Multiple sequence alignment - TraesCS6B01G192200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G192200 chr6B 100.000 5912 0 0 1 5912 226390407 226396318 0.000000e+00 10918.0
1 TraesCS6B01G192200 chr6B 97.701 174 3 1 1 174 279087260 279087432 1.250000e-76 298.0
2 TraesCS6B01G192200 chr6D 93.100 2739 100 33 3201 5912 127377070 127379746 0.000000e+00 3928.0
3 TraesCS6B01G192200 chr6D 91.268 2737 159 52 487 3168 127374277 127376988 0.000000e+00 3657.0
4 TraesCS6B01G192200 chr6D 79.775 356 60 9 188 533 139363430 139363077 1.270000e-61 248.0
5 TraesCS6B01G192200 chr6D 82.203 236 41 1 179 413 127373999 127374234 1.000000e-47 202.0
6 TraesCS6B01G192200 chr6A 96.404 1585 51 6 3201 4780 150984611 150983028 0.000000e+00 2606.0
7 TraesCS6B01G192200 chr6A 88.993 1926 126 48 496 2358 150987501 150985599 0.000000e+00 2303.0
8 TraesCS6B01G192200 chr6A 89.773 1144 58 20 4807 5912 150983032 150981910 0.000000e+00 1410.0
9 TraesCS6B01G192200 chr6A 88.743 835 41 22 2360 3168 150985500 150984693 0.000000e+00 972.0
10 TraesCS6B01G192200 chr6A 98.765 162 2 0 1 162 394619122 394619283 7.500000e-74 289.0
11 TraesCS6B01G192200 chr6A 82.301 226 40 0 188 413 150987778 150987553 4.670000e-46 196.0
12 TraesCS6B01G192200 chr6A 100.000 31 0 0 2358 2388 150985561 150985531 2.300000e-04 58.4
13 TraesCS6B01G192200 chr1B 96.216 185 5 2 1 184 335971462 335971645 9.630000e-78 302.0
14 TraesCS6B01G192200 chr7A 99.390 164 1 0 1 164 696783270 696783107 1.250000e-76 298.0
15 TraesCS6B01G192200 chr7A 74.138 348 72 11 5539 5877 587519894 587519556 1.730000e-25 128.0
16 TraesCS6B01G192200 chr7A 74.138 348 72 11 5539 5877 588739013 588739351 1.730000e-25 128.0
17 TraesCS6B01G192200 chr7A 73.851 348 71 13 5540 5877 586692281 586692618 2.890000e-23 121.0
18 TraesCS6B01G192200 chr4B 99.390 164 1 0 1 164 206785633 206785796 1.250000e-76 298.0
19 TraesCS6B01G192200 chr4A 99.390 164 1 0 1 164 685739483 685739320 1.250000e-76 298.0
20 TraesCS6B01G192200 chr5B 98.204 167 3 0 1 167 648995001 648995167 5.790000e-75 292.0
21 TraesCS6B01G192200 chrUn 97.647 170 2 2 1 170 34737868 34738035 2.080000e-74 291.0
22 TraesCS6B01G192200 chrUn 97.110 173 3 2 1 173 53745040 53745210 2.080000e-74 291.0
23 TraesCS6B01G192200 chr7D 74.566 346 74 10 5539 5877 515236276 515236614 7.990000e-29 139.0
24 TraesCS6B01G192200 chr7D 74.212 349 70 13 5539 5877 515220070 515220408 1.730000e-25 128.0
25 TraesCS6B01G192200 chr7D 73.926 349 71 13 5539 5877 514093770 514093432 8.050000e-24 122.0
26 TraesCS6B01G192200 chr7B 74.713 348 70 11 5539 5877 544882580 544882242 7.990000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G192200 chr6B 226390407 226396318 5911 False 10918.000000 10918 100.000000 1 5912 1 chr6B.!!$F1 5911
1 TraesCS6B01G192200 chr6D 127373999 127379746 5747 False 2595.666667 3928 88.857000 179 5912 3 chr6D.!!$F1 5733
2 TraesCS6B01G192200 chr6A 150981910 150987778 5868 True 1257.566667 2606 91.035667 188 5912 6 chr6A.!!$R1 5724

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
163 164 0.042581 TCCCACTATGACCAGCCTCA 59.957 55.0 0.0 0.00 0.00 3.86 F
640 652 0.248215 AGACGCCGTAAACGTATCCG 60.248 55.0 0.0 1.92 45.24 4.18 F
962 1014 0.389025 CCCTTGGAGCAAACAACCAC 59.611 55.0 0.0 0.00 33.20 4.16 F
2754 2939 0.035630 AGTGCCCTGTCTGATTGAGC 60.036 55.0 0.0 0.00 0.00 4.26 F
3280 3540 0.251297 CTGCCATTGTTGGACCAGGA 60.251 55.0 0.0 0.00 46.92 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1017 1077 1.301401 CTCCAGGAACGACCGCAAA 60.301 57.895 0.00 0.00 44.74 3.68 R
2203 2290 1.386533 ACGTCGGGTTGTATCGAGAT 58.613 50.000 0.00 0.00 36.00 2.75 R
2912 3123 2.841442 AGAGGTTCCAGTGTAACAGC 57.159 50.000 0.71 0.00 41.43 4.40 R
4658 4922 0.528684 GGAGGAACTTGCGGATCGAG 60.529 60.000 0.00 0.00 41.55 4.04 R
5273 5580 0.894141 GTGGCCCATGCATGTTAACA 59.106 50.000 24.58 11.41 40.13 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.325660 ACTTTGTAGACTCATTATGCATTGG 57.674 36.000 3.54 0.00 0.00 3.16
30 31 7.112122 ACTTTGTAGACTCATTATGCATTGGA 58.888 34.615 3.54 0.00 0.00 3.53
31 32 7.611467 ACTTTGTAGACTCATTATGCATTGGAA 59.389 33.333 3.54 0.00 0.00 3.53
32 33 7.936496 TTGTAGACTCATTATGCATTGGAAA 57.064 32.000 3.54 0.00 0.00 3.13
33 34 7.320443 TGTAGACTCATTATGCATTGGAAAC 57.680 36.000 3.54 0.00 0.00 2.78
34 35 5.841957 AGACTCATTATGCATTGGAAACC 57.158 39.130 3.54 0.00 0.00 3.27
35 36 4.336433 AGACTCATTATGCATTGGAAACCG 59.664 41.667 3.54 0.00 0.00 4.44
36 37 3.181487 ACTCATTATGCATTGGAAACCGC 60.181 43.478 3.54 0.00 0.00 5.68
37 38 3.023119 TCATTATGCATTGGAAACCGCT 58.977 40.909 3.54 0.00 0.00 5.52
38 39 4.203226 TCATTATGCATTGGAAACCGCTA 58.797 39.130 3.54 0.00 0.00 4.26
39 40 4.826733 TCATTATGCATTGGAAACCGCTAT 59.173 37.500 3.54 0.00 0.00 2.97
40 41 4.566545 TTATGCATTGGAAACCGCTATG 57.433 40.909 3.54 0.00 0.00 2.23
41 42 1.832883 TGCATTGGAAACCGCTATGT 58.167 45.000 0.00 0.00 0.00 2.29
42 43 1.472082 TGCATTGGAAACCGCTATGTG 59.528 47.619 0.00 0.00 0.00 3.21
43 44 1.742831 GCATTGGAAACCGCTATGTGA 59.257 47.619 0.00 0.00 0.00 3.58
44 45 2.358898 GCATTGGAAACCGCTATGTGAT 59.641 45.455 0.00 0.00 0.00 3.06
45 46 3.793129 GCATTGGAAACCGCTATGTGATG 60.793 47.826 0.00 0.00 0.00 3.07
46 47 2.036958 TGGAAACCGCTATGTGATGG 57.963 50.000 0.00 0.00 0.00 3.51
47 48 1.280710 TGGAAACCGCTATGTGATGGT 59.719 47.619 0.00 0.00 35.90 3.55
48 49 2.502130 TGGAAACCGCTATGTGATGGTA 59.498 45.455 0.00 0.00 33.45 3.25
49 50 3.055021 TGGAAACCGCTATGTGATGGTAA 60.055 43.478 0.00 0.00 33.45 2.85
50 51 3.311596 GGAAACCGCTATGTGATGGTAAC 59.688 47.826 0.00 0.00 33.45 2.50
79 80 5.599999 TGTTACTCTATTTGCCTCTCTCC 57.400 43.478 0.00 0.00 0.00 3.71
80 81 5.273208 TGTTACTCTATTTGCCTCTCTCCT 58.727 41.667 0.00 0.00 0.00 3.69
81 82 5.361285 TGTTACTCTATTTGCCTCTCTCCTC 59.639 44.000 0.00 0.00 0.00 3.71
82 83 3.987745 ACTCTATTTGCCTCTCTCCTCA 58.012 45.455 0.00 0.00 0.00 3.86
83 84 4.555689 ACTCTATTTGCCTCTCTCCTCAT 58.444 43.478 0.00 0.00 0.00 2.90
84 85 4.968080 ACTCTATTTGCCTCTCTCCTCATT 59.032 41.667 0.00 0.00 0.00 2.57
85 86 6.139671 ACTCTATTTGCCTCTCTCCTCATTA 58.860 40.000 0.00 0.00 0.00 1.90
86 87 6.613271 ACTCTATTTGCCTCTCTCCTCATTAA 59.387 38.462 0.00 0.00 0.00 1.40
87 88 6.821388 TCTATTTGCCTCTCTCCTCATTAAC 58.179 40.000 0.00 0.00 0.00 2.01
88 89 5.707066 ATTTGCCTCTCTCCTCATTAACT 57.293 39.130 0.00 0.00 0.00 2.24
89 90 6.814954 ATTTGCCTCTCTCCTCATTAACTA 57.185 37.500 0.00 0.00 0.00 2.24
90 91 5.599999 TTGCCTCTCTCCTCATTAACTAC 57.400 43.478 0.00 0.00 0.00 2.73
91 92 4.873010 TGCCTCTCTCCTCATTAACTACT 58.127 43.478 0.00 0.00 0.00 2.57
92 93 5.273208 TGCCTCTCTCCTCATTAACTACTT 58.727 41.667 0.00 0.00 0.00 2.24
93 94 5.127845 TGCCTCTCTCCTCATTAACTACTTG 59.872 44.000 0.00 0.00 0.00 3.16
94 95 5.596845 CCTCTCTCCTCATTAACTACTTGC 58.403 45.833 0.00 0.00 0.00 4.01
