Multiple sequence alignment - TraesCS6B01G191100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G191100 chr6B 100.000 9212 0 0 1 9212 224875955 224866744 0.000000e+00 17012.0
1 TraesCS6B01G191100 chr6B 90.972 144 12 1 4132 4274 476122153 476122010 9.440000e-45 193.0
2 TraesCS6B01G191100 chr6B 97.561 41 1 0 3960 4000 224871327 224871367 4.610000e-08 71.3
3 TraesCS6B01G191100 chr6B 97.561 41 1 0 4589 4629 224871956 224871996 4.610000e-08 71.3
4 TraesCS6B01G191100 chr6D 97.854 4660 82 6 360 5003 126439077 126434420 0.000000e+00 8035.0
5 TraesCS6B01G191100 chr6D 96.932 3357 72 11 5095 8428 126434420 126431072 0.000000e+00 5600.0
6 TraesCS6B01G191100 chr6D 92.500 640 35 7 8579 9212 126431081 126430449 0.000000e+00 904.0
7 TraesCS6B01G191100 chr6D 87.500 176 12 6 4131 4298 13287630 13287803 2.620000e-45 195.0
8 TraesCS6B01G191100 chr6D 89.815 108 11 0 4148 4255 131679843 131679736 1.250000e-28 139.0
9 TraesCS6B01G191100 chr6D 92.754 69 5 0 4131 4199 303635916 303635848 5.890000e-17 100.0
10 TraesCS6B01G191100 chr6D 95.556 45 2 0 4235 4279 153193583 153193539 1.280000e-08 73.1
11 TraesCS6B01G191100 chr6D 97.561 41 1 0 3960 4000 126434794 126434834 4.610000e-08 71.3
12 TraesCS6B01G191100 chr6D 97.561 41 1 0 4589 4629 126435423 126435463 4.610000e-08 71.3
13 TraesCS6B01G191100 chr6A 94.707 2815 97 20 5645 8420 153673259 153676060 0.000000e+00 4325.0
14 TraesCS6B01G191100 chr6A 97.013 1406 35 6 360 1760 153668217 153669620 0.000000e+00 2357.0
15 TraesCS6B01G191100 chr6A 97.118 1388 38 1 1817 3204 153669878 153671263 0.000000e+00 2340.0
16 TraesCS6B01G191100 chr6A 94.223 952 28 14 3204 4130 153671583 153672532 0.000000e+00 1428.0
17 TraesCS6B01G191100 chr6A 90.794 554 26 9 8667 9212 153678180 153678716 0.000000e+00 717.0
18 TraesCS6B01G191100 chr6A 95.866 387 16 0 4298 4684 153672525 153672911 2.180000e-175 627.0
19 TraesCS6B01G191100 chr6A 96.233 292 11 0 4683 4974 153672943 153673234 6.470000e-131 479.0
20 TraesCS6B01G191100 chr6A 90.173 173 14 2 8411 8580 105041903 105042075 1.200000e-53 222.0
21 TraesCS6B01G191100 chr6A 98.485 66 1 0 1760 1825 153669647 153669712 5.840000e-22 117.0
22 TraesCS6B01G191100 chr6A 91.566 83 7 0 1 83 153667945 153668027 2.100000e-21 115.0
23 TraesCS6B01G191100 chr6A 97.561 41 1 0 4589 4629 153672402 153672362 4.610000e-08 71.3
24 TraesCS6B01G191100 chr6A 97.561 41 1 0 3960 4000 153672856 153672816 4.610000e-08 71.3
25 TraesCS6B01G191100 chr6A 97.436 39 1 0 8579 8617 153676059 153676097 5.970000e-07 67.6
26 TraesCS6B01G191100 chr5B 93.299 1149 66 5 1854 3000 448848136 448849275 0.000000e+00 1685.0
27 TraesCS6B01G191100 chr5B 89.385 179 16 3 4131 4307 432709735 432709912 1.200000e-53 222.0
28 TraesCS6B01G191100 chr5B 90.132 152 11 3 4149 4298 465998720 465998869 2.620000e-45 195.0
29 TraesCS6B01G191100 chr5B 90.196 51 5 0 8001 8051 349386044 349385994 5.970000e-07 67.6
30 TraesCS6B01G191100 chr4D 96.335 191 6 1 5128 5318 220345151 220344962 6.940000e-81 313.0
31 TraesCS6B01G191100 chr4D 95.833 48 2 0 8006 8053 254571682 254571635 2.760000e-10 78.7
32 TraesCS6B01G191100 chr4B 96.335 191 6 1 5128 5317 315725225 315725415 6.940000e-81 313.0
33 TraesCS6B01G191100 chr3A 94.872 195 8 2 5128 5322 51773744 51773936 4.180000e-78 303.0
34 TraesCS6B01G191100 chr3A 93.413 167 11 0 4131 4297 573979464 573979298 1.990000e-61 248.0
35 TraesCS6B01G191100 chr3A 92.157 102 8 0 4997 5098 77405031 77404930 2.680000e-30 145.0
36 TraesCS6B01G191100 chr3A 91.429 105 9 0 4995 5099 614663530 614663634 2.680000e-30 145.0
37 TraesCS6B01G191100 chr3A 94.545 55 3 0 7998 8052 726128654 726128708 1.650000e-12 86.1
38 TraesCS6B01G191100 chr3A 92.308 52 4 0 8001 8052 57885330 57885279 3.570000e-09 75.0
39 TraesCS6B01G191100 chr2B 96.703 182 6 0 5128 5309 718591351 718591532 4.180000e-78 303.0
40 TraesCS6B01G191100 chr2B 92.814 167 10 2 4131 4297 18927088 18927252 3.320000e-59 241.0
41 TraesCS6B01G191100 chr2B 89.247 186 16 3 8400 8582 190234945 190234761 7.190000e-56 230.0
42 TraesCS6B01G191100 chr2B 86.066 122 11 3 5980 6096 185812836 185812956 9.710000e-25 126.0
43 TraesCS6B01G191100 chr2B 85.088 114 13 3 84 194 70854782 70854670 7.560000e-21 113.0
44 TraesCS6B01G191100 chr1D 94.872 195 9 1 5128 5322 193964399 193964206 4.180000e-78 303.0
45 TraesCS6B01G191100 chr1D 94.652 187 10 0 5128 5314 411572419 411572605 3.250000e-74 291.0
46 TraesCS6B01G191100 chr1D 89.831 177 14 3 8419 8592 393753449 393753274 3.350000e-54 224.0
47 TraesCS6B01G191100 chr1D 90.909 143 12 1 4156 4297 149643562 149643420 3.400000e-44 191.0
48 TraesCS6B01G191100 chr1D 85.000 120 15 1 4149 4268 178456946 178456830 1.620000e-22 119.0
49 TraesCS6B01G191100 chr1D 84.426 122 16 3 5976 6096 130310434 130310553 5.840000e-22 117.0
50 TraesCS6B01G191100 chr1D 93.750 48 2 1 8005 8052 481934691 481934737 4.610000e-08 71.3
51 TraesCS6B01G191100 chr1A 93.939 198 9 3 5128 5325 508148798 508148992 6.990000e-76 296.0
52 TraesCS6B01G191100 chr1A 91.124 169 12 2 8417 8582 393948620 393948452 9.310000e-55 226.0
53 TraesCS6B01G191100 chr1A 89.333 150 9 4 4149 4298 181768938 181768796 2.040000e-41 182.0
54 TraesCS6B01G191100 chr1A 93.137 102 5 2 4998 5098 464800316 464800416 2.070000e-31 148.0
55 TraesCS6B01G191100 chr1A 91.837 49 3 1 8006 8054 144553427 144553380 5.970000e-07 67.6
56 TraesCS6B01G191100 chr2A 93.434 198 9 3 5128 5322 449270920 449271116 3.250000e-74 291.0
57 TraesCS6B01G191100 chr2A 92.216 167 12 1 4131 4297 13034821 13034656 1.550000e-57 235.0
58 TraesCS6B01G191100 chr3D 92.899 169 12 0 4129 4297 479627397 479627565 7.140000e-61 246.0
59 TraesCS6B01G191100 chr3D 87.179 195 17 7 8393 8581 7232819 7233011 2.010000e-51 215.0
60 TraesCS6B01G191100 chr3D 89.655 145 14 1 4146 4289 577402006 577402150 5.680000e-42 183.0
61 TraesCS6B01G191100 chr3D 85.600 125 14 3 5976 6096 172356705 172356581 2.700000e-25 128.0
62 TraesCS6B01G191100 chr3D 89.216 102 11 0 5969 6070 484118944 484119045 2.700000e-25 128.0
63 TraesCS6B01G191100 chr3D 83.810 105 14 2 88 189 511260719 511260615 7.610000e-16 97.1
64 TraesCS6B01G191100 chr2D 91.716 169 11 2 8418 8583 446317642 446317810 2.000000e-56 231.0
65 TraesCS6B01G191100 chr2D 86.598 194 21 4 8391 8580 457644198 457644006 9.370000e-50 209.0
66 TraesCS6B01G191100 chr2D 83.333 210 31 4 8998 9205 374074464 374074257 3.400000e-44 191.0
67 TraesCS6B01G191100 chr2D 96.078 102 4 0 4997 5098 14758983 14758882 5.720000e-37 167.0
68 TraesCS6B01G191100 chr2D 95.833 48 1 1 8006 8053 312630015 312629969 9.920000e-10 76.8
69 TraesCS6B01G191100 chr3B 89.831 177 15 2 8407 8580 120617089 120616913 3.350000e-54 224.0
