Multiple sequence alignment - TraesCS6B01G190100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G190100 chr6B 100.000 3334 0 0 1 3334 222586609 222589942 0.000000e+00 6157.0
1 TraesCS6B01G190100 chr6B 89.888 89 8 1 740 828 204856640 204856553 2.720000e-21 113.0
2 TraesCS6B01G190100 chr6A 92.720 1717 86 19 865 2551 156208888 156207181 0.000000e+00 2442.0
3 TraesCS6B01G190100 chr6A 85.981 107 11 3 2969 3074 499867985 499868088 9.780000e-21 111.0
4 TraesCS6B01G190100 chr6D 96.387 1467 46 3 897 2363 124897312 124898771 0.000000e+00 2409.0
5 TraesCS6B01G190100 chr6D 84.101 434 55 14 2602 3029 239042123 239042548 1.110000e-109 407.0
6 TraesCS6B01G190100 chr6D 77.036 749 128 31 2602 3321 225659753 225659020 1.120000e-104 390.0
7 TraesCS6B01G190100 chr6D 81.944 216 7 9 2355 2547 124898918 124899124 1.600000e-33 154.0
8 TraesCS6B01G190100 chr4B 92.322 547 28 7 11 548 13101225 13101766 0.000000e+00 765.0
9 TraesCS6B01G190100 chr4B 78.561 681 106 32 2602 3266 116879942 116879286 2.390000e-111 412.0
10 TraesCS6B01G190100 chr4B 82.746 284 38 3 3061 3334 320067412 320067130 3.320000e-60 243.0
11 TraesCS6B01G190100 chr4B 88.482 191 21 1 3145 3334 334263307 334263497 2.590000e-56 230.0
12 TraesCS6B01G190100 chr7D 86.611 478 55 9 2602 3075 294210323 294209851 1.370000e-143 520.0
13 TraesCS6B01G190100 chr7D 80.542 627 90 21 2626 3230 619758962 619758346 1.410000e-123 453.0
14 TraesCS6B01G190100 chr7D 85.861 389 48 7 2602 2986 294499863 294499478 1.110000e-109 407.0
15 TraesCS6B01G190100 chr7B 79.973 734 96 41 2626 3334 468402517 468403224 8.310000e-136 494.0
16 TraesCS6B01G190100 chr7B 78.933 750 98 40 2626 3334 468295554 468296284 3.920000e-124 455.0
17 TraesCS6B01G190100 chr7B 82.873 181 31 0 560 740 544238706 544238886 2.660000e-36 163.0
18 TraesCS6B01G190100 chr3B 87.218 399 43 8 2602 2996 257322671 257323065 6.560000e-122 448.0
19 TraesCS6B01G190100 chr3B 77.341 737 113 47 2602 3322 433596498 433595800 1.450000e-103 387.0
20 TraesCS6B01G190100 chr3B 88.372 86 7 3 743 828 252666585 252666503 2.120000e-17 100.0
21 TraesCS6B01G190100 chr1D 78.618 767 94 43 2626 3334 118934425 118935179 8.490000e-121 444.0
22 TraesCS6B01G190100 chr1D 86.010 386 46 8 2602 2983 205459183 205458802 1.110000e-109 407.0
23 TraesCS6B01G190100 chr1D 88.764 89 9 1 740 828 200308066 200307979 1.260000e-19 108.0
24 TraesCS6B01G190100 chr1B 77.939 757 101 42 2626 3332 172845728 172846468 2.390000e-111 412.0
25 TraesCS6B01G190100 chrUn 82.571 459 63 17 2602 3052 61794785 61794336 4.030000e-104 388.0
26 TraesCS6B01G190100 chr5D 83.028 436 61 13 2626 3055 458087579 458088007 1.880000e-102 383.0
27 TraesCS6B01G190100 chr4D 80.422 521 73 24 2822 3334 264622699 264623198 1.460000e-98 370.0
28 TraesCS6B01G190100 chr4D 88.764 89 9 1 740 828 136469809 136469722 1.260000e-19 108.0
29 TraesCS6B01G190100 chr2B 80.619 485 74 18 2602 3075 191834386 191833911 1.140000e-94 357.0
30 TraesCS6B01G190100 chr2B 80.537 447 53 23 2660 3075 237468904 237468461 2.500000e-81 313.0
31 TraesCS6B01G190100 chr2B 93.750 64 4 0 2967 3030 55192201 55192264 2.740000e-16 97.1
32 TraesCS6B01G190100 chr3D 76.716 743 108 50 2626 3334 424241134 424240423 1.470000e-93 353.0
33 TraesCS6B01G190100 chr1A 88.660 194 21 1 3142 3334 120134343 120134536 5.560000e-58 235.0
34 TraesCS6B01G190100 chr1A 86.813 91 11 1 740 830 567457194 567457283 2.120000e-17 100.0
35 TraesCS6B01G190100 chr2D 85.926 135 19 0 601 735 571192810 571192944 9.640000e-31 145.0
36 TraesCS6B01G190100 chr2D 73.759 282 56 12 3064 3332 277968036 277967760 9.850000e-16 95.3
37 TraesCS6B01G190100 chr2A 90.361 83 7 1 740 822 733414320 733414239 1.260000e-19 108.0
38 TraesCS6B01G190100 chr2A 87.912 91 7 3 744 831 189381941 189381852 1.640000e-18 104.0
39 TraesCS6B01G190100 chr4A 88.764 89 6 2 740 828 666643309 666643225 4.550000e-19 106.0
40 TraesCS6B01G190100 chr4A 88.235 85 9 1 746 830 552260013 552259930 2.120000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G190100 chr6B 222586609 222589942 3333 False 6157.0 6157 100.0000 1 3334 1 chr6B.!!$F1 3333
1 TraesCS6B01G190100 chr6A 156207181 156208888 1707 True 2442.0 2442 92.7200 865 2551 1 chr6A.!!$R1 1686
2 TraesCS6B01G190100 chr6D 124897312 124899124 1812 False 1281.5 2409 89.1655 897 2547 2 chr6D.!!$F2 1650
3 TraesCS6B01G190100 chr6D 225659020 225659753 733 True 390.0 390 77.0360 2602 3321 1 chr6D.!!$R1 719
4 TraesCS6B01G190100 chr4B 13101225 13101766 541 False 765.0 765 92.3220 11 548 1 chr4B.!!$F1 537
5 TraesCS6B01G190100 chr4B 116879286 116879942 656 True 412.0 412 78.5610 2602 3266 1 chr4B.!!$R1 664
6 TraesCS6B01G190100 chr7D 619758346 619758962 616 True 453.0 453 80.5420 2626 3230 1 chr7D.!!$R3 604
7 TraesCS6B01G190100 chr7B 468402517 468403224 707 False 494.0 494 79.9730 2626 3334 1 chr7B.!!$F2 708
8 TraesCS6B01G190100 chr7B 468295554 468296284 730 False 455.0 455 78.9330 2626 3334 1 chr7B.!!$F1 708
9 TraesCS6B01G190100 chr3B 433595800 433596498 698 True 387.0 387 77.3410 2602 3322 1 chr3B.!!$R2 720
10 TraesCS6B01G190100 chr1D 118934425 118935179 754 False 444.0 444 78.6180 2626 3334 1 chr1D.!!$F1 708
11 TraesCS6B01G190100 chr1B 172845728 172846468 740 False 412.0 412 77.9390 2626 3332 1 chr1B.!!$F1 706
12 TraesCS6B01G190100 chr3D 424240423 424241134 711 True 353.0 353 76.7160 2626 3334 1 chr3D.!!$R1 708

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
519 529 0.034767 ACCAGTAGATCGGACGGACA 60.035 55.0 14.04 0.0 0.0 4.02 F
672 682 0.096976 GGTGATGATTGGTTCGTGCG 59.903 55.0 0.00 0.0 0.0 5.34 F