95 96 5.452636 CCTCTCTCCTCATTAACTACTTGCC 60.453 48.000 0.00 0.00 0.00 4.52
96 97 5.023452 TCTCTCCTCATTAACTACTTGCCA 58.977 41.667 0.00 0.00 0.00 4.92
97 98 5.086104 TCTCCTCATTAACTACTTGCCAC 57.914 43.478 0.00 0.00 0.00 5.01
98 99 4.530553 TCTCCTCATTAACTACTTGCCACA 59.469 41.667 0.00 0.00 0.00 4.17
99 100 5.189736 TCTCCTCATTAACTACTTGCCACAT 59.810 40.000 0.00 0.00 0.00 3.21
100 101 5.428253 TCCTCATTAACTACTTGCCACATC 58.572 41.667 0.00 0.00 0.00 3.06
101 102 5.045942 TCCTCATTAACTACTTGCCACATCA 60.046 40.000 0.00 0.00 0.00 3.07
102 103 5.065218 CCTCATTAACTACTTGCCACATCAC 59.935 44.000 0.00 0.00 0.00 3.06
103 104 4.941263 TCATTAACTACTTGCCACATCACC 59.059 41.667 0.00 0.00 0.00 4.02
104 105 2.949177 AACTACTTGCCACATCACCA 57.051 45.000 0.00 0.00 0.00 4.17
105 106 3.439857 AACTACTTGCCACATCACCAT 57.560 42.857 0.00 0.00 0.00 3.55
106 107 3.439857 ACTACTTGCCACATCACCATT 57.560 42.857 0.00 0.00 0.00 3.16
107 108 3.766545 ACTACTTGCCACATCACCATTT 58.233 40.909 0.00 0.00 0.00 2.32
108 109 4.151883 ACTACTTGCCACATCACCATTTT 58.848 39.130 0.00 0.00 0.00 1.82
109 110 4.588528 ACTACTTGCCACATCACCATTTTT 59.411 37.500 0.00 0.00 0.00 1.94
110 111 3.731089 ACTTGCCACATCACCATTTTTG 58.269 40.909 0.00 0.00 0.00 2.44
111 112 2.166821 TGCCACATCACCATTTTTGC 57.833 45.000 0.00 0.00 0.00 3.68
112 113 1.693062 TGCCACATCACCATTTTTGCT 59.307 42.857 0.00 0.00 0.00 3.91
113 114 2.104451 TGCCACATCACCATTTTTGCTT 59.896 40.909 0.00 0.00 0.00 3.91
114 115 3.323115 TGCCACATCACCATTTTTGCTTA 59.677 39.130 0.00 0.00 0.00 3.09
115 116 4.020396 TGCCACATCACCATTTTTGCTTAT 60.020 37.500 0.00 0.00 0.00 1.73
116 117 4.330620 GCCACATCACCATTTTTGCTTATG 59.669 41.667 0.00 0.00 0.00 1.90
117 118 5.481105 CCACATCACCATTTTTGCTTATGT 58.519 37.500 0.00 0.00 0.00 2.29
118 119 5.349270 CCACATCACCATTTTTGCTTATGTG 59.651 40.000 0.00 0.00 41.50 3.21
119 120 6.157904 CACATCACCATTTTTGCTTATGTGA 58.842 36.000 0.00 0.00 43.44 3.58
120 121 6.089820 CACATCACCATTTTTGCTTATGTGAC 59.910 38.462 0.00 0.00 43.44 3.67
121 122 5.781210 TCACCATTTTTGCTTATGTGACA 57.219 34.783 0.00 0.00 0.00 3.58
122 123 6.343716 TCACCATTTTTGCTTATGTGACAT 57.656 33.333 2.65 2.65 0.00 3.06
123 124 6.389091 TCACCATTTTTGCTTATGTGACATC 58.611 36.000 0.00 0.00 0.00 3.06
124 125 6.209192 TCACCATTTTTGCTTATGTGACATCT 59.791 34.615 0.00 0.00 0.00 2.90
125 126 7.392953 TCACCATTTTTGCTTATGTGACATCTA 59.607 33.333 0.00 0.00 0.00 1.98
126 127 8.192774 CACCATTTTTGCTTATGTGACATCTAT 58.807 33.333 0.00 0.00 0.00 1.98
127 128 8.192774 ACCATTTTTGCTTATGTGACATCTATG 58.807 33.333 0.00 0.00 0.00 2.23
128 129 8.192774 CCATTTTTGCTTATGTGACATCTATGT 58.807 33.333 0.00 0.00 45.16 2.29
129 130 9.577110 CATTTTTGCTTATGTGACATCTATGTT 57.423 29.630 0.00 0.00 41.95 2.71
132 133 9.448438 TTTTGCTTATGTGACATCTATGTTACT 57.552 29.630 16.14 7.15 44.65 2.24
134 135 9.529325 TTGCTTATGTGACATCTATGTTACTAC 57.471 33.333 16.14 6.65 44.65 2.73
135 136 8.141909 TGCTTATGTGACATCTATGTTACTACC 58.858 37.037 16.14 4.63 44.65 3.18
136 137 8.361139 GCTTATGTGACATCTATGTTACTACCT 58.639 37.037 16.14 4.74 44.65 3.08
140 141 8.762481 TGTGACATCTATGTTACTACCTATGT 57.238 34.615 16.14 0.00 44.65 2.29
141 142 9.197306 TGTGACATCTATGTTACTACCTATGTT 57.803 33.333 16.14 0.00 44.65 2.71
147 148 8.930846 TCTATGTTACTACCTATGTTACTCCC 57.069 38.462 0.00 0.00 0.00 4.30
148 149 8.505246 TCTATGTTACTACCTATGTTACTCCCA 58.495 37.037 0.00 0.00 0.00 4.37
149 150 6.780457 TGTTACTACCTATGTTACTCCCAC 57.220 41.667 0.00 0.00 0.00 4.61
150 151 6.496743 TGTTACTACCTATGTTACTCCCACT 58.503 40.000 0.00 0.00 0.00 4.00
151 152 7.642186 TGTTACTACCTATGTTACTCCCACTA 58.358 38.462 0.00 0.00 0.00 2.74
152 153 8.284435 TGTTACTACCTATGTTACTCCCACTAT 58.716 37.037 0.00 0.00 0.00 2.12
153 154 8.574737 GTTACTACCTATGTTACTCCCACTATG 58.425 40.741 0.00 0.00 0.00 2.23
154 155 6.919158 ACTACCTATGTTACTCCCACTATGA 58.081 40.000 0.00 0.00 0.00 2.15
155 156 6.776603 ACTACCTATGTTACTCCCACTATGAC 59.223 42.308 0.00 0.00 0.00 3.06
156 157 4.900054 ACCTATGTTACTCCCACTATGACC 59.100 45.833 0.00 0.00 0.00 4.02
157 158 4.899457 CCTATGTTACTCCCACTATGACCA 59.101 45.833 0.00 0.00 0.00 4.02
158 159 5.011125 CCTATGTTACTCCCACTATGACCAG 59.989 48.000 0.00 0.00 0.00 4.00
159 160 2.500098 TGTTACTCCCACTATGACCAGC 59.500 50.000 0.00 0.00 0.00 4.85
160 161 1.789523 TACTCCCACTATGACCAGCC 58.210 55.000 0.00 0.00 0.00 4.85
161 162 0.043334 ACTCCCACTATGACCAGCCT 59.957 55.000 0.00 0.00 0.00 4.58
162 163 0.755686 CTCCCACTATGACCAGCCTC 59.244 60.000 0.00 0.00 0.00 4.70
163 164 0.042581 TCCCACTATGACCAGCCTCA 59.957 55.000 0.00 0.00 0.00 3.86
164 165 0.911769 CCCACTATGACCAGCCTCAA 59.088 55.000 0.00 0.00 0.00 3.02
165 166 1.134280 CCCACTATGACCAGCCTCAAG 60.134 57.143 0.00 0.00 0.00 3.02
166 167 1.833630 CCACTATGACCAGCCTCAAGA 59.166 52.381 0.00 0.00 0.00 3.02
167 168 2.158986 CCACTATGACCAGCCTCAAGAG 60.159 54.545 0.00 0.00 0.00 2.85
176 177 2.123982 CCTCAAGAGGCATGGGGC 60.124 66.667 2.68 0.00 42.44 5.80
202 203 4.530857 GTGGAGGCGACATCGGGG 62.531 72.222 3.08 0.00 40.23 5.73
236 237 2.107750 CAGTGCGCGATGGAGGAT 59.892 61.111 12.10 0.00 0.00 3.24
243 244 1.738346 CGCGATGGAGGATCTGGTGA 61.738 60.000 0.00 0.00 33.73 4.02
272 273 1.566018 GGTAGTTGCACACGTCCTGC 61.566 60.000 7.65 7.65 35.03 4.85
290 291 1.147824 CAGGAGGGTAGCCTGCATG 59.852 63.158 30.84 21.66 45.66 4.06
293 294 1.153086 GAGGGTAGCCTGCATGTGG 60.153 63.158 20.52 0.00 0.00 4.17
302 303 0.974010 CCTGCATGTGGGCCTTTGAT 60.974 55.000 4.53 0.00 0.00 2.57
304 305 2.101783 CTGCATGTGGGCCTTTGATTA 58.898 47.619 4.53 0.00 0.00 1.75
334 335 4.068599 TCACGTGAAAGCATAAATCCACA 58.931 39.130 17.62 0.00 0.00 4.17
335 336 4.517075 TCACGTGAAAGCATAAATCCACAA 59.483 37.500 17.62 0.00 0.00 3.33
350 351 4.650972 TCCACAATACCAAGTTAGCCTT 57.349 40.909 0.00 0.00 0.00 4.35
361 362 4.809673 CAAGTTAGCCTTGGACCAAATTC 58.190 43.478 8.59 0.38 45.70 2.17
362 363 3.431415 AGTTAGCCTTGGACCAAATTCC 58.569 45.455 8.59 0.00 36.03 3.01
372 373 2.888414 GGACCAAATTCCGAGGAAAACA 59.112 45.455 8.79 0.00 37.69 2.83
376 377 6.020971 ACCAAATTCCGAGGAAAACAATAC 57.979 37.500 8.79 0.00 37.69 1.89
378 379 6.943718 ACCAAATTCCGAGGAAAACAATACTA 59.056 34.615 8.79 0.00 37.69 1.82
381 382 6.997239 ATTCCGAGGAAAACAATACTAACC 57.003 37.500 8.79 0.00 37.69 2.85
386 387 8.102047 TCCGAGGAAAACAATACTAACCATTAA 58.898 33.333 0.00 0.00 0.00 1.40
391 392 9.511144 GGAAAACAATACTAACCATTAAATCGG 57.489 33.333 0.00 0.00 0.00 4.18
393 394 6.295039 ACAATACTAACCATTAAATCGGCG 57.705 37.500 0.00 0.00 0.00 6.46
396 397 7.042523 ACAATACTAACCATTAAATCGGCGTAC 60.043 37.037 6.85 0.00 0.00 3.67
413 414 6.692681 TCGGCGTACTACTACACATTAAATTC 59.307 38.462 6.85 0.00 0.00 2.17
414 415 6.473131 CGGCGTACTACTACACATTAAATTCA 59.527 38.462 0.00 0.00 0.00 2.57
415 416 7.009448 CGGCGTACTACTACACATTAAATTCAA 59.991 37.037 0.00 0.00 0.00 2.69