70 TraesCS6B01G191100 chr3B 96.842 95 3 0 5005 5099 5897301 5897207 9.570000e-35 159.0
71 TraesCS6B01G191100 chr3B 92.784 97 7 0 5002 5098 677322336 677322432 3.470000e-29 141.0
72 TraesCS6B01G191100 chr5A 94.483 145 7 1 4131 4274 277726499 277726643 1.200000e-53 222.0
73 TraesCS6B01G191100 chr7A 89.266 177 17 1 8404 8578 216344573 216344397 4.330000e-53 220.0
74 TraesCS6B01G191100 chr7A 90.654 107 10 0 4989 5095 727358546 727358440 9.640000e-30 143.0
75 TraesCS6B01G191100 chr7A 83.594 128 15 4 5974 6096 701309240 701309114 2.100000e-21 115.0
76 TraesCS6B01G191100 chr7A 100.000 30 0 0 147 176 5417972 5418001 1.000000e-03 56.5
77 TraesCS6B01G191100 chr7B 92.105 152 12 0 4146 4297 5918372 5918221 2.010000e-51 215.0
78 TraesCS6B01G191100 chr5D 91.503 153 12 1 4146 4298 69940430 69940279 9.370000e-50 209.0
79 TraesCS6B01G191100 chr5D 96.748 123 4 0 4146 4268 325957613 325957491 1.210000e-48 206.0
80 TraesCS6B01G191100 chr5D 90.000 120 12 0 4179 4298 387623904 387624023 1.240000e-33 156.0
81 TraesCS6B01G191100 chr1B 90.667 150 13 1 4149 4298 256197514 256197366 2.030000e-46 198.0
82 TraesCS6B01G191100 chr1B 92.929 99 7 0 5000 5098 677585902 677585804 2.680000e-30 145.0
83 TraesCS6B01G191100 chr1B 86.066 122 14 3 5976 6096 217290632 217290751 2.700000e-25 128.0
84 TraesCS6B01G191100 chrUn 89.333 150 16 0 4148 4297 75469241 75469390 1.220000e-43 189.0
85 TraesCS6B01G191100 chrUn 96.154 52 2 0 4131 4182 43287286 43287235 1.650000e-12 86.1
86 TraesCS6B01G191100 chr7D 90.845 142 12 1 4134 4274 626378320 626378179 1.220000e-43 189.0
87 TraesCS6B01G191100 chr4A 89.655 116 11 1 4984 5098 438620887 438621002 7.450000e-31 147.0
88 TraesCS6B01G191100 chr4A 86.400 125 10 5 5977 6096 477033207 477033329 7.510000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G191100 chr6B 224866744 224875955 9211 True 17012.000000 17012 100.0000 1 9212 1 chr6B.!!$R1 9211
1 TraesCS6B01G191100 chr6D 126430449 126439077 8628 True 4846.333333 8035 95.7620 360 9212 3 chr6D.!!$R4 8852
2 TraesCS6B01G191100 chr6A 153667945 153678716 10771 False 1257.260000 4325 95.3441 1 9212 10 chr6A.!!$F2 9211
3 TraesCS6B01G191100 chr5B 448848136 448849275 1139 False 1685.000000 1685 93.2990 1854 3000 1 chr5B.!!$F2 1146

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
296 297 1.285962 CAATCCCCATGACCTTGACCT 59.714 52.381 0.00 0.0 0.00 3.85 F
350 351 1.393603 TTGGCGGTCACAAACAATCA 58.606 45.000 0.00 0.0 0.00 2.57 F
1509 1548 2.030274 CGTGATGTCCGTCCATATAGCA 60.030 50.000 0.00 0.0 0.00 3.49 F
2555 2795 1.807742 CAGGTCTATCGGACGGAGATC 59.192 57.143 0.00 0.0 45.35 2.75 F
4202 4788 0.951040 GCCTGCAGTTGCGACTAGTT 60.951 55.000 13.81 0.0 45.83 2.24 F
5018 5637 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.0 0.00 3.28 F
5019 5638 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.0 0.00 2.44 F
6411 7041 0.178975 ACCTGATTTGGGGCGTTTGA 60.179 50.000 0.00 0.0 0.00 2.69 F
6573 7211 0.472044 GGCCCCTTCTCATCTTCCTC 59.528 60.000 0.00 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1341 1380 2.583143 ACTAACTGAAACAACTGCCCC 58.417 47.619 0.00 0.0 0.00 5.80 R
1654 1694 3.117169 AGGAAGCATGGGCCATAAACATA 60.117 43.478 20.73 0.0 42.56 2.29 R
3317 3878 4.437390 GGATGTGTGTCCAAGCTAAATTCG 60.437 45.833 0.00 0.0 38.20 3.34 R
4284 4870 0.874390 TCAGCTGCATGGTTTTCGAC 59.126 50.000 9.47 0.0 0.00 4.20 R
5081 5700 0.038744 AGTTACTCCCTCCGTCCGAA 59.961 55.000 0.00 0.0 0.00 4.30 R
6098 6726 0.938713 TTTTAGTTGTGGTGCGACCG 59.061 50.000 0.00 0.0 42.58 4.79 R
6649 7287 2.350484 CGCGCTCTCCGATAGTAATTCA 60.350 50.000 5.56 0.0 40.02 2.57 R
8070 8730 0.042131 ATTGGACCTCCTACACCCGA 59.958 55.000 0.00 0.0 36.82 5.14 R
8564 9228 1.076677 TGAACTACTCCCTCCGTTCCT 59.923 52.381 0.00 0.0 35.97 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 6.829298 TCGAGGATAAACTAGAGTGAACTCAT 59.171 38.462 12.76 1.32 45.21 2.90
34 35 7.991460 TCGAGGATAAACTAGAGTGAACTCATA 59.009 37.037 12.76 2.33 45.21 2.15
43 44 7.493367 ACTAGAGTGAACTCATATAAAGCCAC 58.507 38.462 12.76 0.00 45.21 5.01
78 79 9.985730 AGTGTTTCACATTTATGAACAATCATT 57.014 25.926 2.80 0.00 40.70 2.57
89 90 6.624352 ATGAACAATCATTGATACTTCCCG 57.376 37.500 3.79 0.00 43.89 5.14
90 91 5.496556 TGAACAATCATTGATACTTCCCGT 58.503 37.500 3.79 0.00 0.00 5.28
91 92 5.584649 TGAACAATCATTGATACTTCCCGTC 59.415 40.000 3.79 0.00 0.00 4.79
92 93 4.451900 ACAATCATTGATACTTCCCGTCC 58.548 43.478 3.79 0.00 0.00 4.79
93 94 2.882927 TCATTGATACTTCCCGTCCG 57.117 50.000 0.00 0.00 0.00 4.79
94 95 2.380941 TCATTGATACTTCCCGTCCGA 58.619 47.619 0.00 0.00 0.00 4.55
95 96 2.761767 TCATTGATACTTCCCGTCCGAA 59.238 45.455 0.00 0.00 0.00 4.30
96 97 3.196039 TCATTGATACTTCCCGTCCGAAA 59.804 43.478 0.00 0.00 0.00 3.46
97 98 3.681593 TTGATACTTCCCGTCCGAAAA 57.318 42.857 0.00 0.00 0.00 2.29
98 99 3.681593 TGATACTTCCCGTCCGAAAAA 57.318 42.857 0.00 0.00 0.00 1.94
145 146 7.496529 TGAATGTATCTAGCATTAACTTGGC 57.503 36.000 0.00 0.00 36.77 4.52
146 147 6.202762 TGAATGTATCTAGCATTAACTTGGCG 59.797 38.462 0.00 0.00 36.77 5.69
147 148 3.807622 TGTATCTAGCATTAACTTGGCGC 59.192 43.478 0.00 0.00 0.00 6.53
148 149 2.691409 TCTAGCATTAACTTGGCGCT 57.309 45.000 7.64 0.00 36.72 5.92
149 150 3.812156 TCTAGCATTAACTTGGCGCTA 57.188 42.857 7.64 0.00 34.18 4.26
151 152 2.691409 AGCATTAACTTGGCGCTAGA 57.309 45.000 7.64 0.00 0.00 2.43
152 153 3.199880 AGCATTAACTTGGCGCTAGAT 57.800 42.857 7.64 2.60 0.00 1.98
153 154 4.336889 AGCATTAACTTGGCGCTAGATA 57.663 40.909 7.64 1.55 0.00 1.98
154 155 4.058817 AGCATTAACTTGGCGCTAGATAC 58.941 43.478 7.64 0.00 0.00 2.24
155 156 3.807622 GCATTAACTTGGCGCTAGATACA 59.192 43.478 7.64 0.00 0.00 2.29
156 157 4.452455 GCATTAACTTGGCGCTAGATACAT 59.548 41.667 7.64 0.00 0.00 2.29
157 158 5.049405 GCATTAACTTGGCGCTAGATACATT 60.049 40.000 7.64 0.00 0.00 2.71
158 159 6.513393 GCATTAACTTGGCGCTAGATACATTT 60.513 38.462 7.64 0.00 0.00 2.32
159 160 7.307751 GCATTAACTTGGCGCTAGATACATTTA 60.308 37.037 7.64 0.00 0.00 1.40
160 161 8.721478 CATTAACTTGGCGCTAGATACATTTAT 58.279 33.333 7.64 0.00 0.00 1.40
161 162 8.671384 TTAACTTGGCGCTAGATACATTTATT 57.329 30.769 7.64 0.00 0.00 1.40
162 163 7.568199 AACTTGGCGCTAGATACATTTATTT 57.432 32.000 7.64 0.00 0.00 1.40
163 164 6.959361 ACTTGGCGCTAGATACATTTATTTG 58.041 36.000 7.64 0.00 0.00 2.32
164 165 6.765989 ACTTGGCGCTAGATACATTTATTTGA 59.234 34.615 7.64 0.00 0.00 2.69
165 166 7.282224 ACTTGGCGCTAGATACATTTATTTGAA 59.718 33.333 7.64 0.00 0.00 2.69
166 167 7.189693 TGGCGCTAGATACATTTATTTGAAG 57.810 36.000 7.64 0.00 0.00 3.02
167 168 6.204688 TGGCGCTAGATACATTTATTTGAAGG 59.795 38.462 7.64 0.00 0.00 3.46
168 169 6.426937 GGCGCTAGATACATTTATTTGAAGGA 59.573 38.462 7.64 0.00 0.00 3.36
