Multiple sequence alignment - TraesCS6B01G192400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G192400 chr6B 100.000 6295 0 0 439 6733 226405437 226399143 0.000000e+00 11625.0
1 TraesCS6B01G192400 chr6B 100.000 116 0 0 1 116 226405875 226405760 1.470000e-51 215.0
2 TraesCS6B01G192400 chr6B 90.411 73 5 1 2161 2233 75961421 75961351 2.000000e-15 95.3
3 TraesCS6B01G192400 chr6D 93.239 4304 192 43 444 4672 127388510 127384231 0.000000e+00 6244.0
4 TraesCS6B01G192400 chr6D 94.557 1139 42 10 4667 5787 127384147 127383011 0.000000e+00 1742.0
5 TraesCS6B01G192400 chr6D 80.255 471 36 29 5767 6204 127382997 127382551 1.100000e-77 302.0
6 TraesCS6B01G192400 chr6D 87.302 126 6 6 1 116 127388673 127388548 1.180000e-27 135.0
7 TraesCS6B01G192400 chr6D 92.391 92 7 0 6642 6733 127382105 127382014 1.520000e-26 132.0
8 TraesCS6B01G192400 chr6A 92.681 4304 181 43 450 4669 150964531 150968784 0.000000e+00 6080.0
9 TraesCS6B01G192400 chr6A 93.772 1140 50 10 4667 5787 150968870 150970007 0.000000e+00 1692.0
10 TraesCS6B01G192400 chr6A 79.482 463 42 25 5767 6201 150970021 150970458 5.140000e-71 279.0
11 TraesCS6B01G192400 chr6A 89.130 92 7 2 6642 6733 150979566 150979654 1.980000e-20 111.0
12 TraesCS6B01G192400 chr2A 81.408 355 64 2 5320 5673 668068091 668067738 8.540000e-74 289.0
13 TraesCS6B01G192400 chr7B 86.957 138 16 2 2878 3013 4821782 4821919 3.250000e-33 154.0
14 TraesCS6B01G192400 chr7B 86.957 138 16 2 2878 3013 727193706 727193569 3.250000e-33 154.0
15 TraesCS6B01G192400 chr4B 86.957 138 16 2 2878 3013 646212953 646212816 3.250000e-33 154.0
16 TraesCS6B01G192400 chr3B 86.957 138 16 2 2878 3013 821822605 821822742 3.250000e-33 154.0
17 TraesCS6B01G192400 chr1B 86.957 138 16 2 2878 3013 626110242 626110105 3.250000e-33 154.0
18 TraesCS6B01G192400 chr5B 86.232 138 17 2 2878 3013 101329567 101329704 1.510000e-31 148.0
19 TraesCS6B01G192400 chr3A 86.232 138 17 2 2878 3013 514460079 514459942 1.510000e-31 148.0
20 TraesCS6B01G192400 chr3D 89.796 98 10 0 1843 1940 363802842 363802939 7.090000e-25 126.0
21 TraesCS6B01G192400 chr3D 82.963 135 14 6 1843 1973 363802420 363802549 5.520000e-21 113.0
22 TraesCS6B01G192400 chrUn 88.776 98 11 0 1843 1940 112535966 112535869 3.300000e-23 121.0
23 TraesCS6B01G192400 chr5A 95.122 41 2 0 1843 1883 311327010 311326970 1.570000e-06 65.8
24 TraesCS6B01G192400 chr5A 95.122 41 2 0 1843 1883 311327866 311327826 1.570000e-06 65.8
25 TraesCS6B01G192400 chr5A 95.122 41 2 0 1843 1883 311328721 311328681 1.570000e-06 65.8
26 TraesCS6B01G192400 chr5A 95.122 41 2 0 1843 1883 311329578 311329538 1.570000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G192400 chr6B 226399143 226405875 6732 True 5920.000000 11625 100.0000 1 6733 2 chr6B.!!$R2 6732
1 TraesCS6B01G192400 chr6D 127382014 127388673 6659 True 1711.000000 6244 89.5488 1 6733 5 chr6D.!!$R1 6732
2 TraesCS6B01G192400 chr6A 150964531 150970458 5927 False 2683.666667 6080 88.6450 450 6201 3 chr6A.!!$F2 5751

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
533 553 0.038526 CTCTGGTACGCGGTTCTGTT 60.039 55.000 12.47 0.00 0.00 3.16 F
1007 1039 0.169672 CTGCAACAGGAAATGGAGCG 59.830 55.000 0.00 0.00 36.07 5.03 F
1644 1683 0.321564 TGTGGGCCAATCTCTTGACG 60.322 55.000 8.40 0.00 34.04 4.35 F
1744 1783 1.540267 CTCCACGATGGGTATACCTCG 59.460 57.143 24.46 24.46 42.11 4.63 F
3417 3460 0.396060 GGCCCATTGCAAAGAAACCA 59.604 50.000 1.71 0.00 43.89 3.67 F
3757 3811 0.403271 AGCATGGTCAGAAACTGCCT 59.597 50.000 0.00 0.00 33.34 4.75 F
3758 3812 0.524862 GCATGGTCAGAAACTGCCTG 59.475 55.000 0.00 0.00 32.01 4.85 F
5197 5388 0.536460 TCGACCCAGTTGGAAAAGCC 60.536 55.000 0.00 0.00 37.39 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1610 1649 1.339929 CCCACACCAACAAAAGGTAGC 59.660 52.381 0.00 0.00 37.23 3.58 R
2471 2510 2.224281 GGCATTAAAGCATTTAGGGGGC 60.224 50.000 4.90 0.00 42.24 5.80 R
3063 3106 2.413112 CGTGTCTGATGTTAGTGCCTTG 59.587 50.000 0.00 0.00 0.00 3.61 R
3696 3739 2.679059 GCAGAGCAACATAGCAGGAGAA 60.679 50.000 0.00 0.00 36.85 2.87 R
5032 5223 0.103937 CAGGCTTCAGAGGATCCGAC 59.896 60.000 5.98 4.95 33.66 4.79 R
5182 5373 0.250727 TCTCGGCTTTTCCAACTGGG 60.251 55.000 0.00 0.00 35.41 4.45 R
5223 5414 0.773644 TGCAGAGAAGGGAAAAGGCT 59.226 50.000 0.00 0.00 0.00 4.58 R
6470 6818 0.103208 CCGAATCGACCTAGCTGCTT 59.897 55.000 7.79 0.00 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.145551 GCCCCCGCGTCTTCTAGA 61.146 66.667 4.92 0.00 0.00 2.43
40 41 1.102222 CGTCTTCTAGACCCTCCCCG 61.102 65.000 0.00 0.00 42.12 5.73
63 74 2.767073 CCCCTCCCGTCCCCTAAC 60.767 72.222 0.00 0.00 0.00 2.34
533 553 0.038526 CTCTGGTACGCGGTTCTGTT 60.039 55.000 12.47 0.00 0.00 3.16
665 692 3.326747 TCGTTTGGTTTGGTTTGGTTTG 58.673 40.909 0.00 0.00 0.00 2.93
667 694 3.413327 GTTTGGTTTGGTTTGGTTTGGT 58.587 40.909 0.00 0.00 0.00 3.67
668 695 3.790089 TTGGTTTGGTTTGGTTTGGTT 57.210 38.095 0.00 0.00 0.00 3.67
669 696 3.336138 TGGTTTGGTTTGGTTTGGTTC 57.664 42.857 0.00 0.00 0.00 3.62
670 697 2.027100 TGGTTTGGTTTGGTTTGGTTCC 60.027 45.455 0.00 0.00 0.00 3.62
671 698 2.272678 GTTTGGTTTGGTTTGGTTCCG 58.727 47.619 0.00 0.00 0.00 4.30
672 699 0.824759 TTGGTTTGGTTTGGTTCCGG 59.175 50.000 0.00 0.00 0.00 5.14
673 700 0.324460 TGGTTTGGTTTGGTTCCGGT 60.324 50.000 0.00 0.00 0.00 5.28
732 759 7.687005 AAAAATTCGTCGAGCAAAAACAATA 57.313 28.000 0.00 0.00 0.00 1.90
734 761 7.492614 AAATTCGTCGAGCAAAAACAATATC 57.507 32.000 0.00 0.00 0.00 1.63
760 787 4.617645 GCAATTTAACACGCCGTTATTTGA 59.382 37.500 17.01 0.00 39.81 2.69
786 814 4.684134 TGGGGGAAAGCAGCAGCC 62.684 66.667 0.00 0.00 43.56 4.85
790 818 3.066814 GGAAAGCAGCAGCCCTGG 61.067 66.667 0.00 0.00 43.56 4.45
791 819 3.066814 GAAAGCAGCAGCCCTGGG 61.067 66.667 8.86 8.86 43.56 4.45
812 840 2.223665 GCATTGCTAGCCACCTTGATTC 60.224 50.000 13.29 0.00 0.00 2.52
819 847 1.207329 AGCCACCTTGATTCTACCGTC 59.793 52.381 0.00 0.00 0.00 4.79
826 854 4.466370 ACCTTGATTCTACCGTCTTCATGA 59.534 41.667 0.00 0.00 0.00 3.07
828 856 5.694006 CCTTGATTCTACCGTCTTCATGATC 59.306 44.000 0.00 0.00 0.00 2.92
860 892 4.060900 CGTAGGCTGTATTTCTGATGCAT 58.939 43.478 0.00 0.00 0.00 3.96
877 909 1.526917 ATATTGCTGCCGCCACTCC 60.527 57.895 0.00 0.00 34.43 3.85
886 918 0.249741 GCCGCCACTCCGTTACATAT 60.250 55.000 0.00 0.00 0.00 1.78
902 934 9.557338 CCGTTACATATATAGAAGAACAGTAGC 57.443 37.037 0.00 0.00 0.00 3.58
911 943 1.638529 AGAACAGTAGCTGCACTCCT 58.361 50.000 4.12 0.00 34.37 3.69
922 954 4.923415 AGCTGCACTCCTTTAATAGGTTT 58.077 39.130 1.02 0.00 45.03 3.27
923 955 4.944317 AGCTGCACTCCTTTAATAGGTTTC 59.056 41.667 1.02 0.00 45.03 2.78