446 455 8.074370 ACCGTAAAAACTCTAGAATTTTCAAGC 58.926 33.333 11.98 3.34 0.00 4.01
447 456 8.073768 CCGTAAAAACTCTAGAATTTTCAAGCA 58.926 33.333 11.98 0.00 0.00 3.91
448 457 8.892905 CGTAAAAACTCTAGAATTTTCAAGCAC 58.107 33.333 11.98 7.45 0.00 4.40
449 458 9.730420 GTAAAAACTCTAGAATTTTCAAGCACA 57.270 29.630 11.98 0.00 0.00 4.57
450 459 8.862550 AAAAACTCTAGAATTTTCAAGCACAG 57.137 30.769 11.98 0.00 0.00 3.66
451 460 7.807977 AAACTCTAGAATTTTCAAGCACAGA 57.192 32.000 0.00 0.00 0.00 3.41
452 461 7.992754 AACTCTAGAATTTTCAAGCACAGAT 57.007 32.000 0.00 0.00 0.00 2.90
453 462 9.507329 AAACTCTAGAATTTTCAAGCACAGATA 57.493 29.630 0.00 0.00 0.00 1.98
454 463 9.678260 AACTCTAGAATTTTCAAGCACAGATAT 57.322 29.630 0.00 0.00 0.00 1.63
455 464 9.678260 ACTCTAGAATTTTCAAGCACAGATATT 57.322 29.630 0.00 0.00 0.00 1.28
460 469 9.985730 AGAATTTTCAAGCACAGATATTTCAAA 57.014 25.926 0.00 0.00 0.00 2.69
525 534 7.959175 AGCCATGACTAAAATGCAATATGAAT 58.041 30.769 0.00 0.00 0.00 2.57
526 535 8.086522 AGCCATGACTAAAATGCAATATGAATC 58.913 33.333 0.00 0.00 0.00 2.52
528 537 8.361889 CCATGACTAAAATGCAATATGAATCCA 58.638 33.333 0.00 0.00 0.00 3.41
529 538 9.923143 CATGACTAAAATGCAATATGAATCCAT 57.077 29.630 0.00 0.00 36.81 3.41
538 547 6.514947 TGCAATATGAATCCATAAAGCCAAC 58.485 36.000 0.00 0.00 38.62 3.77
546 555 4.209307 TCCATAAAGCCAACGACATACA 57.791 40.909 0.00 0.00 0.00 2.29
551 561 6.253298 CCATAAAGCCAACGACATACATTTTG 59.747 38.462 0.00 0.00 0.00 2.44
558 568 5.116983 CCAACGACATACATTTTGAAACAGC 59.883 40.000 0.00 0.00 0.00 4.40
562 572 6.205853 ACGACATACATTTTGAAACAGCCTTA 59.794 34.615 0.00 0.00 0.00 2.69
584 594 5.343307 AAAAATTTATGCAGGCCGAGATT 57.657 34.783 0.00 0.00 0.00 2.40
593 605 2.693069 CAGGCCGAGATTGATATGACC 58.307 52.381 0.00 0.00 0.00 4.02
599 611 4.153117 GCCGAGATTGATATGACCATTCAC 59.847 45.833 0.00 0.00 33.38 3.18
600 612 5.545588 CCGAGATTGATATGACCATTCACT 58.454 41.667 0.00 0.00 33.38 3.41
605 617 9.941325 GAGATTGATATGACCATTCACTAGATT 57.059 33.333 0.00 0.00 33.38 2.40
608 620 7.524717 TGATATGACCATTCACTAGATTCGA 57.475 36.000 0.00 0.00 33.38 3.71
612 624 9.784531 ATATGACCATTCACTAGATTCGATTTT 57.215 29.630 0.00 0.00 33.38 1.82
614 626 7.331026 TGACCATTCACTAGATTCGATTTTCT 58.669 34.615 0.00 0.00 0.00 2.52
616 628 6.540189 ACCATTCACTAGATTCGATTTTCTGG 59.460 38.462 0.00 0.00 0.00 3.86
618 630 4.442706 TCACTAGATTCGATTTTCTGGCC 58.557 43.478 0.00 0.00 0.00 5.36
622 634 0.734889 ATTCGATTTTCTGGCCGCAG 59.265 50.000 0.00 0.00 0.00 5.18
625 637 1.425428 GATTTTCTGGCCGCAGACG 59.575 57.895 0.00 0.00 39.67 4.18
636 648 1.797143 CGCAGACGCCGTAAACGTA 60.797 57.895 0.00 0.00 45.24 3.57
639 651 1.194495 CAGACGCCGTAAACGTATCC 58.806 55.000 0.00 0.00 45.24 2.59
640 652 0.248215 AGACGCCGTAAACGTATCCG 60.248 55.000 0.00 1.92 45.24 4.18
643 655 1.202290 ACGCCGTAAACGTATCCGAAT 60.202 47.619 1.41 0.00 43.02 3.34
644 656 1.854126 CGCCGTAAACGTATCCGAATT 59.146 47.619 1.41 0.00 37.74 2.17
649 661 5.387752 GCCGTAAACGTATCCGAATTGATAC 60.388 44.000 1.41 6.05 42.33 2.24
664 676 7.254692 CCGAATTGATACGACAACTCTACTAGA 60.255 40.741 0.00 0.00 32.50 2.43
666 678 6.922247 TTGATACGACAACTCTACTAGAGG 57.078 41.667 16.10 3.53 46.45 3.69
667 679 4.815308 TGATACGACAACTCTACTAGAGGC 59.185 45.833 16.10 3.63 46.45 4.70
673 701 1.096416 ACTCTACTAGAGGCGCACAC 58.904 55.000 10.83 0.00 46.45 3.82
675 703 1.064803 CTCTACTAGAGGCGCACACAG 59.935 57.143 10.83 2.97 38.67 3.66
684 712 1.273887 GCGCACACAGATATCACGC 59.726 57.895 0.30 6.51 37.93 5.34
708 737 6.728200 CCGTGTAGACAACGGTATCTTTATA 58.272 40.000 6.83 0.00 41.62 0.98
801 853 8.244113 TGTATATAAGATGGATCGCAACTACTG 58.756 37.037 0.00 0.00 0.00 2.74
908 960 0.539901 ATACGGTCCCCATCTCTCCG 60.540 60.000 0.00 0.00 45.53 4.63
948 1000 1.212751 GGCTTTTACTGCGCCCTTG 59.787 57.895 4.18 0.00 37.86 3.61
959 1011 1.007387 CGCCCTTGGAGCAAACAAC 60.007 57.895 0.00 0.00 0.00 3.32
961 1013 1.398958 GCCCTTGGAGCAAACAACCA 61.399 55.000 0.00 0.00 0.00 3.67
962 1014 0.389025 CCCTTGGAGCAAACAACCAC 59.611 55.000 0.00 0.00 33.20 4.16
963 1015 1.110442 CCTTGGAGCAAACAACCACA 58.890 50.000 0.00 0.00 33.20 4.17
966 1024 2.957491 TGGAGCAAACAACCACAAAG 57.043 45.000 0.00 0.00 0.00 2.77
1017 1077 2.616458 AATGGCGGAGGGGAAGCTT 61.616 57.895 0.00 0.00 0.00 3.74
1018 1078 2.155197 AATGGCGGAGGGGAAGCTTT 62.155 55.000 0.00 0.00 0.00 3.51
1212 1275 3.842923 CTCTCCGCCTCGCCATGT 61.843 66.667 0.00 0.00 0.00 3.21
1243 1306 2.364973 TCGGCCTGCCCATCTACA 60.365 61.111 0.00 0.00 0.00 2.74
1252 1315 1.447217 CCCATCTACATGCTCCGCA 59.553 57.895 0.00 0.00 44.86 5.69
1301 1364 2.045561 TGCTTAGAGTAGAGCGAGCT 57.954 50.000 0.00 0.00 41.75 4.09
1313 1376 7.817962 AGAGTAGAGCGAGCTTAATTTTTACAA 59.182 33.333 0.00 0.00 0.00 2.41
1331 1394 4.032960 ACAATCCAACTGATTACTGGCA 57.967 40.909 0.00 0.00 41.85 4.92
1344 1407 4.740922 TGGCACAGCGATTGGAAT 57.259 50.000 0.00 0.00 0.00 3.01
1345 1408 2.959967 TGGCACAGCGATTGGAATT 58.040 47.368 0.00 0.00 0.00 2.17
1370 1439 4.551702 GGGAATTATTGCCCAAGTTGTT 57.448 40.909 3.99 0.00 44.07 2.83
1375 1444 6.071616 GGAATTATTGCCCAAGTTGTTGTAGA 60.072 38.462 1.45 0.00 30.95 2.59
1388 1457 7.286215 AGTTGTTGTAGAGACTAGCACTTTA 57.714 36.000 0.00 0.00 0.00 1.85
1389 1458 7.723324 AGTTGTTGTAGAGACTAGCACTTTAA 58.277 34.615 0.00 0.00 0.00 1.52
1390 1459 8.368668 AGTTGTTGTAGAGACTAGCACTTTAAT 58.631 33.333 0.00 0.00 0.00 1.40
1392 1461 9.856488 TTGTTGTAGAGACTAGCACTTTAATAG 57.144 33.333 0.00 0.00 0.00 1.73
1393 1462 9.021807 TGTTGTAGAGACTAGCACTTTAATAGT 57.978 33.333 0.00 0.00 37.68 2.12
1396 1465 9.902684 TGTAGAGACTAGCACTTTAATAGTACT 57.097 33.333 0.00 0.00 34.56 2.73
1399 1468 9.116067 AGAGACTAGCACTTTAATAGTACTGAG 57.884 37.037 5.39 0.00 34.56 3.35
1401 1470 9.902684 AGACTAGCACTTTAATAGTACTGAGTA 57.097 33.333 5.39 0.00 34.56 2.59
1417 1486 8.517878 AGTACTGAGTAGTTAAGTTTGCGATTA 58.482 33.333 0.00 0.00 38.36 1.75
1419 1488 7.376615 ACTGAGTAGTTAAGTTTGCGATTAGT 58.623 34.615 0.00 0.00 31.66 2.24
1440 1513 6.803154 AGTTTCTGTGGTTAATTACTGCTC 57.197 37.500 0.00 0.00 0.00 4.26
1443 1516 5.483685 TCTGTGGTTAATTACTGCTCTGT 57.516 39.130 0.00 0.00 0.00 3.41
1566 1639 5.248477 TCCTCTTAGCTAACTTGGATTGTGT 59.752 40.000 0.86 0.00 0.00 3.72
1569 1642 7.278868 CCTCTTAGCTAACTTGGATTGTGTTAG 59.721 40.741 0.86 0.00 43.31 2.34
1610 1689 7.116075 TGTTATTACTGTTCCATGGTAAGCAT 58.884 34.615 12.58 6.62 0.00 3.79
1689 1771 4.438797 CGTGTTTAATTATGCTGCTGATGC 59.561 41.667 0.00 0.00 40.20 3.91
1789 1875 9.513906 TGGTTTTTGTTGATTATAGTCATCTGA 57.486 29.630 0.00 0.00 0.00 3.27
1988 2075 9.927668 TTCTGGAAAAGCAAAGGAATATTTTAG 57.072 29.630 0.00 0.00 0.00 1.85
2010 2097 9.541143 TTTAGTTTTTGAATAAGAAGCAAAGGG 57.459 29.630 0.00 0.00 33.60 3.95
2203 2290 4.473196 TGTATTCTCTTTGACCATGCCCTA 59.527 41.667 0.00 0.00 0.00 3.53