683 693 0.110373 GTTCGTGCGATTTGTGGGAC 60.110 55.0 0.00 0.0 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1579 1594 0.764890 TGAGCACCATATGGGGTAGC 59.235 55.000 24.97 20.76 41.84 3.58 R
1708 1723 0.960364 GAAACAGCCGAGGCCATTGA 60.960 55.000 10.95 0.00 43.17 2.57 R
2551 2757 1.135803 CACCCTACAACAATTTCGCCG 60.136 52.381 0.00 0.00 0.00 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.742433 ATGCGTCCATTGGTTGAAAAA 57.258 38.095 1.86 0.00 0.00 1.94
51 52 5.779241 TCATCAATAACTTCCAGGGAGTT 57.221 39.130 17.96 17.96 0.00 3.01
71 72 5.852827 AGTTTGACAAATGTTGGGTTATGG 58.147 37.500 3.49 0.00 34.12 2.74
245 255 7.639062 ATCAGGGAGTATGTTGGAGATTTAT 57.361 36.000 0.00 0.00 0.00 1.40
248 258 4.691216 GGGAGTATGTTGGAGATTTATCGC 59.309 45.833 0.00 0.00 0.00 4.58
252 262 7.766278 GGAGTATGTTGGAGATTTATCGCATAT 59.234 37.037 0.00 0.00 0.00 1.78
278 288 3.007398 GGAAGCATCATCTACGGGATTCT 59.993 47.826 0.00 0.00 31.27 2.40
286 296 5.205821 TCATCTACGGGATTCTGTTTCCTA 58.794 41.667 0.00 0.00 33.86 2.94
295 305 7.499232 ACGGGATTCTGTTTCCTAAAATATCAG 59.501 37.037 0.00 0.00 33.53 2.90
358 368 4.822896 TGCTTGAATTTGGTAACCTAACGT 59.177 37.500 0.00 0.00 0.00 3.99
360 370 5.049267 GCTTGAATTTGGTAACCTAACGTGA 60.049 40.000 0.00 0.00 0.00 4.35
361 371 6.349033 GCTTGAATTTGGTAACCTAACGTGAT 60.349 38.462 0.00 0.00 0.00 3.06
410 420 5.286267 ACGTTCTAGGGAGAAAGAAACAA 57.714 39.130 7.48 0.00 43.38 2.83
456 466 1.218316 GGTTGCGGGAGTAGTGAGG 59.782 63.158 0.00 0.00 0.00 3.86
517 527 1.843368 AAACCAGTAGATCGGACGGA 58.157 50.000 14.04 0.00 0.00 4.69
519 529 0.034767 ACCAGTAGATCGGACGGACA 60.035 55.000 14.04 0.00 0.00 4.02
548 558 9.125026 CTGTTTCTAATCCAATGGCTAATAACT 57.875 33.333 0.00 0.00 0.00 2.24
558 568 9.609346 TCCAATGGCTAATAACTACTTAGAAAC 57.391 33.333 0.00 0.00 0.00 2.78
559 569 9.391006 CCAATGGCTAATAACTACTTAGAAACA 57.609 33.333 0.00 0.00 0.00 2.83
564 574 9.230932 GGCTAATAACTACTTAGAAACAGTACG 57.769 37.037 0.00 0.00 0.00 3.67
565 575 9.230932 GCTAATAACTACTTAGAAACAGTACGG 57.769 37.037 0.00 0.00 0.00 4.02
568 578 6.639632 AACTACTTAGAAACAGTACGGTCA 57.360 37.500 0.00 0.00 0.00 4.02
569 579 6.251655 ACTACTTAGAAACAGTACGGTCAG 57.748 41.667 0.00 0.00 0.00 3.51
570 580 3.910648 ACTTAGAAACAGTACGGTCAGC 58.089 45.455 0.00 0.00 0.00 4.26
571 581 3.251571 CTTAGAAACAGTACGGTCAGCC 58.748 50.000 0.00 0.00 0.00 4.85
572 582 1.045407 AGAAACAGTACGGTCAGCCA 58.955 50.000 0.00 0.00 34.09 4.75
573 583 1.623811 AGAAACAGTACGGTCAGCCAT 59.376 47.619 0.00 0.00 34.09 4.40
574 584 2.038557 AGAAACAGTACGGTCAGCCATT 59.961 45.455 0.00 0.00 34.09 3.16
575 585 1.808411 AACAGTACGGTCAGCCATTG 58.192 50.000 0.00 0.00 34.09 2.82
576 586 0.973632 ACAGTACGGTCAGCCATTGA 59.026 50.000 0.00 0.00 34.09 2.57
577 587 1.346395 ACAGTACGGTCAGCCATTGAA 59.654 47.619 0.00 0.00 37.61 2.69
578 588 2.224426 ACAGTACGGTCAGCCATTGAAA 60.224 45.455 0.00 0.00 37.61 2.69
579 589 3.009723 CAGTACGGTCAGCCATTGAAAT 58.990 45.455 0.00 0.00 37.61 2.17
580 590 3.440173 CAGTACGGTCAGCCATTGAAATT 59.560 43.478 0.00 0.00 37.61 1.82
581 591 4.079253 AGTACGGTCAGCCATTGAAATTT 58.921 39.130 0.00 0.00 37.61 1.82
582 592 3.302365 ACGGTCAGCCATTGAAATTTG 57.698 42.857 0.00 0.00 37.61 2.32
583 593 1.994779 CGGTCAGCCATTGAAATTTGC 59.005 47.619 0.00 0.00 37.61 3.68
584 594 2.353011 CGGTCAGCCATTGAAATTTGCT 60.353 45.455 0.00 0.00 37.61 3.91
585 595 3.119531 CGGTCAGCCATTGAAATTTGCTA 60.120 43.478 0.00 0.00 37.61 3.49
586 596 4.617995 CGGTCAGCCATTGAAATTTGCTAA 60.618 41.667 0.00 0.00 37.61 3.09
587 597 4.866486 GGTCAGCCATTGAAATTTGCTAAG 59.134 41.667 0.00 0.00 37.61 2.18
588 598 5.473039 GTCAGCCATTGAAATTTGCTAAGT 58.527 37.500 0.00 0.00 37.61 2.24
589 599 5.574443 GTCAGCCATTGAAATTTGCTAAGTC 59.426 40.000 0.00 0.00 37.61 3.01
590 600 4.866486 CAGCCATTGAAATTTGCTAAGTCC 59.134 41.667 0.00 0.00 0.00 3.85
591 601 4.527816 AGCCATTGAAATTTGCTAAGTCCA 59.472 37.500 0.00 0.00 0.00 4.02
592 602 4.627035 GCCATTGAAATTTGCTAAGTCCAC 59.373 41.667 0.00 0.00 0.00 4.02
593 603 4.858692 CCATTGAAATTTGCTAAGTCCACG 59.141 41.667 0.00 0.00 0.00 4.94
594 604 3.552604 TGAAATTTGCTAAGTCCACGC 57.447 42.857 0.00 0.00 0.00 5.34
595 605 2.227865 TGAAATTTGCTAAGTCCACGCC 59.772 45.455 0.00 0.00 0.00 5.68
596 606 1.904287 AATTTGCTAAGTCCACGCCA 58.096 45.000 0.00 0.00 0.00 5.69
597 607 1.165270 ATTTGCTAAGTCCACGCCAC 58.835 50.000 0.00 0.00 0.00 5.01
598 608 0.179043 TTTGCTAAGTCCACGCCACA 60.179 50.000 0.00 0.00 0.00 4.17
599 609 0.602638 TTGCTAAGTCCACGCCACAG 60.603 55.000 0.00 0.00 0.00 3.66
600 610 1.292223 GCTAAGTCCACGCCACAGA 59.708 57.895 0.00 0.00 0.00 3.41
601 611 0.108138 GCTAAGTCCACGCCACAGAT 60.108 55.000 0.00 0.00 0.00 2.90
602 612 1.927895 CTAAGTCCACGCCACAGATC 58.072 55.000 0.00 0.00 0.00 2.75
603 613 1.478510 CTAAGTCCACGCCACAGATCT 59.521 52.381 0.00 0.00 0.00 2.75
604 614 1.557099 AAGTCCACGCCACAGATCTA 58.443 50.000 0.00 0.00 0.00 1.98
605 615 1.781786 AGTCCACGCCACAGATCTAT 58.218 50.000 0.00 0.00 0.00 1.98
606 616 1.683917 AGTCCACGCCACAGATCTATC 59.316 52.381 0.00 0.00 0.00 2.08
607 617 1.409064 GTCCACGCCACAGATCTATCA 59.591 52.381 0.00 0.00 0.00 2.15
608 618 1.683385 TCCACGCCACAGATCTATCAG 59.317 52.381 0.00 0.00 0.00 2.90
609 619 1.683385 CCACGCCACAGATCTATCAGA 59.317 52.381 0.00 0.00 0.00 3.27
610 620 2.298446 CCACGCCACAGATCTATCAGAT 59.702 50.000 0.00 0.00 37.73 2.90
611 621 3.507622 CCACGCCACAGATCTATCAGATA 59.492 47.826 0.00 0.00 34.53 1.98
612 622 4.021981 CCACGCCACAGATCTATCAGATAA 60.022 45.833 0.00 0.00 34.53 1.75
613 623 5.509670 CCACGCCACAGATCTATCAGATAAA 60.510 44.000 0.00 0.00 34.53 1.40