926 958 5.741011 TGCACTCCTTTAATAGGTTTCGAT 58.259 37.500 0.00 0.00 45.03 3.59
934 966 6.816640 CCTTTAATAGGTTTCGATGAGTGACA 59.183 38.462 0.00 0.00 39.39 3.58
942 974 2.361789 TCGATGAGTGACATGGACGTA 58.638 47.619 0.00 0.00 38.46 3.57
943 975 2.750712 TCGATGAGTGACATGGACGTAA 59.249 45.455 0.00 0.00 38.46 3.18
966 998 1.829849 TCTTGATGCTCTGCTACTGCT 59.170 47.619 0.00 0.00 40.48 4.24
972 1004 3.657015 TGCTCTGCTACTGCTATGATC 57.343 47.619 0.00 0.00 40.48 2.92
999 1031 2.886523 CTGACCAATTCTGCAACAGGAA 59.113 45.455 0.00 0.00 31.51 3.36
1007 1039 0.169672 CTGCAACAGGAAATGGAGCG 59.830 55.000 0.00 0.00 36.07 5.03
1065 1097 4.537433 GCCGATGGCGCTTCTCCT 62.537 66.667 7.64 0.00 39.62 3.69
1104 1136 1.226717 GCGCAAGGAGAGGACTACG 60.227 63.158 0.30 0.00 38.28 3.51
1137 1169 2.124736 AATGTCCGGGGCATGTCG 60.125 61.111 16.10 0.00 0.00 4.35
1176 1208 1.065928 GATAGAGACGGTGGTGGCG 59.934 63.158 0.00 0.00 0.00 5.69
1188 1220 2.674754 GTGGCGGGATTGAAGGGA 59.325 61.111 0.00 0.00 0.00 4.20
1245 1277 1.523758 CTGTTGTTCAGTACAGCCCC 58.476 55.000 0.00 0.00 37.18 5.80
1280 1315 6.305272 TGTAAGATTTCCTTCTGATGCTCT 57.695 37.500 0.00 0.00 36.34 4.09
1282 1317 6.596888 TGTAAGATTTCCTTCTGATGCTCTTG 59.403 38.462 0.00 0.00 36.34 3.02
1291 1326 3.778618 TCTGATGCTCTTGTTCTCATCG 58.221 45.455 0.00 0.00 38.43 3.84
1294 1329 3.131046 TGATGCTCTTGTTCTCATCGCTA 59.869 43.478 0.00 0.00 38.43 4.26
1296 1331 4.128925 TGCTCTTGTTCTCATCGCTATT 57.871 40.909 0.00 0.00 0.00 1.73
1322 1358 8.885494 TTTTTCATTTTTCAATGTGGAGGTAG 57.115 30.769 0.00 0.00 40.78 3.18
1326 1362 8.106247 TCATTTTTCAATGTGGAGGTAGTTAC 57.894 34.615 0.00 0.00 40.78 2.50
1383 1419 1.340600 TGGGGTAAAAAGAGGGATGCG 60.341 52.381 0.00 0.00 0.00 4.73
1386 1422 2.683362 GGGTAAAAAGAGGGATGCGAAG 59.317 50.000 0.00 0.00 0.00 3.79
1392 1428 5.353394 AAAAGAGGGATGCGAAGTACATA 57.647 39.130 0.00 0.00 0.00 2.29
1403 1441 5.340803 TGCGAAGTACATAGTAGCTTCTTG 58.659 41.667 0.00 0.07 36.23 3.02
1435 1474 9.743057 TGTTGTTAATCCAAGTTATCAGTTTTG 57.257 29.630 0.00 0.00 0.00 2.44
1436 1475 8.699749 GTTGTTAATCCAAGTTATCAGTTTTGC 58.300 33.333 0.00 0.00 0.00 3.68
1437 1476 8.177119 TGTTAATCCAAGTTATCAGTTTTGCT 57.823 30.769 0.00 0.00 0.00 3.91
1438 1477 9.290988 TGTTAATCCAAGTTATCAGTTTTGCTA 57.709 29.630 0.00 0.00 0.00 3.49
1439 1478 9.556030 GTTAATCCAAGTTATCAGTTTTGCTAC 57.444 33.333 0.00 0.00 0.00 3.58
1440 1479 7.759489 AATCCAAGTTATCAGTTTTGCTACA 57.241 32.000 0.00 0.00 0.00 2.74
1441 1480 7.944729 ATCCAAGTTATCAGTTTTGCTACAT 57.055 32.000 0.00 0.00 0.00 2.29
1442 1481 7.144722 TCCAAGTTATCAGTTTTGCTACATG 57.855 36.000 0.00 0.00 0.00 3.21
1443 1482 6.939730 TCCAAGTTATCAGTTTTGCTACATGA 59.060 34.615 0.00 0.00 0.00 3.07
1451 1490 4.396166 CAGTTTTGCTACATGAACTAGGGG 59.604 45.833 0.00 0.00 31.58 4.79
1492 1531 4.957759 AGTGTATACGGGAAATGTTTGC 57.042 40.909 0.00 0.00 0.00 3.68
1522 1561 8.526147 CAGGAGATGAATTTTGTCCTACAAATT 58.474 33.333 6.09 0.86 46.17 1.82
1525 1564 9.565213 GAGATGAATTTTGTCCTACAAATTCTG 57.435 33.333 15.02 0.00 46.17 3.02
1546 1585 2.185004 TTTAGCTGCCAGGTCAACTC 57.815 50.000 0.00 0.00 0.00 3.01
1552 1591 2.482839 GCTGCCAGGTCAACTCTATCTC 60.483 54.545 0.00 0.00 0.00 2.75
1590 1629 2.712087 TCAGTTTTAAGGCCCACACCTA 59.288 45.455 0.00 0.00 39.93 3.08
1596 1635 1.966845 AAGGCCCACACCTATGTACT 58.033 50.000 0.00 0.00 39.93 2.73
1644 1683 0.321564 TGTGGGCCAATCTCTTGACG 60.322 55.000 8.40 0.00 34.04 4.35
1685 1724 5.702670 TGGACAGTCAAGAAATTGTCAGATC 59.297 40.000 2.17 0.00 41.22 2.75
1692 1731 6.738649 GTCAAGAAATTGTCAGATCGTTTAGC 59.261 38.462 0.00 0.00 0.00 3.09
1694 1733 7.173218 TCAAGAAATTGTCAGATCGTTTAGCTT 59.827 33.333 0.00 0.00 0.00 3.74
1734 1773 5.420421 AGGAACTATATCATCTCCACGATGG 59.580 44.000 0.00 0.00 43.64 3.51
1744 1783 1.540267 CTCCACGATGGGTATACCTCG 59.460 57.143 24.46 24.46 42.11 4.63
1748 1787 3.006537 CCACGATGGGTATACCTCGATTT 59.993 47.826 29.92 12.77 40.22 2.17
1749 1788 4.219070 CCACGATGGGTATACCTCGATTTA 59.781 45.833 29.92 8.64 40.22 1.40
1796 1835 7.546358 CATAAATGAACTGCCAAGGAACAATA 58.454 34.615 0.00 0.00 0.00 1.90
1798 1837 5.587388 ATGAACTGCCAAGGAACAATATG 57.413 39.130 0.00 0.00 0.00 1.78
1799 1838 4.661222 TGAACTGCCAAGGAACAATATGA 58.339 39.130 0.00 0.00 0.00 2.15
1812 1851 9.807921 AAGGAACAATATGACCTTTCTTTCTTA 57.192 29.630 0.00 0.00 35.56 2.10
1822 1861 9.965902 ATGACCTTTCTTTCTTAATACAGTGAT 57.034 29.630 0.00 0.00 0.00 3.06
1917 1956 4.771590 TTGATGCATTCTCCACAAAGTC 57.228 40.909 0.00 0.00 0.00 3.01
1921 1960 3.753815 TGCATTCTCCACAAAGTCATGA 58.246 40.909 0.00 0.00 0.00 3.07
1930 1969 4.578516 TCCACAAAGTCATGACGAAAATGT 59.421 37.500 19.85 16.80 36.20 2.71
1937 1976 2.884012 TCATGACGAAAATGTTGCACCT 59.116 40.909 0.00 0.00 0.00 4.00
1939 1978 4.517075 TCATGACGAAAATGTTGCACCTTA 59.483 37.500 0.00 0.00 0.00 2.69
2087 2126 2.230660 CTCCGGATAAAAGGAATGGCC 58.769 52.381 3.57 0.00 35.90 5.36
2339 2378 4.580167 CCAGAAGACACCAAACTCATTCAA 59.420 41.667 0.00 0.00 0.00 2.69
2384 2423 5.067805 GGGAGTGAATAATGTTGAATGGGAC 59.932 44.000 0.00 0.00 0.00 4.46
3276 3319 4.332268 GTCATTTCAGAAGTGGAGATCAGC 59.668 45.833 5.86 0.00 0.00 4.26
3417 3460 0.396060 GGCCCATTGCAAAGAAACCA 59.604 50.000 1.71 0.00 43.89 3.67
3423 3466 3.305608 CCATTGCAAAGAAACCAGGAGAC 60.306 47.826 1.71 0.00 0.00 3.36
3445 3488 6.782494 AGACAAGGTTGGTATTTTTGGATTCT 59.218 34.615 0.00 0.00 0.00 2.40
3460 3503 4.722220 TGGATTCTGATTGCCTTATCTGG 58.278 43.478 0.00 0.00 0.00 3.86
3462 3505 5.136105 GGATTCTGATTGCCTTATCTGGTT 58.864 41.667 0.00 0.00 0.00 3.67
3496 3539 3.370840 ACTGCCCTGATGCTTCAATTA 57.629 42.857 3.65 0.00 0.00 1.40
3499 3542 3.225104 TGCCCTGATGCTTCAATTATCC 58.775 45.455 3.65 0.00 0.00 2.59
3535 3578 6.973229 ATTGGTGGTACTGTAAACGATAAC 57.027 37.500 0.00 0.00 0.00 1.89
3691 3734 6.296026 TGTTCCAGCTGTAAGTTATCTGTTT 58.704 36.000 13.81 0.00 35.30 2.83
3721 3775 1.260825 CTGCTATGTTGCTCTGCATCG 59.739 52.381 0.00 0.00 38.76 3.84
3752 3806 5.505324 GCATAATCAGAGCATGGTCAGAAAC 60.505 44.000 25.71 9.41 0.00 2.78
3754 3808 3.049708 TCAGAGCATGGTCAGAAACTG 57.950 47.619 25.71 14.26 0.00 3.16
3755 3809 1.467734 CAGAGCATGGTCAGAAACTGC 59.532 52.381 25.71 0.00 0.00 4.40
3756 3810 0.807496 GAGCATGGTCAGAAACTGCC 59.193 55.000 19.79 0.00 33.34 4.85
3757 3811 0.403271 AGCATGGTCAGAAACTGCCT 59.597 50.000 0.00 0.00 33.34 4.75
3758 3812 0.524862 GCATGGTCAGAAACTGCCTG 59.475 55.000 0.00 0.00 32.01 4.85
3764 3818 1.002544 GTCAGAAACTGCCTGCCTACT 59.997 52.381 0.00 0.00 0.00 2.57
3766 3820 1.002430 CAGAAACTGCCTGCCTACTCA 59.998 52.381 0.00 0.00 0.00 3.41
3820 3874 7.938563 TTGTTGGTATCAAAGTTATGCAAAC 57.061 32.000 0.00 0.00 34.28 2.93
3823 3877 6.320494 TGGTATCAAAGTTATGCAAACGTT 57.680 33.333 0.00 0.00 0.00 3.99