169 170 7.291567 GCGCTAGATACATTTATTTGAAGGAC 58.708 38.462 0.00 0.00 0.00 3.85
170 171 7.042051 GCGCTAGATACATTTATTTGAAGGACA 60.042 37.037 0.00 0.00 0.00 4.02
171 172 8.826710 CGCTAGATACATTTATTTGAAGGACAA 58.173 33.333 0.00 0.00 36.65 3.18
184 185 7.518731 TTTGAAGGACAAGATTTTTCAAACG 57.481 32.000 6.60 0.00 40.68 3.60
185 186 6.443934 TGAAGGACAAGATTTTTCAAACGA 57.556 33.333 0.00 0.00 0.00 3.85
186 187 6.857956 TGAAGGACAAGATTTTTCAAACGAA 58.142 32.000 0.00 0.00 0.00 3.85
187 188 6.972328 TGAAGGACAAGATTTTTCAAACGAAG 59.028 34.615 0.00 0.00 0.00 3.79
188 189 5.831997 AGGACAAGATTTTTCAAACGAAGG 58.168 37.500 0.00 0.00 0.00 3.46
189 190 4.982295 GGACAAGATTTTTCAAACGAAGGG 59.018 41.667 0.00 0.00 0.00 3.95
190 191 5.221165 GGACAAGATTTTTCAAACGAAGGGA 60.221 40.000 0.00 0.00 0.00 4.20
191 192 5.831997 ACAAGATTTTTCAAACGAAGGGAG 58.168 37.500 0.00 0.00 0.00 4.30
192 193 5.359860 ACAAGATTTTTCAAACGAAGGGAGT 59.640 36.000 0.00 0.00 0.00 3.85
193 194 6.544564 ACAAGATTTTTCAAACGAAGGGAGTA 59.455 34.615 0.00 0.00 0.00 2.59
194 195 7.230712 ACAAGATTTTTCAAACGAAGGGAGTAT 59.769 33.333 0.00 0.00 0.00 2.12
195 196 8.726988 CAAGATTTTTCAAACGAAGGGAGTATA 58.273 33.333 0.00 0.00 0.00 1.47
196 197 9.462606 AAGATTTTTCAAACGAAGGGAGTATAT 57.537 29.630 0.00 0.00 0.00 0.86
203 204 9.754382 TTCAAACGAAGGGAGTATATAATGTAC 57.246 33.333 0.00 0.00 0.00 2.90
207 208 9.578576 AACGAAGGGAGTATATAATGTACTGTA 57.421 33.333 0.00 0.00 32.77 2.74
264 265 4.338400 ACCTTTTAGATTAAATCCCTGCGC 59.662 41.667 0.00 0.00 0.00 6.09
283 284 2.032030 CGCGATTGTACATTCAATCCCC 60.032 50.000 15.90 1.24 46.13 4.81
296 297 1.285962 CAATCCCCATGACCTTGACCT 59.714 52.381 0.00 0.00 0.00 3.85
297 298 2.509548 CAATCCCCATGACCTTGACCTA 59.490 50.000 0.00 0.00 0.00 3.08
301 302 3.596046 TCCCCATGACCTTGACCTAAAAT 59.404 43.478 0.00 0.00 0.00 1.82
319 320 8.265764 ACCTAAAATAAGATAACCACCAGACTC 58.734 37.037 0.00 0.00 0.00 3.36
334 335 3.548818 CCAGACTCTTTGTTTCGCTTTGG 60.549 47.826 0.00 0.00 0.00 3.28
335 336 2.033424 AGACTCTTTGTTTCGCTTTGGC 59.967 45.455 0.00 0.00 0.00 4.52
350 351 1.393603 TTGGCGGTCACAAACAATCA 58.606 45.000 0.00 0.00 0.00 2.57
461 498 6.938596 TCTAGTACCTGCCTAAAAAGGAAAAC 59.061 38.462 0.00 0.00 37.01 2.43
469 507 4.678287 GCCTAAAAAGGAAAACTTGTACGC 59.322 41.667 0.00 0.00 39.96 4.42
1330 1369 6.463995 TTGCAAGTTCCACTTAAAATCTGT 57.536 33.333 0.00 0.00 36.03 3.41
1341 1380 5.063944 CACTTAAAATCTGTGAGGACGATGG 59.936 44.000 0.00 0.00 33.95 3.51
1509 1548 2.030274 CGTGATGTCCGTCCATATAGCA 60.030 50.000 0.00 0.00 0.00 3.49
1654 1694 6.072175 TGTTGCACTTCTCTGTTTTAGTTGTT 60.072 34.615 0.00 0.00 0.00 2.83
1991 2231 3.192844 CGACTAGACTTGGAGGCAAGTAA 59.807 47.826 0.00 0.00 44.53 2.24
2240 2480 5.295292 GTGATCACTGCTAGCATATGTTTGT 59.705 40.000 19.72 7.84 0.00 2.83
2411 2651 3.134623 ACCTCGAGCAATCACCAATATCA 59.865 43.478 6.99 0.00 0.00 2.15
2555 2795 1.807742 CAGGTCTATCGGACGGAGATC 59.192 57.143 0.00 0.00 45.35 2.75
2679 2919 6.271159 ACTTCTAGAAAGAGGACCTCAAATGT 59.729 38.462 23.60 9.71 33.20 2.71
2781 3021 7.120726 AGGTACTTTCTGGTTTGTATACAATGC 59.879 37.037 18.69 13.95 31.80 3.56
2820 3060 4.823989 CGGGGCATCTCTCTATTTCATTTT 59.176 41.667 0.00 0.00 0.00 1.82
3165 3406 7.820386 CCATTGTGAAATGATCATGGAAGAAAA 59.180 33.333 9.46 0.00 37.75 2.29
3317 3878 3.835395 CCTCCTTCAGAGTATACCCATCC 59.165 52.174 0.00 0.00 41.47 3.51
3434 3997 6.239217 TGCAGACACTCAATATTAGGACAT 57.761 37.500 0.00 0.00 0.00 3.06
3596 4159 7.483375 CGTAAACAGTTTTCAAATGAGTGTTGA 59.517 33.333 3.25 0.00 33.21 3.18
3629 4192 2.067013 GTGTTAACGAGGTCTTCTGCC 58.933 52.381 0.26 0.00 0.00 4.85
3788 4351 6.808704 TGACTGAACTCGTGAAAGATCATAAG 59.191 38.462 0.00 0.00 38.01 1.73
4046 4632 1.211457 AGAAGATCCAGGCACATGGTC 59.789 52.381 0.69 0.00 41.43 4.02
4048 4634 1.293062 AGATCCAGGCACATGGTCTT 58.707 50.000 0.69 0.00 41.43 3.01
4140 4726 3.243035 CGAACAGCTGAACATGGTTTTCA 60.243 43.478 23.35 0.00 0.00 2.69
4202 4788 0.951040 GCCTGCAGTTGCGACTAGTT 60.951 55.000 13.81 0.00 45.83 2.24
4209 4795 1.973138 GTTGCGACTAGTTGCGACTA 58.027 50.000 34.66 16.23 46.30 2.59
4247 4833 6.715464 ACACTAAGTTGAGTCGACATTTTTG 58.285 36.000 19.50 7.99 0.00 2.44
4573 5159 4.874977 GTCTAGGAGGTGGCGCGC 62.875 72.222 25.94 25.94 0.00 6.86
4748 5367 4.756135 TGGAAGAATTTTGGATTTGCTTGC 59.244 37.500 0.00 0.00 0.00 4.01
4795 5414 5.725490 AGATAGAGGAGGAAGATGACCAAT 58.275 41.667 0.00 0.00 0.00 3.16
4804 5423 4.536090 AGGAAGATGACCAATGGTAGTTGA 59.464 41.667 4.23 0.00 35.25 3.18
4988 5607 0.467844 AGGTTCATGCAGGCACAACA 60.468 50.000 15.79 0.00 0.00 3.33
5008 5627 5.562298 ACAATGTGTGTTTAGTACTCCCT 57.438 39.130 0.00 0.00 37.01 4.20
5009 5628 5.548406 ACAATGTGTGTTTAGTACTCCCTC 58.452 41.667 0.00 0.00 37.01 4.30
5010 5629 4.820894 ATGTGTGTTTAGTACTCCCTCC 57.179 45.455 0.00 0.00 0.00 4.30
5011 5630 2.559668 TGTGTGTTTAGTACTCCCTCCG 59.440 50.000 0.00 0.00 0.00 4.63
5012 5631 2.560105 GTGTGTTTAGTACTCCCTCCGT 59.440 50.000 0.00 0.00 0.00 4.69
5013 5632 2.821969 TGTGTTTAGTACTCCCTCCGTC 59.178 50.000 0.00 0.00 0.00 4.79
5014 5633 2.165234 GTGTTTAGTACTCCCTCCGTCC 59.835 54.545 0.00 0.00 0.00 4.79
5015 5634 1.753649 GTTTAGTACTCCCTCCGTCCC 59.246 57.143 0.00 0.00 0.00 4.46
5016 5635 1.002069 TTAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
5017 5636 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
5018 5637 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
5019 5638 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
5020 5639 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
5021 5640 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5022 5641 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
5023 5642 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
5024 5643 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
5025 5644 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
5026 5645 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
5027 5646 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
5028 5647 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
5029 5648 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
5030 5649 2.671396 CCGTCCCAAAATAAGTGACTCG 59.329 50.000 0.00 0.00 0.00 4.18
5031 5650 3.581755 CGTCCCAAAATAAGTGACTCGA 58.418 45.455 0.00 0.00 0.00 4.04
5032 5651 3.367025 CGTCCCAAAATAAGTGACTCGAC 59.633 47.826 0.00 0.00 0.00 4.20
5033 5652 4.566987 GTCCCAAAATAAGTGACTCGACT 58.433 43.478 0.00 0.00 0.00 4.18
5034 5653 4.995487 GTCCCAAAATAAGTGACTCGACTT 59.005 41.667 0.00 0.00 39.54 3.01
5035 5654 5.469084 GTCCCAAAATAAGTGACTCGACTTT 59.531 40.000 0.00 0.00 37.38 2.66
5036 5655 5.468746 TCCCAAAATAAGTGACTCGACTTTG 59.531 40.000 0.00 0.00 37.38 2.77
5037 5656 5.147162 CCAAAATAAGTGACTCGACTTTGC 58.853 41.667 0.00 0.00 37.38 3.68