614 624 6.162079 CACGCCACAGATCTATCAGATAAAT 58.838 40.000 0.00 0.00 34.53 1.40
615 625 6.090493 CACGCCACAGATCTATCAGATAAATG 59.910 42.308 0.00 0.00 34.53 2.32
616 626 6.015095 ACGCCACAGATCTATCAGATAAATGA 60.015 38.462 0.00 0.00 34.53 2.57
617 627 7.040494 CGCCACAGATCTATCAGATAAATGAT 58.960 38.462 0.00 0.00 42.52 2.45
618 628 7.010275 CGCCACAGATCTATCAGATAAATGATG 59.990 40.741 0.00 0.00 40.16 3.07
619 629 8.039538 GCCACAGATCTATCAGATAAATGATGA 58.960 37.037 0.00 0.00 40.16 2.92
620 630 9.368674 CCACAGATCTATCAGATAAATGATGAC 57.631 37.037 0.00 0.00 40.16 3.06
623 633 9.089601 CAGATCTATCAGATAAATGATGACTGC 57.910 37.037 0.00 0.00 40.16 4.40
624 634 9.038072 AGATCTATCAGATAAATGATGACTGCT 57.962 33.333 0.00 0.00 40.16 4.24
627 637 9.525826 TCTATCAGATAAATGATGACTGCTAGA 57.474 33.333 0.00 0.00 40.16 2.43
637 647 6.647212 TGATGACTGCTAGATTAAAACACG 57.353 37.500 0.00 0.00 0.00 4.49
638 648 6.163476 TGATGACTGCTAGATTAAAACACGT 58.837 36.000 0.00 0.00 0.00 4.49
639 649 5.839262 TGACTGCTAGATTAAAACACGTG 57.161 39.130 15.48 15.48 0.00 4.49
640 650 4.688879 TGACTGCTAGATTAAAACACGTGG 59.311 41.667 21.57 1.66 0.00 4.94
641 651 4.000988 ACTGCTAGATTAAAACACGTGGG 58.999 43.478 21.57 0.00 0.00 4.61
642 652 4.250464 CTGCTAGATTAAAACACGTGGGA 58.750 43.478 21.57 0.65 0.00 4.37
643 653 3.998341 TGCTAGATTAAAACACGTGGGAC 59.002 43.478 21.57 3.98 0.00 4.46
644 654 4.251268 GCTAGATTAAAACACGTGGGACT 58.749 43.478 21.57 10.90 0.00 3.85
645 655 5.047164 TGCTAGATTAAAACACGTGGGACTA 60.047 40.000 21.57 11.40 0.00 2.59
646 656 5.870978 GCTAGATTAAAACACGTGGGACTAA 59.129 40.000 21.57 11.62 0.00 2.24
647 657 6.537660 GCTAGATTAAAACACGTGGGACTAAT 59.462 38.462 21.57 15.54 0.00 1.73
648 658 7.065443 GCTAGATTAAAACACGTGGGACTAATT 59.935 37.037 21.57 0.00 0.00 1.40
649 659 7.141100 AGATTAAAACACGTGGGACTAATTG 57.859 36.000 21.57 0.00 0.00 2.32
650 660 6.713450 AGATTAAAACACGTGGGACTAATTGT 59.287 34.615 21.57 0.41 0.00 2.71
651 661 4.561735 AAAACACGTGGGACTAATTGTG 57.438 40.909 21.57 0.00 0.00 3.33
652 662 2.922740 ACACGTGGGACTAATTGTGT 57.077 45.000 21.57 0.00 35.86 3.72
653 663 2.489971 ACACGTGGGACTAATTGTGTG 58.510 47.619 21.57 0.00 38.95 3.82
654 664 1.804151 CACGTGGGACTAATTGTGTGG 59.196 52.381 7.95 0.00 0.00 4.17
655 665 1.418637 ACGTGGGACTAATTGTGTGGT 59.581 47.619 0.00 0.00 0.00 4.16
656 666 1.804151 CGTGGGACTAATTGTGTGGTG 59.196 52.381 0.00 0.00 0.00 4.17
657 667 2.549134 CGTGGGACTAATTGTGTGGTGA 60.549 50.000 0.00 0.00 0.00 4.02
658 668 3.686016 GTGGGACTAATTGTGTGGTGAT 58.314 45.455 0.00 0.00 0.00 3.06
659 669 3.440173 GTGGGACTAATTGTGTGGTGATG 59.560 47.826 0.00 0.00 0.00 3.07
660 670 3.329225 TGGGACTAATTGTGTGGTGATGA 59.671 43.478 0.00 0.00 0.00 2.92
661 671 4.018506 TGGGACTAATTGTGTGGTGATGAT 60.019 41.667 0.00 0.00 0.00 2.45
662 672 4.949856 GGGACTAATTGTGTGGTGATGATT 59.050 41.667 0.00 0.00 0.00 2.57
663 673 5.163622 GGGACTAATTGTGTGGTGATGATTG 60.164 44.000 0.00 0.00 0.00 2.67
664 674 5.163622 GGACTAATTGTGTGGTGATGATTGG 60.164 44.000 0.00 0.00 0.00 3.16
665 675 5.324409 ACTAATTGTGTGGTGATGATTGGT 58.676 37.500 0.00 0.00 0.00 3.67
666 676 5.774690 ACTAATTGTGTGGTGATGATTGGTT 59.225 36.000 0.00 0.00 0.00 3.67
667 677 4.789012 ATTGTGTGGTGATGATTGGTTC 57.211 40.909 0.00 0.00 0.00 3.62
668 678 2.150390 TGTGTGGTGATGATTGGTTCG 58.850 47.619 0.00 0.00 0.00 3.95
669 679 2.151202 GTGTGGTGATGATTGGTTCGT 58.849 47.619 0.00 0.00 0.00 3.85
670 680 2.095768 GTGTGGTGATGATTGGTTCGTG 60.096 50.000 0.00 0.00 0.00 4.35
671 681 1.135689 GTGGTGATGATTGGTTCGTGC 60.136 52.381 0.00 0.00 0.00 5.34
672 682 0.096976 GGTGATGATTGGTTCGTGCG 59.903 55.000 0.00 0.00 0.00 5.34
673 683 1.075542 GTGATGATTGGTTCGTGCGA 58.924 50.000 0.00 0.00 0.00 5.10
674 684 1.665679 GTGATGATTGGTTCGTGCGAT 59.334 47.619 0.00 0.00 0.00 4.58
675 685 2.095853 GTGATGATTGGTTCGTGCGATT 59.904 45.455 0.00 0.00 0.00 3.34
676 686 2.746904 TGATGATTGGTTCGTGCGATTT 59.253 40.909 0.00 0.00 0.00 2.17
677 687 2.610219 TGATTGGTTCGTGCGATTTG 57.390 45.000 0.00 0.00 0.00 2.32
678 688 1.876799 TGATTGGTTCGTGCGATTTGT 59.123 42.857 0.00 0.00 0.00 2.83
679 689 2.241722 GATTGGTTCGTGCGATTTGTG 58.758 47.619 0.00 0.00 0.00 3.33
680 690 0.309302 TTGGTTCGTGCGATTTGTGG 59.691 50.000 0.00 0.00 0.00 4.17
681 691 1.209127 GGTTCGTGCGATTTGTGGG 59.791 57.895 0.00 0.00 0.00 4.61
682 692 1.231958 GGTTCGTGCGATTTGTGGGA 61.232 55.000 0.00 0.00 0.00 4.37
683 693 0.110373 GTTCGTGCGATTTGTGGGAC 60.110 55.000 0.00 0.00 0.00 4.46
684 694 0.250124 TTCGTGCGATTTGTGGGACT 60.250 50.000 0.00 0.00 0.00 3.85
685 695 0.604073 TCGTGCGATTTGTGGGACTA 59.396 50.000 0.00 0.00 0.00 2.59
686 696 1.001068 TCGTGCGATTTGTGGGACTAA 59.999 47.619 0.00 0.00 0.00 2.24
687 697 2.006888 CGTGCGATTTGTGGGACTAAT 58.993 47.619 0.00 0.00 0.00 1.73
688 698 2.418628 CGTGCGATTTGTGGGACTAATT 59.581 45.455 0.00 0.00 0.00 1.40
689 699 3.727673 CGTGCGATTTGTGGGACTAATTG 60.728 47.826 0.00 0.00 30.98 2.32
690 700 3.190535 GTGCGATTTGTGGGACTAATTGT 59.809 43.478 0.00 0.00 30.65 2.71
691 701 3.823873 TGCGATTTGTGGGACTAATTGTT 59.176 39.130 0.00 0.00 30.65 2.83
692 702 5.004448 TGCGATTTGTGGGACTAATTGTTA 58.996 37.500 0.00 0.00 30.65 2.41
693 703 5.123186 TGCGATTTGTGGGACTAATTGTTAG 59.877 40.000 0.00 0.00 39.18 2.34
694 704 5.448632 GCGATTTGTGGGACTAATTGTTAGG 60.449 44.000 0.00 0.00 37.57 2.69
695 705 5.646360 CGATTTGTGGGACTAATTGTTAGGT 59.354 40.000 2.22 0.00 37.57 3.08
696 706 6.403200 CGATTTGTGGGACTAATTGTTAGGTG 60.403 42.308 2.22 0.00 37.57 4.00
697 707 3.681593 TGTGGGACTAATTGTTAGGTGC 58.318 45.455 2.22 0.00 37.57 5.01
