAATGAAA 58.658 41.667 0.00 0.00 0.00 2.69
688 689 1.549170 GAGGGAAAACGCTGAGGTCTA 59.451 52.381 0.00 0.00 0.00 2.59
690 691 0.034896 TGAGGGAAAACGCTGAGGTC 59.965 55.000 0.00 0.00 0.00 3.85
693 694 1.089920 CCATGAGGGAAAACGCTGAG 58.910 55.000 0.00 0.00 40.01 3.35
694 695 0.690192 TCCATGAGGGAAAACGCTGA 59.310 50.000 0.00 0.00 44.80 4.26
695 696 3.248043 TCCATGAGGGAAAACGCTG 57.752 52.632 0.00 0.00 44.80 5.18
728 729 4.978186 TGTACTGTACGAGTAACATCAGC 58.022 43.478 12.87 0.00 38.96 4.26
736 737 1.805943 TGCGCTTGTACTGTACGAGTA 59.194 47.619 27.56 16.29 41.36 2.59
737 738 0.594602 TGCGCTTGTACTGTACGAGT 59.405 50.000 27.56 0.00 41.36 4.18
738 739 1.135774 TCTGCGCTTGTACTGTACGAG 60.136 52.381 24.66 24.66 42.05 4.18
739 740 0.876399 TCTGCGCTTGTACTGTACGA 59.124 50.000 9.73 10.26 0.00 3.43
740 741 1.649171 CTTCTGCGCTTGTACTGTACG 59.351 52.381 9.73 2.69 0.00 3.67
755 756 1.746615 CGGGTGCATGTCCCTTCTG 60.747 63.158 20.28 6.49 42.56 3.02
825 833 1.976045 AGCGTTACGTTACGTTTACCG 59.024 47.619 25.50 13.70 43.22 4.02
826 834 2.341464 GGAGCGTTACGTTACGTTTACC 59.659 50.000 25.50 18.84 43.22 2.85
827 835 2.341464 GGGAGCGTTACGTTACGTTTAC 59.659 50.000 25.50 16.86 43.22 2.01
828 836 2.227865 AGGGAGCGTTACGTTACGTTTA 59.772 45.455 25.50 1.65 43.22 2.01
829 837 1.000274 AGGGAGCGTTACGTTACGTTT 60.000 47.619 25.50 15.64 43.22 3.60
830 838 0.598065 AGGGAGCGTTACGTTACGTT 59.402 50.000 25.50 21.15 43.22 3.99
888 908 0.320421 AATGACCGGAACACGTGAGG 60.320 55.000 25.01 20.27 42.24 3.86
923 943 0.965363 CCCCTGCGGCAACAATAAGT 60.965 55.000 3.44 0.00 0.00 2.24
924 944 1.809207 CCCCTGCGGCAACAATAAG 59.191 57.895 3.44 0.00 0.00 1.73
946 966 3.545481 GCACGCGTCATGGACTCG 61.545 66.667 9.86 7.15 44.71 4.18
1095 1115 2.001558 AGTACAGTACCTGGGAGGAGT 58.998 52.381 7.13 0.00 37.67 3.85
1111 1131 2.476854 CGCGTACAGAACTGGGTAGTAC 60.477 54.545 0.00 0.00 35.69 2.73
1112 1132 1.739466 CGCGTACAGAACTGGGTAGTA 59.261 52.381 0.00 0.00 35.69 1.82
1113 1133 0.524862 CGCGTACAGAACTGGGTAGT 59.475 55.000 0.00 0.00 39.32 2.73
1114 1134 0.801067 GCGCGTACAGAACTGGGTAG 60.801 60.000 8.43 0.00 34.19 3.18
1115 1135 1.213537 GCGCGTACAGAACTGGGTA 59.786 57.895 8.43 0.00 34.19 3.69
1122 1142 1.803922 CACATCGGCGCGTACAGAA 60.804 57.895 8.43 0.00 0.00 3.02