3833 3887 6.781138 AGTTATGCAAACGTTATGTACATGG 58.219 36.000 18.81 9.81 0.00 3.66
3834 3888 6.373216 AGTTATGCAAACGTTATGTACATGGT 59.627 34.615 18.81 10.43 0.00 3.55
3837 3891 4.153296 TGCAAACGTTATGTACATGGTCAG 59.847 41.667 18.81 7.67 0.00 3.51
3902 3981 2.551459 CCGGGTTCTACTGTATACTCCG 59.449 54.545 4.17 15.22 35.33 4.63
3905 3984 4.718961 GGGTTCTACTGTATACTCCGGTA 58.281 47.826 0.00 2.31 0.00 4.02
3972 4053 9.833917 AACTAGCTAGTTTAACTCTGTTCTTTT 57.166 29.630 29.48 5.24 43.57 2.27
3974 4055 7.731882 AGCTAGTTTAACTCTGTTCTTTTCC 57.268 36.000 0.00 0.00 0.00 3.13
3976 4057 6.202379 GCTAGTTTAACTCTGTTCTTTTCCGT 59.798 38.462 0.00 0.00 0.00 4.69
3979 4060 1.594331 ACTCTGTTCTTTTCCGTGCC 58.406 50.000 0.00 0.00 0.00 5.01
4003 4084 6.293735 CCGATTAGTTTTCCAGCAGTAAACAA 60.294 38.462 10.23 4.97 34.93 2.83
4042 4123 3.452755 TCATACCCTGCTTGATACGTG 57.547 47.619 0.00 0.00 0.00 4.49
4051 4132 4.229096 CTGCTTGATACGTGCAAATGTTT 58.771 39.130 0.00 0.00 36.22 2.83
4052 4133 4.225984 TGCTTGATACGTGCAAATGTTTC 58.774 39.130 0.00 0.00 33.48 2.78
4058 4139 7.139896 TGATACGTGCAAATGTTTCAGTATT 57.860 32.000 0.00 0.00 0.00 1.89
4061 4142 9.370126 GATACGTGCAAATGTTTCAGTATTATC 57.630 33.333 0.00 0.00 0.00 1.75
4064 4145 7.750458 ACGTGCAAATGTTTCAGTATTATCTTG 59.250 33.333 0.00 0.00 0.00 3.02
4065 4146 7.253420 CGTGCAAATGTTTCAGTATTATCTTGC 60.253 37.037 0.00 0.00 0.00 4.01
4066 4147 7.756722 GTGCAAATGTTTCAGTATTATCTTGCT 59.243 33.333 0.00 0.00 0.00 3.91
4067 4148 7.756272 TGCAAATGTTTCAGTATTATCTTGCTG 59.244 33.333 0.00 0.00 0.00 4.41
4068 4149 7.756722 GCAAATGTTTCAGTATTATCTTGCTGT 59.243 33.333 0.00 0.00 0.00 4.40
4070 4151 8.565896 AATGTTTCAGTATTATCTTGCTGTCA 57.434 30.769 0.00 0.00 0.00 3.58
4071 4152 7.601073 TGTTTCAGTATTATCTTGCTGTCAG 57.399 36.000 0.00 0.00 0.00 3.51
4073 4154 5.939764 TCAGTATTATCTTGCTGTCAGGT 57.060 39.130 1.14 0.00 0.00 4.00
4116 4198 7.884877 ACCTGTCTCATATTGATTGTTTCTTCA 59.115 33.333 0.00 0.00 0.00 3.02
4118 4200 7.742151 TGTCTCATATTGATTGTTTCTTCACG 58.258 34.615 0.00 0.00 0.00 4.35
4197 4279 1.480137 CTTCACCTCTACCCTCAGCAG 59.520 57.143 0.00 0.00 0.00 4.24
4359 4441 4.546570 GTGTTCTTATCAAAGGTGGCAAC 58.453 43.478 0.00 0.00 33.22 4.17
4409 4491 6.288294 TCTTGAGACTTTTTGTGCTAGCTTA 58.712 36.000 17.23 1.46 0.00 3.09
4495 4595 9.656323 TCTCCATATAAGTTCTACTGTGGTATT 57.344 33.333 0.00 0.00 0.00 1.89
4512 4612 4.591498 TGGTATTCTAACACACACTGGACT 59.409 41.667 0.00 0.00 0.00 3.85
4855 5046 4.864334 GAGGTGCATCCAGGGGCG 62.864 72.222 0.00 0.00 39.02 6.13
4930 5121 2.995466 TGCAAGAATTTGAAGCTCCG 57.005 45.000 0.00 0.00 36.36 4.63
4978 5169 2.611292 GTCTGAAATGGAGGATCTTGCG 59.389 50.000 0.00 0.00 33.73 4.85
4999 5190 1.103398 GGACCTGTGTGCTTGTTGCT 61.103 55.000 0.00 0.00 43.37 3.91
5110 5301 2.865119 TCACAAGCATCATGGTGACT 57.135 45.000 11.02 3.46 35.51 3.41
5182 5373 2.535984 CACCGTATTTGCTGAGATCGAC 59.464 50.000 0.00 0.00 0.00 4.20
5197 5388 0.536460 TCGACCCAGTTGGAAAAGCC 60.536 55.000 0.00 0.00 37.39 4.35
5203 5394 1.953686 CCAGTTGGAAAAGCCGAGAAA 59.046 47.619 0.00 0.00 40.66 2.52
5223 5414 3.788227 AATCAAGGACTTGCAGGTACA 57.212 42.857 14.43 0.00 40.24 2.90
5224 5415 2.839486 TCAAGGACTTGCAGGTACAG 57.161 50.000 14.43 5.65 40.24 2.74
5239 5433 2.306219 GGTACAGCCTTTTCCCTTCTCT 59.694 50.000 0.00 0.00 0.00 3.10
5267 5461 7.806180 AGGGATATATACCTGGCATTACATTC 58.194 38.462 16.34 0.00 40.50 2.67
5564 5758 4.021925 GCTGGCGTCCTGTTCCCT 62.022 66.667 0.00 0.00 0.00 4.20
5588 5782 3.942439 GGCATCCGGCTACCTCCC 61.942 72.222 0.00 0.00 44.01 4.30
5684 5878 3.103911 CCGTTGCACGTCGAGGAC 61.104 66.667 12.85 4.11 40.58 3.85
5693 5887 3.104766 GTCGAGGACGTGCCGATA 58.895 61.111 19.58 0.80 43.43 2.92
5694 5888 1.298190 GTCGAGGACGTGCCGATAC 60.298 63.158 19.58 8.38 43.43 2.24
5696 5890 2.767445 CGAGGACGTGCCGATACCA 61.767 63.158 2.38 0.00 43.43 3.25
5797 6036 1.666553 TCAACGTTAGTGGGCTGCG 60.667 57.895 0.00 0.00 0.00 5.18
5802 6041 1.078708 GTTAGTGGGCTGCGGCTAA 60.079 57.895 18.85 5.10 38.73 3.09
5816 6055 0.391597 GGCTAATTGCTGGCATGCAT 59.608 50.000 21.36 0.00 42.96 3.96
5817 6056 1.604693 GGCTAATTGCTGGCATGCATC 60.605 52.381 21.36 8.06 42.96 3.91
5818 6057 1.067974 GCTAATTGCTGGCATGCATCA 59.932 47.619 21.36 10.75 42.96 3.07
5819 6058 2.482316 GCTAATTGCTGGCATGCATCAA 60.482 45.455 21.36 18.67 42.96 2.57
5820 6059 2.309528 AATTGCTGGCATGCATCAAG 57.690 45.000 21.36 11.88 42.96 3.02
5835 6074 1.205064 CAAGCCTTGAACTGACGCG 59.795 57.895 3.53 3.53 0.00 6.01
5894 6143 4.156739 TGCATATGTAATTTCACGCAACCA 59.843 37.500 4.29 0.00 0.00 3.67
5901 6150 4.335400 AATTTCACGCAACCATTTTCCT 57.665 36.364 0.00 0.00 0.00 3.36
5902 6151 3.810310 TTTCACGCAACCATTTTCCTT 57.190 38.095 0.00 0.00 0.00 3.36
5903 6152 3.363341 TTCACGCAACCATTTTCCTTC 57.637 42.857 0.00 0.00 0.00 3.46
5904 6153 1.611491 TCACGCAACCATTTTCCTTCC 59.389 47.619 0.00 0.00 0.00 3.46
5905 6154 1.613437 CACGCAACCATTTTCCTTCCT 59.387 47.619 0.00 0.00 0.00 3.36
5923 6172 5.336372 CCTTCCTTTTTGTGCGGAATGATTA 60.336 40.000 0.00 0.00 36.33 1.75
5928 6177 7.117523 TCCTTTTTGTGCGGAATGATTATTTTG 59.882 33.333 0.00 0.00 0.00 2.44
5989 6240 7.891498 ATTCATCAGATTGTTCCATCATTGA 57.109 32.000 0.00 0.00 0.00 2.57
5991 6242 5.591472 TCATCAGATTGTTCCATCATTGACC 59.409 40.000 0.00 0.00 0.00 4.02
5995 6246 3.913548 TTGTTCCATCATTGACCAACG 57.086 42.857 0.00 0.00 0.00 4.10
5996 6247 1.539388 TGTTCCATCATTGACCAACGC 59.461 47.619 0.00 0.00 0.00 4.84
5997 6248 1.812571 GTTCCATCATTGACCAACGCT 59.187 47.619 0.00 0.00 0.00 5.07
6010 6261 1.264288 CCAACGCTGACTCTCAAAACC 59.736 52.381 0.00 0.00 0.00 3.27
6013 6264 1.000955 ACGCTGACTCTCAAAACCGAT 59.999 47.619 0.00 0.00 0.00 4.18
6015 6266 2.599082 CGCTGACTCTCAAAACCGATAC 59.401 50.000 0.00 0.00 0.00 2.24
6025 6276 7.117812 ACTCTCAAAACCGATACTGTATTTGTG 59.882 37.037 1.22 4.62 0.00 3.33
6035 6286 1.800586 CTGTATTTGTGCGCAGACTGT 59.199 47.619 12.22 0.00 0.00 3.55
6051 6325 0.110056 CTGTTTGCGGACACTGATGC 60.110 55.000 0.00 0.00 0.00 3.91
6052 6326 1.154413 GTTTGCGGACACTGATGCG 60.154 57.895 0.00 0.00 0.00 4.73
6053 6327 1.596752 TTTGCGGACACTGATGCGT 60.597 52.632 0.00 0.00 0.00 5.24
6055 6329 2.432456 GCGGACACTGATGCGTGA 60.432 61.111 0.00 0.00 38.27 4.35
6056 6330 2.447887 GCGGACACTGATGCGTGAG 61.448 63.158 0.00 0.00 38.27 3.51
6057 6331 1.080501 CGGACACTGATGCGTGAGT 60.081 57.895 0.00 0.00 38.27 3.41
6058 6332 1.073216 CGGACACTGATGCGTGAGTC 61.073 60.000 0.00 0.00 38.27 3.36
6059 6333 1.073216 GGACACTGATGCGTGAGTCG 61.073 60.000 0.00 0.00 43.12 4.18
6060 6334 0.109735 GACACTGATGCGTGAGTCGA 60.110 55.000 0.00 0.00 42.86 4.20
6061 6335 0.387367 ACACTGATGCGTGAGTCGAC 60.387 55.000 7.70 7.70 42.86 4.20