2216 2303 3.589988 CATGCCCTATCTCGATACAACC 58.410 50.000 0.00 0.00 0.00 3.77
2233 2320 1.935933 ACCCGACGTTATGATCAAGC 58.064 50.000 0.00 0.00 0.00 4.01
2283 2370 2.307309 GCGCGTGAACTGTGTGCTA 61.307 57.895 8.43 0.00 36.26 3.49
2284 2371 1.827315 GCGCGTGAACTGTGTGCTAA 61.827 55.000 8.43 0.00 36.26 3.09
2325 2412 5.695851 AAAACTGTGCTTCTATGGACAAG 57.304 39.130 0.00 0.00 37.80 3.16
2358 2542 6.370994 GTGCAATCTGATCCCAATACATCTAG 59.629 42.308 0.00 0.00 0.00 2.43
2420 2605 7.447238 GGTCATATGGCTACCTTTTTGCTTATA 59.553 37.037 7.36 0.00 0.00 0.98
2437 2622 7.884816 TGCTTATATTACCTAAAGCTAAGCG 57.115 36.000 7.35 0.00 43.69 4.68
2454 2639 7.241376 AGCTAAGCGTACACAATACATTTTTC 58.759 34.615 0.00 0.00 0.00 2.29
2457 2642 6.554334 AGCGTACACAATACATTTTTCTGT 57.446 33.333 0.00 0.00 0.00 3.41
2458 2643 6.966021 AGCGTACACAATACATTTTTCTGTT 58.034 32.000 0.00 0.00 0.00 3.16
2459 2644 7.075741 AGCGTACACAATACATTTTTCTGTTC 58.924 34.615 0.00 0.00 0.00 3.18
2595 2780 7.421530 TCTTAATTCTGTCACTAACTGCAAC 57.578 36.000 0.00 0.00 0.00 4.17
2604 2789 7.066404 TCTGTCACTAACTGCAACATGTTTTTA 59.934 33.333 8.77 3.80 0.00 1.52
2610 2795 9.762933 ACTAACTGCAACATGTTTTTATTTCAT 57.237 25.926 8.77 0.00 0.00 2.57
2754 2939 0.035630 AGTGCCCTGTCTGATTGAGC 60.036 55.000 0.00 0.00 0.00 4.26
2764 2949 4.256110 TGTCTGATTGAGCAGTAACCATG 58.744 43.478 0.00 0.00 37.20 3.66
2768 2953 3.054875 TGATTGAGCAGTAACCATGAGCT 60.055 43.478 0.00 0.00 38.43 4.09
2781 2966 5.294734 ACCATGAGCTGTTTTCCAATTTT 57.705 34.783 0.00 0.00 0.00 1.82
2849 3034 7.327214 TGTCATAATTCACTATACTGTGCACA 58.673 34.615 20.37 20.37 37.81 4.57
2873 3058 5.759506 TTTTGTTGCATTCGAACCTTCTA 57.240 34.783 0.00 0.00 0.00 2.10
2972 3183 7.755591 TCACTATCATTCACTTGAAATCTTGC 58.244 34.615 0.00 0.00 37.61 4.01
3043 3254 2.633488 AGCTCTCAACCTTATTTCGGC 58.367 47.619 0.00 0.00 0.00 5.54
3134 3345 8.028938 GTGCTTGATATTCTTGTGGTTATTGTT 58.971 33.333 0.00 0.00 0.00 2.83
3139 3350 9.241919 TGATATTCTTGTGGTTATTGTTGACAT 57.758 29.630 0.00 0.00 0.00 3.06
3179 3390 8.058667 TCCAAATACTCTCTAATGTCGTAACA 57.941 34.615 0.00 0.00 40.38 2.41
3180 3391 7.972277 TCCAAATACTCTCTAATGTCGTAACAC 59.028 37.037 0.00 0.00 38.48 3.32
3182 3393 9.355215 CAAATACTCTCTAATGTCGTAACACTT 57.645 33.333 0.00 0.00 38.48 3.16
3183 3394 8.912787 AATACTCTCTAATGTCGTAACACTTG 57.087 34.615 0.00 0.00 38.48 3.16
3184 3395 6.328641 ACTCTCTAATGTCGTAACACTTGT 57.671 37.500 0.00 0.00 38.48 3.16
3186 3397 7.879070 ACTCTCTAATGTCGTAACACTTGTAA 58.121 34.615 0.00 0.00 38.48 2.41
3187 3398 8.521176 ACTCTCTAATGTCGTAACACTTGTAAT 58.479 33.333 0.00 0.00 38.48 1.89
3188 3399 8.683550 TCTCTAATGTCGTAACACTTGTAATG 57.316 34.615 0.00 0.00 38.48 1.90
3190 3401 8.456904 TCTAATGTCGTAACACTTGTAATGTC 57.543 34.615 0.00 0.00 38.48 3.06
3192 3403 7.724305 AATGTCGTAACACTTGTAATGTCTT 57.276 32.000 0.00 0.00 38.48 3.01
3193 3404 8.821147 AATGTCGTAACACTTGTAATGTCTTA 57.179 30.769 0.00 0.00 38.48 2.10
3194 3405 8.821147 ATGTCGTAACACTTGTAATGTCTTAA 57.179 30.769 0.00 0.00 38.48 1.85
3195 3406 8.064447 TGTCGTAACACTTGTAATGTCTTAAC 57.936 34.615 0.00 0.00 0.00 2.01
3196 3407 7.705752 TGTCGTAACACTTGTAATGTCTTAACA 59.294 33.333 0.00 0.00 40.38 2.41
3197 3408 8.000435 GTCGTAACACTTGTAATGTCTTAACAC 59.000 37.037 0.00 0.00 38.48 3.32
3199 3410 8.545420 CGTAACACTTGTAATGTCTTAACACTT 58.455 33.333 0.00 0.00 38.48 3.16
3280 3540 0.251297 CTGCCATTGTTGGACCAGGA 60.251 55.000 0.00 0.00 46.92 3.86
3313 3573 5.244626 GGGCAAACCTATTGATATTGCTGAT 59.755 40.000 8.47 0.00 44.30 2.90
3363 3623 6.260936 GTGGTAATGAATGATTGGAGTGGTAG 59.739 42.308 0.00 0.00 0.00 3.18
3370 3630 2.963101 TGATTGGAGTGGTAGGTATCCG 59.037 50.000 0.00 0.00 34.39 4.18
4015 4277 3.654414 TGCCTCGTTGTTTTGTTTTTGT 58.346 36.364 0.00 0.00 0.00 2.83
4110 4372 3.482156 AGTGAAGCATCAGTTGTCACT 57.518 42.857 0.00 0.00 35.67 3.41
4138 4400 8.246180 AGACCAATTTCAAACATATGTAAGCAG 58.754 33.333 9.21 0.00 0.00 4.24
4253 4515 3.172339 ACTCAATCTGCTGGTCTTCTCT 58.828 45.455 0.00 0.00 0.00 3.10
4268 4530 7.267857 TGGTCTTCTCTGTGTGTATATTCATG 58.732 38.462 0.00 0.00 0.00 3.07
4273 4535 7.654022 TCTCTGTGTGTATATTCATGGTGTA 57.346 36.000 0.00 0.00 0.00 2.90
4386 4650 4.034410 TGTAACCCATGCATACTCCTGTA 58.966 43.478 0.00 0.00 0.00 2.74
4467 4731 0.842635 GCAATCTGAGACCAGGGGAT 59.157 55.000 0.00 0.00 40.76 3.85
4476 4740 1.922447 AGACCAGGGGATATGTTTGCA 59.078 47.619 0.00 0.00 0.00 4.08
4544 4808 8.978874 ATATGAGTTACAAACATGCCAATCTA 57.021 30.769 0.00 0.00 0.00 1.98
4550 4814 8.028938 AGTTACAAACATGCCAATCTACAAATC 58.971 33.333 0.00 0.00 0.00 2.17
4553 4817 6.015180 ACAAACATGCCAATCTACAAATCACT 60.015 34.615 0.00 0.00 0.00 3.41
4563 4827 7.334171 CCAATCTACAAATCACTGTACACATCA 59.666 37.037 0.00 0.00 0.00 3.07
4572 4836 5.610398 TCACTGTACACATCAACACTGAAT 58.390 37.500 0.00 0.00 34.49 2.57
4658 4922 3.388350 AGAAGGAGATATCGGTTGGGAAC 59.612 47.826 0.00 0.00 0.00 3.62
4685 4949 1.339055 CGCAAGTTCCTCCAAGATGGA 60.339 52.381 0.00 0.00 45.98 3.41
4720 4984 1.283793 CAGCCTGTTGCAAGGTTCG 59.716 57.895 0.00 0.00 44.83 3.95
4728 4994 1.002792 GTTGCAAGGTTCGGTGAACTC 60.003 52.381 0.00 0.94 41.70 3.01
4729 4995 0.179234 TGCAAGGTTCGGTGAACTCA 59.821 50.000 9.32 1.47 41.70 3.41
4730 4996 1.202758 TGCAAGGTTCGGTGAACTCAT 60.203 47.619 9.32 0.00 41.70 2.90
4736 5002 4.065789 AGGTTCGGTGAACTCATCTTTTC 58.934 43.478 9.32 0.00 41.70 2.29
4737 5003 4.065789 GGTTCGGTGAACTCATCTTTTCT 58.934 43.478 9.32 0.00 41.70 2.52
4740 5006 5.673337 TCGGTGAACTCATCTTTTCTTTG 57.327 39.130 0.00 0.00 0.00 2.77
4742 5008 5.588648 TCGGTGAACTCATCTTTTCTTTGTT 59.411 36.000 0.00 0.00 0.00 2.83
4743 5009 5.682862 CGGTGAACTCATCTTTTCTTTGTTG 59.317 40.000 0.00 0.00 0.00 3.33
4750 5019 6.483307 ACTCATCTTTTCTTTGTTGTCATCGA 59.517 34.615 0.00 0.00 0.00 3.59
4773 5042 8.937884 TCGAACATTATCGGTCTTGAAAATTTA 58.062 29.630 0.00 0.00 42.92 1.40
4918 5187 1.078214 TCGCTTCCATGAGCCAAGG 60.078 57.895 0.00 0.00 39.51 3.61
4956 5229 3.712016 TGGAATAAAGCAGGCAGTGTA 57.288 42.857 0.00 0.00 0.00 2.90
5160 5460 2.281345 CGCAGGAGGATGGGATGC 60.281 66.667 0.00 0.00 35.25 3.91
5172 5472 0.035152 TGGGATGCTGCGATTGTTCT 60.035 50.000 0.00 0.00 0.00 3.01
5198 5498 3.552132 AAATTTTGTTGGGTTTCGGCT 57.448 38.095 0.00 0.00 0.00 5.52
5199 5499 2.524569 ATTTTGTTGGGTTTCGGCTG 57.475 45.000 0.00 0.00 0.00 4.85
5215 5515 1.502163 GCTGTGAGCAAGAGCAACGT 61.502 55.000 3.99 0.00 45.49 3.99
5216 5516 0.940126 CTGTGAGCAAGAGCAACGTT 59.060 50.000 0.00 0.00 45.49 3.99
5217 5517 0.937304 TGTGAGCAAGAGCAACGTTC 59.063 50.000 0.00 0.00 45.49 3.95
5218 5518 1.221414 GTGAGCAAGAGCAACGTTCT 58.779 50.000 0.00 0.00 45.49 3.01
5219 5519 1.070309 GTGAGCAAGAGCAACGTTCTG 60.070 52.381 0.00 0.00 45.49 3.02
5220 5520 1.202521 TGAGCAAGAGCAACGTTCTGA 60.203 47.619 0.00 0.00 45.49 3.27
5221 5521 1.867233 GAGCAAGAGCAACGTTCTGAA 59.133 47.619 0.00 0.00 45.49 3.02