698 708 3.073209 TGTGGGACTAATTGTTAGGTGCA 59.927 43.478 2.22 0.00 37.57 4.57
699 709 4.263727 TGTGGGACTAATTGTTAGGTGCAT 60.264 41.667 0.00 0.00 37.57 3.96
700 710 4.096382 GTGGGACTAATTGTTAGGTGCATG 59.904 45.833 0.00 0.00 37.57 4.06
701 711 4.263727 TGGGACTAATTGTTAGGTGCATGT 60.264 41.667 0.00 0.00 37.57 3.21
702 712 5.045505 TGGGACTAATTGTTAGGTGCATGTA 60.046 40.000 0.00 0.00 37.57 2.29
703 713 5.883673 GGGACTAATTGTTAGGTGCATGTAA 59.116 40.000 0.00 0.00 37.57 2.41
704 714 6.038271 GGGACTAATTGTTAGGTGCATGTAAG 59.962 42.308 0.00 0.00 37.57 2.34
705 715 6.821665 GGACTAATTGTTAGGTGCATGTAAGA 59.178 38.462 0.00 0.00 37.57 2.10
706 716 7.335924 GGACTAATTGTTAGGTGCATGTAAGAA 59.664 37.037 0.00 0.00 37.57 2.52
707 717 8.630054 ACTAATTGTTAGGTGCATGTAAGAAA 57.370 30.769 0.00 0.00 37.57 2.52
708 718 9.073475 ACTAATTGTTAGGTGCATGTAAGAAAA 57.927 29.630 0.00 0.00 37.57 2.29
711 721 9.777297 AATTGTTAGGTGCATGTAAGAAAATTT 57.223 25.926 0.00 0.00 0.00 1.82
712 722 9.777297 ATTGTTAGGTGCATGTAAGAAAATTTT 57.223 25.926 2.28 2.28 0.00 1.82
713 723 9.606631 TTGTTAGGTGCATGTAAGAAAATTTTT 57.393 25.926 4.63 0.00 0.00 1.94
824 834 7.644986 TGGTTAAAATTTGACGCAAAATAGG 57.355 32.000 8.65 0.00 36.90 2.57
825 835 7.434492 TGGTTAAAATTTGACGCAAAATAGGA 58.566 30.769 8.65 0.00 36.90 2.94
826 836 7.926555 TGGTTAAAATTTGACGCAAAATAGGAA 59.073 29.630 8.65 0.14 36.90 3.36
827 837 8.432359 GGTTAAAATTTGACGCAAAATAGGAAG 58.568 33.333 8.65 0.00 36.90 3.46
828 838 9.187455 GTTAAAATTTGACGCAAAATAGGAAGA 57.813 29.630 8.65 0.00 36.90 2.87
829 839 7.873739 AAAATTTGACGCAAAATAGGAAGAG 57.126 32.000 8.65 0.00 36.90 2.85
830 840 6.575162 AATTTGACGCAAAATAGGAAGAGT 57.425 33.333 8.65 0.00 36.90 3.24
831 841 5.356882 TTTGACGCAAAATAGGAAGAGTG 57.643 39.130 3.08 0.00 29.89 3.51
832 842 2.742053 TGACGCAAAATAGGAAGAGTGC 59.258 45.455 0.00 0.00 0.00 4.40
835 845 3.665173 GCAAAATAGGAAGAGTGCGAG 57.335 47.619 0.00 0.00 0.00 5.03
836 846 2.352960 GCAAAATAGGAAGAGTGCGAGG 59.647 50.000 0.00 0.00 0.00 4.63
837 847 3.861840 CAAAATAGGAAGAGTGCGAGGA 58.138 45.455 0.00 0.00 0.00 3.71
838 848 3.528597 AAATAGGAAGAGTGCGAGGAC 57.471 47.619 0.00 0.00 0.00 3.85
839 849 1.025812 ATAGGAAGAGTGCGAGGACG 58.974 55.000 0.00 0.00 42.93 4.79
840 850 1.030488 TAGGAAGAGTGCGAGGACGG 61.030 60.000 0.00 0.00 40.15 4.79
841 851 2.341101 GGAAGAGTGCGAGGACGGA 61.341 63.158 0.00 0.00 40.15 4.69
842 852 1.137825 GAAGAGTGCGAGGACGGAG 59.862 63.158 0.00 0.00 41.00 4.63
859 869 5.684550 ACGGAGTGAACTTATTTTTGGAC 57.315 39.130 0.00 0.00 42.51 4.02
860 870 4.212636 ACGGAGTGAACTTATTTTTGGACG 59.787 41.667 0.00 0.00 42.51 4.79
861 871 4.378046 CGGAGTGAACTTATTTTTGGACGG 60.378 45.833 0.00 0.00 0.00 4.79
862 872 4.758165 GGAGTGAACTTATTTTTGGACGGA 59.242 41.667 0.00 0.00 0.00 4.69
863 873 5.106673 GGAGTGAACTTATTTTTGGACGGAG 60.107 44.000 0.00 0.00 0.00 4.63
891 901 0.678684 TACCGGTCTCTGCGTGATGA 60.679 55.000 12.40 0.00 0.00 2.92
892 902 1.517257 CCGGTCTCTGCGTGATGAC 60.517 63.158 0.00 0.00 0.00 3.06
894 904 1.517257 GGTCTCTGCGTGATGACGG 60.517 63.158 6.88 0.00 46.20 4.79
895 905 1.213013 GTCTCTGCGTGATGACGGT 59.787 57.895 6.88 0.00 46.20 4.83
921 931 2.101209 GAACACAGCAACACGACCCG 62.101 60.000 0.00 0.00 0.00 5.28
924 934 3.041940 CAGCAACACGACCCGTCC 61.042 66.667 0.00 0.00 38.32 4.79
929 939 0.887387 CAACACGACCCGTCCCAATT 60.887 55.000 0.00 0.00 38.32 2.32
939 949 1.418342 CGTCCCAATTACGCAGACCG 61.418 60.000 0.00 0.00 44.21 4.79
1193 1208 3.435186 GTTGCAGGCGCCTTCTCC 61.435 66.667 30.60 16.03 37.32 3.71
1579 1594 3.825014 CCAGATGAGGCCTAATGGAATTG 59.175 47.826 7.59 0.00 36.99 2.32
1617 1632 1.063912 CAAACTCAGCAACGTTCTGCA 59.936 47.619 14.28 7.14 45.18 4.41
1668 1683 3.131577 CACCTGGATCATCACAAAATGGG 59.868 47.826 0.00 0.00 0.00 4.00
1680 1695 1.053264 AAAATGGGCCTGTGGTGCAA 61.053 50.000 4.53 0.00 0.00 4.08
1720 1735 2.016961 CAATCGTCAATGGCCTCGG 58.983 57.895 3.32 0.00 0.00 4.63
1887 1902 1.068055 CAACAACAGCAAGCATCTCCC 60.068 52.381 0.00 0.00 0.00 4.30
1934 1949 2.953821 CGCAAACACGGCAGGATT 59.046 55.556 0.00 0.00 0.00 3.01
1965 1980 3.068881 CCTTCCTCAGGCGGAACA 58.931 61.111 0.00 0.00 38.12 3.18
2293 2308 5.705905 AGAAATTCAGTGTAGGCTTTGGTAC 59.294 40.000 0.00 0.00 0.00 3.34
2402 2575 9.119418 AGATCGATATACCTCTCATTAGTCATG 57.881 37.037 0.00 0.00 0.00 3.07
2403 2576 7.631717 TCGATATACCTCTCATTAGTCATGG 57.368 40.000 0.00 0.00 33.07 3.66
2404 2577 7.402862 TCGATATACCTCTCATTAGTCATGGA 58.597 38.462 0.00 0.00 33.07 3.41
2405 2578 7.337184 TCGATATACCTCTCATTAGTCATGGAC 59.663 40.741 0.00 0.00 33.07 4.02
2414 2587 9.241919 CTCTCATTAGTCATGGACTCATAGTAT 57.758 37.037 1.55 0.00 42.40 2.12
2446 2619 4.564372 GCGTAGATGGAGCACATGTATATG 59.436 45.833 0.00 0.00 40.72 1.78
2512 2718 8.564574 TCTGACATTTTTGTACACCATAGAAAC 58.435 33.333 0.00 0.00 0.00 2.78
2551 2757 1.094073 ATGCGTGGCTCTTCATCAGC 61.094 55.000 0.00 0.00 36.02 4.26
2552 2758 2.806856 GCGTGGCTCTTCATCAGCG 61.807 63.158 0.00 0.00 37.81 5.18
2553 2759 2.169789 CGTGGCTCTTCATCAGCGG 61.170 63.158 0.00 0.00 37.81 5.52
2554 2760 2.124983 TGGCTCTTCATCAGCGGC 60.125 61.111 0.00 0.00 37.81 6.53
2555 2761 3.267860 GGCTCTTCATCAGCGGCG 61.268 66.667 0.51 0.51 37.81 6.46
2556 2762 2.202797 GCTCTTCATCAGCGGCGA 60.203 61.111 12.98 0.00 0.00 5.54
2557 2763 1.811266 GCTCTTCATCAGCGGCGAA 60.811 57.895 12.98 0.00 0.00 4.70
2558 2764 1.361668 GCTCTTCATCAGCGGCGAAA 61.362 55.000 12.98 0.00 0.00 3.46
2559 2765 1.293924 CTCTTCATCAGCGGCGAAAT 58.706 50.000 12.98 0.00 0.00 2.17
2560 2766 1.667724 CTCTTCATCAGCGGCGAAATT 59.332 47.619 12.98 0.00 0.00 1.82