1131 1151 1.142185 CTACTCTGCACACATCGGCG 61.142 60.000 0.00 0.00 0.00 6.46
1153 1173 4.741781 AAAGACGCGCGCACATGC 62.742 61.111 32.58 14.37 37.78 4.06
1154 1174 2.567470 ATCAAAGACGCGCGCACATG 62.567 55.000 32.58 23.26 0.00 3.21
1155 1175 2.390599 ATCAAAGACGCGCGCACAT 61.391 52.632 32.58 16.22 0.00 3.21
1189 1209 2.842485 CGTACGTTAACTAGCAAGACCG 59.158 50.000 7.22 0.00 0.00 4.79
1195 1215 1.135315 CCCTGCGTACGTTAACTAGCA 60.135 52.381 17.90 8.63 0.00 3.49
1196 1216 1.135286 ACCCTGCGTACGTTAACTAGC 60.135 52.381 17.90 4.53 0.00 3.42
1197 1217 2.523015 CACCCTGCGTACGTTAACTAG 58.477 52.381 17.90 6.06 0.00 2.57
1198 1218 1.202114 CCACCCTGCGTACGTTAACTA 59.798 52.381 17.90 0.00 0.00 2.24
1241 1264 0.536260 CAGAGAGCAGGGACTCCTTG 59.464 60.000 2.71 2.71 42.67 3.61
1331 1354 0.741221 GTTCCGAGTCCCACATGAGC 60.741 60.000 0.00 0.00 0.00 4.26
1336 1359 3.998672 GCGGTTCCGAGTCCCACA 61.999 66.667 15.69 0.00 0.00 4.17
1369 1392 1.609794 GAGGAGAAGGGACACCGGT 60.610 63.158 0.00 0.00 43.47 5.28
1423 1446 4.684703 CGAAACCGATACAAGTCTGAAGTT 59.315 41.667 0.00 0.00 0.00 2.66
1428 1451 3.226346 TCCGAAACCGATACAAGTCTG 57.774 47.619 0.00 0.00 0.00 3.51
1457 1496 9.517868 ACTCATGTAGTAGTACAAGTCTAAAGT 57.482 33.333 14.26 6.49 42.54 2.66
1472 1511 8.523658 GCCATCTAATGATGTACTCATGTAGTA 58.476 37.037 8.10 0.00 44.03 1.82
1473 1512 7.382110 GCCATCTAATGATGTACTCATGTAGT 58.618 38.462 8.10 0.00 44.03 2.73
1474 1513 6.815641 GGCCATCTAATGATGTACTCATGTAG 59.184 42.308 0.00 10.58 44.03 2.74
1475 1514 6.572314 CGGCCATCTAATGATGTACTCATGTA 60.572 42.308 2.24 4.23 44.03 2.29
1476 1515 5.555017 GGCCATCTAATGATGTACTCATGT 58.445 41.667 0.00 3.54 44.03 3.21
1477 1516 4.628766 CGGCCATCTAATGATGTACTCATG 59.371 45.833 2.24 0.00 44.03 3.07
1478 1517 4.825422 CGGCCATCTAATGATGTACTCAT 58.175 43.478 2.24 0.00 46.87 2.90
1479 1518 3.554960 GCGGCCATCTAATGATGTACTCA 60.555 47.826 2.24 0.00 46.38 3.41
1480 1519 2.996621 GCGGCCATCTAATGATGTACTC 59.003 50.000 2.24 0.00 46.38 2.59
1481 1520 2.289694 GGCGGCCATCTAATGATGTACT 60.290 50.000 15.62 0.00 46.38 2.73
1482 1521 2.076863 GGCGGCCATCTAATGATGTAC 58.923 52.381 15.62 0.00 46.38 2.90
1483 1522 1.977854 AGGCGGCCATCTAATGATGTA 59.022 47.619 23.09 0.00 46.38 2.29