5262 5569 1.475213 GCTAACTATCACCAGGGCCAC 60.475 57.143 6.18 0.00 0.00 5.01
5264 5571 1.910580 AACTATCACCAGGGCCACGG 61.911 60.000 6.18 8.62 0.00 4.94
5292 5600 0.894141 TGTTAACATGCATGGGCCAC 59.106 50.000 29.41 19.35 40.13 5.01
5310 5618 5.230182 GGCCACTTCTTAACAAAAATCAGG 58.770 41.667 0.00 0.00 0.00 3.86
5355 5663 0.758734 TGTCAGCTGCTTACACCAGT 59.241 50.000 12.35 0.00 32.93 4.00
5356 5664 1.140852 TGTCAGCTGCTTACACCAGTT 59.859 47.619 12.35 0.00 32.93 3.16
5357 5665 1.532868 GTCAGCTGCTTACACCAGTTG 59.467 52.381 9.47 0.00 41.21 3.16
5457 5774 6.709018 AACAAAAGAAAGAAAGAATCCGGA 57.291 33.333 6.61 6.61 0.00 5.14
5459 5776 6.914259 ACAAAAGAAAGAAAGAATCCGGATC 58.086 36.000 19.43 11.42 0.00 3.36
5460 5777 6.071896 ACAAAAGAAAGAAAGAATCCGGATCC 60.072 38.462 19.43 4.43 0.00 3.36
5474 5791 4.995058 ATCCGGGTGGGTGGGTGT 62.995 66.667 0.00 0.00 37.00 4.16
5484 5801 0.684805 GGGTGGGTGTGTGGTTTGAA 60.685 55.000 0.00 0.00 0.00 2.69
5788 6105 2.751166 AGGAGACGTTGTCCATCTTG 57.249 50.000 17.55 0.00 36.43 3.02
5793 6110 2.132762 GACGTTGTCCATCTTGACGTT 58.867 47.619 1.27 0.00 45.66 3.99
5820 6137 4.115199 GAAGCGGGTGGCCCTGAT 62.115 66.667 0.00 0.00 42.67 2.90
5854 6171 0.591741 CCTCGTACGACTTGATCCGC 60.592 60.000 15.28 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.892723 CCAATGCATAATGAGTCTACAAAGTAA 58.107 33.333 0.00 0.00 0.00 2.24
4 5 8.264347 TCCAATGCATAATGAGTCTACAAAGTA 58.736 33.333 0.00 0.00 0.00 2.24
5 6 7.112122 TCCAATGCATAATGAGTCTACAAAGT 58.888 34.615 0.00 0.00 0.00 2.66
7 8 7.936496 TTCCAATGCATAATGAGTCTACAAA 57.064 32.000 0.00 0.00 0.00 2.83
8 9 7.148086 GGTTTCCAATGCATAATGAGTCTACAA 60.148 37.037 0.00 0.00 0.00 2.41
9 10 6.318648 GGTTTCCAATGCATAATGAGTCTACA 59.681 38.462 0.00 0.00 0.00 2.74
10 11 6.511767 CGGTTTCCAATGCATAATGAGTCTAC 60.512 42.308 0.00 0.00 0.00 2.59
11 12 5.527214 CGGTTTCCAATGCATAATGAGTCTA 59.473 40.000 0.00 0.00 0.00 2.59
12 13 4.336433 CGGTTTCCAATGCATAATGAGTCT 59.664 41.667 0.00 0.00 0.00 3.24
13 14 4.601019 CGGTTTCCAATGCATAATGAGTC 58.399 43.478 0.00 0.00 0.00 3.36
14 15 3.181487 GCGGTTTCCAATGCATAATGAGT 60.181 43.478 0.00 0.00 0.00 3.41
15 16 3.067180 AGCGGTTTCCAATGCATAATGAG 59.933 43.478 0.00 0.00 0.00 2.90
16 17 3.023119 AGCGGTTTCCAATGCATAATGA 58.977 40.909 0.00 0.00 0.00 2.57
17 18 3.441496 AGCGGTTTCCAATGCATAATG 57.559 42.857 0.00 0.00 0.00 1.90
18 19 4.584325 ACATAGCGGTTTCCAATGCATAAT 59.416 37.500 0.00 0.00 0.00 1.28
19 20 3.951037 ACATAGCGGTTTCCAATGCATAA 59.049 39.130 0.00 0.00 0.00 1.90
20 21 3.314913 CACATAGCGGTTTCCAATGCATA 59.685 43.478 0.00 0.00 0.00 3.14
21 22 2.099592 CACATAGCGGTTTCCAATGCAT 59.900 45.455 0.00 0.00 0.00 3.96
22 23 1.472082 CACATAGCGGTTTCCAATGCA 59.528 47.619 0.00 0.00 0.00 3.96
23 24 1.742831 TCACATAGCGGTTTCCAATGC 59.257 47.619 0.00 0.00 0.00 3.56
24 25 3.243168 CCATCACATAGCGGTTTCCAATG 60.243 47.826 0.00 0.00 0.00 2.82
25 26 2.951642 CCATCACATAGCGGTTTCCAAT 59.048 45.455 0.00 0.00 0.00 3.16
26 27 2.290641 ACCATCACATAGCGGTTTCCAA 60.291 45.455 0.00 0.00 0.00 3.53
27 28 1.280710 ACCATCACATAGCGGTTTCCA 59.719 47.619 0.00 0.00 0.00 3.53
28 29 2.038387 ACCATCACATAGCGGTTTCC 57.962 50.000 0.00 0.00 0.00 3.13
29 30 3.936453 TGTTACCATCACATAGCGGTTTC 59.064 43.478 0.00 0.00 32.81 2.78
30 31 3.945346 TGTTACCATCACATAGCGGTTT 58.055 40.909 0.00 0.00 32.81 3.27
31 32 3.620427 TGTTACCATCACATAGCGGTT 57.380 42.857 0.00 0.00 32.81 4.44
32 33 3.838244 ATGTTACCATCACATAGCGGT 57.162 42.857 0.00 0.00 32.88 5.68
33 34 7.549134 ACATAATATGTTACCATCACATAGCGG 59.451 37.037 0.00 0.00 41.63 5.52
34 35 8.479313 ACATAATATGTTACCATCACATAGCG 57.521 34.615 0.00 0.00 41.63 4.26
53 54 8.371699 GGAGAGAGGCAAATAGAGTAACATAAT 58.628 37.037 0.00 0.00 0.00 1.28
54 55 7.565398 AGGAGAGAGGCAAATAGAGTAACATAA 59.435 37.037 0.00 0.00 0.00 1.90
55 56 7.069986 AGGAGAGAGGCAAATAGAGTAACATA 58.930 38.462 0.00 0.00 0.00 2.29
56 57 5.902431 AGGAGAGAGGCAAATAGAGTAACAT 59.098 40.000 0.00 0.00 0.00 2.71
57 58 5.273208 AGGAGAGAGGCAAATAGAGTAACA 58.727 41.667 0.00 0.00 0.00 2.41
58 59 5.361285 TGAGGAGAGAGGCAAATAGAGTAAC 59.639 44.000 0.00 0.00 0.00 2.50
59 60 5.519808 TGAGGAGAGAGGCAAATAGAGTAA 58.480 41.667 0.00 0.00 0.00 2.24
60 61 5.130705 TGAGGAGAGAGGCAAATAGAGTA 57.869 43.478 0.00 0.00 0.00 2.59
61 62 3.987745 TGAGGAGAGAGGCAAATAGAGT 58.012 45.455 0.00 0.00 0.00 3.24
62 63 5.549742 AATGAGGAGAGAGGCAAATAGAG 57.450 43.478 0.00 0.00 0.00 2.43
63 64 6.613271 AGTTAATGAGGAGAGAGGCAAATAGA 59.387 38.462 0.00 0.00 0.00 1.98
64 65 6.825610 AGTTAATGAGGAGAGAGGCAAATAG 58.174 40.000 0.00 0.00 0.00 1.73
65 66 6.814954 AGTTAATGAGGAGAGAGGCAAATA 57.185 37.500 0.00 0.00 0.00 1.40
66 67 5.707066 AGTTAATGAGGAGAGAGGCAAAT 57.293 39.130 0.00 0.00 0.00 2.32
67 68 5.721960 AGTAGTTAATGAGGAGAGAGGCAAA 59.278 40.000 0.00 0.00 0.00 3.68
68 69 5.273208 AGTAGTTAATGAGGAGAGAGGCAA 58.727 41.667 0.00 0.00 0.00 4.52
69 70 4.873010 AGTAGTTAATGAGGAGAGAGGCA 58.127 43.478 0.00 0.00 0.00 4.75
70 71 5.596845 CAAGTAGTTAATGAGGAGAGAGGC 58.403 45.833 0.00 0.00 0.00 4.70
71 72 5.452636 GGCAAGTAGTTAATGAGGAGAGAGG 60.453 48.000 0.00 0.00 0.00 3.69
72 73 5.127845 TGGCAAGTAGTTAATGAGGAGAGAG 59.872 44.000 0.00 0.00 0.00 3.20
73 74 5.023452 TGGCAAGTAGTTAATGAGGAGAGA 58.977 41.667 0.00 0.00 0.00 3.10
74 75 5.112686 GTGGCAAGTAGTTAATGAGGAGAG 58.887 45.833 0.00 0.00 0.00 3.20
75 76 4.530553 TGTGGCAAGTAGTTAATGAGGAGA 59.469 41.667 0.00 0.00 0.00 3.71
76 77 4.832248 TGTGGCAAGTAGTTAATGAGGAG 58.168 43.478 0.00 0.00 0.00 3.69
77 78 4.901197 TGTGGCAAGTAGTTAATGAGGA 57.099 40.909 0.00 0.00 0.00 3.71
78 79 5.065218 GTGATGTGGCAAGTAGTTAATGAGG 59.935 44.000 0.00 0.00 0.00 3.86
79 80 5.065218 GGTGATGTGGCAAGTAGTTAATGAG 59.935 44.000 0.00 0.00 0.00 2.90
80 81 4.941263 GGTGATGTGGCAAGTAGTTAATGA 59.059 41.667 0.00 0.00 0.00 2.57
81 82 4.699735 TGGTGATGTGGCAAGTAGTTAATG 59.300 41.667 0.00 0.00 0.00 1.90
82 83 4.917385 TGGTGATGTGGCAAGTAGTTAAT 58.083 39.130 0.00 0.00 0.00 1.40
83 84 4.359434 TGGTGATGTGGCAAGTAGTTAA 57.641 40.909 0.00 0.00 0.00 2.01
84 85 4.568072 ATGGTGATGTGGCAAGTAGTTA 57.432 40.909 0.00 0.00 0.00 2.24
85 86 2.949177 TGGTGATGTGGCAAGTAGTT 57.051 45.000 0.00 0.00 0.00 2.24
86 87 3.439857 AATGGTGATGTGGCAAGTAGT 57.560 42.857 0.00 0.00 0.00 2.73
87 88 4.789012 AAAATGGTGATGTGGCAAGTAG 57.211 40.909 0.00 0.00 0.00 2.57
88 89 4.798924 GCAAAAATGGTGATGTGGCAAGTA 60.799 41.667 0.00 0.00 0.00 2.24
89 90 3.731089 CAAAAATGGTGATGTGGCAAGT 58.269 40.909 0.00 0.00 0.00 3.16
90 91 2.481185 GCAAAAATGGTGATGTGGCAAG 59.519 45.455 0.00 0.00 0.00 4.01
91 92 2.104451 AGCAAAAATGGTGATGTGGCAA 59.896 40.909 0.00 0.00 0.00 4.52
92 93 1.693062 AGCAAAAATGGTGATGTGGCA 59.307 42.857 0.00 0.00 0.00 4.92
93 94 2.460757 AGCAAAAATGGTGATGTGGC 57.539 45.000 0.00 0.00 0.00 5.01
94 95 5.481105 ACATAAGCAAAAATGGTGATGTGG 58.519 37.500 9.58 0.00 39.24 4.17