5038 5657 5.277779 CCAAAATAAGTGACTCGACTTTGCA 60.278 40.000 0.00 0.00 37.38 4.08
5039 5658 4.992381 AATAAGTGACTCGACTTTGCAC 57.008 40.909 0.00 0.00 37.38 4.57
5040 5659 2.604046 AAGTGACTCGACTTTGCACT 57.396 45.000 0.00 0.00 41.19 4.40
5041 5660 3.728076 AAGTGACTCGACTTTGCACTA 57.272 42.857 0.00 0.00 38.74 2.74
5042 5661 3.728076 AGTGACTCGACTTTGCACTAA 57.272 42.857 0.00 0.00 37.98 2.24
5043 5662 3.381949 AGTGACTCGACTTTGCACTAAC 58.618 45.455 0.00 0.00 37.98 2.34
5044 5663 3.068307 AGTGACTCGACTTTGCACTAACT 59.932 43.478 0.00 0.00 37.98 2.24
5045 5664 3.425858 GTGACTCGACTTTGCACTAACTC 59.574 47.826 0.00 0.00 0.00 3.01
5046 5665 3.318275 TGACTCGACTTTGCACTAACTCT 59.682 43.478 0.00 0.00 0.00 3.24
5047 5666 3.643763 ACTCGACTTTGCACTAACTCTG 58.356 45.455 0.00 0.00 0.00 3.35
5048 5667 3.068307 ACTCGACTTTGCACTAACTCTGT 59.932 43.478 0.00 0.00 0.00 3.41
5049 5668 4.277672 ACTCGACTTTGCACTAACTCTGTA 59.722 41.667 0.00 0.00 0.00 2.74
5050 5669 4.543692 TCGACTTTGCACTAACTCTGTAC 58.456 43.478 0.00 0.00 0.00 2.90
5051 5670 4.277672 TCGACTTTGCACTAACTCTGTACT 59.722 41.667 0.00 0.00 0.00 2.73
5052 5671 5.471116 TCGACTTTGCACTAACTCTGTACTA 59.529 40.000 0.00 0.00 0.00 1.82
5053 5672 6.016860 TCGACTTTGCACTAACTCTGTACTAA 60.017 38.462 0.00 0.00 0.00 2.24
5054 5673 6.639686 CGACTTTGCACTAACTCTGTACTAAA 59.360 38.462 0.00 0.00 0.00 1.85
5055 5674 7.168637 CGACTTTGCACTAACTCTGTACTAAAA 59.831 37.037 0.00 0.00 0.00 1.52
5056 5675 8.904099 ACTTTGCACTAACTCTGTACTAAAAT 57.096 30.769 0.00 0.00 0.00 1.82
5057 5676 9.338622 ACTTTGCACTAACTCTGTACTAAAATT 57.661 29.630 0.00 0.00 0.00 1.82
5060 5679 9.991906 TTGCACTAACTCTGTACTAAAATTAGT 57.008 29.630 10.43 10.43 45.39 2.24
5061 5680 9.419297 TGCACTAACTCTGTACTAAAATTAGTG 57.581 33.333 20.90 20.90 45.49 2.74
5062 5681 9.420551 GCACTAACTCTGTACTAAAATTAGTGT 57.579 33.333 23.25 2.60 44.94 3.55
5084 5703 8.548721 AGTGTAAAGTTGAGTCACTTATTTTCG 58.451 33.333 0.00 0.00 35.87 3.46
5085 5704 7.797123 GTGTAAAGTTGAGTCACTTATTTTCGG 59.203 37.037 0.00 0.00 35.87 4.30
5086 5705 7.711772 TGTAAAGTTGAGTCACTTATTTTCGGA 59.288 33.333 0.00 0.00 35.87 4.55
5087 5706 6.541111 AAGTTGAGTCACTTATTTTCGGAC 57.459 37.500 0.00 0.00 35.10 4.79
5088 5707 4.684703 AGTTGAGTCACTTATTTTCGGACG 59.315 41.667 0.00 0.00 33.84 4.79
5089 5708 3.581755 TGAGTCACTTATTTTCGGACGG 58.418 45.455 0.00 0.00 33.84 4.79
5090 5709 3.256383 TGAGTCACTTATTTTCGGACGGA 59.744 43.478 0.00 0.00 33.84 4.69
5091 5710 3.846360 AGTCACTTATTTTCGGACGGAG 58.154 45.455 0.00 0.00 33.84 4.63
5092 5711 2.928116 GTCACTTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
5093 5712 2.093869 TCACTTATTTTCGGACGGAGGG 60.094 50.000 0.00 0.00 0.00 4.30
5094 5713 2.093869 CACTTATTTTCGGACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
5115 5734 6.901300 AGGGAGTAACTCATAAGGTGTAATGA 59.099 38.462 0.00 0.00 31.08 2.57
5131 5750 5.760253 GTGTAATGATCATGTAACCAGGAGG 59.240 44.000 9.46 0.00 34.42 4.30
5132 5751 5.665360 TGTAATGATCATGTAACCAGGAGGA 59.335 40.000 9.46 0.00 34.42 3.71
5133 5752 4.970860 ATGATCATGTAACCAGGAGGAG 57.029 45.455 7.59 0.00 34.42 3.69
5299 5918 4.468153 TGTTTGGGACTAAAGGCTTTGTTT 59.532 37.500 22.32 6.15 0.00 2.83
5300 5919 4.929819 TTGGGACTAAAGGCTTTGTTTC 57.070 40.909 22.32 14.15 0.00 2.78
5468 6090 3.322254 CCATCTGGTCCTAGTGTGGATAC 59.678 52.174 0.00 0.00 38.52 2.24
5495 6117 8.090214 AGTGTAATTAAGCAAATGTCAGCAAAT 58.910 29.630 0.00 0.00 0.00 2.32
5499 6121 4.859304 AAGCAAATGTCAGCAAATCTCA 57.141 36.364 0.00 0.00 0.00 3.27
5624 6246 6.226787 TCCTCTCTAGTTTTTGAAAGCTCAG 58.773 40.000 0.00 0.00 31.69 3.35
5633 6255 8.457238 AGTTTTTGAAAGCTCAGAGTTTCTAT 57.543 30.769 18.47 0.00 34.37 1.98
6029 6656 6.644181 AGATTTGTGTAGATGCAGATGTATCG 59.356 38.462 5.44 0.00 41.21 2.92
6098 6726 0.915364 ATTTGGGACAGAGGGAGAGC 59.085 55.000 0.00 0.00 42.39 4.09
6256 6886 5.399497 CCATAATTCCCCAAGACCTCAATCT 60.399 44.000 0.00 0.00 0.00 2.40
6356 6986 6.978080 GCTACATGTAAAAATTGGTACCATGG 59.022 38.462 17.17 11.19 0.00 3.66
6396 7026 6.343703 TCATGAAATATCACTCTGTGACCTG 58.656 40.000 2.31 0.00 45.65 4.00
6400 7030 7.397221 TGAAATATCACTCTGTGACCTGATTT 58.603 34.615 2.31 6.89 45.65 2.17
6411 7041 0.178975 ACCTGATTTGGGGCGTTTGA 60.179 50.000 0.00 0.00 0.00 2.69
6573 7211 0.472044 GGCCCCTTCTCATCTTCCTC 59.528 60.000 0.00 0.00 0.00 3.71
6717 7355 3.290948 TGACTTGGTAGGTTTGTTGCT 57.709 42.857 0.00 0.00 0.00 3.91
6982 7623 7.744087 TGCATTAAGTTACTTCATTGTGAGT 57.256 32.000 0.00 2.13 0.00 3.41
7033 7674 3.006967 GTGGTCAGTACTCATCACAGGTT 59.993 47.826 5.13 0.00 0.00 3.50
7091 7734 3.608796 TGCATTTCCTGAATCGTGATCA 58.391 40.909 0.00 0.00 0.00 2.92
7248 7891 1.017177 GTTCATCGTTAGGTGCGGCA 61.017 55.000 0.00 0.00 0.00 5.69
7273 7916 2.589492 GGATCATTCTCACGCGGCG 61.589 63.158 22.36 22.36 0.00 6.46
7302 7945 7.412853 GTGATAAGCATGAGGTACATTTCTTG 58.587 38.462 0.00 0.00 37.07 3.02
7319 7962 4.156455 TCTTGAGTTTCTTGCCTTCACT 57.844 40.909 0.00 0.00 0.00 3.41
7391 8043 4.992319 CCATAACCGTTAGTCACTTCACAA 59.008 41.667 0.00 0.00 0.00 3.33
7434 8086 3.829601 TCACTCAGAGAAAGGAAGACTCC 59.170 47.826 3.79 0.00 42.81 3.85
7521 8173 2.158475 ACAGAGGAAACTGGCCAAATCA 60.158 45.455 7.01 0.00 44.43 2.57
7955 8607 1.902938 TTCCACGGTCATCATTTGCA 58.097 45.000 0.00 0.00 0.00 4.08
7991 8643 2.671396 CGTTTTATGTCGTCTCAAGGGG 59.329 50.000 0.00 0.00 0.00 4.79
7996 8648 1.358152 TGTCGTCTCAAGGGGGATTT 58.642 50.000 0.00 0.00 0.00 2.17
7997 8649 1.702957 TGTCGTCTCAAGGGGGATTTT 59.297 47.619 0.00 0.00 0.00 1.82
8349 9013 9.739276 TCTGGTAAACAAGATTATCATTGTTCT 57.261 29.630 16.75 12.08 46.16 3.01
8445 9109 9.588096 ACTCCTTTGTTCCTAAATATTTGTCTT 57.412 29.630 11.05 0.00 0.00 3.01
8472 9136 9.733556 TTTAGAGATTTTAAATGGACTAGCACA 57.266 29.630 0.00 0.00 0.00 4.57
8473 9137 9.905713 TTAGAGATTTTAAATGGACTAGCACAT 57.094 29.630 0.00 0.00 0.00 3.21
8475 9139 9.331282 AGAGATTTTAAATGGACTAGCACATAC 57.669 33.333 0.00 0.00 0.00 2.39
8476 9140 9.109393 GAGATTTTAAATGGACTAGCACATACA 57.891 33.333 0.00 0.00 0.00 2.29
8477 9141 9.113838 AGATTTTAAATGGACTAGCACATACAG 57.886 33.333 0.00 0.00 0.00 2.74
8478 9142 9.109393 GATTTTAAATGGACTAGCACATACAGA 57.891 33.333 0.00 0.00 0.00 3.41
8479 9143 9.632638 ATTTTAAATGGACTAGCACATACAGAT 57.367 29.630 0.69 0.00 0.00 2.90
8480 9144 8.437360 TTTAAATGGACTAGCACATACAGATG 57.563 34.615 0.69 0.00 39.16 2.90
8481 9145 3.459232 TGGACTAGCACATACAGATGC 57.541 47.619 0.00 0.00 42.39 3.91
8482 9146 2.765699 TGGACTAGCACATACAGATGCA 59.234 45.455 0.00 0.00 44.59 3.96
8483 9147 3.389002 TGGACTAGCACATACAGATGCAT 59.611 43.478 0.00 0.00 44.59 3.96
8484 9148 4.588528 TGGACTAGCACATACAGATGCATA 59.411 41.667 0.00 0.00 44.59 3.14
8485 9149 5.167121 GGACTAGCACATACAGATGCATAG 58.833 45.833 0.00 0.00 44.59 2.23