6062 6336 1.073216 CACTGATGCGTGAGTCGACC 61.073 60.000 13.01 4.42 42.86 4.79
6063 6337 1.212751 CTGATGCGTGAGTCGACCA 59.787 57.895 13.01 7.31 42.86 4.02
6064 6338 0.179127 CTGATGCGTGAGTCGACCAT 60.179 55.000 13.01 7.98 42.86 3.55
6065 6339 0.246360 TGATGCGTGAGTCGACCATT 59.754 50.000 13.01 0.00 42.86 3.16
6068 6342 2.442212 TGCGTGAGTCGACCATTTAA 57.558 45.000 13.01 0.00 42.86 1.52
6069 6343 2.967362 TGCGTGAGTCGACCATTTAAT 58.033 42.857 13.01 0.00 42.86 1.40
6075 6349 6.584942 GCGTGAGTCGACCATTTAATCATATA 59.415 38.462 13.01 0.00 42.86 0.86
6076 6350 7.410513 GCGTGAGTCGACCATTTAATCATATAC 60.411 40.741 13.01 0.00 42.86 1.47
6077 6351 7.061905 CGTGAGTCGACCATTTAATCATATACC 59.938 40.741 13.01 0.00 42.86 2.73
6078 6352 7.331193 GTGAGTCGACCATTTAATCATATACCC 59.669 40.741 13.01 0.00 0.00 3.69
6079 6353 6.395629 AGTCGACCATTTAATCATATACCCG 58.604 40.000 13.01 0.00 0.00 5.28
6080 6354 6.014840 AGTCGACCATTTAATCATATACCCGT 60.015 38.462 13.01 0.00 0.00 5.28
6081 6355 7.177216 AGTCGACCATTTAATCATATACCCGTA 59.823 37.037 13.01 0.00 0.00 4.02
6082 6356 7.977853 GTCGACCATTTAATCATATACCCGTAT 59.022 37.037 3.51 0.00 0.00 3.06
6083 6357 7.977293 TCGACCATTTAATCATATACCCGTATG 59.023 37.037 0.00 0.00 34.16 2.39
6130 6405 9.199645 ACAAATTGGATGATATTCATGTAACCA 57.800 29.630 0.00 0.00 37.20 3.67
6139 6414 8.731275 TGATATTCATGTAACCAGACGATTTT 57.269 30.769 0.00 0.00 0.00 1.82
6149 6424 8.842280 TGTAACCAGACGATTTTCATTTAAACT 58.158 29.630 0.00 0.00 0.00 2.66
6153 6428 8.718734 ACCAGACGATTTTCATTTAAACTAGAC 58.281 33.333 0.00 0.00 0.00 2.59
6155 6430 9.746711 CAGACGATTTTCATTTAAACTAGACTG 57.253 33.333 0.00 0.00 0.00 3.51
6243 6518 5.731599 TTTAACTAAACAAAAGCGTCCGA 57.268 34.783 0.00 0.00 0.00 4.55
6245 6520 3.872560 ACTAAACAAAAGCGTCCGAAG 57.127 42.857 0.00 0.00 0.00 3.79
6272 6547 2.693267 AGTCTAAATCTTCACCGGCC 57.307 50.000 0.00 0.00 0.00 6.13
6273 6548 1.906574 AGTCTAAATCTTCACCGGCCA 59.093 47.619 0.00 0.00 0.00 5.36
6274 6549 2.505819 AGTCTAAATCTTCACCGGCCAT 59.494 45.455 0.00 0.00 0.00 4.40
6275 6550 2.614057 GTCTAAATCTTCACCGGCCATG 59.386 50.000 0.00 0.00 0.00 3.66
6277 6552 1.755179 AAATCTTCACCGGCCATGAG 58.245 50.000 0.00 0.68 0.00 2.90
6278 6553 0.749454 AATCTTCACCGGCCATGAGC 60.749 55.000 0.00 0.00 42.60 4.26
6280 6555 1.675310 CTTCACCGGCCATGAGCAA 60.675 57.895 0.00 0.00 46.50 3.91
6281 6556 1.651240 CTTCACCGGCCATGAGCAAG 61.651 60.000 0.00 0.00 46.50 4.01
6283 6558 4.349503 ACCGGCCATGAGCAAGCA 62.350 61.111 0.00 0.00 46.50 3.91
6285 6560 2.719979 CGGCCATGAGCAAGCATC 59.280 61.111 2.24 0.00 46.50 3.91
6286 6561 2.842256 CGGCCATGAGCAAGCATCC 61.842 63.158 2.24 0.00 46.50 3.51
6287 6562 2.719979 GCCATGAGCAAGCATCCG 59.280 61.111 0.00 0.00 42.97 4.18
6288 6563 2.117156 GCCATGAGCAAGCATCCGT 61.117 57.895 0.00 0.00 42.97 4.69
6289 6564 2.020131 CCATGAGCAAGCATCCGTC 58.980 57.895 0.00 0.00 0.00 4.79
6291 6566 1.522355 ATGAGCAAGCATCCGTCGG 60.522 57.895 4.39 4.39 0.00 4.79
6305 6586 1.601419 CGTCGGCCTCCAAGTCCTTA 61.601 60.000 0.00 0.00 0.00 2.69
6322 6637 4.217767 GTCCTTATTGTTCCCCTTTGTGTC 59.782 45.833 0.00 0.00 0.00 3.67
6324 6639 2.009681 ATTGTTCCCCTTTGTGTCCC 57.990 50.000 0.00 0.00 0.00 4.46
6325 6640 0.930726 TTGTTCCCCTTTGTGTCCCT 59.069 50.000 0.00 0.00 0.00 4.20
6329 6644 0.401395 TCCCCTTTGTGTCCCTGTCT 60.401 55.000 0.00 0.00 0.00 3.41
6334 6649 0.105964 TTTGTGTCCCTGTCTGACGG 59.894 55.000 9.70 9.70 35.46 4.79
6336 6651 3.311110 TGTCCCTGTCTGACGGCC 61.311 66.667 11.18 0.00 35.46 6.13
6362 6677 1.302033 ACGGGAAGTGAAGCTGCTG 60.302 57.895 1.35 0.00 0.00 4.41
6363 6678 1.302033 CGGGAAGTGAAGCTGCTGT 60.302 57.895 1.35 0.00 0.00 4.40
6364 6679 1.294659 CGGGAAGTGAAGCTGCTGTC 61.295 60.000 1.35 3.94 0.00 3.51
6365 6680 0.250467 GGGAAGTGAAGCTGCTGTCA 60.250 55.000 1.35 6.68 0.00 3.58
6366 6681 0.871057 GGAAGTGAAGCTGCTGTCAC 59.129 55.000 24.57 24.57 43.70 3.67
6369 6684 2.242113 GTGAAGCTGCTGTCACTGG 58.758 57.895 24.62 0.00 40.82 4.00
6370 6685 1.598962 TGAAGCTGCTGTCACTGGC 60.599 57.895 1.35 0.00 0.00 4.85
6371 6686 1.598962 GAAGCTGCTGTCACTGGCA 60.599 57.895 1.35 0.00 36.94 4.92
6372 6687 1.152902 AAGCTGCTGTCACTGGCAA 60.153 52.632 1.35 0.00 38.02 4.52
6373 6688 1.170919 AAGCTGCTGTCACTGGCAAG 61.171 55.000 1.35 0.00 38.02 4.01
6374 6689 1.598962 GCTGCTGTCACTGGCAAGA 60.599 57.895 0.00 0.00 38.02 3.02
6375 6690 1.168407 GCTGCTGTCACTGGCAAGAA 61.168 55.000 0.00 0.00 38.02 2.52
6376 6691 1.311859 CTGCTGTCACTGGCAAGAAA 58.688 50.000 0.00 0.00 38.02 2.52
6377 6692 1.266175 CTGCTGTCACTGGCAAGAAAG 59.734 52.381 0.00 3.11 38.02 2.62
6378 6693 1.134128 TGCTGTCACTGGCAAGAAAGA 60.134 47.619 10.16 0.00 35.40 2.52
6379 6694 1.534595 GCTGTCACTGGCAAGAAAGAG 59.465 52.381 10.16 0.00 0.00 2.85
6380 6695 2.843701 CTGTCACTGGCAAGAAAGAGT 58.156 47.619 0.00 0.00 0.00 3.24
6381 6696 3.803715 GCTGTCACTGGCAAGAAAGAGTA 60.804 47.826 10.16 0.00 0.00 2.59
6382 6697 4.380531 CTGTCACTGGCAAGAAAGAGTAA 58.619 43.478 0.00 0.00 0.00 2.24
6383 6698 4.776349 TGTCACTGGCAAGAAAGAGTAAA 58.224 39.130 0.00 0.00 0.00 2.01
6420 6746 0.179073 CATGCCCTACTCCTTGTCGG 60.179 60.000 0.00 0.00 0.00 4.79
6433 6781 0.469331 TTGTCGGAGTGGAGGTGAGT 60.469 55.000 0.00 0.00 0.00 3.41
6437 6785 0.679505 CGGAGTGGAGGTGAGTTTGA 59.320 55.000 0.00 0.00 0.00 2.69
6451 6799 3.745975 TGAGTTTGACGATGAATGTGGAC 59.254 43.478 0.00 0.00 0.00 4.02
6453 6801 2.734276 TTGACGATGAATGTGGACGA 57.266 45.000 0.00 0.00 0.00 4.20
6457 6805 1.482621 CGATGAATGTGGACGAGCCG 61.483 60.000 0.00 0.00 40.66 5.52
6460 6808 3.665675 GAATGTGGACGAGCCGGCT 62.666 63.158 33.48 33.48 40.66 5.52
6478 6826 3.676216 TCGTGGTCGAAGCAGCTA 58.324 55.556 0.00 0.00 43.34 3.32
6479 6827 1.506718 TCGTGGTCGAAGCAGCTAG 59.493 57.895 0.00 0.00 43.34 3.42
6480 6828 1.517257 CGTGGTCGAAGCAGCTAGG 60.517 63.158 0.00 0.00 39.71 3.02
6481 6829 1.592223 GTGGTCGAAGCAGCTAGGT 59.408 57.895 0.00 0.00 0.00 3.08
6482 6830 0.458716 GTGGTCGAAGCAGCTAGGTC 60.459 60.000 0.00 0.00 0.00 3.85
6483 6831 1.226717 GGTCGAAGCAGCTAGGTCG 60.227 63.158 8.45 8.45 0.00 4.79
6485 6833 0.382515 GTCGAAGCAGCTAGGTCGAT 59.617 55.000 18.28 0.00 32.81 3.59
6486 6834 1.103803 TCGAAGCAGCTAGGTCGATT 58.896 50.000 12.67 0.00 0.00 3.34
6487 6835 1.065701 TCGAAGCAGCTAGGTCGATTC 59.934 52.381 12.67 10.39 0.00 2.52
6488 6836 1.482278 GAAGCAGCTAGGTCGATTCG 58.518 55.000 0.00 0.00 0.00 3.34
6490 6838 1.951631 GCAGCTAGGTCGATTCGGC 60.952 63.158 6.18 3.75 0.00 5.54
6492 6840 3.030882 GCTAGGTCGATTCGGCGC 61.031 66.667 0.00 0.00 29.52 6.53
6494 6842 3.133767 CTAGGTCGATTCGGCGCCA 62.134 63.158 28.98 8.41 29.52 5.69
6495 6843 2.622903 CTAGGTCGATTCGGCGCCAA 62.623 60.000 28.98 19.77 29.52 4.52