95 96 6.397831 CACATAAGCAAAAATGGTGATGTG 57.602 37.500 18.78 18.78 46.34 3.21
96 97 6.158598 GTCACATAAGCAAAAATGGTGATGT 58.841 36.000 5.40 5.40 40.81 3.06
97 98 6.157904 TGTCACATAAGCAAAAATGGTGATG 58.842 36.000 4.26 4.26 35.01 3.07
98 99 6.343716 TGTCACATAAGCAAAAATGGTGAT 57.656 33.333 0.00 0.00 0.00 3.06
99 100 5.781210 TGTCACATAAGCAAAAATGGTGA 57.219 34.783 0.00 0.00 0.00 4.02
100 101 6.392354 AGATGTCACATAAGCAAAAATGGTG 58.608 36.000 0.00 0.00 0.00 4.17
101 102 6.594788 AGATGTCACATAAGCAAAAATGGT 57.405 33.333 0.00 0.00 0.00 3.55
102 103 8.192774 ACATAGATGTCACATAAGCAAAAATGG 58.807 33.333 0.00 0.00 35.87 3.16
103 104 9.577110 AACATAGATGTCACATAAGCAAAAATG 57.423 29.630 0.00 0.00 40.80 2.32
106 107 9.448438 AGTAACATAGATGTCACATAAGCAAAA 57.552 29.630 0.00 0.00 40.80 2.44
108 109 9.529325 GTAGTAACATAGATGTCACATAAGCAA 57.471 33.333 0.00 0.00 40.80 3.91
109 110 8.141909 GGTAGTAACATAGATGTCACATAAGCA 58.858 37.037 0.00 0.00 40.80 3.91
110 111 8.361139 AGGTAGTAACATAGATGTCACATAAGC 58.639 37.037 0.00 0.00 40.80 3.09
114 115 9.368416 ACATAGGTAGTAACATAGATGTCACAT 57.632 33.333 0.00 0.00 40.80 3.21
115 116 8.762481 ACATAGGTAGTAACATAGATGTCACA 57.238 34.615 0.00 0.00 40.80 3.58
121 122 9.531158 GGGAGTAACATAGGTAGTAACATAGAT 57.469 37.037 0.00 0.00 0.00 1.98
122 123 8.505246 TGGGAGTAACATAGGTAGTAACATAGA 58.495 37.037 0.00 0.00 0.00 1.98
123 124 8.574737 GTGGGAGTAACATAGGTAGTAACATAG 58.425 40.741 0.00 0.00 0.00 2.23
124 125 8.284435 AGTGGGAGTAACATAGGTAGTAACATA 58.716 37.037 0.00 0.00 0.00 2.29
125 126 7.130775 AGTGGGAGTAACATAGGTAGTAACAT 58.869 38.462 0.00 0.00 0.00 2.71
126 127 6.496743 AGTGGGAGTAACATAGGTAGTAACA 58.503 40.000 0.00 0.00 0.00 2.41
127 128 8.574737 CATAGTGGGAGTAACATAGGTAGTAAC 58.425 40.741 0.00 0.00 0.00 2.50
128 129 8.505246 TCATAGTGGGAGTAACATAGGTAGTAA 58.495 37.037 0.00 0.00 0.00 2.24
129 130 7.941238 GTCATAGTGGGAGTAACATAGGTAGTA 59.059 40.741 0.00 0.00 0.00 1.82
130 131 6.776603 GTCATAGTGGGAGTAACATAGGTAGT 59.223 42.308 0.00 0.00 0.00 2.73
131 132 6.208994 GGTCATAGTGGGAGTAACATAGGTAG 59.791 46.154 0.00 0.00 0.00 3.18
132 133 6.073314 GGTCATAGTGGGAGTAACATAGGTA 58.927 44.000 0.00 0.00 0.00 3.08
133 134 4.900054 GGTCATAGTGGGAGTAACATAGGT 59.100 45.833 0.00 0.00 0.00 3.08
134 135 4.899457 TGGTCATAGTGGGAGTAACATAGG 59.101 45.833 0.00 0.00 0.00 2.57
135 136 5.509840 GCTGGTCATAGTGGGAGTAACATAG 60.510 48.000 0.00 0.00 0.00 2.23
136 137 4.344102 GCTGGTCATAGTGGGAGTAACATA 59.656 45.833 0.00 0.00 0.00 2.29
137 138 3.134804 GCTGGTCATAGTGGGAGTAACAT 59.865 47.826 0.00 0.00 0.00 2.71
138 139 2.500098 GCTGGTCATAGTGGGAGTAACA 59.500 50.000 0.00 0.00 0.00 2.41
139 140 2.158943 GGCTGGTCATAGTGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
140 141 2.116238 GGCTGGTCATAGTGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
141 142 1.291033 AGGCTGGTCATAGTGGGAGTA 59.709 52.381 0.00 0.00 0.00 2.59
142 143 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.000 0.00 0.00 0.00 3.85
143 144 0.755686 GAGGCTGGTCATAGTGGGAG 59.244 60.000 0.00 0.00 0.00 4.30
144 145 0.042581 TGAGGCTGGTCATAGTGGGA 59.957 55.000 0.00 0.00 0.00 4.37
145 146 0.911769 TTGAGGCTGGTCATAGTGGG 59.088 55.000 0.00 0.00 0.00 4.61
146 147 1.833630 TCTTGAGGCTGGTCATAGTGG 59.166 52.381 0.00 0.00 0.00 4.00
147 148 2.158986 CCTCTTGAGGCTGGTCATAGTG 60.159 54.545 3.51 0.00 0.00 2.74
148 149 2.114616 CCTCTTGAGGCTGGTCATAGT 58.885 52.381 3.51 0.00 0.00 2.12
149 150 2.906691 CCTCTTGAGGCTGGTCATAG 57.093 55.000 3.51 0.00 0.00 2.23
159 160 2.123982 GCCCCATGCCTCTTGAGG 60.124 66.667 12.07 12.07 0.00 3.86
182 183 2.202797 CGATGTCGCCTCCACTGG 60.203 66.667 0.00 0.00 0.00 4.00
183 184 2.202797 CCGATGTCGCCTCCACTG 60.203 66.667 0.00 0.00 38.18 3.66
184 185 3.461773 CCCGATGTCGCCTCCACT 61.462 66.667 0.00 0.00 38.18 4.00
185 186 4.530857 CCCCGATGTCGCCTCCAC 62.531 72.222 0.00 0.00 38.18 4.02
194 195 1.990060 CTCTCCACCACCCCGATGT 60.990 63.158 0.00 0.00 0.00 3.06
215 216 3.381983 TCCATCGCGCACTGGAGT 61.382 61.111 20.70 0.00 36.63 3.85
226 227 0.031314 CGTCACCAGATCCTCCATCG 59.969 60.000 0.00 0.00 36.50 3.84
228 229 1.690219 GCCGTCACCAGATCCTCCAT 61.690 60.000 0.00 0.00 0.00 3.41
229 230 2.359169 GCCGTCACCAGATCCTCCA 61.359 63.158 0.00 0.00 0.00 3.86
236 237 3.691342 CCTTCGGCCGTCACCAGA 61.691 66.667 27.15 0.00 0.00 3.86
243 244 2.660802 CAACTACCCTTCGGCCGT 59.339 61.111 27.15 7.91 0.00 5.68
254 255 1.860078 GCAGGACGTGTGCAACTAC 59.140 57.895 13.38 0.00 40.86 2.73
290 291 6.313658 GTGAATTCAAATAATCAAAGGCCCAC 59.686 38.462 10.35 0.00 0.00 4.61
293 294 6.034898 CACGTGAATTCAAATAATCAAAGGCC 59.965 38.462 10.90 0.00 0.00 5.19
302 303 9.684448 TTTATGCTTTCACGTGAATTCAAATAA 57.316 25.926 30.10 22.75 33.54 1.40
304 305 8.761575 ATTTATGCTTTCACGTGAATTCAAAT 57.238 26.923 30.10 23.63 33.54 2.32
350 351 2.888414 GTTTTCCTCGGAATTTGGTCCA 59.112 45.455 0.00 0.00 37.56 4.02
359 360 5.867330 TGGTTAGTATTGTTTTCCTCGGAA 58.133 37.500 0.00 0.00 0.00 4.30
361 362 6.753107 AATGGTTAGTATTGTTTTCCTCGG 57.247 37.500 0.00 0.00 0.00 4.63
372 373 7.212274 AGTACGCCGATTTAATGGTTAGTATT 58.788 34.615 0.00 0.00 0.00 1.89
376 377 6.211515 AGTAGTACGCCGATTTAATGGTTAG 58.788 40.000 0.00 0.00 0.00 2.34
378 379 5.014808 AGTAGTACGCCGATTTAATGGTT 57.985 39.130 0.00 0.00 0.00 3.67
381 382 5.972973 TGTGTAGTAGTACGCCGATTTAATG 59.027 40.000 16.72 0.00 38.67 1.90
386 387 4.644103 AATGTGTAGTAGTACGCCGATT 57.356 40.909 16.72 9.18 38.67 3.34
390 391 7.760131 TGAATTTAATGTGTAGTAGTACGCC 57.240 36.000 16.72 4.87 38.67 5.68
420 421 8.074370 GCTTGAAAATTCTAGAGTTTTTACGGT 58.926 33.333 22.35 4.17 31.68 4.83
422 423 8.892905 GTGCTTGAAAATTCTAGAGTTTTTACG 58.107 33.333 22.35 17.65 31.68 3.18
423 424 9.730420 TGTGCTTGAAAATTCTAGAGTTTTTAC 57.270 29.630 22.35 16.72 31.68 2.01
429 438 9.678260 AATATCTGTGCTTGAAAATTCTAGAGT 57.322 29.630 8.48 0.00 32.85 3.24
434 443 9.985730 TTTGAAATATCTGTGCTTGAAAATTCT 57.014 25.926 0.00 0.00 0.00 2.40
502 511 8.361889 TGGATTCATATTGCATTTTAGTCATGG 58.638 33.333 0.00 0.00 0.00 3.66
525 534 4.209307 TGTATGTCGTTGGCTTTATGGA 57.791 40.909 0.00 0.00 0.00 3.41
526 535 5.499139 AATGTATGTCGTTGGCTTTATGG 57.501 39.130 0.00 0.00 0.00 2.74
528 537 7.151999 TCAAAATGTATGTCGTTGGCTTTAT 57.848 32.000 0.00 0.00 0.00 1.40
529 538 6.561737 TCAAAATGTATGTCGTTGGCTTTA 57.438 33.333 0.00 0.00 0.00 1.85
530 539 5.446143 TCAAAATGTATGTCGTTGGCTTT 57.554 34.783 0.00 0.00 0.00 3.51
533 542 4.979197 TGTTTCAAAATGTATGTCGTTGGC 59.021 37.500 0.00 0.00 0.00 4.52
534 543 5.116983 GCTGTTTCAAAATGTATGTCGTTGG 59.883 40.000 0.00 0.00 0.00 3.77
538 547 5.046910 AGGCTGTTTCAAAATGTATGTCG 57.953 39.130 0.00 0.00 0.00 4.35
551 561 7.624134 GCCTGCATAAATTTTTAAGGCTGTTTC 60.624 37.037 19.05 1.94 39.43 2.78
558 568 5.004922 TCGGCCTGCATAAATTTTTAAGG 57.995 39.130 0.00 0.93 0.00 2.69