8486 9150 5.047731 GGACTAGCACATACAGATGCATAGA 60.048 44.000 0.00 0.00 44.59 1.98
8487 9151 5.777802 ACTAGCACATACAGATGCATAGAC 58.222 41.667 0.00 0.00 44.59 2.59
8488 9152 4.677673 AGCACATACAGATGCATAGACA 57.322 40.909 0.00 0.00 44.59 3.41
8489 9153 5.224821 AGCACATACAGATGCATAGACAT 57.775 39.130 0.00 0.00 44.59 3.06
8490 9154 6.350629 AGCACATACAGATGCATAGACATA 57.649 37.500 0.00 0.00 44.59 2.29
8491 9155 6.944096 AGCACATACAGATGCATAGACATAT 58.056 36.000 0.00 0.00 44.59 1.78
8492 9156 7.392418 AGCACATACAGATGCATAGACATATT 58.608 34.615 0.00 0.00 44.59 1.28
8493 9157 7.881751 AGCACATACAGATGCATAGACATATTT 59.118 33.333 0.00 0.00 44.59 1.40
8494 9158 8.509690 GCACATACAGATGCATAGACATATTTT 58.490 33.333 0.00 0.00 41.65 1.82
8500 9164 9.049523 ACAGATGCATAGACATATTTTACAGTG 57.950 33.333 0.00 0.00 0.00 3.66
8501 9165 9.049523 CAGATGCATAGACATATTTTACAGTGT 57.950 33.333 0.00 0.00 0.00 3.55
8518 9182 9.982291 TTTACAGTGTAGATTCGATTATTTTGC 57.018 29.630 2.68 0.00 0.00 3.68
8519 9183 7.849804 ACAGTGTAGATTCGATTATTTTGCT 57.150 32.000 0.00 0.00 0.00 3.91
8520 9184 7.910304 ACAGTGTAGATTCGATTATTTTGCTC 58.090 34.615 0.00 0.00 0.00 4.26
8521 9185 7.011482 ACAGTGTAGATTCGATTATTTTGCTCC 59.989 37.037 0.00 0.00 0.00 4.70
8522 9186 7.011389 CAGTGTAGATTCGATTATTTTGCTCCA 59.989 37.037 0.00 0.00 0.00 3.86
8523 9187 7.716998 AGTGTAGATTCGATTATTTTGCTCCAT 59.283 33.333 0.00 0.00 0.00 3.41
8524 9188 8.988934 GTGTAGATTCGATTATTTTGCTCCATA 58.011 33.333 0.00 0.00 0.00 2.74
8525 9189 9.725019 TGTAGATTCGATTATTTTGCTCCATAT 57.275 29.630 0.00 0.00 0.00 1.78
8538 9202 9.632638 ATTTTGCTCCATATATAGTCACTTGTT 57.367 29.630 0.00 0.00 0.00 2.83
8539 9203 8.437360 TTTGCTCCATATATAGTCACTTGTTG 57.563 34.615 0.00 0.00 0.00 3.33
8540 9204 7.360113 TGCTCCATATATAGTCACTTGTTGA 57.640 36.000 0.00 0.00 0.00 3.18
8541 9205 7.791029 TGCTCCATATATAGTCACTTGTTGAA 58.209 34.615 0.00 0.00 35.39 2.69
8542 9206 8.264347 TGCTCCATATATAGTCACTTGTTGAAA 58.736 33.333 0.00 0.00 35.39 2.69
8543 9207 9.277783 GCTCCATATATAGTCACTTGTTGAAAT 57.722 33.333 0.00 0.00 35.39 2.17
8553 9217 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
8554 9218 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
8555 9219 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
8556 9220 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
8557 9221 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
8558 9222 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
8570 9234 9.239002 CTCTAGAAAGACAAATATGTAGGAACG 57.761 37.037 0.00 0.00 40.74 3.95
8571 9235 8.195436 TCTAGAAAGACAAATATGTAGGAACGG 58.805 37.037 0.00 0.00 40.74 4.44
8572 9236 6.942976 AGAAAGACAAATATGTAGGAACGGA 58.057 36.000 0.00 0.00 40.74 4.69
8573 9237 7.042335 AGAAAGACAAATATGTAGGAACGGAG 58.958 38.462 0.00 0.00 40.74 4.63
8574 9238 5.277857 AGACAAATATGTAGGAACGGAGG 57.722 43.478 0.00 0.00 40.74 4.30
8575 9239 4.101119 AGACAAATATGTAGGAACGGAGGG 59.899 45.833 0.00 0.00 40.74 4.30
8576 9240 4.035112 ACAAATATGTAGGAACGGAGGGA 58.965 43.478 0.00 0.00 38.24 4.20
8577 9241 4.101119 ACAAATATGTAGGAACGGAGGGAG 59.899 45.833 0.00 0.00 38.24 4.30
8578 9242 3.614568 ATATGTAGGAACGGAGGGAGT 57.385 47.619 0.00 0.00 0.00 3.85
8579 9243 4.736611 ATATGTAGGAACGGAGGGAGTA 57.263 45.455 0.00 0.00 0.00 2.59
8699 11399 5.252547 TGTTGCTAACTTGCCATTCAGATA 58.747 37.500 0.00 0.00 0.00 1.98
8723 11423 2.355010 AATGCTGCTCAGGGGAATAC 57.645 50.000 0.00 0.00 0.00 1.89
8729 11429 1.826024 CTCAGGGGAATACGCAGCT 59.174 57.895 0.00 0.00 33.80 4.24
8733 11433 1.889573 GGGGAATACGCAGCTGAGC 60.890 63.158 20.43 0.85 0.00 4.26
8751 11451 1.039856 GCCCTGCTGTTTCCTTCAAA 58.960 50.000 0.00 0.00 0.00 2.69
8753 11453 2.803133 GCCCTGCTGTTTCCTTCAAAAC 60.803 50.000 0.00 0.00 39.16 2.43
8849 11553 4.829064 TGTTCAATGAAAAAGAGTCCCG 57.171 40.909 0.00 0.00 0.00 5.14
8902 11609 5.106317 ACAAAGAAGACAAGAAAACGCAGAA 60.106 36.000 0.00 0.00 0.00 3.02
8929 11637 1.190643 GCTGTCACTCCCTCTAGCTT 58.809 55.000 0.00 0.00 0.00 3.74
8934 11642 2.427812 GTCACTCCCTCTAGCTTACACC 59.572 54.545 0.00 0.00 0.00 4.16
8940 11648 2.572104 CCCTCTAGCTTACACCCACTTT 59.428 50.000 0.00 0.00 0.00 2.66
8949 11657 4.825634 GCTTACACCCACTTTAGTTTTCCT 59.174 41.667 0.00 0.00 0.00 3.36
8951 11659 3.828921 ACACCCACTTTAGTTTTCCTCC 58.171 45.455 0.00 0.00 0.00 4.30
8990 11698 3.774599 GACATCCCCCATGCCGTCC 62.775 68.421 0.00 0.00 35.65 4.79
9032 11740 2.434359 GTGGGCAGCTCGTGGTAC 60.434 66.667 0.00 0.00 0.00 3.34
9061 11769 3.120105 CAGCCTCTCCGCGATGTA 58.880 61.111 8.23 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 7.493367 GTGGCTTTATATGAGTTCACTCTAGT 58.507 38.462 8.41 0.00 43.25 2.57
33 34 7.578310 AACACTATACTCTCGTGGCTTTATA 57.422 36.000 0.00 0.00 33.13 0.98
34 35 6.466885 AACACTATACTCTCGTGGCTTTAT 57.533 37.500 0.00 0.00 33.13 1.40
40 41 5.055642 TGTGAAACACTATACTCTCGTGG 57.944 43.478 0.00 0.00 45.67 4.94
78 79 3.681593 TTTTTCGGACGGGAAGTATCA 57.318 42.857 0.00 0.00 0.00 2.15
119 120 8.571336 GCCAAGTTAATGCTAGATACATTCATT 58.429 33.333 0.00 0.00 38.62 2.57
120 121 7.095060 CGCCAAGTTAATGCTAGATACATTCAT 60.095 37.037 0.00 0.00 38.62 2.57
121 122 6.202762 CGCCAAGTTAATGCTAGATACATTCA 59.797 38.462 0.00 0.00 38.62 2.57
122 123 6.593978 CGCCAAGTTAATGCTAGATACATTC 58.406 40.000 0.00 0.00 38.62 2.67
123 124 5.049405 GCGCCAAGTTAATGCTAGATACATT 60.049 40.000 0.00 0.00 40.68 2.71
124 125 4.452455 GCGCCAAGTTAATGCTAGATACAT 59.548 41.667 0.00 0.00 0.00 2.29
125 126 3.807622 GCGCCAAGTTAATGCTAGATACA 59.192 43.478 0.00 0.00 0.00 2.29
126 127 4.058817 AGCGCCAAGTTAATGCTAGATAC 58.941 43.478 2.29 0.00 33.37 2.24
127 128 4.336889 AGCGCCAAGTTAATGCTAGATA 57.663 40.909 2.29 0.00 33.37 1.98
128 129 3.199880 AGCGCCAAGTTAATGCTAGAT 57.800 42.857 2.29 0.00 33.37 1.98
129 130 2.691409 AGCGCCAAGTTAATGCTAGA 57.309 45.000 2.29 0.00 33.37 2.43
131 132 3.812156 TCTAGCGCCAAGTTAATGCTA 57.188 42.857 2.29 3.13 37.12 3.49
132 133 2.691409 TCTAGCGCCAAGTTAATGCT 57.309 45.000 2.29 1.28 39.59 3.79
133 134 3.807622 TGTATCTAGCGCCAAGTTAATGC 59.192 43.478 2.29 0.00 0.00 3.56
134 135 6.545504 AATGTATCTAGCGCCAAGTTAATG 57.454 37.500 2.29 0.00 0.00 1.90
135 136 8.848474 ATAAATGTATCTAGCGCCAAGTTAAT 57.152 30.769 2.29 0.00 0.00 1.40
136 137 8.671384 AATAAATGTATCTAGCGCCAAGTTAA 57.329 30.769 2.29 0.00 0.00 2.01
137 138 8.556194 CAAATAAATGTATCTAGCGCCAAGTTA 58.444 33.333 2.29 0.00 0.00 2.24
138 139 7.282224 TCAAATAAATGTATCTAGCGCCAAGTT 59.718 33.333 2.29 0.00 0.00 2.66
139 140 6.765989 TCAAATAAATGTATCTAGCGCCAAGT 59.234 34.615 2.29 0.00 0.00 3.16
140 141 7.189693 TCAAATAAATGTATCTAGCGCCAAG 57.810 36.000 2.29 1.50 0.00 3.61
141 142 7.255104 CCTTCAAATAAATGTATCTAGCGCCAA 60.255 37.037 2.29 0.00 0.00 4.52