6496 6844 2.023414 TAGGTCGATTCGGCGCCAAT 62.023 55.000 28.98 23.51 29.52 3.16
6497 6845 2.324477 GTCGATTCGGCGCCAATG 59.676 61.111 28.98 10.81 0.00 2.82
6498 6846 2.171079 GTCGATTCGGCGCCAATGA 61.171 57.895 28.98 13.41 0.00 2.57
6502 6852 1.077787 ATTCGGCGCCAATGAGGAA 60.078 52.632 28.98 20.27 41.22 3.36
6508 6858 1.334869 GGCGCCAATGAGGAATAGTTG 59.665 52.381 24.80 0.00 41.22 3.16
6509 6859 2.017049 GCGCCAATGAGGAATAGTTGT 58.983 47.619 0.00 0.00 41.22 3.32
6510 6860 2.423538 GCGCCAATGAGGAATAGTTGTT 59.576 45.455 0.00 0.00 41.22 2.83
6534 6884 0.109827 TGAATGACACGCAATTGCCG 60.110 50.000 24.24 20.12 37.91 5.69
6554 6904 4.722855 GCATGTGGTTGCGGGTGC 62.723 66.667 0.00 0.00 43.20 5.01
6555 6905 2.985282 CATGTGGTTGCGGGTGCT 60.985 61.111 0.00 0.00 43.34 4.40
6556 6906 2.203480 ATGTGGTTGCGGGTGCTT 60.203 55.556 0.00 0.00 43.34 3.91
6557 6907 2.563798 ATGTGGTTGCGGGTGCTTG 61.564 57.895 0.00 0.00 43.34 4.01
6569 6919 4.802051 TGCTTGGGCATCCGAGGC 62.802 66.667 0.00 0.00 44.28 4.70
6577 6927 4.812476 CATCCGAGGCCGACGCAA 62.812 66.667 17.43 9.61 38.22 4.85
6578 6928 4.814294 ATCCGAGGCCGACGCAAC 62.814 66.667 17.43 0.00 38.22 4.17
6612 6962 2.818132 GTGCCTCATAGAGCGCCT 59.182 61.111 2.29 3.28 33.38 5.52
6624 6974 3.827898 GCGCCTGCTACTCCTCGT 61.828 66.667 0.00 0.00 38.39 4.18
6636 6986 0.109226 CTCCTCGTGAAGTTCGGGTC 60.109 60.000 0.00 0.00 0.00 4.46
6673 7035 3.304996 CCTCGCTCGTGAACTCATCATAT 60.305 47.826 0.00 0.00 40.97 1.78
6681 7043 4.560427 CGTGAACTCATCATATATCTGGCG 59.440 45.833 0.00 0.00 40.97 5.69
6700 7062 2.203112 TCCGCCAGCTGATGATGC 60.203 61.111 17.39 8.68 0.00 3.91
6724 7086 1.019805 GGAGGTTGAGGTTGTAGCGC 61.020 60.000 0.00 0.00 0.00 5.92
6727 7089 1.298859 GGTTGAGGTTGTAGCGCTGG 61.299 60.000 22.90 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.806237 GGGTCTAGAAGACGCGGG 59.194 66.667 12.47 0.00 45.91 6.13
21 22 1.102222 CGGGGAGGGTCTAGAAGACG 61.102 65.000 0.00 0.00 45.96 4.18
44 55 3.017896 TTAGGGGACGGGAGGGGAG 62.018 68.421 0.00 0.00 0.00 4.30
49 60 2.767073 GGGGTTAGGGGACGGGAG 60.767 72.222 0.00 0.00 0.00 4.30
505 520 1.788308 CGCGTACCAGAGAACGAAAAA 59.212 47.619 0.00 0.00 41.55 1.94
506 521 1.411394 CGCGTACCAGAGAACGAAAA 58.589 50.000 0.00 0.00 41.55 2.29
512 527 0.242825 CAGAACCGCGTACCAGAGAA 59.757 55.000 4.92 0.00 0.00 2.87
533 553 1.847798 AATACTGGGGCGGCAACTCA 61.848 55.000 12.47 2.29 0.00 3.41
670 697 1.135315 CAGATTTTGCTCCGCACCG 59.865 57.895 0.00 0.00 38.71 4.94
711 738 6.842163 AGATATTGTTTTTGCTCGACGAATT 58.158 32.000 0.00 0.00 0.00 2.17
713 740 5.444087 CGAGATATTGTTTTTGCTCGACGAA 60.444 40.000 0.00 0.00 45.64 3.85
714 741 4.031314 CGAGATATTGTTTTTGCTCGACGA 59.969 41.667 0.00 0.00 45.64 4.20
715 742 4.255999 CGAGATATTGTTTTTGCTCGACG 58.744 43.478 0.00 0.00 45.64 5.12
716 743 4.022475 GCGAGATATTGTTTTTGCTCGAC 58.978 43.478 13.40 2.37 45.64 4.20
717 744 3.682377 TGCGAGATATTGTTTTTGCTCGA 59.318 39.130 13.40 0.00 45.64 4.04
718 745 4.002267 TGCGAGATATTGTTTTTGCTCG 57.998 40.909 0.00 0.00 45.57 5.03
719 746 6.875926 AATTGCGAGATATTGTTTTTGCTC 57.124 33.333 0.00 0.00 0.00 4.26
720 747 8.647226 GTTAAATTGCGAGATATTGTTTTTGCT 58.353 29.630 0.00 0.00 0.00 3.91
721 748 8.431593 TGTTAAATTGCGAGATATTGTTTTTGC 58.568 29.630 0.00 0.00 0.00 3.68
722 749 9.726034 GTGTTAAATTGCGAGATATTGTTTTTG 57.274 29.630 0.00 0.00 0.00 2.44
727 754 5.263185 GCGTGTTAAATTGCGAGATATTGT 58.737 37.500 0.00 0.00 0.00 2.71
728 755 4.670621 GGCGTGTTAAATTGCGAGATATTG 59.329 41.667 0.00 0.00 0.00 1.90
732 759 1.062002 CGGCGTGTTAAATTGCGAGAT 59.938 47.619 0.00 0.00 0.00 2.75
734 761 0.165079 ACGGCGTGTTAAATTGCGAG 59.835 50.000 13.76 0.00 0.00 5.03
760 787 1.428912 TGCTTTCCCCCAATCTTCAGT 59.571 47.619 0.00 0.00 0.00 3.41
791 819 1.396653 ATCAAGGTGGCTAGCAATGC 58.603 50.000 18.24 0.00 0.00 3.56
792 820 3.285484 AGAATCAAGGTGGCTAGCAATG 58.715 45.455 18.24 7.51 0.00 2.82
794 822 3.370527 GGTAGAATCAAGGTGGCTAGCAA 60.371 47.826 18.24 0.85 31.77 3.91
796 824 2.803492 CGGTAGAATCAAGGTGGCTAGC 60.803 54.545 6.04 6.04 0.00 3.42
798 826 2.429610 GACGGTAGAATCAAGGTGGCTA 59.570 50.000 0.00 0.00 0.00 3.93
801 829 3.056107 TGAAGACGGTAGAATCAAGGTGG 60.056 47.826 0.00 0.00 0.00 4.61
812 840 3.381590 TGGACAGATCATGAAGACGGTAG 59.618 47.826 0.00 0.00 0.00 3.18
819 847 3.338249 ACGGTTTGGACAGATCATGAAG 58.662 45.455 0.00 0.00 0.00 3.02
826 854 1.066143 CAGCCTACGGTTTGGACAGAT 60.066 52.381 4.39 0.00 0.00 2.90
828 856 0.034896 ACAGCCTACGGTTTGGACAG 59.965 55.000 4.39 0.00 0.00 3.51
880 912 9.297037 TGCAGCTACTGTTCTTCTATATATGTA 57.703 33.333 0.00 0.00 33.43 2.29
886 918 5.067936 GGAGTGCAGCTACTGTTCTTCTATA 59.932 44.000 0.00 0.00 33.43 1.31
911 943 7.279981 CCATGTCACTCATCGAAACCTATTAAA 59.720 37.037 0.00 0.00 34.09 1.52
922 954 1.173913 ACGTCCATGTCACTCATCGA 58.826 50.000 0.00 0.00 34.09 3.59
923 955 2.844122 TACGTCCATGTCACTCATCG 57.156 50.000 0.00 0.00 34.09 3.84
926 958 3.572682 AGAACTTACGTCCATGTCACTCA 59.427 43.478 0.00 0.00 0.00 3.41
934 966 4.081420 AGAGCATCAAGAACTTACGTCCAT 60.081 41.667 0.00 0.00 37.82 3.41
942 974 4.252073 CAGTAGCAGAGCATCAAGAACTT 58.748 43.478 0.00 0.00 37.82 2.66
943 975 3.859443 CAGTAGCAGAGCATCAAGAACT 58.141 45.455 0.00 0.00 37.82 3.01
966 998 6.317140 GCAGAATTGGTCAGAACAAGATCATA 59.683 38.462 15.63 0.00 0.00 2.15
972 1004 4.202040 TGTTGCAGAATTGGTCAGAACAAG 60.202 41.667 7.08 0.00 0.00 3.16
999 1031 1.415659 CTCTCTCCATTCCGCTCCATT 59.584 52.381 0.00 0.00 0.00 3.16
1007 1039 2.045524 TGAGATGGCTCTCTCCATTCC 58.954 52.381 12.91 0.00 46.29 3.01
1089 1121 2.421751 TCCTCGTAGTCCTCTCCTTG 57.578 55.000 0.00 0.00 0.00 3.61
1104 1136 3.691609 GGACATTGAACATGACCTTCCTC 59.308 47.826 0.00 0.00 32.48 3.71
1176 1208 1.410882 CTCTCGACTCCCTTCAATCCC 59.589 57.143 0.00 0.00 0.00 3.85
1188 1220 0.033601 AGACCTGGATGCTCTCGACT 60.034 55.000 0.00 0.00 0.00 4.18
1245 1277 3.992260 AATCTTACATCGGTCTCCTCG 57.008 47.619 0.00 0.00 0.00 4.63
1302 1337 8.110860 AGTAACTACCTCCACATTGAAAAATG 57.889 34.615 0.00 0.00 36.29 2.32
1313 1349 7.995488 TCCATAGTAAGTAGTAACTACCTCCAC 59.005 40.741 0.00 0.00 37.65 4.02
1345 1381 3.197333 CCCCATTTATGTCAACCATGCAA 59.803 43.478 0.00 0.00 34.86 4.08
1351 1387 7.234661 TCTTTTTACCCCATTTATGTCAACC 57.765 36.000 0.00 0.00 0.00 3.77
1352 1388 7.320399 CCTCTTTTTACCCCATTTATGTCAAC 58.680 38.462 0.00 0.00 0.00 3.18
1356 1392 6.160483 TCCCTCTTTTTACCCCATTTATGT 57.840 37.500 0.00 0.00 0.00 2.29
1383 1419 6.752815 GGACACAAGAAGCTACTATGTACTTC 59.247 42.308 0.00 0.00 39.03 3.01
1386 1422 6.037098 CAGGACACAAGAAGCTACTATGTAC 58.963 44.000 0.00 0.00 0.00 2.90
1392 1428 3.134804 ACAACAGGACACAAGAAGCTACT 59.865 43.478 0.00 0.00 0.00 2.57