2561 2767 1.398041 TCTTCATCAGCGGCGAAATTG 59.602 47.619 12.98 2.64 0.00 2.32
2562 2768 1.131126 CTTCATCAGCGGCGAAATTGT 59.869 47.619 12.98 0.00 0.00 2.71
2563 2769 1.164411 TCATCAGCGGCGAAATTGTT 58.836 45.000 12.98 0.00 0.00 2.83
2564 2770 1.135717 TCATCAGCGGCGAAATTGTTG 60.136 47.619 12.98 8.29 0.00 3.33
2565 2771 0.881118 ATCAGCGGCGAAATTGTTGT 59.119 45.000 12.98 0.00 0.00 3.32
2566 2772 1.514003 TCAGCGGCGAAATTGTTGTA 58.486 45.000 12.98 0.00 0.00 2.41
2567 2773 1.463056 TCAGCGGCGAAATTGTTGTAG 59.537 47.619 12.98 0.00 0.00 2.74
2568 2774 0.802494 AGCGGCGAAATTGTTGTAGG 59.198 50.000 12.98 0.00 0.00 3.18
2569 2775 0.179174 GCGGCGAAATTGTTGTAGGG 60.179 55.000 12.98 0.00 0.00 3.53
2570 2776 1.161843 CGGCGAAATTGTTGTAGGGT 58.838 50.000 0.00 0.00 0.00 4.34
2571 2777 1.135803 CGGCGAAATTGTTGTAGGGTG 60.136 52.381 0.00 0.00 0.00 4.61
2572 2778 2.156098 GGCGAAATTGTTGTAGGGTGA 58.844 47.619 0.00 0.00 0.00 4.02
2573 2779 2.554893 GGCGAAATTGTTGTAGGGTGAA 59.445 45.455 0.00 0.00 0.00 3.18
2574 2780 3.004944 GGCGAAATTGTTGTAGGGTGAAA 59.995 43.478 0.00 0.00 0.00 2.69
2575 2781 3.978855 GCGAAATTGTTGTAGGGTGAAAC 59.021 43.478 0.00 0.00 0.00 2.78
2595 2801 7.308649 GTGAAACCTTAAGAGGGATCTTTTCAC 60.309 40.741 16.18 16.18 45.94 3.18
2598 2804 5.810095 CCTTAAGAGGGATCTTTTCACACT 58.190 41.667 3.36 0.00 39.55 3.55
2599 2805 6.241645 CCTTAAGAGGGATCTTTTCACACTT 58.758 40.000 3.36 0.00 41.03 3.16
2600 2806 6.150140 CCTTAAGAGGGATCTTTTCACACTTG 59.850 42.308 3.36 0.00 38.84 3.16
2653 2861 5.975988 ACCCAATTACACATCCACTAGAT 57.024 39.130 0.00 0.00 34.66 1.98
2654 2862 7.446106 AACCCAATTACACATCCACTAGATA 57.554 36.000 0.00 0.00 32.37 1.98
2655 2863 7.067496 ACCCAATTACACATCCACTAGATAG 57.933 40.000 0.00 0.00 32.37 2.08
2656 2864 5.934625 CCCAATTACACATCCACTAGATAGC 59.065 44.000 0.00 0.00 32.37 2.97
2698 2908 5.954150 AGAATACAAGCACAATCCAAGGAAT 59.046 36.000 0.00 0.00 0.00 3.01
2717 2928 6.543735 AGGAATCAAGCACTAGGTAAAGTTT 58.456 36.000 0.00 0.00 0.00 2.66
2765 2991 6.313411 GTCTTGATGACAATCTTCTCCAAGAG 59.687 42.308 0.00 0.00 42.27 2.85
2766 2992 6.212187 TCTTGATGACAATCTTCTCCAAGAGA 59.788 38.462 0.00 0.00 42.13 3.10
2841 3069 1.075659 GGGGCAGAAGGAGCAAAGT 59.924 57.895 0.00 0.00 0.00 2.66
2855 3084 9.389755 GAAGGAGCAAAGTTCTCTAAATATCTT 57.610 33.333 0.00 0.00 0.00 2.40
2897 3126 6.407752 CCCTTACAAATGGTCTAGGTACGAAT 60.408 42.308 0.00 0.00 32.30 3.34
3038 3332 4.874977 GCTACAGCGACGAGGGCC 62.875 72.222 0.00 0.00 0.00 5.80
3039 3333 4.208686 CTACAGCGACGAGGGCCC 62.209 72.222 16.46 16.46 0.00 5.80
3057 3351 4.408821 GTGCGCATGGGGTCTGGA 62.409 66.667 15.91 0.00 0.00 3.86
3058 3352 4.100084 TGCGCATGGGGTCTGGAG 62.100 66.667 5.66 0.00 0.00 3.86
3059 3353 4.864334 GCGCATGGGGTCTGGAGG 62.864 72.222 12.19 0.00 0.00 4.30
3109 3404 0.667487 ACGAGGTGTGCGTCTTCATG 60.667 55.000 0.00 0.00 37.42 3.07
3113 3408 1.626654 GGTGTGCGTCTTCATGTCCG 61.627 60.000 0.00 0.00 0.00 4.79
3248 3551 3.338250 TTGGCCTCCGGGATGCTT 61.338 61.111 21.24 0.00 33.58 3.91
3252 3555 2.507944 CCTCCGGGATGCTTCCTG 59.492 66.667 18.55 18.55 46.60 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.433186 TTTTCAACCAATGGACGCATAG 57.567 40.909 6.16 0.00 0.00 2.23
1 2 4.855715 TTTTTCAACCAATGGACGCATA 57.144 36.364 6.16 0.00 0.00 3.14
2 3 3.742433 TTTTTCAACCAATGGACGCAT 57.258 38.095 6.16 0.00 0.00 4.73
22 23 6.294508 CCCTGGAAGTTATTGATGAAAACGTT 60.295 38.462 0.00 0.00 0.00 3.99
24 25 5.414454 TCCCTGGAAGTTATTGATGAAAACG 59.586 40.000 0.00 0.00 0.00 3.60
51 52 6.678568 ATTCCATAACCCAACATTTGTCAA 57.321 33.333 0.00 0.00 0.00 3.18
71 72 9.535878 CTACAAAAGTACTCCCTGATTCTATTC 57.464 37.037 0.00 0.00 0.00 1.75
176 185 5.012354 ACACATGGCAATGGAAGAATTTTCT 59.988 36.000 5.94 0.00 38.19 2.52
220 230 5.983333 AATCTCCAACATACTCCCTGATT 57.017 39.130 0.00 0.00 0.00 2.57
221 231 5.983333 AAATCTCCAACATACTCCCTGAT 57.017 39.130 0.00 0.00 0.00 2.90
245 255 5.737860 AGATGATGCTTCCATTATATGCGA 58.262 37.500 0.00 0.00 28.82 5.10
248 258 6.481313 CCCGTAGATGATGCTTCCATTATATG 59.519 42.308 0.00 0.00 28.82 1.78
252 262 3.901222 TCCCGTAGATGATGCTTCCATTA 59.099 43.478 0.00 0.00 0.00 1.90
255 265 1.788229 TCCCGTAGATGATGCTTCCA 58.212 50.000 0.00 0.00 0.00 3.53
256 266 3.007398 AGAATCCCGTAGATGATGCTTCC 59.993 47.826 0.00 0.00 34.56 3.46
358 368 4.314522 TGTTGCATCCTTCCCTAAATCA 57.685 40.909 0.00 0.00 0.00 2.57
360 370 4.026052 CCTTGTTGCATCCTTCCCTAAAT 58.974 43.478 0.00 0.00 0.00 1.40
361 371 3.075283 TCCTTGTTGCATCCTTCCCTAAA 59.925 43.478 0.00 0.00 0.00 1.85
410 420 6.461509 CGCTTGGGCTATTATTTCTTTCCATT 60.462 38.462 0.00 0.00 36.09 3.16
444 454 2.501723 TGAATGCTTCCTCACTACTCCC 59.498 50.000 0.00 0.00 0.00 4.30
456 466 2.033424 GGACCCGCTAATTGAATGCTTC 59.967 50.000 0.00 0.00 0.00 3.86
466 476 3.279434 GAGATTTGTTGGACCCGCTAAT 58.721 45.455 0.00 0.00 0.00 1.73
519 529 5.134725 AGCCATTGGATTAGAAACAGGAT 57.865 39.130 6.95 0.00 0.00 3.24
548 558 4.082571 GGCTGACCGTACTGTTTCTAAGTA 60.083 45.833 0.00 0.00 0.00 2.24
549 559 3.305881 GGCTGACCGTACTGTTTCTAAGT 60.306 47.826 0.00 0.00 0.00 2.24
550 560 3.251571 GGCTGACCGTACTGTTTCTAAG 58.748 50.000 0.00 0.00 0.00 2.18
551 561 2.629137 TGGCTGACCGTACTGTTTCTAA 59.371 45.455 0.00 0.00 39.70 2.10
552 562 2.241160 TGGCTGACCGTACTGTTTCTA 58.759 47.619 0.00 0.00 39.70 2.10
553 563 1.045407 TGGCTGACCGTACTGTTTCT 58.955 50.000 0.00 0.00 39.70 2.52
554 564 2.094762 ATGGCTGACCGTACTGTTTC 57.905 50.000 0.00 0.00 39.70 2.78
555 565 2.151202 CAATGGCTGACCGTACTGTTT 58.849 47.619 0.00 0.00 39.70 2.83
556 566 1.346395 TCAATGGCTGACCGTACTGTT 59.654 47.619 0.00 0.00 39.70 3.16