142 143 6.204688 CCTTCAAATAAATGTATCTAGCGCCA 59.795 38.462 2.29 0.00 0.00 5.69
143 144 6.426937 TCCTTCAAATAAATGTATCTAGCGCC 59.573 38.462 2.29 0.00 0.00 6.53
144 145 7.042051 TGTCCTTCAAATAAATGTATCTAGCGC 60.042 37.037 0.00 0.00 0.00 5.92
145 146 8.365399 TGTCCTTCAAATAAATGTATCTAGCG 57.635 34.615 0.00 0.00 0.00 4.26
158 159 9.243637 CGTTTGAAAAATCTTGTCCTTCAAATA 57.756 29.630 10.44 0.00 43.79 1.40
159 160 7.978975 TCGTTTGAAAAATCTTGTCCTTCAAAT 59.021 29.630 10.44 0.00 43.79 2.32
160 161 7.316640 TCGTTTGAAAAATCTTGTCCTTCAAA 58.683 30.769 4.60 4.60 41.34 2.69
161 162 6.857956 TCGTTTGAAAAATCTTGTCCTTCAA 58.142 32.000 0.00 0.00 34.95 2.69
162 163 6.443934 TCGTTTGAAAAATCTTGTCCTTCA 57.556 33.333 0.00 0.00 0.00 3.02
163 164 6.417930 CCTTCGTTTGAAAAATCTTGTCCTTC 59.582 38.462 0.00 0.00 32.66 3.46
164 165 6.273071 CCTTCGTTTGAAAAATCTTGTCCTT 58.727 36.000 0.00 0.00 32.66 3.36
165 166 5.221244 CCCTTCGTTTGAAAAATCTTGTCCT 60.221 40.000 0.00 0.00 32.66 3.85
166 167 4.982295 CCCTTCGTTTGAAAAATCTTGTCC 59.018 41.667 0.00 0.00 32.66 4.02
167 168 5.827666 TCCCTTCGTTTGAAAAATCTTGTC 58.172 37.500 0.00 0.00 32.66 3.18
168 169 5.359860 ACTCCCTTCGTTTGAAAAATCTTGT 59.640 36.000 0.00 0.00 32.66 3.16
169 170 5.831997 ACTCCCTTCGTTTGAAAAATCTTG 58.168 37.500 0.00 0.00 32.66 3.02
170 171 7.761038 ATACTCCCTTCGTTTGAAAAATCTT 57.239 32.000 0.00 0.00 32.66 2.40
175 176 9.675464 ACATTATATACTCCCTTCGTTTGAAAA 57.325 29.630 0.00 0.00 32.66 2.29
177 178 9.754382 GTACATTATATACTCCCTTCGTTTGAA 57.246 33.333 0.00 0.00 0.00 2.69
178 179 9.139734 AGTACATTATATACTCCCTTCGTTTGA 57.860 33.333 0.00 0.00 0.00 2.69
179 180 9.193133 CAGTACATTATATACTCCCTTCGTTTG 57.807 37.037 0.00 0.00 30.22 2.93
180 181 8.921205 ACAGTACATTATATACTCCCTTCGTTT 58.079 33.333 0.00 0.00 30.22 3.60
181 182 8.474710 ACAGTACATTATATACTCCCTTCGTT 57.525 34.615 0.00 0.00 30.22 3.85
182 183 9.750783 ATACAGTACATTATATACTCCCTTCGT 57.249 33.333 0.00 0.00 30.22 3.85
297 298 9.014297 CAAAGAGTCTGGTGGTTATCTTATTTT 57.986 33.333 0.00 0.00 0.00 1.82
301 302 6.681729 ACAAAGAGTCTGGTGGTTATCTTA 57.318 37.500 0.00 0.00 0.00 2.10
334 335 3.559238 AATCTGATTGTTTGTGACCGC 57.441 42.857 1.31 0.00 0.00 5.68
335 336 5.748152 ACAAAAATCTGATTGTTTGTGACCG 59.252 36.000 25.35 10.61 41.40 4.79
336 337 7.538303 AACAAAAATCTGATTGTTTGTGACC 57.462 32.000 25.97 0.00 44.91 4.02
469 507 3.526931 ATGTTGAGAGATACACGTGGG 57.473 47.619 21.57 0.00 0.00 4.61
1133 1172 4.022762 CCGACATTGTTCCAATTTACCACA 60.023 41.667 0.00 0.00 0.00 4.17
1136 1175 4.481463 CACCGACATTGTTCCAATTTACC 58.519 43.478 0.00 0.00 0.00 2.85
1227 1266 6.763135 ACCACACACAATGAACAGCTATATAG 59.237 38.462 5.30 5.30 0.00 1.31
1330 1369 3.083349 CTGCCCCCATCGTCCTCA 61.083 66.667 0.00 0.00 0.00 3.86
1341 1380 2.583143 ACTAACTGAAACAACTGCCCC 58.417 47.619 0.00 0.00 0.00 5.80
1509 1548 7.654923 CCACGAAGGTTAAAGTTACTTCTTAGT 59.345 37.037 0.00 1.62 37.71 2.24
1654 1694 3.117169 AGGAAGCATGGGCCATAAACATA 60.117 43.478 20.73 0.00 42.56 2.29
1991 2231 4.717280 AGAAACCTCGATAATTGGTCTCCT 59.283 41.667 0.00 0.00 32.98 3.69
2411 2651 9.205513 AGCAAAATCCTGTTAAATATTCCAGAT 57.794 29.630 9.94 2.40 0.00 2.90
3317 3878 4.437390 GGATGTGTGTCCAAGCTAAATTCG 60.437 45.833 0.00 0.00 38.20 3.34
3425 3988 8.554490 AATGTAGGAGTCACTTATGTCCTAAT 57.446 34.615 0.00 0.00 42.14 1.73
3430 3993 7.201565 GCTCAAAATGTAGGAGTCACTTATGTC 60.202 40.741 0.00 0.00 0.00 3.06
3434 3997 6.360370 AGCTCAAAATGTAGGAGTCACTTA 57.640 37.500 0.00 0.00 0.00 2.24
3629 4192 5.705441 TGTACAGCCATCTTAACCTGAAAAG 59.295 40.000 0.00 0.00 0.00 2.27
3788 4351 4.045636 ACACTGTTGCAAAATGGTTCTC 57.954 40.909 0.00 0.00 0.00 2.87
4046 4632 3.318839 TCCAAATGAGCCTGTTCAACAAG 59.681 43.478 0.00 0.00 0.00 3.16
4048 4634 2.886523 CTCCAAATGAGCCTGTTCAACA 59.113 45.455 0.00 0.00 33.47 3.33
4209 4795 4.328536 ACTTAGTGTCGACTCATGACTCT 58.671 43.478 17.92 5.05 41.52 3.24
4279 4865 1.225745 GCATGGTTTTCGACTCGCG 60.226 57.895 0.00 0.00 42.69 5.87
4284 4870 0.874390 TCAGCTGCATGGTTTTCGAC 59.126 50.000 9.47 0.00 0.00 4.20
4573 5159 3.059884 CAATACACCATAGCAGGCTACG 58.940 50.000 2.62 0.00 0.00 3.51
4795 5414 2.355108 GGCTGAGCTGATTCAACTACCA 60.355 50.000 3.72 0.00 0.00 3.25
4804 5423 1.934459 ATGGCCAGGCTGAGCTGATT 61.934 55.000 17.94 2.10 0.00 2.57
4988 5607 4.322499 CGGAGGGAGTACTAAACACACATT 60.322 45.833 0.00 0.00 0.00 2.71
5003 5622 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
5004 5623 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
5005 5624 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
5006 5625 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
5007 5626 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
5008 5627 3.615592 CGAGTCACTTATTTTGGGACGGA 60.616 47.826 0.00 0.00 33.84 4.69
5009 5628 2.671396 CGAGTCACTTATTTTGGGACGG 59.329 50.000 0.00 0.00 33.84 4.79
5010 5629 3.367025 GTCGAGTCACTTATTTTGGGACG 59.633 47.826 0.00 0.00 33.84 4.79
5011 5630 4.566987 AGTCGAGTCACTTATTTTGGGAC 58.433 43.478 0.00 0.00 0.00 4.46
5012 5631 4.884668 AGTCGAGTCACTTATTTTGGGA 57.115 40.909 0.00 0.00 0.00 4.37
5013 5632 5.689819 CAAAGTCGAGTCACTTATTTTGGG 58.310 41.667 0.00 0.00 35.45 4.12
5014 5633 5.147162 GCAAAGTCGAGTCACTTATTTTGG 58.853 41.667 9.63 0.00 35.45 3.28
5015 5634 5.621228 GTGCAAAGTCGAGTCACTTATTTTG 59.379 40.000 0.00 5.28 35.45 2.44
5016 5635 5.527582 AGTGCAAAGTCGAGTCACTTATTTT 59.472 36.000 7.15 0.00 35.45 1.82
5017 5636 5.057149 AGTGCAAAGTCGAGTCACTTATTT 58.943 37.500 7.15 0.00 35.45 1.40
5018 5637 4.632153 AGTGCAAAGTCGAGTCACTTATT 58.368 39.130 7.15 0.00 35.45 1.40
5019 5638 4.258702 AGTGCAAAGTCGAGTCACTTAT 57.741 40.909 7.15 0.00 35.45 1.73
5020 5639 3.728076 AGTGCAAAGTCGAGTCACTTA 57.272 42.857 7.15 0.00 35.45 2.24
5021 5640 2.604046 AGTGCAAAGTCGAGTCACTT 57.396 45.000 7.15 3.11 38.30 3.16
5022 5641 3.068307 AGTTAGTGCAAAGTCGAGTCACT 59.932 43.478 15.12 15.12 40.60 3.41
5023 5642 3.381949 AGTTAGTGCAAAGTCGAGTCAC 58.618 45.455 0.00 0.00 0.00 3.67
5024 5643 3.318275 AGAGTTAGTGCAAAGTCGAGTCA 59.682 43.478 0.00 0.00 34.58 3.41
5025 5644 3.670991 CAGAGTTAGTGCAAAGTCGAGTC 59.329 47.826 0.00 0.00 34.58 3.36
5026 5645 3.068307 ACAGAGTTAGTGCAAAGTCGAGT 59.932 43.478 0.00 0.00 34.58 4.18
5027 5646 3.643763 ACAGAGTTAGTGCAAAGTCGAG 58.356 45.455 0.00 0.00 34.58 4.04
5028 5647 3.728076 ACAGAGTTAGTGCAAAGTCGA 57.272 42.857 0.00 0.00 34.58 4.20
5029 5648 4.547532 AGTACAGAGTTAGTGCAAAGTCG 58.452 43.478 0.00 0.00 34.58 4.18
5030 5649 7.941795 TTTAGTACAGAGTTAGTGCAAAGTC 57.058 36.000 0.00 0.00 0.00 3.01
5031 5650 8.904099 ATTTTAGTACAGAGTTAGTGCAAAGT 57.096 30.769 0.00 0.00 0.00 2.66
5034 5653 9.991906 ACTAATTTTAGTACAGAGTTAGTGCAA 57.008 29.630 1.15 0.00 41.92 4.08
5035 5654 9.419297 CACTAATTTTAGTACAGAGTTAGTGCA 57.581 33.333 17.24 0.00 41.82 4.57