1403 1441 5.767816 AACTTGGATTAACAACAGGACAC 57.232 39.130 0.00 0.00 0.00 3.67
1435 1474 2.938956 ATGCCCCTAGTTCATGTAGC 57.061 50.000 0.00 0.00 0.00 3.58
1436 1475 6.808008 CAAATATGCCCCTAGTTCATGTAG 57.192 41.667 0.00 0.00 0.00 2.74
1477 1516 3.254657 CCTGAAAGCAAACATTTCCCGTA 59.745 43.478 0.00 0.00 36.11 4.02
1492 1531 6.830873 AGGACAAAATTCATCTCCTGAAAG 57.169 37.500 0.00 0.00 46.62 2.62
1522 1561 1.908619 TGACCTGGCAGCTAAATCAGA 59.091 47.619 9.56 0.00 0.00 3.27
1525 1564 2.680339 GAGTTGACCTGGCAGCTAAATC 59.320 50.000 9.56 8.43 29.01 2.17
1546 1585 9.656040 CTGAATATCAAGGGAAAGATGAGATAG 57.344 37.037 0.00 0.00 0.00 2.08
1590 1629 9.210228 AGGTAGCTAAAATAGTTGGTAGTACAT 57.790 33.333 2.06 0.00 0.00 2.29
1596 1635 9.577222 AACAAAAGGTAGCTAAAATAGTTGGTA 57.423 29.630 0.00 0.00 0.00 3.25
1610 1649 1.339929 CCCACACCAACAAAAGGTAGC 59.660 52.381 0.00 0.00 37.23 3.58
1666 1705 6.867662 AAACGATCTGACAATTTCTTGACT 57.132 33.333 0.00 0.00 36.20 3.41
1685 1724 7.129622 TCGGCAATTCATTTATAAGCTAAACG 58.870 34.615 0.00 0.00 0.00 3.60
1692 1731 7.264373 AGTTCCTCGGCAATTCATTTATAAG 57.736 36.000 0.00 0.00 0.00 1.73
1761 1800 6.369340 TGGCAGTTCATTTATGCTCAAAATTG 59.631 34.615 0.00 0.00 39.88 2.32
1796 1835 9.965902 ATCACTGTATTAAGAAAGAAAGGTCAT 57.034 29.630 0.00 0.00 0.00 3.06
1917 1956 3.287312 AGGTGCAACATTTTCGTCATG 57.713 42.857 3.64 0.00 39.98 3.07
1921 1960 3.219281 ACCTAAGGTGCAACATTTTCGT 58.781 40.909 3.64 0.00 37.74 3.85
2087 2126 4.103365 AGATTCAGAACAGCTCGTACAG 57.897 45.455 0.00 0.00 0.00 2.74
2093 2132 5.006165 CCGTTCAATAGATTCAGAACAGCTC 59.994 44.000 0.00 0.00 40.14 4.09
2339 2378 3.700038 CCTCTACAGTTTCCAGTACCGAT 59.300 47.826 0.00 0.00 0.00 4.18
2384 2423 4.816385 ACTGTAACTGTTTGACCTGATGTG 59.184 41.667 0.00 0.00 0.00 3.21
2471 2510 2.224281 GGCATTAAAGCATTTAGGGGGC 60.224 50.000 4.90 0.00 42.24 5.80
2947 2990 4.452455 AGCTCCAACGTAAAATCTGACAAG 59.548 41.667 0.00 0.00 0.00 3.16
3063 3106 2.413112 CGTGTCTGATGTTAGTGCCTTG 59.587 50.000 0.00 0.00 0.00 3.61
3276 3319 4.573201 TCGTTTCTTTGAAGTAACTGGGTG 59.427 41.667 10.24 0.00 35.10 4.61
3417 3460 4.832823 CCAAAAATACCAACCTTGTCTCCT 59.167 41.667 0.00 0.00 0.00 3.69
3423 3466 6.991938 TCAGAATCCAAAAATACCAACCTTG 58.008 36.000 0.00 0.00 0.00 3.61
3460 3503 8.220755 TCAGGGCAGTACATGATAAATAAAAC 57.779 34.615 0.00 0.00 0.00 2.43
3462 3505 7.040478 GCATCAGGGCAGTACATGATAAATAAA 60.040 37.037 0.00 0.00 31.35 1.40
3480 3523 6.475596 AAAAGGATAATTGAAGCATCAGGG 57.524 37.500 0.00 0.00 36.78 4.45
3499 3542 8.635328 ACAGTACCACCAATAACCTTTAAAAAG 58.365 33.333 0.00 0.00 35.79 2.27
3535 3578 5.099575 GTGGCCTTAACAATTATGAAACCG 58.900 41.667 3.32 0.00 0.00 4.44
3583 3626 5.204292 TCAACTAGCTGGACTATCTGTGAT 58.796 41.667 3.17 0.00 0.00 3.06
3696 3739 2.679059 GCAGAGCAACATAGCAGGAGAA 60.679 50.000 0.00 0.00 36.85 2.87
3721 3775 5.163581 ACCATGCTCTGATTATGCAAAAGAC 60.164 40.000 0.00 0.00 40.24 3.01
3752 3806 0.463295 CCACATGAGTAGGCAGGCAG 60.463 60.000 0.00 0.00 0.00 4.85
3754 3808 0.035056 AACCACATGAGTAGGCAGGC 60.035 55.000 0.00 0.00 0.00 4.85
3755 3809 1.278985 TGAACCACATGAGTAGGCAGG 59.721 52.381 0.00 0.00 0.00 4.85
3756 3810 2.768253 TGAACCACATGAGTAGGCAG 57.232 50.000 0.00 0.00 0.00 4.85
3757 3811 4.835284 TTATGAACCACATGAGTAGGCA 57.165 40.909 0.00 0.00 39.77 4.75
3758 3812 5.009010 CCAATTATGAACCACATGAGTAGGC 59.991 44.000 0.00 0.00 39.77 3.93
3764 3818 6.945435 ACTGTAACCAATTATGAACCACATGA 59.055 34.615 0.00 0.00 39.77 3.07
3766 3820 8.107095 ACTACTGTAACCAATTATGAACCACAT 58.893 33.333 0.00 0.00 42.39 3.21
3800 3854 5.950758 ACGTTTGCATAACTTTGATACCA 57.049 34.783 9.17 0.00 0.00 3.25
3809 3863 6.373216 ACCATGTACATAACGTTTGCATAACT 59.627 34.615 5.91 0.00 0.00 2.24
3820 3874 6.504398 ACTCATACTGACCATGTACATAACG 58.496 40.000 8.32 1.71 0.00 3.18
3823 3877 7.996644 TGACTACTCATACTGACCATGTACATA 59.003 37.037 8.32 0.00 0.00 2.29
3833 3887 3.024547 TGGGCTGACTACTCATACTGAC 58.975 50.000 0.00 0.00 0.00 3.51
3834 3888 3.053619 TCTGGGCTGACTACTCATACTGA 60.054 47.826 0.00 0.00 0.00 3.41
3837 3891 3.292460 AGTCTGGGCTGACTACTCATAC 58.708 50.000 10.89 0.00 44.53 2.39
3853 3907 0.380733 TAGCACATACGCCGAGTCTG 59.619 55.000 0.00 0.00 33.67 3.51
3891 3970 5.125097 ACAAGTTCACTACCGGAGTATACAG 59.875 44.000 9.46 8.07 35.64 2.74
3902 3981 6.861065 TTTGATCTTGACAAGTTCACTACC 57.139 37.500 22.74 2.12 37.06 3.18
3951 4032 6.202379 ACGGAAAAGAACAGAGTTAAACTAGC 59.798 38.462 0.00 0.00 0.00 3.42
3976 4057 2.083774 CTGCTGGAAAACTAATCGGCA 58.916 47.619 0.00 0.00 0.00 5.69
3979 4060 6.236017 TGTTTACTGCTGGAAAACTAATCG 57.764 37.500 18.09 0.00 34.84 3.34
4003 4084 6.777580 GGTATGATTTCCCACAATGAACCTAT 59.222 38.462 0.00 0.00 0.00 2.57
4042 4123 7.756722 ACAGCAAGATAATACTGAAACATTTGC 59.243 33.333 0.00 0.00 37.91 3.68
4051 4132 5.422012 TGACCTGACAGCAAGATAATACTGA 59.578 40.000 0.00 0.00 34.25 3.41
4052 4133 5.664457 TGACCTGACAGCAAGATAATACTG 58.336 41.667 0.00 0.00 36.22 2.74
4058 4139 4.285020 AGAGATGACCTGACAGCAAGATA 58.715 43.478 0.00 0.00 0.00 1.98
4061 4142 3.001414 CAAGAGATGACCTGACAGCAAG 58.999 50.000 0.00 0.00 0.00 4.01
4064 4145 2.495270 TCTCAAGAGATGACCTGACAGC 59.505 50.000 0.00 0.00 33.47 4.40
4065 4146 4.015764 TCTCTCAAGAGATGACCTGACAG 58.984 47.826 5.62 0.00 45.48 3.51
4066 4147 4.039603 TCTCTCAAGAGATGACCTGACA 57.960 45.455 5.62 0.00 45.48 3.58
4094 4176 7.743104 ACGTGAAGAAACAATCAATATGAGAC 58.257 34.615 0.00 0.00 0.00 3.36
4116 4198 1.406180 GCCACCACAACCTTAAAACGT 59.594 47.619 0.00 0.00 0.00 3.99
4118 4200 2.801699 GCAGCCACCACAACCTTAAAAC 60.802 50.000 0.00 0.00 0.00 2.43
4197 4279 2.178580 TCCATTGCCTTTGGAATCCAC 58.821 47.619 0.00 0.00 40.29 4.02
4409 4491 0.451383 GCACACACACACACACACAT 59.549 50.000 0.00 0.00 0.00 3.21
4480 4580 7.115947 GTGTGTGTTAGAATACCACAGTAGAAC 59.884 40.741 0.00 0.00 39.58 3.01
4495 4595 2.555325 CGGTAGTCCAGTGTGTGTTAGA 59.445 50.000 0.00 0.00 0.00 2.10
4512 4612 4.451096 GCAAACAGAGAGATCAAAACGGTA 59.549 41.667 0.00 0.00 0.00 4.02
4686 4875 6.181190 AGTTAGAGGAAATTAGAGCCAAACC 58.819 40.000 0.00 0.00 0.00 3.27
4689 4878 7.016153 TCAAGTTAGAGGAAATTAGAGCCAA 57.984 36.000 0.00 0.00 0.00 4.52
4702 4891 9.023967 CAAAGTCACAATTTTTCAAGTTAGAGG 57.976 33.333 0.00 0.00 0.00 3.69
4855 5046 4.778143 ACATTCGCGCTGACCCCC 62.778 66.667 14.25 0.00 0.00 5.40
4904 5095 3.368116 GCTTCAAATTCTTGCATGAGCCT 60.368 43.478 0.00 0.00 41.13 4.58
4930 5121 2.106566 TCCTCCACTTCAGAGCTCATC 58.893 52.381 17.77 0.00 0.00 2.92
4978 5169 0.947244 CAACAAGCACACAGGTCCTC 59.053 55.000 0.00 0.00 0.00 3.71
4999 5190 3.945921 CTCCGCAGATAACCCTATCGATA 59.054 47.826 4.78 4.78 39.23 2.92
5032 5223 0.103937 CAGGCTTCAGAGGATCCGAC 59.896 60.000 5.98 4.95 33.66 4.79