557 567 0.973632 TCAATGGCTGACCGTACTGT 59.026 50.000 0.00 0.00 39.70 3.55
558 568 2.093306 TTCAATGGCTGACCGTACTG 57.907 50.000 0.00 0.00 39.70 2.74
559 569 2.851263 TTTCAATGGCTGACCGTACT 57.149 45.000 0.00 0.00 39.70 2.73
560 570 4.165779 CAAATTTCAATGGCTGACCGTAC 58.834 43.478 0.00 0.00 39.70 3.67
561 571 3.366883 GCAAATTTCAATGGCTGACCGTA 60.367 43.478 0.00 0.00 39.70 4.02
562 572 2.610232 GCAAATTTCAATGGCTGACCGT 60.610 45.455 0.00 0.00 39.70 4.83
563 573 1.994779 GCAAATTTCAATGGCTGACCG 59.005 47.619 0.00 0.00 39.70 4.79
564 574 3.323751 AGCAAATTTCAATGGCTGACC 57.676 42.857 0.00 0.00 32.21 4.02
565 575 5.473039 ACTTAGCAAATTTCAATGGCTGAC 58.527 37.500 9.55 0.00 33.57 3.51
566 576 5.336690 GGACTTAGCAAATTTCAATGGCTGA 60.337 40.000 9.55 1.99 33.57 4.26
567 577 4.866486 GGACTTAGCAAATTTCAATGGCTG 59.134 41.667 9.55 0.00 33.57 4.85
568 578 4.527816 TGGACTTAGCAAATTTCAATGGCT 59.472 37.500 5.43 5.43 35.11 4.75
569 579 4.627035 GTGGACTTAGCAAATTTCAATGGC 59.373 41.667 0.00 0.00 0.00 4.40
570 580 4.858692 CGTGGACTTAGCAAATTTCAATGG 59.141 41.667 0.00 0.00 0.00 3.16
571 581 4.324402 GCGTGGACTTAGCAAATTTCAATG 59.676 41.667 0.00 0.00 0.00 2.82
572 582 4.485163 GCGTGGACTTAGCAAATTTCAAT 58.515 39.130 0.00 0.00 0.00 2.57
573 583 3.305064 GGCGTGGACTTAGCAAATTTCAA 60.305 43.478 0.00 0.00 0.00 2.69
574 584 2.227865 GGCGTGGACTTAGCAAATTTCA 59.772 45.455 0.00 0.00 0.00 2.69
575 585 2.227865 TGGCGTGGACTTAGCAAATTTC 59.772 45.455 0.00 0.00 0.00 2.17
576 586 2.030274 GTGGCGTGGACTTAGCAAATTT 60.030 45.455 0.00 0.00 0.00 1.82
577 587 1.539827 GTGGCGTGGACTTAGCAAATT 59.460 47.619 0.00 0.00 0.00 1.82
578 588 1.165270 GTGGCGTGGACTTAGCAAAT 58.835 50.000 0.00 0.00 0.00 2.32
579 589 0.179043 TGTGGCGTGGACTTAGCAAA 60.179 50.000 0.00 0.00 0.00 3.68
580 590 0.602638 CTGTGGCGTGGACTTAGCAA 60.603 55.000 0.00 0.00 0.00 3.91
581 591 1.005037 CTGTGGCGTGGACTTAGCA 60.005 57.895 0.00 0.00 0.00 3.49
582 592 0.108138 ATCTGTGGCGTGGACTTAGC 60.108 55.000 0.00 0.00 0.00 3.09
583 593 1.478510 AGATCTGTGGCGTGGACTTAG 59.521 52.381 0.00 0.00 0.00 2.18
584 594 1.557099 AGATCTGTGGCGTGGACTTA 58.443 50.000 0.00 0.00 0.00 2.24
585 595 1.557099 TAGATCTGTGGCGTGGACTT 58.443 50.000 5.18 0.00 0.00 3.01
586 596 1.683917 GATAGATCTGTGGCGTGGACT 59.316 52.381 5.18 0.00 0.00 3.85
587 597 1.409064 TGATAGATCTGTGGCGTGGAC 59.591 52.381 5.18 0.00 0.00 4.02
588 598 1.683385 CTGATAGATCTGTGGCGTGGA 59.317 52.381 5.18 0.00 0.00 4.02
589 599 1.683385 TCTGATAGATCTGTGGCGTGG 59.317 52.381 5.18 0.00 0.00 4.94
590 600 3.657015 ATCTGATAGATCTGTGGCGTG 57.343 47.619 5.18 0.00 25.75 5.34
591 601 5.791336 TTTATCTGATAGATCTGTGGCGT 57.209 39.130 5.18 0.00 36.20 5.68
592 602 6.393171 TCATTTATCTGATAGATCTGTGGCG 58.607 40.000 5.18 0.00 36.20 5.69
593 603 8.039538 TCATCATTTATCTGATAGATCTGTGGC 58.960 37.037 5.18 0.00 36.20 5.01
594 604 9.368674 GTCATCATTTATCTGATAGATCTGTGG 57.631 37.037 5.18 0.00 36.20 4.17
597 607 9.089601 GCAGTCATCATTTATCTGATAGATCTG 57.910 37.037 5.18 4.36 36.20 2.90
598 608 9.038072 AGCAGTCATCATTTATCTGATAGATCT 57.962 33.333 0.00 0.00 36.20 2.75
601 611 9.525826 TCTAGCAGTCATCATTTATCTGATAGA 57.474 33.333 12.30 12.30 45.37 1.98
611 621 8.177663 CGTGTTTTAATCTAGCAGTCATCATTT 58.822 33.333 0.00 0.00 0.00 2.32
612 622 7.334421 ACGTGTTTTAATCTAGCAGTCATCATT 59.666 33.333 0.00 0.00 0.00 2.57
613 623 6.818644 ACGTGTTTTAATCTAGCAGTCATCAT 59.181 34.615 0.00 0.00 0.00 2.45
614 624 6.090763 CACGTGTTTTAATCTAGCAGTCATCA 59.909 38.462 7.58 0.00 0.00 3.07
615 625 6.455646 CCACGTGTTTTAATCTAGCAGTCATC 60.456 42.308 15.65 0.00 0.00 2.92
616 626 5.351465 CCACGTGTTTTAATCTAGCAGTCAT 59.649 40.000 15.65 0.00 0.00 3.06
617 627 4.688879 CCACGTGTTTTAATCTAGCAGTCA 59.311 41.667 15.65 0.00 0.00 3.41
618 628 4.092968 CCCACGTGTTTTAATCTAGCAGTC 59.907 45.833 15.65 0.00 0.00 3.51
619 629 4.000988 CCCACGTGTTTTAATCTAGCAGT 58.999 43.478 15.65 0.00 0.00 4.40
620 630 4.092968 GTCCCACGTGTTTTAATCTAGCAG 59.907 45.833 15.65 0.00 0.00 4.24
621 631 3.998341 GTCCCACGTGTTTTAATCTAGCA 59.002 43.478 15.65 0.00 0.00 3.49
622 632 4.251268 AGTCCCACGTGTTTTAATCTAGC 58.749 43.478 15.65 0.00 0.00 3.42
623 633 8.388103 CAATTAGTCCCACGTGTTTTAATCTAG 58.612 37.037 15.65 0.00 0.00 2.43
624 634 7.879160 ACAATTAGTCCCACGTGTTTTAATCTA 59.121 33.333 15.65 4.60 0.00 1.98
625 635 6.713450 ACAATTAGTCCCACGTGTTTTAATCT 59.287 34.615 15.65 5.50 0.00 2.40
626 636 6.799925 CACAATTAGTCCCACGTGTTTTAATC 59.200 38.462 15.65 0.00 0.00 1.75
627 637 6.263617 ACACAATTAGTCCCACGTGTTTTAAT 59.736 34.615 15.65 9.81 34.06 1.40
628 638 5.589452 ACACAATTAGTCCCACGTGTTTTAA 59.411 36.000 15.65 7.98 34.06 1.52
629 639 5.007823 CACACAATTAGTCCCACGTGTTTTA 59.992 40.000 15.65 0.00 35.52 1.52
630 640 3.949113 ACACAATTAGTCCCACGTGTTTT 59.051 39.130 15.65 0.00 34.06 2.43
631 641 3.314080 CACACAATTAGTCCCACGTGTTT 59.686 43.478 15.65 0.00 35.52 2.83
632 642 2.875933 CACACAATTAGTCCCACGTGTT 59.124 45.455 15.65 0.00 35.52 3.32
633 643 2.489971 CACACAATTAGTCCCACGTGT 58.510 47.619 15.65 0.00 38.07 4.49
634 644 1.804151 CCACACAATTAGTCCCACGTG 59.196 52.381 9.08 9.08 0.00 4.49
635 645 1.418637 ACCACACAATTAGTCCCACGT 59.581 47.619 0.00 0.00 0.00 4.49
636 646 1.804151 CACCACACAATTAGTCCCACG 59.196 52.381 0.00 0.00 0.00 4.94
637 647 3.134574 TCACCACACAATTAGTCCCAC 57.865 47.619 0.00 0.00 0.00 4.61
638 648 3.329225 TCATCACCACACAATTAGTCCCA 59.671 43.478 0.00 0.00 0.00 4.37
639 649 3.950397 TCATCACCACACAATTAGTCCC 58.050 45.455 0.00 0.00 0.00 4.46
640 650 5.163622 CCAATCATCACCACACAATTAGTCC 60.164 44.000 0.00 0.00 0.00 3.85
641 651 5.415701 ACCAATCATCACCACACAATTAGTC 59.584 40.000 0.00 0.00 0.00 2.59