5036 5655 9.420551 ACACTAATTTTAGTACAGAGTTAGTGC 57.579 33.333 23.09 0.00 45.50 4.40
5058 5677 8.548721 CGAAAATAAGTGACTCAACTTTACACT 58.451 33.333 0.00 0.00 40.77 3.55
5059 5678 7.797123 CCGAAAATAAGTGACTCAACTTTACAC 59.203 37.037 0.00 0.00 40.77 2.90
5060 5679 7.711772 TCCGAAAATAAGTGACTCAACTTTACA 59.288 33.333 0.00 0.00 40.77 2.41
5061 5680 8.008279 GTCCGAAAATAAGTGACTCAACTTTAC 58.992 37.037 0.00 0.00 40.77 2.01
5062 5681 7.095940 CGTCCGAAAATAAGTGACTCAACTTTA 60.096 37.037 0.00 0.00 40.77 1.85
5063 5682 6.292703 CGTCCGAAAATAAGTGACTCAACTTT 60.293 38.462 0.00 0.00 40.77 2.66
5064 5683 5.176958 CGTCCGAAAATAAGTGACTCAACTT 59.823 40.000 0.00 0.00 42.89 2.66
5065 5684 4.684703 CGTCCGAAAATAAGTGACTCAACT 59.315 41.667 0.00 0.00 0.00 3.16
5066 5685 4.143179 CCGTCCGAAAATAAGTGACTCAAC 60.143 45.833 0.00 0.00 0.00 3.18
5067 5686 3.991773 CCGTCCGAAAATAAGTGACTCAA 59.008 43.478 0.00 0.00 0.00 3.02
5068 5687 3.256383 TCCGTCCGAAAATAAGTGACTCA 59.744 43.478 0.00 0.00 0.00 3.41
5069 5688 3.841643 TCCGTCCGAAAATAAGTGACTC 58.158 45.455 0.00 0.00 0.00 3.36
5070 5689 3.368116 CCTCCGTCCGAAAATAAGTGACT 60.368 47.826 0.00 0.00 0.00 3.41
5071 5690 2.928116 CCTCCGTCCGAAAATAAGTGAC 59.072 50.000 0.00 0.00 0.00 3.67
5072 5691 2.093869 CCCTCCGTCCGAAAATAAGTGA 60.094 50.000 0.00 0.00 0.00 3.41
5073 5692 2.093869 TCCCTCCGTCCGAAAATAAGTG 60.094 50.000 0.00 0.00 0.00 3.16
5074 5693 2.167900 CTCCCTCCGTCCGAAAATAAGT 59.832 50.000 0.00 0.00 0.00 2.24
5075 5694 2.167900 ACTCCCTCCGTCCGAAAATAAG 59.832 50.000 0.00 0.00 0.00 1.73
5076 5695 2.181975 ACTCCCTCCGTCCGAAAATAA 58.818 47.619 0.00 0.00 0.00 1.40
5077 5696 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
5078 5697 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
5079 5698 1.273327 GTTACTCCCTCCGTCCGAAAA 59.727 52.381 0.00 0.00 0.00 2.29
5080 5699 0.890683 GTTACTCCCTCCGTCCGAAA 59.109 55.000 0.00 0.00 0.00 3.46
5081 5700 0.038744 AGTTACTCCCTCCGTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
5082 5701 0.393537 GAGTTACTCCCTCCGTCCGA 60.394 60.000 0.00 0.00 0.00 4.55
5083 5702 0.679002 TGAGTTACTCCCTCCGTCCG 60.679 60.000 10.10 0.00 0.00 4.79
5084 5703 1.777941 ATGAGTTACTCCCTCCGTCC 58.222 55.000 10.10 0.00 0.00 4.79
5085 5704 3.318557 CCTTATGAGTTACTCCCTCCGTC 59.681 52.174 10.10 0.00 0.00 4.79
5086 5705 3.297736 CCTTATGAGTTACTCCCTCCGT 58.702 50.000 10.10 0.00 0.00 4.69
5087 5706 3.068307 CACCTTATGAGTTACTCCCTCCG 59.932 52.174 10.10 0.00 0.00 4.63
5088 5707 4.031611 ACACCTTATGAGTTACTCCCTCC 58.968 47.826 10.10 0.00 0.00 4.30
5089 5708 6.786967 TTACACCTTATGAGTTACTCCCTC 57.213 41.667 10.10 0.00 0.00 4.30
5090 5709 6.901300 TCATTACACCTTATGAGTTACTCCCT 59.099 38.462 10.10 0.00 0.00 4.20
5091 5710 7.120923 TCATTACACCTTATGAGTTACTCCC 57.879 40.000 10.10 0.00 0.00 4.30
5092 5711 8.421784 TGATCATTACACCTTATGAGTTACTCC 58.578 37.037 10.10 0.00 34.52 3.85
5093 5712 9.988815 ATGATCATTACACCTTATGAGTTACTC 57.011 33.333 1.18 5.27 34.52 2.59
5094 5713 9.770097 CATGATCATTACACCTTATGAGTTACT 57.230 33.333 5.16 0.00 34.52 2.24
5115 5734 3.041946 GGACTCCTCCTGGTTACATGAT 58.958 50.000 0.00 0.00 33.07 2.45
5131 5750 3.288964 TCAGATCCCTCTTTACGGACTC 58.711 50.000 0.00 0.00 0.00 3.36
5132 5751 3.383698 TCAGATCCCTCTTTACGGACT 57.616 47.619 0.00 0.00 0.00 3.85
5133 5752 3.181474 CCTTCAGATCCCTCTTTACGGAC 60.181 52.174 0.00 0.00 0.00 4.79
5299 5918 4.803088 GCAACAAATAACAGCAACAACAGA 59.197 37.500 0.00 0.00 0.00 3.41
5300 5919 4.565962 TGCAACAAATAACAGCAACAACAG 59.434 37.500 0.00 0.00 31.42 3.16
5468 6090 6.380995 TGCTGACATTTGCTTAATTACACTG 58.619 36.000 0.00 0.00 0.00 3.66
5486 6108 2.677337 GGCTTCTCTGAGATTTGCTGAC 59.323 50.000 19.56 7.05 0.00 3.51
5495 6117 6.620877 TTTAATAAGTGGGCTTCTCTGAGA 57.379 37.500 2.58 2.58 36.22 3.27
5499 6121 7.724061 TGAAAGTTTTAATAAGTGGGCTTCTCT 59.276 33.333 0.00 0.00 36.22 3.10
5593 6215 9.150348 CTTTCAAAAACTAGAGAGGAAGAGATC 57.850 37.037 0.00 0.00 0.00 2.75
5594 6216 7.606073 GCTTTCAAAAACTAGAGAGGAAGAGAT 59.394 37.037 0.00 0.00 0.00 2.75
5624 6246 4.142881 GGACTGCCGTGAAAATAGAAACTC 60.143 45.833 0.00 0.00 0.00 3.01
5633 6255 0.736053 GTGTTGGACTGCCGTGAAAA 59.264 50.000 0.00 0.00 36.79 2.29
6012 6639 5.524284 AGTGTTCGATACATCTGCATCTAC 58.476 41.667 0.00 0.00 39.39 2.59
6082 6709 2.363018 CGCTCTCCCTCTGTCCCA 60.363 66.667 0.00 0.00 0.00 4.37
6098 6726 0.938713 TTTTAGTTGTGGTGCGACCG 59.061 50.000 0.00 0.00 42.58 4.79
6356 6986 9.768662 ATATTTCATGAAAATTACCTCATTGGC 57.231 29.630 23.91 0.00 38.53 4.52
6396 7026 4.097892 ACTTCATATCAAACGCCCCAAATC 59.902 41.667 0.00 0.00 0.00 2.17
6400 7030 2.799126 ACTTCATATCAAACGCCCCA 57.201 45.000 0.00 0.00 0.00 4.96
6411 7041 9.927081 AGTGATTTCCTTGGAAATACTTCATAT 57.073 29.630 22.92 10.91 35.18 1.78
6649 7287 2.350484 CGCGCTCTCCGATAGTAATTCA 60.350 50.000 5.56 0.00 40.02 2.57
7033 7674 5.368145 GGAGCAGACAATATGGTGTTGATA 58.632 41.667 0.00 0.00 0.00 2.15
7248 7891 3.201290 GCGTGAGAATGATCCATCACTT 58.799 45.455 12.16 0.00 40.03 3.16
7273 7916 4.513442 TGTACCTCATGCTTATCACCAAC 58.487 43.478 0.00 0.00 0.00 3.77
7302 7945 4.009370 AGGTAGTGAAGGCAAGAAACTC 57.991 45.455 0.00 0.00 0.00 3.01
7391 8043 7.773149 AGTGAGTTAGCTAGTCGACATTATTT 58.227 34.615 19.50 0.00 0.00 1.40
7434 8086 2.369394 GGAGCAAATTACCAGGTCAGG 58.631 52.381 0.00 0.00 0.00 3.86
7521 8173 1.743995 CTTCGTTTTCGGGGGCGAT 60.744 57.895 0.00 0.00 44.25 4.58
7673 8325 3.804873 GCTTAGTGTCAGCTATAGTTGCC 59.195 47.826 11.47 1.06 34.15 4.52
7991 8643 5.294356 ACCGCTTGGTAAAAAGAAAAATCC 58.706 37.500 0.00 0.00 46.86 3.01
8070 8730 0.042131 ATTGGACCTCCTACACCCGA 59.958 55.000 0.00 0.00 36.82 5.14
8349 9013 3.140144 AGGACAACAATTCCTCCTTTCCA 59.860 43.478 0.00 0.00 39.47 3.53
8446 9110 9.733556 TGTGCTAGTCCATTTAAAATCTCTAAA 57.266 29.630 0.00 0.00 0.00 1.85
8447 9111 9.905713 ATGTGCTAGTCCATTTAAAATCTCTAA 57.094 29.630 0.00 0.00 0.00 2.10
8449 9113 9.331282 GTATGTGCTAGTCCATTTAAAATCTCT 57.669 33.333 0.00 0.00 0.00 3.10
8450 9114 9.109393 TGTATGTGCTAGTCCATTTAAAATCTC 57.891 33.333 0.00 0.00 0.00 2.75
8451 9115 9.113838 CTGTATGTGCTAGTCCATTTAAAATCT 57.886 33.333 0.00 0.00 0.00 2.40
8452 9116 9.109393 TCTGTATGTGCTAGTCCATTTAAAATC 57.891 33.333 0.00 0.00 0.00 2.17
8453 9117 9.632638 ATCTGTATGTGCTAGTCCATTTAAAAT 57.367 29.630 0.00 0.00 0.00 1.82
8454 9118 8.892723 CATCTGTATGTGCTAGTCCATTTAAAA 58.107 33.333 0.00 0.00 0.00 1.52
8455 9119 7.012327 GCATCTGTATGTGCTAGTCCATTTAAA 59.988 37.037 0.00 0.00 38.30 1.52
8456 9120 6.483307 GCATCTGTATGTGCTAGTCCATTTAA 59.517 38.462 2.28 0.00 38.30 1.52
8457 9121 5.991606 GCATCTGTATGTGCTAGTCCATTTA 59.008 40.000 2.28 0.00 38.30 1.40
8458 9122 4.818546 GCATCTGTATGTGCTAGTCCATTT 59.181 41.667 2.28 0.00 38.30 2.32