5059 5250 2.412847 GCTAAGGTGTGAAATGACACGC 60.413 50.000 0.00 0.00 46.13 5.34
5062 5253 4.350368 TGAGCTAAGGTGTGAAATGACA 57.650 40.909 0.00 0.00 0.00 3.58
5110 5301 2.345991 GTAGCCCAGTTGTCGCCA 59.654 61.111 0.00 0.00 0.00 5.69
5182 5373 0.250727 TCTCGGCTTTTCCAACTGGG 60.251 55.000 0.00 0.00 35.41 4.45
5197 5388 3.120060 CCTGCAAGTCCTTGATTTTCTCG 60.120 47.826 11.12 0.00 42.93 4.04
5203 5394 3.679389 CTGTACCTGCAAGTCCTTGATT 58.321 45.455 11.12 0.00 42.93 2.57
5223 5414 0.773644 TGCAGAGAAGGGAAAAGGCT 59.226 50.000 0.00 0.00 0.00 4.58
5224 5415 1.172175 CTGCAGAGAAGGGAAAAGGC 58.828 55.000 8.42 0.00 0.00 4.35
5232 5426 5.128499 CAGGTATATATCCCTGCAGAGAAGG 59.872 48.000 17.39 7.96 41.65 3.46
5236 5430 3.133721 GCCAGGTATATATCCCTGCAGAG 59.866 52.174 17.39 0.39 45.68 3.35
5239 5433 2.914536 TGCCAGGTATATATCCCTGCA 58.085 47.619 16.96 15.07 45.68 4.41
5248 5442 5.879763 TGCAGAATGTAATGCCAGGTATAT 58.120 37.500 0.00 0.00 41.85 0.86
5249 5443 5.303259 TGCAGAATGTAATGCCAGGTATA 57.697 39.130 0.00 0.00 41.85 1.47
5250 5444 4.169059 TGCAGAATGTAATGCCAGGTAT 57.831 40.909 0.00 0.00 41.85 2.73
5267 5461 2.408271 TGGAGTAAGCAGGAATGCAG 57.592 50.000 2.73 0.00 37.25 4.41
5324 5518 4.067913 TCGTTTACCCCGTCGCCC 62.068 66.667 0.00 0.00 0.00 6.13
5787 5992 1.750399 CAATTAGCCGCAGCCCACT 60.750 57.895 0.00 0.00 41.25 4.00
5816 6055 1.221466 CGCGTCAGTTCAAGGCTTGA 61.221 55.000 25.38 25.38 38.04 3.02
5817 6056 1.205064 CGCGTCAGTTCAAGGCTTG 59.795 57.895 21.17 21.17 0.00 4.01
5818 6057 1.961277 CCGCGTCAGTTCAAGGCTT 60.961 57.895 4.92 0.00 0.00 4.35
5819 6058 2.172483 ATCCGCGTCAGTTCAAGGCT 62.172 55.000 4.92 0.00 0.00 4.58
5820 6059 1.298859 AATCCGCGTCAGTTCAAGGC 61.299 55.000 4.92 0.00 0.00 4.35
5835 6074 0.038618 GGGCCACACGTTTTCAATCC 60.039 55.000 4.39 0.00 0.00 3.01
5894 6143 3.386402 TCCGCACAAAAAGGAAGGAAAAT 59.614 39.130 0.00 0.00 0.00 1.82
5901 6150 4.599047 AATCATTCCGCACAAAAAGGAA 57.401 36.364 0.00 0.00 46.58 3.36
5902 6151 5.913137 ATAATCATTCCGCACAAAAAGGA 57.087 34.783 0.00 0.00 0.00 3.36
5903 6152 6.966435 AAATAATCATTCCGCACAAAAAGG 57.034 33.333 0.00 0.00 0.00 3.11
5904 6153 8.016497 TCAAAATAATCATTCCGCACAAAAAG 57.984 30.769 0.00 0.00 0.00 2.27
5905 6154 7.953158 TCAAAATAATCATTCCGCACAAAAA 57.047 28.000 0.00 0.00 0.00 1.94
5947 6198 6.316140 TGATGAATAGTTCCGTTTCAAGGATG 59.684 38.462 0.00 0.00 37.65 3.51
5989 6240 1.940613 GTTTTGAGAGTCAGCGTTGGT 59.059 47.619 0.00 0.00 0.00 3.67
5991 6242 1.070577 CGGTTTTGAGAGTCAGCGTTG 60.071 52.381 0.00 0.00 0.00 4.10
5995 6246 3.614616 CAGTATCGGTTTTGAGAGTCAGC 59.385 47.826 0.00 0.00 0.00 4.26
5996 6247 4.810790 ACAGTATCGGTTTTGAGAGTCAG 58.189 43.478 0.00 0.00 0.00 3.51
5997 6248 4.866508 ACAGTATCGGTTTTGAGAGTCA 57.133 40.909 0.00 0.00 0.00 3.41
6010 6261 2.857748 TCTGCGCACAAATACAGTATCG 59.142 45.455 5.66 0.00 0.00 2.92
6013 6264 2.993220 CAGTCTGCGCACAAATACAGTA 59.007 45.455 5.66 0.00 0.00 2.74
6015 6266 1.800586 ACAGTCTGCGCACAAATACAG 59.199 47.619 5.66 0.00 0.00 2.74
6035 6286 1.596752 ACGCATCAGTGTCCGCAAA 60.597 52.632 0.00 0.00 31.58 3.68
6051 6325 7.061905 GGTATATGATTAAATGGTCGACTCACG 59.938 40.741 16.46 0.00 44.09 4.35
6052 6326 7.331193 GGGTATATGATTAAATGGTCGACTCAC 59.669 40.741 16.46 0.00 0.00 3.51
6053 6327 7.383687 GGGTATATGATTAAATGGTCGACTCA 58.616 38.462 16.46 12.14 0.00 3.41
6055 6329 6.014840 ACGGGTATATGATTAAATGGTCGACT 60.015 38.462 16.46 0.00 0.00 4.18
6056 6330 6.161381 ACGGGTATATGATTAAATGGTCGAC 58.839 40.000 7.13 7.13 0.00 4.20
6057 6331 6.349243 ACGGGTATATGATTAAATGGTCGA 57.651 37.500 0.00 0.00 0.00 4.20
6058 6332 7.977293 TCATACGGGTATATGATTAAATGGTCG 59.023 37.037 0.00 0.00 36.79 4.79
6059 6333 9.095065 GTCATACGGGTATATGATTAAATGGTC 57.905 37.037 0.00 0.00 42.20 4.02
6060 6334 8.598916 TGTCATACGGGTATATGATTAAATGGT 58.401 33.333 0.00 0.00 42.20 3.55
6061 6335 9.613428 ATGTCATACGGGTATATGATTAAATGG 57.387 33.333 0.00 0.00 42.20 3.16
6068 6342 9.567776 TTTTGAAATGTCATACGGGTATATGAT 57.432 29.630 0.00 0.00 42.20 2.45
6069 6343 8.832521 GTTTTGAAATGTCATACGGGTATATGA 58.167 33.333 0.00 0.00 38.88 2.15
6075 6349 5.067273 TCAGTTTTGAAATGTCATACGGGT 58.933 37.500 0.00 0.00 32.48 5.28
6076 6350 5.621197 TCAGTTTTGAAATGTCATACGGG 57.379 39.130 0.00 0.00 32.48 5.28
6077 6351 7.941865 CAAATCAGTTTTGAAATGTCATACGG 58.058 34.615 0.00 0.00 46.36 4.02
6114 6388 8.731275 AAAATCGTCTGGTTACATGAATATCA 57.269 30.769 0.00 0.00 0.00 2.15
6115 6389 8.826710 TGAAAATCGTCTGGTTACATGAATATC 58.173 33.333 0.00 0.00 0.00 1.63
6118 6392 7.630242 ATGAAAATCGTCTGGTTACATGAAT 57.370 32.000 0.00 0.00 0.00 2.57
6129 6404 9.746711 CAGTCTAGTTTAAATGAAAATCGTCTG 57.253 33.333 0.00 0.00 0.00 3.51
6130 6405 9.706691 TCAGTCTAGTTTAAATGAAAATCGTCT 57.293 29.630 0.00 0.00 0.00 4.18
6215 6490 9.401873 GGACGCTTTTGTTTAGTTAAAATATGT 57.598 29.630 0.00 0.00 0.00 2.29
6216 6491 8.572151 CGGACGCTTTTGTTTAGTTAAAATATG 58.428 33.333 0.00 0.00 0.00 1.78
6217 6492 8.505625 TCGGACGCTTTTGTTTAGTTAAAATAT 58.494 29.630 0.00 0.00 0.00 1.28
6218 6493 7.859598 TCGGACGCTTTTGTTTAGTTAAAATA 58.140 30.769 0.00 0.00 0.00 1.40
6219 6494 6.727215 TCGGACGCTTTTGTTTAGTTAAAAT 58.273 32.000 0.00 0.00 0.00 1.82
6220 6495 6.116680 TCGGACGCTTTTGTTTAGTTAAAA 57.883 33.333 0.00 0.00 0.00 1.52
6221 6496 5.731599 TCGGACGCTTTTGTTTAGTTAAA 57.268 34.783 0.00 0.00 0.00 1.52
6224 6499 3.002965 CCTTCGGACGCTTTTGTTTAGTT 59.997 43.478 0.00 0.00 0.00 2.24
6226 6501 2.546789 ACCTTCGGACGCTTTTGTTTAG 59.453 45.455 0.00 0.00 0.00 1.85
6238 6513 7.770201 AGATTTAGACTAGTTAACCTTCGGAC 58.230 38.462 0.88 0.00 0.00 4.79
6243 6518 8.033626 CGGTGAAGATTTAGACTAGTTAACCTT 58.966 37.037 0.88 0.00 0.00 3.50
6245 6520 6.755607 CCGGTGAAGATTTAGACTAGTTAACC 59.244 42.308 0.88 0.00 0.00 2.85
6272 6547 1.640069 CGACGGATGCTTGCTCATG 59.360 57.895 0.00 0.00 0.00 3.07
6273 6548 1.522355 CCGACGGATGCTTGCTCAT 60.522 57.895 8.64 0.00 0.00 2.90
6274 6549 2.125552 CCGACGGATGCTTGCTCA 60.126 61.111 8.64 0.00 0.00 4.26
6275 6550 3.567797 GCCGACGGATGCTTGCTC 61.568 66.667 20.50 0.00 0.00 4.26
6278 6553 2.892425 GAGGCCGACGGATGCTTG 60.892 66.667 20.50 0.00 0.00 4.01
6281 6556 4.467084 TTGGAGGCCGACGGATGC 62.467 66.667 20.50 11.15 0.00 3.91
6283 6558 2.683933 ACTTGGAGGCCGACGGAT 60.684 61.111 20.50 4.61 0.00 4.18
6285 6560 4.452733 GGACTTGGAGGCCGACGG 62.453 72.222 10.29 10.29 30.77 4.79
6291 6566 3.017442 GGAACAATAAGGACTTGGAGGC 58.983 50.000 0.00 0.00 0.00 4.70
6305 6586 1.503347 AGGGACACAAAGGGGAACAAT 59.497 47.619 0.00 0.00 0.00 2.71
6322 6637 4.742201 CACGGCCGTCAGACAGGG 62.742 72.222 31.80 11.20 0.00 4.45
6324 6639 2.126307 CTCACGGCCGTCAGACAG 60.126 66.667 31.80 16.95 0.00 3.51