562 572 5.105392 TCAATCTCGGCCTGCATAAATTTTT 60.105 36.000 0.00 0.00 0.00 1.94
584 594 7.524717 TCGAATCTAGTGAATGGTCATATCA 57.475 36.000 0.00 0.00 35.80 2.15
593 605 6.425504 GCCAGAAAATCGAATCTAGTGAATG 58.574 40.000 0.00 0.00 0.00 2.67
599 611 2.221981 GCGGCCAGAAAATCGAATCTAG 59.778 50.000 2.24 0.00 0.00 2.43
600 612 2.210116 GCGGCCAGAAAATCGAATCTA 58.790 47.619 2.24 0.00 0.00 1.98
605 617 1.295101 TCTGCGGCCAGAAAATCGA 59.705 52.632 2.24 0.00 44.79 3.59
618 630 1.135699 ATACGTTTACGGCGTCTGCG 61.136 55.000 19.21 20.92 44.95 5.18
635 647 6.387041 AGAGTTGTCGTATCAATTCGGATA 57.613 37.500 0.00 0.00 38.48 2.59
636 648 5.263968 AGAGTTGTCGTATCAATTCGGAT 57.736 39.130 0.00 0.00 38.48 4.18
639 651 7.628235 TCTAGTAGAGTTGTCGTATCAATTCG 58.372 38.462 0.00 0.00 38.48 3.34
640 652 8.071368 CCTCTAGTAGAGTTGTCGTATCAATTC 58.929 40.741 22.78 0.00 40.72 2.17
643 655 5.296283 GCCTCTAGTAGAGTTGTCGTATCAA 59.704 44.000 22.78 0.00 40.72 2.57
644 656 4.815308 GCCTCTAGTAGAGTTGTCGTATCA 59.185 45.833 22.78 0.00 40.72 2.15
649 661 1.268133 GCGCCTCTAGTAGAGTTGTCG 60.268 57.143 22.78 19.41 40.72 4.35
664 676 0.528466 CGTGATATCTGTGTGCGCCT 60.528 55.000 4.18 0.00 0.00 5.52
666 678 1.273887 GCGTGATATCTGTGTGCGC 59.726 57.895 0.00 0.00 36.75 6.09
667 679 1.811217 CGGCGTGATATCTGTGTGCG 61.811 60.000 3.98 1.07 0.00 5.34
673 701 2.032924 TGTCTACACGGCGTGATATCTG 59.967 50.000 42.65 23.96 36.96 2.90
675 703 2.768833 TGTCTACACGGCGTGATATC 57.231 50.000 42.65 27.77 36.96 1.63
708 737 7.879160 TGGTTCGTTTGGTTAAATACTACAGAT 59.121 33.333 0.00 0.00 0.00 2.90
769 809 9.554395 TTGCGATCCATCTTATATACAGAAAAA 57.446 29.630 0.00 0.00 0.00 1.94
774 814 8.462811 AGTAGTTGCGATCCATCTTATATACAG 58.537 37.037 0.00 0.00 0.00 2.74
776 819 8.244802 ACAGTAGTTGCGATCCATCTTATATAC 58.755 37.037 0.00 0.00 0.00 1.47
777 820 8.349568 ACAGTAGTTGCGATCCATCTTATATA 57.650 34.615 0.00 0.00 0.00 0.86
778 821 7.177568 AGACAGTAGTTGCGATCCATCTTATAT 59.822 37.037 0.00 0.00 0.00 0.86
801 853 6.484643 TCGTGTTAGGTATACATCCTACAGAC 59.515 42.308 5.01 0.00 37.29 3.51
809 861 6.039047 TGTCCTTCTCGTGTTAGGTATACATC 59.961 42.308 5.01 0.00 0.00 3.06
908 960 3.613689 GGGATAGCGGGTCGGGTC 61.614 72.222 0.00 0.00 0.00 4.46
948 1000 1.806247 GCCTTTGTGGTTGTTTGCTCC 60.806 52.381 0.00 0.00 38.35 4.70
959 1011 2.631428 CGTCGTGTGCCTTTGTGG 59.369 61.111 0.00 0.00 39.35 4.17
961 1013 3.636043 CGCGTCGTGTGCCTTTGT 61.636 61.111 0.00 0.00 0.00 2.83
982 1040 1.023513 ATTGCCGACTTGCTCTGCTC 61.024 55.000 0.00 0.00 30.62 4.26
985 1043 1.798735 CCATTGCCGACTTGCTCTG 59.201 57.895 0.00 0.00 0.00 3.35
986 1044 2.042831 GCCATTGCCGACTTGCTCT 61.043 57.895 0.00 0.00 0.00 4.09
987 1045 2.486966 GCCATTGCCGACTTGCTC 59.513 61.111 0.00 0.00 0.00 4.26
990 1048 2.745884 TCCGCCATTGCCGACTTG 60.746 61.111 0.00 0.00 0.00 3.16
1017 1077 1.301401 CTCCAGGAACGACCGCAAA 60.301 57.895 0.00 0.00 44.74 3.68
1018 1078 2.342279 CTCCAGGAACGACCGCAA 59.658 61.111 0.00 0.00 44.74 4.85
1030 1093 3.775654 GTCCCTCGGCACCTCCAG 61.776 72.222 0.00 0.00 34.01 3.86
1212 1275 1.675219 GCCGAGTACCTGGTGGAAA 59.325 57.895 10.23 0.00 37.04 3.13
1252 1315 5.057819 CAGTAGCAATCTCAAGCAGATGAT 58.942 41.667 0.00 0.00 41.47 2.45
1261 1324 5.055144 GCATCAGATCAGTAGCAATCTCAA 58.945 41.667 0.00 0.00 29.77 3.02
1313 1376 3.614092 CTGTGCCAGTAATCAGTTGGAT 58.386 45.455 0.00 0.00 38.05 3.41
1331 1394 1.550072 CCCCAAAATTCCAATCGCTGT 59.450 47.619 0.00 0.00 0.00 4.40
1341 1404 5.109500 TGGGCAATAATTCCCCAAAATTC 57.891 39.130 0.00 0.00 45.48 2.17
1362 1431 5.533482 AGTGCTAGTCTCTACAACAACTTG 58.467 41.667 0.00 0.00 0.00 3.16
1388 1457 8.517878 TCGCAAACTTAACTACTCAGTACTATT 58.482 33.333 0.00 0.00 33.48 1.73
1389 1458 8.048534 TCGCAAACTTAACTACTCAGTACTAT 57.951 34.615 0.00 0.00 33.48 2.12
1390 1459 7.439157 TCGCAAACTTAACTACTCAGTACTA 57.561 36.000 0.00 0.00 33.48 1.82
1392 1461 7.578169 AATCGCAAACTTAACTACTCAGTAC 57.422 36.000 0.00 0.00 33.48 2.73
1393 1462 8.517878 ACTAATCGCAAACTTAACTACTCAGTA 58.482 33.333 0.00 0.00 33.48 2.74
1394 1463 7.376615 ACTAATCGCAAACTTAACTACTCAGT 58.623 34.615 0.00 0.00 36.19 3.41
1395 1464 7.813852 ACTAATCGCAAACTTAACTACTCAG 57.186 36.000 0.00 0.00 0.00 3.35
1396 1465 8.597662 AAACTAATCGCAAACTTAACTACTCA 57.402 30.769 0.00 0.00 0.00 3.41
1397 1466 8.923683 AGAAACTAATCGCAAACTTAACTACTC 58.076 33.333 0.00 0.00 0.00 2.59
1399 1468 8.493547 ACAGAAACTAATCGCAAACTTAACTAC 58.506 33.333 0.00 0.00 0.00 2.73
1401 1470 7.352739 CACAGAAACTAATCGCAAACTTAACT 58.647 34.615 0.00 0.00 0.00 2.24
1404 1473 5.761234 ACCACAGAAACTAATCGCAAACTTA 59.239 36.000 0.00 0.00 0.00 2.24
1405 1474 4.578928 ACCACAGAAACTAATCGCAAACTT 59.421 37.500 0.00 0.00 0.00 2.66
1410 1479 6.811253 AATTAACCACAGAAACTAATCGCA 57.189 33.333 0.00 0.00 0.00 5.10
1412 1481 7.903431 GCAGTAATTAACCACAGAAACTAATCG 59.097 37.037 0.00 0.00 0.00 3.34
1417 1486 6.428159 CAGAGCAGTAATTAACCACAGAAACT 59.572 38.462 0.00 0.00 0.00 2.66
1419 1488 6.204688 CACAGAGCAGTAATTAACCACAGAAA 59.795 38.462 0.00 0.00 0.00 2.52
1440 1513 4.724697 CGTTTCCTGCGCGCACAG 62.725 66.667 33.09 24.41 37.42 3.66
1610 1689 1.757682 GATTATTCCCCACAACGCCA 58.242 50.000 0.00 0.00 0.00 5.69
1689 1771 3.940852 TGCTCACAAGGCATAGTACATTG 59.059 43.478 0.00 0.00 34.56 2.82
1789 1875 6.785191 CACTTTACTTCGTGCCATGATAAAT 58.215 36.000 0.00 0.00 0.00 1.40
1962 2048 9.927668 CTAAAATATTCCTTTGCTTTTCCAGAA 57.072 29.630 0.00 0.00 0.00 3.02
1988 2075 9.875691 ATATCCCTTTGCTTCTTATTCAAAAAC 57.124 29.630 0.00 0.00 30.47 2.43
2003 2090 6.202188 CAGCAATTTCATCAATATCCCTTTGC 59.798 38.462 0.00 0.00 36.80 3.68
2203 2290 1.386533 ACGTCGGGTTGTATCGAGAT 58.613 50.000 0.00 0.00 36.00 2.75
2216 2303 2.866156 ACATGCTTGATCATAACGTCGG 59.134 45.455 6.60 0.00 0.00 4.79
2233 2320 5.455392 CCTAAGCTCAAGTTGTTTGACATG 58.545 41.667 2.11 0.00 40.82 3.21
2358 2542 6.998802 TCTTCTTATTAGCCAGGCTCTAATC 58.001 40.000 20.38 0.00 40.44 1.75
2420 2605 5.969423 TGTGTACGCTTAGCTTTAGGTAAT 58.031 37.500 8.10 0.00 37.37 1.89
2454 2639 8.077991 TGAAATTTGAGCAAATGAGTAGAACAG 58.922 33.333 9.02 0.00 40.57 3.16
2457 2642 8.030692 CCATGAAATTTGAGCAAATGAGTAGAA 58.969 33.333 9.02 0.00 40.57 2.10
2458 2643 7.363181 CCCATGAAATTTGAGCAAATGAGTAGA 60.363 37.037 9.02 0.00 40.57 2.59
2459 2644 6.755141 CCCATGAAATTTGAGCAAATGAGTAG 59.245 38.462 9.02 1.50 40.57 2.57
2604 2789 8.193953 ACTGGTAAATGAAACCTGAATGAAAT 57.806 30.769 6.20 0.00 38.80 2.17
2610 2795 5.782893 CCAACTGGTAAATGAAACCTGAA 57.217 39.130 6.20 0.00 38.80 3.02
2739 2924 3.265791 GTTACTGCTCAATCAGACAGGG 58.734 50.000 0.00 0.00 37.51 4.45
2754 2939 3.820467 TGGAAAACAGCTCATGGTTACTG 59.180 43.478 0.00 0.00 38.08 2.74
2764 2949 8.593492 AAGTGAATAAAATTGGAAAACAGCTC 57.407 30.769 0.00 0.00 0.00 4.09
2849 3034 5.600696 AGAAGGTTCGAATGCAACAAAAAT 58.399 33.333 0.00 0.00 0.00 1.82