8459 9123 4.141642 TGCATCTGTATGTGCTAGTCCATT 60.142 41.667 2.28 0.00 41.78 3.16
8460 9124 3.389002 TGCATCTGTATGTGCTAGTCCAT 59.611 43.478 0.00 0.00 41.78 3.41
8461 9125 2.765699 TGCATCTGTATGTGCTAGTCCA 59.234 45.455 0.00 0.00 41.78 4.02
8462 9126 3.459232 TGCATCTGTATGTGCTAGTCC 57.541 47.619 0.00 0.00 41.78 3.85
8463 9127 5.861251 GTCTATGCATCTGTATGTGCTAGTC 59.139 44.000 0.19 0.00 41.78 2.59
8464 9128 5.302823 TGTCTATGCATCTGTATGTGCTAGT 59.697 40.000 0.19 0.00 41.78 2.57
8465 9129 5.776744 TGTCTATGCATCTGTATGTGCTAG 58.223 41.667 0.19 0.00 41.78 3.42
8466 9130 5.789643 TGTCTATGCATCTGTATGTGCTA 57.210 39.130 0.19 0.00 41.78 3.49
8467 9131 4.677673 TGTCTATGCATCTGTATGTGCT 57.322 40.909 0.19 0.00 41.78 4.40
8468 9132 7.606858 AATATGTCTATGCATCTGTATGTGC 57.393 36.000 0.19 0.00 41.61 4.57
8474 9138 9.049523 CACTGTAAAATATGTCTATGCATCTGT 57.950 33.333 0.19 0.00 0.00 3.41
8475 9139 9.049523 ACACTGTAAAATATGTCTATGCATCTG 57.950 33.333 0.19 0.00 0.00 2.90
8492 9156 9.982291 GCAAAATAATCGAATCTACACTGTAAA 57.018 29.630 0.00 0.00 0.00 2.01
8493 9157 9.378551 AGCAAAATAATCGAATCTACACTGTAA 57.621 29.630 0.00 0.00 0.00 2.41
8494 9158 8.942338 AGCAAAATAATCGAATCTACACTGTA 57.058 30.769 0.00 0.00 0.00 2.74
8495 9159 7.011482 GGAGCAAAATAATCGAATCTACACTGT 59.989 37.037 0.00 0.00 0.00 3.55
8496 9160 7.011389 TGGAGCAAAATAATCGAATCTACACTG 59.989 37.037 0.00 0.00 0.00 3.66
8497 9161 7.047891 TGGAGCAAAATAATCGAATCTACACT 58.952 34.615 0.00 0.00 0.00 3.55
8498 9162 7.246674 TGGAGCAAAATAATCGAATCTACAC 57.753 36.000 0.00 0.00 0.00 2.90
8499 9163 9.725019 ATATGGAGCAAAATAATCGAATCTACA 57.275 29.630 0.00 0.00 0.00 2.74
8512 9176 9.632638 AACAAGTGACTATATATGGAGCAAAAT 57.367 29.630 2.68 0.00 0.00 1.82
8513 9177 8.892723 CAACAAGTGACTATATATGGAGCAAAA 58.107 33.333 2.68 0.00 0.00 2.44
8514 9178 8.264347 TCAACAAGTGACTATATATGGAGCAAA 58.736 33.333 2.68 0.00 0.00 3.68
8515 9179 7.791029 TCAACAAGTGACTATATATGGAGCAA 58.209 34.615 2.68 0.00 0.00 3.91
8516 9180 7.360113 TCAACAAGTGACTATATATGGAGCA 57.640 36.000 2.68 0.00 0.00 4.26
8517 9181 8.662781 TTTCAACAAGTGACTATATATGGAGC 57.337 34.615 2.68 0.00 35.39 4.70
8527 9191 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
8528 9192 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
8529 9193 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
8530 9194 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
8531 9195 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
8532 9196 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
8544 9208 9.239002 CGTTCCTACATATTTGTCTTTCTAGAG 57.761 37.037 0.00 0.00 37.28 2.43
8545 9209 8.195436 CCGTTCCTACATATTTGTCTTTCTAGA 58.805 37.037 0.00 0.00 37.28 2.43
8546 9210 8.195436 TCCGTTCCTACATATTTGTCTTTCTAG 58.805 37.037 0.00 0.00 37.28 2.43
8547 9211 8.070034 TCCGTTCCTACATATTTGTCTTTCTA 57.930 34.615 0.00 0.00 37.28 2.10
8548 9212 6.942976 TCCGTTCCTACATATTTGTCTTTCT 58.057 36.000 0.00 0.00 37.28 2.52
8549 9213 6.258068 CCTCCGTTCCTACATATTTGTCTTTC 59.742 42.308 0.00 0.00 37.28 2.62
8550 9214 6.113411 CCTCCGTTCCTACATATTTGTCTTT 58.887 40.000 0.00 0.00 37.28 2.52
8551 9215 5.396436 CCCTCCGTTCCTACATATTTGTCTT 60.396 44.000 0.00 0.00 37.28 3.01
8552 9216 4.101119 CCCTCCGTTCCTACATATTTGTCT 59.899 45.833 0.00 0.00 37.28 3.41
8553 9217 4.100498 TCCCTCCGTTCCTACATATTTGTC 59.900 45.833 0.00 0.00 37.28 3.18
8554 9218 4.035112 TCCCTCCGTTCCTACATATTTGT 58.965 43.478 0.00 0.00 39.98 2.83
8555 9219 4.101119 ACTCCCTCCGTTCCTACATATTTG 59.899 45.833 0.00 0.00 0.00 2.32
8556 9220 4.296056 ACTCCCTCCGTTCCTACATATTT 58.704 43.478 0.00 0.00 0.00 1.40
8557 9221 3.924922 ACTCCCTCCGTTCCTACATATT 58.075 45.455 0.00 0.00 0.00 1.28
8558 9222 3.614568 ACTCCCTCCGTTCCTACATAT 57.385 47.619 0.00 0.00 0.00 1.78
8559 9223 3.461085 ACTACTCCCTCCGTTCCTACATA 59.539 47.826 0.00 0.00 0.00 2.29
8560 9224 2.244252 ACTACTCCCTCCGTTCCTACAT 59.756 50.000 0.00 0.00 0.00 2.29
8561 9225 1.637553 ACTACTCCCTCCGTTCCTACA 59.362 52.381 0.00 0.00 0.00 2.74
8562 9226 2.433662 ACTACTCCCTCCGTTCCTAC 57.566 55.000 0.00 0.00 0.00 3.18
8563 9227 2.309755 TGAACTACTCCCTCCGTTCCTA 59.690 50.000 0.00 0.00 35.97 2.94
8564 9228 1.076677 TGAACTACTCCCTCCGTTCCT 59.923 52.381 0.00 0.00 35.97 3.36
8565 9229 1.553706 TGAACTACTCCCTCCGTTCC 58.446 55.000 0.00 0.00 35.97 3.62
8566 9230 3.522553 CAATGAACTACTCCCTCCGTTC 58.477 50.000 0.00 0.00 37.02 3.95
8567 9231 2.354805 GCAATGAACTACTCCCTCCGTT 60.355 50.000 0.00 0.00 0.00 4.44
8568 9232 1.207329 GCAATGAACTACTCCCTCCGT 59.793 52.381 0.00 0.00 0.00 4.69
8569 9233 1.207089 TGCAATGAACTACTCCCTCCG 59.793 52.381 0.00 0.00 0.00 4.63
8570 9234 3.350219 TTGCAATGAACTACTCCCTCC 57.650 47.619 0.00 0.00 0.00 4.30
8571 9235 5.003804 TCTTTTGCAATGAACTACTCCCTC 58.996 41.667 0.00 0.00 0.00 4.30
8572 9236 4.985538 TCTTTTGCAATGAACTACTCCCT 58.014 39.130 0.00 0.00 0.00 4.20
8573 9237 5.393461 CCATCTTTTGCAATGAACTACTCCC 60.393 44.000 0.00 0.00 0.00 4.30
8574 9238 5.183904 ACCATCTTTTGCAATGAACTACTCC 59.816 40.000 0.00 0.00 0.00 3.85
8575 9239 6.259550 ACCATCTTTTGCAATGAACTACTC 57.740 37.500 0.00 0.00 0.00 2.59
8576 9240 7.230510 TGTTACCATCTTTTGCAATGAACTACT 59.769 33.333 0.00 0.00 0.00 2.57
8577 9241 7.367285 TGTTACCATCTTTTGCAATGAACTAC 58.633 34.615 0.00 0.02 0.00 2.73
8578 9242 7.517614 TGTTACCATCTTTTGCAATGAACTA 57.482 32.000 0.00 0.00 0.00 2.24
8579 9243 6.403866 TGTTACCATCTTTTGCAATGAACT 57.596 33.333 0.00 0.00 0.00 3.01
8620 9287 7.012327 TGGTATTTTTAGAATCAGGAATGAGCG 59.988 37.037 0.00 0.00 0.00 5.03
8655 9322 7.095523 GCAACAAAATCAGCAATACATGAGTTT 60.096 33.333 0.00 0.00 42.52 2.66
8699 11399 1.639635 CCCCTGAGCAGCATTACCCT 61.640 60.000 0.00 0.00 0.00 4.34
8729 11429 0.250901 GAAGGAAACAGCAGGGCTCA 60.251 55.000 0.00 0.00 36.40 4.26
8733 11433 2.430332 TGTTTTGAAGGAAACAGCAGGG 59.570 45.455 0.00 0.00 42.73 4.45
8775 11475 5.880332 TGACAATAACTCCATGCCTAGTTTC 59.120 40.000 10.41 4.79 37.19 2.78
8873 11577 7.064847 TGCGTTTTCTTGTCTTCTTTGTACTAA 59.935 33.333 0.00 0.00 0.00 2.24
8902 11609 0.320771 GGGAGTGACAGCGATGTTGT 60.321 55.000 8.15 0.00 0.00 3.32
8929 11637 4.412858 TGGAGGAAAACTAAAGTGGGTGTA 59.587 41.667 0.00 0.00 0.00 2.90
8934 11642 3.486383 TGCTGGAGGAAAACTAAAGTGG 58.514 45.455 0.00 0.00 0.00 4.00
8940 11648 2.677902 CGATGCTGCTGGAGGAAAACTA 60.678 50.000 0.00 0.00 0.00 2.24
8949 11657 1.953231 CTCAGGACGATGCTGCTGGA 61.953 60.000 0.00 0.00 35.65 3.86
8951 11659 1.521010 CCTCAGGACGATGCTGCTG 60.521 63.158 0.00 0.00 35.65 4.41
8990 11698 4.796231 CACCTCTTCCCCGTCGCG 62.796 72.222 0.00 0.00 0.00 5.87
9061 11769 4.430765 CCGTTAGCCTGTCGCGGT 62.431 66.667 6.13 0.00 44.76 5.68
9107 11815 2.900273 GAGGCGGATGTGCACCTA 59.100 61.111 15.69 0.00 36.28 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.