6325 6640 4.357947 GCTCACGGCCGTCAGACA 62.358 66.667 34.70 11.61 34.27 3.41
6353 6668 1.168407 TTGCCAGTGACAGCAGCTTC 61.168 55.000 0.00 0.00 40.73 3.86
6355 6670 1.600076 CTTGCCAGTGACAGCAGCT 60.600 57.895 0.00 0.00 40.73 4.24
6356 6671 1.168407 TTCTTGCCAGTGACAGCAGC 61.168 55.000 0.74 0.00 40.73 5.25
6357 6672 1.266175 CTTTCTTGCCAGTGACAGCAG 59.734 52.381 0.74 0.00 40.73 4.24
6358 6673 1.134128 TCTTTCTTGCCAGTGACAGCA 60.134 47.619 0.00 0.00 37.18 4.41
6359 6674 1.534595 CTCTTTCTTGCCAGTGACAGC 59.465 52.381 0.00 0.00 0.00 4.40
6360 6675 2.843701 ACTCTTTCTTGCCAGTGACAG 58.156 47.619 0.00 0.00 0.00 3.51
6362 6677 5.065988 TGTTTTACTCTTTCTTGCCAGTGAC 59.934 40.000 0.00 0.00 0.00 3.67
6363 6678 5.189928 TGTTTTACTCTTTCTTGCCAGTGA 58.810 37.500 0.00 0.00 0.00 3.41
6364 6679 5.499139 TGTTTTACTCTTTCTTGCCAGTG 57.501 39.130 0.00 0.00 0.00 3.66
6365 6680 5.010012 CCATGTTTTACTCTTTCTTGCCAGT 59.990 40.000 0.00 0.00 0.00 4.00
6366 6681 5.464168 CCATGTTTTACTCTTTCTTGCCAG 58.536 41.667 0.00 0.00 0.00 4.85
6367 6682 4.280677 CCCATGTTTTACTCTTTCTTGCCA 59.719 41.667 0.00 0.00 0.00 4.92
6368 6683 4.522789 TCCCATGTTTTACTCTTTCTTGCC 59.477 41.667 0.00 0.00 0.00 4.52
6369 6684 5.009610 TGTCCCATGTTTTACTCTTTCTTGC 59.990 40.000 0.00 0.00 0.00 4.01
6370 6685 6.633500 TGTCCCATGTTTTACTCTTTCTTG 57.367 37.500 0.00 0.00 0.00 3.02
6371 6686 6.209391 CCATGTCCCATGTTTTACTCTTTCTT 59.791 38.462 3.75 0.00 0.00 2.52
6372 6687 5.711976 CCATGTCCCATGTTTTACTCTTTCT 59.288 40.000 3.75 0.00 0.00 2.52
6373 6688 5.710099 TCCATGTCCCATGTTTTACTCTTTC 59.290 40.000 3.75 0.00 0.00 2.62
6374 6689 5.640147 TCCATGTCCCATGTTTTACTCTTT 58.360 37.500 3.75 0.00 0.00 2.52
6375 6690 5.255397 TCCATGTCCCATGTTTTACTCTT 57.745 39.130 3.75 0.00 0.00 2.85
6376 6691 4.927267 TCCATGTCCCATGTTTTACTCT 57.073 40.909 3.75 0.00 0.00 3.24
6377 6692 5.067805 GGAATCCATGTCCCATGTTTTACTC 59.932 44.000 0.00 0.00 0.00 2.59
6378 6693 4.956075 GGAATCCATGTCCCATGTTTTACT 59.044 41.667 0.00 0.00 0.00 2.24
6379 6694 4.709397 TGGAATCCATGTCCCATGTTTTAC 59.291 41.667 0.00 0.00 33.89 2.01
6380 6695 4.940483 TGGAATCCATGTCCCATGTTTTA 58.060 39.130 0.00 0.00 33.89 1.52
6381 6696 3.788933 TGGAATCCATGTCCCATGTTTT 58.211 40.909 0.00 0.00 33.89 2.43
6382 6697 3.471430 TGGAATCCATGTCCCATGTTT 57.529 42.857 0.00 0.00 33.89 2.83
6383 6698 3.693526 ATGGAATCCATGTCCCATGTT 57.306 42.857 14.96 0.00 43.39 2.71
6396 6711 2.173569 ACAAGGAGTAGGGCATGGAATC 59.826 50.000 0.00 0.00 0.00 2.52
6397 6712 2.173569 GACAAGGAGTAGGGCATGGAAT 59.826 50.000 0.00 0.00 0.00 3.01
6398 6713 1.559682 GACAAGGAGTAGGGCATGGAA 59.440 52.381 0.00 0.00 0.00 3.53
6400 6715 0.179073 CGACAAGGAGTAGGGCATGG 60.179 60.000 0.00 0.00 0.00 3.66
6420 6746 1.340248 TCGTCAAACTCACCTCCACTC 59.660 52.381 0.00 0.00 0.00 3.51
6433 6781 2.993220 CTCGTCCACATTCATCGTCAAA 59.007 45.455 0.00 0.00 0.00 2.69
6437 6785 0.460284 GGCTCGTCCACATTCATCGT 60.460 55.000 0.00 0.00 34.01 3.73
6467 6815 1.065701 GAATCGACCTAGCTGCTTCGA 59.934 52.381 22.43 22.43 44.06 3.71
6468 6816 1.482278 GAATCGACCTAGCTGCTTCG 58.518 55.000 7.79 11.84 0.00 3.79
6469 6817 1.482278 CGAATCGACCTAGCTGCTTC 58.518 55.000 7.79 0.00 0.00 3.86
6470 6818 0.103208 CCGAATCGACCTAGCTGCTT 59.897 55.000 7.79 0.00 0.00 3.91
6474 6822 2.722487 CGCCGAATCGACCTAGCT 59.278 61.111 3.36 0.00 0.00 3.32
6476 6824 2.354773 GGCGCCGAATCGACCTAG 60.355 66.667 12.58 0.00 0.00 3.02
6477 6825 2.023414 ATTGGCGCCGAATCGACCTA 62.023 55.000 22.97 0.00 36.46 3.08
6478 6826 3.385749 ATTGGCGCCGAATCGACCT 62.386 57.895 22.97 0.00 36.46 3.85
6479 6827 2.895372 ATTGGCGCCGAATCGACC 60.895 61.111 22.97 3.16 36.46 4.79
6480 6828 2.094126 CTCATTGGCGCCGAATCGAC 62.094 60.000 22.97 0.00 38.14 4.20
6481 6829 1.882625 CTCATTGGCGCCGAATCGA 60.883 57.895 22.97 16.28 0.00 3.59
6482 6830 2.628106 CTCATTGGCGCCGAATCG 59.372 61.111 22.97 12.60 0.00 3.34
6483 6831 1.095228 TTCCTCATTGGCGCCGAATC 61.095 55.000 22.97 0.00 35.26 2.52
6485 6833 0.179234 TATTCCTCATTGGCGCCGAA 59.821 50.000 22.97 17.43 35.26 4.30
6486 6834 0.249868 CTATTCCTCATTGGCGCCGA 60.250 55.000 21.20 21.20 35.26 5.54
6487 6835 0.532862 ACTATTCCTCATTGGCGCCG 60.533 55.000 23.90 7.87 35.26 6.46
6488 6836 1.334869 CAACTATTCCTCATTGGCGCC 59.665 52.381 22.73 22.73 35.26 6.53
6490 6838 3.181497 CCAACAACTATTCCTCATTGGCG 60.181 47.826 0.00 0.00 35.26 5.69
6492 6840 3.181497 CGCCAACAACTATTCCTCATTGG 60.181 47.826 0.00 0.00 38.51 3.16
6494 6842 3.440173 CACGCCAACAACTATTCCTCATT 59.560 43.478 0.00 0.00 0.00 2.57
6495 6843 3.009723 CACGCCAACAACTATTCCTCAT 58.990 45.455 0.00 0.00 0.00 2.90
6496 6844 2.037902 TCACGCCAACAACTATTCCTCA 59.962 45.455 0.00 0.00 0.00 3.86
6497 6845 2.695359 TCACGCCAACAACTATTCCTC 58.305 47.619 0.00 0.00 0.00 3.71
6498 6846 2.851263 TCACGCCAACAACTATTCCT 57.149 45.000 0.00 0.00 0.00 3.36
6502 6852 3.188460 GTGTCATTCACGCCAACAACTAT 59.812 43.478 0.00 0.00 37.31 2.12
6538 6888 2.563798 AAGCACCCGCAACCACATG 61.564 57.895 0.00 0.00 42.27 3.21
6539 6889 2.203480 AAGCACCCGCAACCACAT 60.203 55.556 0.00 0.00 42.27 3.21
6540 6890 3.215568 CAAGCACCCGCAACCACA 61.216 61.111 0.00 0.00 42.27 4.17
6541 6891 3.977244 CCAAGCACCCGCAACCAC 61.977 66.667 0.00 0.00 42.27 4.16
6560 6910 4.812476 TTGCGTCGGCCTCGGATG 62.812 66.667 16.56 6.65 38.85 3.51
6586 6936 2.857575 CTATGAGGCACCGCACAGCA 62.858 60.000 0.00 0.00 0.00 4.41
6587 6937 2.125147 TATGAGGCACCGCACAGC 60.125 61.111 0.00 0.00 0.00 4.40
6588 6938 0.529337 CTCTATGAGGCACCGCACAG 60.529 60.000 0.00 0.00 0.00 3.66
6589 6939 1.517361 CTCTATGAGGCACCGCACA 59.483 57.895 0.00 0.00 0.00 4.57
6590 6940 1.884926 GCTCTATGAGGCACCGCAC 60.885 63.158 0.00 0.00 0.00 5.34
6591 6941 2.501128 GCTCTATGAGGCACCGCA 59.499 61.111 0.00 0.00 0.00 5.69
6592 6942 2.659897 CGCTCTATGAGGCACCGC 60.660 66.667 0.00 0.00 0.00 5.68
6593 6943 2.659897 GCGCTCTATGAGGCACCG 60.660 66.667 0.00 0.00 0.00 4.94
6594 6944 2.280457 GGCGCTCTATGAGGCACC 60.280 66.667 7.64 0.00 40.55 5.01
6595 6945 1.593750 CAGGCGCTCTATGAGGCAC 60.594 63.158 7.64 0.00 43.12 5.01
6596 6946 2.817424 CAGGCGCTCTATGAGGCA 59.183 61.111 7.64 0.00 43.12 4.75
6611 6961 2.729467 CGAACTTCACGAGGAGTAGCAG 60.729 54.545 0.00 0.00 0.00 4.24
6612 6962 1.199327 CGAACTTCACGAGGAGTAGCA 59.801 52.381 0.00 0.00 0.00 3.49
6616 6966 0.826672 ACCCGAACTTCACGAGGAGT 60.827 55.000 0.00 0.00 0.00 3.85
6636 6986 1.144936 GAGGAGGCCATGACGGAAG 59.855 63.158 5.01 0.00 36.56 3.46
6692 7054 1.960040 AACCTCCTCGCGCATCATCA 61.960 55.000 8.75 0.00 0.00 3.07
6694 7056 1.522355 CAACCTCCTCGCGCATCAT 60.522 57.895 8.75 0.00 0.00 2.45
6700 7062 1.738099 CAACCTCAACCTCCTCGCG 60.738 63.158 0.00 0.00 0.00 5.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.