2912 3123 2.841442 AGAGGTTCCAGTGTAACAGC 57.159 50.000 0.71 0.00 41.43 4.40
2913 3124 5.186021 AGTCATAGAGGTTCCAGTGTAACAG 59.814 44.000 0.71 0.00 41.43 3.16
2943 3154 9.288576 AGATTTCAAGTGAATGATAGTGAACAA 57.711 29.630 0.00 0.00 33.54 2.83
3043 3254 5.846203 TCAAAATCAAGCTTTTGAGAAGGG 58.154 37.500 7.12 0.00 45.45 3.95
3154 3365 7.972277 GTGTTACGACATTAGAGAGTATTTGGA 59.028 37.037 0.00 0.00 38.23 3.53
3168 3379 7.724305 AAGACATTACAAGTGTTACGACATT 57.276 32.000 0.00 0.00 38.23 2.71
3169 3380 8.706035 GTTAAGACATTACAAGTGTTACGACAT 58.294 33.333 0.00 0.00 38.23 3.06
3170 3381 7.705752 TGTTAAGACATTACAAGTGTTACGACA 59.294 33.333 0.00 0.00 0.00 4.35
3171 3382 8.000435 GTGTTAAGACATTACAAGTGTTACGAC 59.000 37.037 0.00 0.00 38.23 4.34
3174 3385 9.646336 CAAGTGTTAAGACATTACAAGTGTTAC 57.354 33.333 5.45 0.00 38.23 2.50
3178 3389 9.009327 CAAACAAGTGTTAAGACATTACAAGTG 57.991 33.333 5.45 0.00 38.23 3.16
3179 3390 7.700656 GCAAACAAGTGTTAAGACATTACAAGT 59.299 33.333 5.45 0.00 38.23 3.16
3180 3391 7.700234 TGCAAACAAGTGTTAAGACATTACAAG 59.300 33.333 5.45 0.00 38.23 3.16
3182 3393 7.089770 TGCAAACAAGTGTTAAGACATTACA 57.910 32.000 5.45 0.00 38.23 2.41
3183 3394 8.574196 AATGCAAACAAGTGTTAAGACATTAC 57.426 30.769 5.45 0.00 38.23 1.89
3184 3395 8.409371 TGAATGCAAACAAGTGTTAAGACATTA 58.591 29.630 5.45 0.00 38.23 1.90
3186 3397 6.804677 TGAATGCAAACAAGTGTTAAGACAT 58.195 32.000 5.45 0.00 38.23 3.06
3187 3398 6.201226 TGAATGCAAACAAGTGTTAAGACA 57.799 33.333 5.45 0.00 37.25 3.41
3188 3399 8.970691 ATATGAATGCAAACAAGTGTTAAGAC 57.029 30.769 0.00 0.00 37.25 3.01
3190 3401 7.962373 TCGATATGAATGCAAACAAGTGTTAAG 59.038 33.333 0.00 0.00 37.25 1.85
3192 3403 7.371126 TCGATATGAATGCAAACAAGTGTTA 57.629 32.000 0.00 0.00 37.25 2.41
3193 3404 6.252967 TCGATATGAATGCAAACAAGTGTT 57.747 33.333 0.00 0.00 40.50 3.32
3194 3405 5.878332 TCGATATGAATGCAAACAAGTGT 57.122 34.783 0.00 0.00 0.00 3.55
3195 3406 7.745022 AATTCGATATGAATGCAAACAAGTG 57.255 32.000 0.00 0.00 46.65 3.16
3196 3407 9.289303 GTTAATTCGATATGAATGCAAACAAGT 57.711 29.630 0.00 0.00 46.65 3.16
3197 3408 8.745837 GGTTAATTCGATATGAATGCAAACAAG 58.254 33.333 0.00 0.00 46.65 3.16
3199 3410 7.995289 AGGTTAATTCGATATGAATGCAAACA 58.005 30.769 0.00 0.00 46.65 2.83
3280 3540 4.837860 TCAATAGGTTTGCCCAGTTCATTT 59.162 37.500 0.00 0.00 34.66 2.32
3313 3573 5.509832 AGCCAAATATATGATCCTCAGCA 57.490 39.130 0.00 0.00 0.00 4.41
3363 3623 6.490566 ACAAGTAACATTGAAACGGATACC 57.509 37.500 0.00 0.00 34.20 2.73
3645 3907 8.871862 GCAGAAGATTACATATAGCAAGAGATG 58.128 37.037 0.00 0.00 0.00 2.90
4015 4277 5.815222 TCAGATTGACTTCAACAAGAAACGA 59.185 36.000 0.00 0.00 38.86 3.85
4138 4400 7.648142 TGATGGAAAAAGTCATGTAAACAGAC 58.352 34.615 0.00 0.00 0.00 3.51
4253 4515 7.130681 TGGATACACCATGAATATACACACA 57.869 36.000 0.00 0.00 46.17 3.72
4268 4530 5.716094 GGTAACAAAACCAATGGATACACC 58.284 41.667 6.16 0.00 44.91 4.16
4386 4650 6.016276 CAGTCCAGTACCTGCAAAATAGTTTT 60.016 38.462 0.00 0.00 0.00 2.43
4476 4740 1.770110 TCCACTGAGGGTGCCAGTT 60.770 57.895 0.00 0.00 42.44 3.16
4544 4808 5.822519 AGTGTTGATGTGTACAGTGATTTGT 59.177 36.000 0.00 0.00 35.09 2.83
4550 4814 5.466393 TCATTCAGTGTTGATGTGTACAGTG 59.534 40.000 0.00 0.00 43.70 3.66
4553 4817 5.610398 AGTCATTCAGTGTTGATGTGTACA 58.390 37.500 0.00 0.00 32.27 2.90
4563 4827 2.146342 CAAGGCGAGTCATTCAGTGTT 58.854 47.619 0.00 0.00 0.00 3.32
4572 4836 0.756294 TCCTGAAACAAGGCGAGTCA 59.244 50.000 0.00 0.00 37.24 3.41
4658 4922 0.528684 GGAGGAACTTGCGGATCGAG 60.529 60.000 0.00 0.00 41.55 4.04
4720 4984 6.564328 ACAACAAAGAAAAGATGAGTTCACC 58.436 36.000 0.00 0.00 0.00 4.02
4728 4994 6.912051 TGTTCGATGACAACAAAGAAAAGATG 59.088 34.615 0.00 0.00 30.67 2.90
4729 4995 7.026631 TGTTCGATGACAACAAAGAAAAGAT 57.973 32.000 0.00 0.00 30.67 2.40
4730 4996 6.429791 TGTTCGATGACAACAAAGAAAAGA 57.570 33.333 0.00 0.00 30.67 2.52
4736 5002 5.959527 CCGATAATGTTCGATGACAACAAAG 59.040 40.000 0.00 0.00 41.62 2.77
4737 5003 5.410132 ACCGATAATGTTCGATGACAACAAA 59.590 36.000 0.00 0.00 41.62 2.83
4740 5006 4.804139 AGACCGATAATGTTCGATGACAAC 59.196 41.667 0.00 0.00 41.62 3.32
4742 5008 4.649088 AGACCGATAATGTTCGATGACA 57.351 40.909 0.00 0.00 41.62 3.58
4743 5009 5.041287 TCAAGACCGATAATGTTCGATGAC 58.959 41.667 0.00 0.00 41.62 3.06
4804 5073 9.052759 TCAAGATCACACATCATATCATCTTTG 57.947 33.333 0.00 0.00 28.74 2.77
4918 5187 3.525537 TCCAAGAACTGAAGATCATCGC 58.474 45.455 0.00 0.00 0.00 4.58
4956 5229 4.467769 AGATACATGGCAGCTTGCTAAAT 58.532 39.130 0.00 0.00 44.28 1.40
5155 5455 1.372582 TCAGAACAATCGCAGCATCC 58.627 50.000 0.00 0.00 0.00 3.51
5160 5460 7.379529 ACAAAATTTACTTCAGAACAATCGCAG 59.620 33.333 0.00 0.00 0.00 5.18
5172 5472 6.043411 CCGAAACCCAACAAAATTTACTTCA 58.957 36.000 0.00 0.00 0.00 3.02
5198 5498 0.937304 GAACGTTGCTCTTGCTCACA 59.063 50.000 5.00 0.00 40.48 3.58
5199 5499 1.070309 CAGAACGTTGCTCTTGCTCAC 60.070 52.381 5.00 0.00 40.48 3.51
5215 5515 3.650942 ACCCACCACAATCTACTTCAGAA 59.349 43.478 0.00 0.00 36.67 3.02
5216 5516 3.007940 CACCCACCACAATCTACTTCAGA 59.992 47.826 0.00 0.00 37.79 3.27
5217 5517 3.338249 CACCCACCACAATCTACTTCAG 58.662 50.000 0.00 0.00 0.00 3.02
5218 5518 2.039746 CCACCCACCACAATCTACTTCA 59.960 50.000 0.00 0.00 0.00 3.02
5219 5519 2.039879 ACCACCCACCACAATCTACTTC 59.960 50.000 0.00 0.00 0.00 3.01
5220 5520 2.062636 ACCACCCACCACAATCTACTT 58.937 47.619 0.00 0.00 0.00 2.24
5221 5521 1.742308 ACCACCCACCACAATCTACT 58.258 50.000 0.00 0.00 0.00 2.57
5262 5569 2.892373 ATGTTAACAACGTGATGCCG 57.108 45.000 13.23 0.00 0.00 5.69
5273 5580 0.894141 GTGGCCCATGCATGTTAACA 59.106 50.000 24.58 11.41 40.13 2.41
5292 5600 6.074142 GCAAGTGCCTGATTTTTGTTAAGAAG 60.074 38.462 0.00 0.00 34.31 2.85
5310 5618 4.691860 ACTTGTCAATGATAGCAAGTGC 57.308 40.909 14.36 0.00 46.43 4.40
5457 5774 4.995058 ACACCCACCCACCCGGAT 62.995 66.667 0.73 0.00 34.64 4.18
5460 5777 4.947147 CACACACCCACCCACCCG 62.947 72.222 0.00 0.00 0.00 5.28
5462 5779 2.864770 AAACCACACACCCACCCACC 62.865 60.000 0.00 0.00 0.00 4.61
5464 5781 1.380515 CAAACCACACACCCACCCA 60.381 57.895 0.00 0.00 0.00 4.51
5466 5783 1.339929 GATTCAAACCACACACCCACC 59.660 52.381 0.00 0.00 0.00 4.61
5467 5784 2.028130 TGATTCAAACCACACACCCAC 58.972 47.619 0.00 0.00 0.00 4.61
5468 5785 2.092158 TCTGATTCAAACCACACACCCA 60.092 45.455 0.00 0.00 0.00 4.51
5469 5786 2.554032 CTCTGATTCAAACCACACACCC 59.446 50.000 0.00 0.00 0.00 4.61
5470 5787 2.554032 CCTCTGATTCAAACCACACACC 59.446 50.000 0.00 0.00 0.00 4.16
5474 5791 2.655090 TGCCTCTGATTCAAACCACA 57.345 45.000 0.00 0.00 0.00 4.17
5484 5801 1.069427 GAGCTCGCATGCCTCTGAT 59.931 57.895 13.15 0.00 0.00 2.90
5662 5979 1.390463 GTCTTCAAGAACATCGTCGGC 59.610 52.381 0.00 0.00 0.00 5.54
5820 6137 2.282958 AGGACTCCAAGTCGGCGA 60.283 61.111 4.99 4.99 45.96 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.