642 652 5.324409 ACCAATCATCACCACACAATTAGT 58.676 37.500 0.00 0.00 0.00 2.24
643 653 5.902613 ACCAATCATCACCACACAATTAG 57.097 39.130 0.00 0.00 0.00 1.73
644 654 5.106357 CGAACCAATCATCACCACACAATTA 60.106 40.000 0.00 0.00 0.00 1.40
645 655 4.321156 CGAACCAATCATCACCACACAATT 60.321 41.667 0.00 0.00 0.00 2.32
646 656 3.191162 CGAACCAATCATCACCACACAAT 59.809 43.478 0.00 0.00 0.00 2.71
647 657 2.551887 CGAACCAATCATCACCACACAA 59.448 45.455 0.00 0.00 0.00 3.33
648 658 2.150390 CGAACCAATCATCACCACACA 58.850 47.619 0.00 0.00 0.00 3.72
649 659 2.095768 CACGAACCAATCATCACCACAC 60.096 50.000 0.00 0.00 0.00 3.82
650 660 2.150390 CACGAACCAATCATCACCACA 58.850 47.619 0.00 0.00 0.00 4.17
651 661 1.135689 GCACGAACCAATCATCACCAC 60.136 52.381 0.00 0.00 0.00 4.16
652 662 1.164411 GCACGAACCAATCATCACCA 58.836 50.000 0.00 0.00 0.00 4.17
653 663 0.096976 CGCACGAACCAATCATCACC 59.903 55.000 0.00 0.00 0.00 4.02
654 664 1.075542 TCGCACGAACCAATCATCAC 58.924 50.000 0.00 0.00 0.00 3.06
655 665 2.022764 ATCGCACGAACCAATCATCA 57.977 45.000 0.00 0.00 0.00 3.07
656 666 3.100817 CAAATCGCACGAACCAATCATC 58.899 45.455 0.00 0.00 0.00 2.92
657 667 2.487762 ACAAATCGCACGAACCAATCAT 59.512 40.909 0.00 0.00 0.00 2.45
658 668 1.876799 ACAAATCGCACGAACCAATCA 59.123 42.857 0.00 0.00 0.00 2.57
659 669 2.241722 CACAAATCGCACGAACCAATC 58.758 47.619 0.00 0.00 0.00 2.67
660 670 1.068610 CCACAAATCGCACGAACCAAT 60.069 47.619 0.00 0.00 0.00 3.16
661 671 0.309302 CCACAAATCGCACGAACCAA 59.691 50.000 0.00 0.00 0.00 3.67
662 672 1.511318 CCCACAAATCGCACGAACCA 61.511 55.000 0.00 0.00 0.00 3.67
663 673 1.209127 CCCACAAATCGCACGAACC 59.791 57.895 0.00 0.00 0.00 3.62
664 674 0.110373 GTCCCACAAATCGCACGAAC 60.110 55.000 0.00 0.00 0.00 3.95
665 675 0.250124 AGTCCCACAAATCGCACGAA 60.250 50.000 0.00 0.00 0.00 3.85
666 676 0.604073 TAGTCCCACAAATCGCACGA 59.396 50.000 0.00 0.00 0.00 4.35
667 677 1.434555 TTAGTCCCACAAATCGCACG 58.565 50.000 0.00 0.00 0.00 5.34
668 678 3.190535 ACAATTAGTCCCACAAATCGCAC 59.809 43.478 0.00 0.00 0.00 5.34
669 679 3.417101 ACAATTAGTCCCACAAATCGCA 58.583 40.909 0.00 0.00 0.00 5.10
670 680 4.434713 AACAATTAGTCCCACAAATCGC 57.565 40.909 0.00 0.00 0.00 4.58
671 681 5.646360 ACCTAACAATTAGTCCCACAAATCG 59.354 40.000 0.00 0.00 0.00 3.34
672 682 6.625081 GCACCTAACAATTAGTCCCACAAATC 60.625 42.308 0.00 0.00 0.00 2.17
673 683 5.185056 GCACCTAACAATTAGTCCCACAAAT 59.815 40.000 0.00 0.00 0.00 2.32
674 684 4.521256 GCACCTAACAATTAGTCCCACAAA 59.479 41.667 0.00 0.00 0.00 2.83
675 685 4.076394 GCACCTAACAATTAGTCCCACAA 58.924 43.478 0.00 0.00 0.00 3.33
676 686 3.073209 TGCACCTAACAATTAGTCCCACA 59.927 43.478 0.00 0.00 0.00 4.17
677 687 3.681593 TGCACCTAACAATTAGTCCCAC 58.318 45.455 0.00 0.00 0.00 4.61
678 688 4.263727 ACATGCACCTAACAATTAGTCCCA 60.264 41.667 0.00 0.00 0.00 4.37
679 689 4.270008 ACATGCACCTAACAATTAGTCCC 58.730 43.478 0.00 0.00 0.00 4.46
680 690 6.821665 TCTTACATGCACCTAACAATTAGTCC 59.178 38.462 0.00 0.00 0.00 3.85
681 691 7.843490 TCTTACATGCACCTAACAATTAGTC 57.157 36.000 0.00 0.00 0.00 2.59
682 692 8.630054 TTTCTTACATGCACCTAACAATTAGT 57.370 30.769 0.00 0.00 0.00 2.24
685 695 9.777297 AAATTTTCTTACATGCACCTAACAATT 57.223 25.926 0.00 0.00 0.00 2.32
686 696 9.777297 AAAATTTTCTTACATGCACCTAACAAT 57.223 25.926 0.00 0.00 0.00 2.71
687 697 9.606631 AAAAATTTTCTTACATGCACCTAACAA 57.393 25.926 3.41 0.00 0.00 2.83
798 808 9.360093 CCTATTTTGCGTCAAATTTTAACCATA 57.640 29.630 5.97 0.04 33.19 2.74
799 809 8.091449 TCCTATTTTGCGTCAAATTTTAACCAT 58.909 29.630 5.97 0.00 33.19 3.55
800 810 7.434492 TCCTATTTTGCGTCAAATTTTAACCA 58.566 30.769 5.97 0.00 33.19 3.67
801 811 7.876896 TCCTATTTTGCGTCAAATTTTAACC 57.123 32.000 5.97 0.00 33.19 2.85
802 812 9.187455 TCTTCCTATTTTGCGTCAAATTTTAAC 57.813 29.630 5.97 0.00 33.19 2.01
803 813 9.405587 CTCTTCCTATTTTGCGTCAAATTTTAA 57.594 29.630 5.97 0.00 33.19 1.52
804 814 8.573035 ACTCTTCCTATTTTGCGTCAAATTTTA 58.427 29.630 5.97 0.00 33.19 1.52
805 815 7.382218 CACTCTTCCTATTTTGCGTCAAATTTT 59.618 33.333 5.97 0.00 33.19 1.82
806 816 6.863126 CACTCTTCCTATTTTGCGTCAAATTT 59.137 34.615 5.97 0.00 33.19 1.82
807 817 6.381801 CACTCTTCCTATTTTGCGTCAAATT 58.618 36.000 5.97 5.71 33.19 1.82
808 818 5.619981 GCACTCTTCCTATTTTGCGTCAAAT 60.620 40.000 5.97 3.23 33.19 2.32
809 819 4.320202 GCACTCTTCCTATTTTGCGTCAAA 60.320 41.667 1.63 1.63 0.00 2.69
810 820 3.188460 GCACTCTTCCTATTTTGCGTCAA 59.812 43.478 0.00 0.00 0.00 3.18
811 821 2.742053 GCACTCTTCCTATTTTGCGTCA 59.258 45.455 0.00 0.00 0.00 4.35
812 822 2.222819 CGCACTCTTCCTATTTTGCGTC 60.223 50.000 5.65 0.00 45.83 5.19
813 823 1.732259 CGCACTCTTCCTATTTTGCGT 59.268 47.619 5.65 0.00 45.83 5.24
814 824 2.442189 CGCACTCTTCCTATTTTGCG 57.558 50.000 0.00 0.00 45.73 4.85
815 825 2.352960 CCTCGCACTCTTCCTATTTTGC 59.647 50.000 0.00 0.00 0.00 3.68
816 826 3.619038 GTCCTCGCACTCTTCCTATTTTG 59.381 47.826 0.00 0.00 0.00 2.44
817 827 3.676324 CGTCCTCGCACTCTTCCTATTTT 60.676 47.826 0.00 0.00 0.00 1.82
818 828 2.159226 CGTCCTCGCACTCTTCCTATTT 60.159 50.000 0.00 0.00 0.00 1.40
819 829 1.405821 CGTCCTCGCACTCTTCCTATT 59.594 52.381 0.00 0.00 0.00 1.73
820 830 1.025812 CGTCCTCGCACTCTTCCTAT 58.974 55.000 0.00 0.00 0.00 2.57
821 831 1.030488 CCGTCCTCGCACTCTTCCTA 61.030 60.000 0.00 0.00 35.54 2.94
822 832 2.344203 CCGTCCTCGCACTCTTCCT 61.344 63.158 0.00 0.00 35.54 3.36
823 833 2.182030 CCGTCCTCGCACTCTTCC 59.818 66.667 0.00 0.00 35.54 3.46
824 834 1.137825 CTCCGTCCTCGCACTCTTC 59.862 63.158 0.00 0.00 35.54 2.87
825 835 1.604023 ACTCCGTCCTCGCACTCTT 60.604 57.895 0.00 0.00 35.54 2.85