1484 1523 0.767375 AGGCGGCCATCTAATGATGT 59.233 50.000 23.09 0.00 46.38 3.06
1486 1525 1.059098 TGAGGCGGCCATCTAATGAT 58.941 50.000 23.09 0.00 0.00 2.45
1487 1526 0.106708 GTGAGGCGGCCATCTAATGA 59.893 55.000 23.09 0.00 0.00 2.57
1488 1527 0.107456 AGTGAGGCGGCCATCTAATG 59.893 55.000 23.09 0.00 0.00 1.90
1489 1528 0.394565 GAGTGAGGCGGCCATCTAAT 59.605 55.000 23.09 3.03 0.00 1.73
1527 1566 7.327214 ACCTGTCAAACTATTTTCTTTGCAAA 58.673 30.769 12.14 12.14 0.00 3.68
1528 1567 6.872920 ACCTGTCAAACTATTTTCTTTGCAA 58.127 32.000 0.00 0.00 0.00 4.08
1529 1568 6.463995 ACCTGTCAAACTATTTTCTTTGCA 57.536 33.333 0.00 0.00 0.00 4.08
1530 1569 7.277760 ACAAACCTGTCAAACTATTTTCTTTGC 59.722 33.333 0.00 0.00 0.00 3.68
1561 1600 1.730501 ATCAGTCGTGCTGTTCCATG 58.269 50.000 8.95 0.00 45.23 3.66
1575 1614 3.157087 GTTCCATGAACCACCAATCAGT 58.843 45.455 0.00 0.00 36.65 3.41
1609 1648 8.471361 TGAATCGCATAATGCAAAAATGTAAA 57.529 26.923 0.00 0.00 45.36 2.01
1612 1651 6.964741 TTGAATCGCATAATGCAAAAATGT 57.035 29.167 0.00 0.00 45.36 2.71
1621 1660 6.732154 AGAGGAATGTTTGAATCGCATAATG 58.268 36.000 0.00 0.00 0.00 1.90
1646 1685 0.462047 GGCTCCGACCCTGTTACATG 60.462 60.000 0.00 0.00 0.00 3.21
1685 1724 6.398095 TCTTGTCTATCTTCTTCGATTTGCA 58.602 36.000 0.00 0.00 0.00 4.08
1811 1894 1.336240 GCTGCAGCGAAATCCTTGTTT 60.336 47.619 25.23 0.00 0.00 2.83
1843 1926 6.955963 CGAGGAATTTACACGAGAGAAAATTG 59.044 38.462 0.00 0.00 34.36 2.32
2028 2142 2.651361 CGAGTCTTGACGGTGGCT 59.349 61.111 0.00 0.00 0.00 4.75
2127 2241 4.060667 CCGGGTCCCATGGGCTTT 62.061 66.667 27.41 0.00 34.68 3.51
2349 2466 5.338365 CAGAGCTTCTGTTTATGCATTTCC 58.662 41.667 3.54 0.00 39.58 3.13
2401 2544 1.942657 CGGCATGGATCGACAAGAAAT 59.057 47.619 0.00 0.00 0.00 2.17
2411 2554 2.172483 ATCGGGCTACGGCATGGATC 62.172 60.000 0.00 0.00 44.45 3.36
2416 2559 2.265467 AAACCATCGGGCTACGGCAT 62.265 55.000 1.81 0.00 44.45 4.40
2539 2682 0.667993 CAAAAGCTGCCTCCGTTTCA 59.332 50.000 0.00 0.00 0.00 2.69
2540 2683 0.664466 GCAAAAGCTGCCTCCGTTTC 60.664 55.000 0.00 0.00 46.13 2.78
2552 2696 9.816354 TTAATTATTAATTGAGGAGGCAAAAGC 57.184 29.630 11.16 0.00 32.38 3.51
2603 2747 3.658709 TCGGTTTTTGCATGATTTTCCC 58.341 40.909 0.00 0.00 0.00 3.97
2604 2748 5.866633 TGTATCGGTTTTTGCATGATTTTCC 59.133 36.000 0.00 0.00 0.00 3.13
2613 2757 5.635417 TGATGATTGTATCGGTTTTTGCA 57.365 34.783 0.00 0.00 0.00 4.08
2623 2767 8.072567 GTCTGCTTATGGTTTGATGATTGTATC 58.927 37.037 0.00 0.00 0.00 2.24
2633 2777 5.011635 TGTGAGTAGTCTGCTTATGGTTTGA 59.988 40.000 0.00 0.00 0.00 2.69
2634 2778 5.237815 TGTGAGTAGTCTGCTTATGGTTTG 58.762 41.667 0.00 0.00 0.00 2.93
2635 2779 5.483685 TGTGAGTAGTCTGCTTATGGTTT 57.516 39.130 0.00 0.00 0.00 3.27
2636 2780 5.483685 TTGTGAGTAGTCTGCTTATGGTT 57.516 39.130 0.00 0.00 0.00 3.67
2637 2781 5.483685 TTTGTGAGTAGTCTGCTTATGGT 57.516 39.130 0.00 0.00 0.00 3.55
2638 2782 5.220739 GCATTTGTGAGTAGTCTGCTTATGG 60.221 44.000 0.00 0.00 0.00 2.74
2639 2783 5.583854 AGCATTTGTGAGTAGTCTGCTTATG 59.416 40.000 5.63 2.19 35.06 1.90
2640 2784 5.583854 CAGCATTTGTGAGTAGTCTGCTTAT 59.416 40.000 8.18 0.00 36.41 1.73
2696 2840 7.811713 GCTTGTGCTGATAGAGAAAAAGAAAAT 59.188 33.333 0.00 0.00 36.03 1.82
2737 2881 9.167311 GTTCTTGGATCAGACTTGTATAATGTT 57.833 33.333 0.00 0.00 0.00 2.71
2752 2896 6.826231 TCGGCTTAAATAATGTTCTTGGATCA 59.174 34.615 0.00 0.00 0.00 2.92
2792 2937 4.954875 AGCTCAATAGGAATGCTACTGTC 58.045 43.478 0.00 0.00 31.71 3.51
2804 2949 6.294397 GGGCAATAGAAATGAAGCTCAATAGG 60.294 42.308 0.00 0.00 0.00 2.57
2958 3104 2.128853 CTTGAAATGCCGTGTGCCGT 62.129 55.000 0.00 0.00 40.16 5.68
2966 3112 0.804544 CATGCCTGCTTGAAATGCCG 60.805 55.000 0.00 0.00 35.91 5.69
3122 3268 1.219124 GCGAGAACAGATGGAGCCA 59.781 57.895 0.00 0.00 0.00 4.75
3130 3276 3.802613 GCTGAAGAGCGAGAACAGA 57.197 52.632 0.00 0.00 34.87 3.41
3164 3310 3.190849 CTGATGCCGCACAGGACG 61.191 66.667 12.51 0.00 45.00 4.79
3250 3404 9.064706 CATCAGATGCTGTAGGAGATTTTAATT 57.935 33.333 0.00 0.00 32.61 1.40
3281 3435 6.183360 GGCAAGATAAAAGCACACAGTATCAT 60.183 38.462 0.00 0.00 0.00 2.45
3321 3475 3.194542 CGAGTGACTCATTTTCTCTCCCT 59.805 47.826 13.67 0.00 32.35 4.20
3323 3477 4.181309 ACGAGTGACTCATTTTCTCTCC 57.819 45.455 13.67 0.00 32.35 3.71
3342 3496 4.695217 TGGCTCCTATTTTTGCTAAACG 57.305 40.909 0.00 0.00 0.00 3.60
3353 3507 4.723789 TCTTCCTCTGAAATGGCTCCTATT 59.276 41.667 0.00 0.00 0.00 1.73
3367 3521 3.672808 ACTCTGTTTGCATCTTCCTCTG 58.327 45.455 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.