826 836 2.034376 ACTCCGTCCTCGCACTCT 59.966 61.111 0.00 0.00 35.54 3.24
827 837 1.863662 TTCACTCCGTCCTCGCACTC 61.864 60.000 0.00 0.00 35.54 3.51
828 838 1.901948 TTCACTCCGTCCTCGCACT 60.902 57.895 0.00 0.00 35.54 4.40
829 839 1.733399 GTTCACTCCGTCCTCGCAC 60.733 63.158 0.00 0.00 35.54 5.34
830 840 1.461091 AAGTTCACTCCGTCCTCGCA 61.461 55.000 0.00 0.00 35.54 5.10
831 841 0.524862 TAAGTTCACTCCGTCCTCGC 59.475 55.000 0.00 0.00 35.54 5.03
832 842 3.505464 AATAAGTTCACTCCGTCCTCG 57.495 47.619 0.00 0.00 0.00 4.63
833 843 5.106673 CCAAAAATAAGTTCACTCCGTCCTC 60.107 44.000 0.00 0.00 0.00 3.71
834 844 4.760204 CCAAAAATAAGTTCACTCCGTCCT 59.240 41.667 0.00 0.00 0.00 3.85
835 845 4.758165 TCCAAAAATAAGTTCACTCCGTCC 59.242 41.667 0.00 0.00 0.00 4.79
836 846 5.614013 CGTCCAAAAATAAGTTCACTCCGTC 60.614 44.000 0.00 0.00 0.00 4.79
837 847 4.212636 CGTCCAAAAATAAGTTCACTCCGT 59.787 41.667 0.00 0.00 0.00 4.69
838 848 4.378046 CCGTCCAAAAATAAGTTCACTCCG 60.378 45.833 0.00 0.00 0.00 4.63
839 849 4.758165 TCCGTCCAAAAATAAGTTCACTCC 59.242 41.667 0.00 0.00 0.00 3.85
840 850 5.469084 ACTCCGTCCAAAAATAAGTTCACTC 59.531 40.000 0.00 0.00 0.00 3.51
841 851 5.374071 ACTCCGTCCAAAAATAAGTTCACT 58.626 37.500 0.00 0.00 0.00 3.41
842 852 5.684550 ACTCCGTCCAAAAATAAGTTCAC 57.315 39.130 0.00 0.00 0.00 3.18
843 853 7.162761 TCATACTCCGTCCAAAAATAAGTTCA 58.837 34.615 0.00 0.00 0.00 3.18
844 854 7.548075 TCTCATACTCCGTCCAAAAATAAGTTC 59.452 37.037 0.00 0.00 0.00 3.01
845 855 7.333672 GTCTCATACTCCGTCCAAAAATAAGTT 59.666 37.037 0.00 0.00 0.00 2.66
846 856 6.817140 GTCTCATACTCCGTCCAAAAATAAGT 59.183 38.462 0.00 0.00 0.00 2.24
847 857 7.042335 AGTCTCATACTCCGTCCAAAAATAAG 58.958 38.462 0.00 0.00 30.33 1.73
848 858 6.942976 AGTCTCATACTCCGTCCAAAAATAA 58.057 36.000 0.00 0.00 30.33 1.40
849 859 6.540438 AGTCTCATACTCCGTCCAAAAATA 57.460 37.500 0.00 0.00 30.33 1.40
850 860 5.422214 AGTCTCATACTCCGTCCAAAAAT 57.578 39.130 0.00 0.00 30.33 1.82
851 861 4.884668 AGTCTCATACTCCGTCCAAAAA 57.115 40.909 0.00 0.00 30.33 1.94
852 862 4.159135 GGTAGTCTCATACTCCGTCCAAAA 59.841 45.833 0.00 0.00 39.80 2.44
853 863 3.698040 GGTAGTCTCATACTCCGTCCAAA 59.302 47.826 0.00 0.00 39.80 3.28
854 864 3.285484 GGTAGTCTCATACTCCGTCCAA 58.715 50.000 0.00 0.00 39.80 3.53
855 865 2.744166 CGGTAGTCTCATACTCCGTCCA 60.744 54.545 0.00 0.00 40.77 4.02
856 866 1.872313 CGGTAGTCTCATACTCCGTCC 59.128 57.143 0.00 0.00 40.77 4.79
857 867 1.872313 CCGGTAGTCTCATACTCCGTC 59.128 57.143 0.00 0.00 42.49 4.79
858 868 1.211457 ACCGGTAGTCTCATACTCCGT 59.789 52.381 4.49 0.00 42.49 4.69
859 869 1.872313 GACCGGTAGTCTCATACTCCG 59.128 57.143 7.34 0.00 43.09 4.63
891 901 1.021968 GCTGTGTTCCTTTTCACCGT 58.978 50.000 0.00 0.00 34.14 4.83
892 902 1.021202 TGCTGTGTTCCTTTTCACCG 58.979 50.000 0.00 0.00 34.14 4.94
893 903 2.165437 TGTTGCTGTGTTCCTTTTCACC 59.835 45.455 0.00 0.00 34.14 4.02
894 904 3.179048 GTGTTGCTGTGTTCCTTTTCAC 58.821 45.455 0.00 0.00 35.43 3.18
895 905 2.159448 CGTGTTGCTGTGTTCCTTTTCA 60.159 45.455 0.00 0.00 0.00 2.69
921 931 0.390735 ACGGTCTGCGTAATTGGGAC 60.391 55.000 0.00 0.00 0.00 4.46
924 934 0.390603 TGGACGGTCTGCGTAATTGG 60.391 55.000 8.23 0.00 0.00 3.16
929 939 3.066190 CCCTGGACGGTCTGCGTA 61.066 66.667 8.23 0.00 0.00 4.42
945 955 4.716977 AGAGGACGGGGGTGGACC 62.717 72.222 0.00 0.00 39.11 4.46
1136 1148 4.577246 CTCCCGTAGCAGCCGAGC 62.577 72.222 0.00 0.00 0.00 5.03
1295 1310 1.520564 GTGCCATATGTCGTGCCGA 60.521 57.895 1.24 0.00 0.00 5.54
1579 1594 0.764890 TGAGCACCATATGGGGTAGC 59.235 55.000 24.97 20.76 41.84 3.58
1617 1632 3.319972 GTGGCCTCATTTGTGCATGATAT 59.680 43.478 3.32 0.00 32.59 1.63
1646 1661 3.131577 CCCATTTTGTGATGATCCAGGTG 59.868 47.826 0.00 0.00 0.00 4.00
1668 1683 1.336795 GGTAACATTTGCACCACAGGC 60.337 52.381 0.00 0.00 32.32 4.85
1708 1723 0.960364 GAAACAGCCGAGGCCATTGA 60.960 55.000 10.95 0.00 43.17 2.57
1720 1735 1.400242 GCGTTGATGTGGAGAAACAGC 60.400 52.381 0.00 0.00 36.99 4.40
1824 1839 1.332195 GGGCATTAAGATGGGGAAGC 58.668 55.000 0.00 0.00 33.72 3.86
1849 1864 2.844451 GCCGTTGCTGCTGGTTCAA 61.844 57.895 0.00 0.00 33.53 2.69
1934 1949 4.254709 AAGGTGTCGCTGGCTGCA 62.255 61.111 16.76 1.04 43.06 4.41
1941 1956 3.382111 CCTGAGGAAGGTGTCGCT 58.618 61.111 0.00 0.00 41.74 4.93
2293 2308 9.941991 CGCTTTTCAAAGTAAATGACATAATTG 57.058 29.630 1.37 0.00 38.28 2.32
2298 2313 6.734137 TCACGCTTTTCAAAGTAAATGACAT 58.266 32.000 1.37 0.00 38.28 3.06
2301 2316 7.704472 ACAATTCACGCTTTTCAAAGTAAATGA 59.296 29.630 1.37 0.00 38.28 2.57
2391 2564 8.579863 CACATACTATGAGTCCATGACTAATGA 58.420 37.037 2.90 0.00 43.53 2.57
2398 2571 6.818142 CACAAACACATACTATGAGTCCATGA 59.182 38.462 2.90 0.00 32.88 3.07
2399 2572 6.457392 GCACAAACACATACTATGAGTCCATG 60.457 42.308 2.90 4.84 32.88 3.66
2400 2573 5.586243 GCACAAACACATACTATGAGTCCAT 59.414 40.000 2.90 0.00 32.88 3.41
2401 2574 4.935205 GCACAAACACATACTATGAGTCCA 59.065 41.667 2.90 0.00 32.88 4.02
2402 2575 4.032900 CGCACAAACACATACTATGAGTCC 59.967 45.833 2.90 0.00 32.88 3.85
2403 2576 4.625742 ACGCACAAACACATACTATGAGTC 59.374 41.667 2.90 0.00 32.88 3.36
2404 2577 4.566004 ACGCACAAACACATACTATGAGT 58.434 39.130 2.90 0.00 35.58 3.41
2405 2578 6.033966 TCTACGCACAAACACATACTATGAG 58.966 40.000 2.90 0.00 0.00 2.90
2414 2587 2.412870 CTCCATCTACGCACAAACACA 58.587 47.619 0.00 0.00 0.00 3.72
2446 2619 2.570181 CGTCAGGTACGTGGGACC 59.430 66.667 15.15 0.00 46.72 4.46
2473 2679 4.970662 AATGTCAGATGGCAATGTACAC 57.029 40.909 0.00 0.00 31.21 2.90
2512 2718 4.722700 CTGGGTGGAACGGCTGGG 62.723 72.222 0.00 0.00 38.12 4.45
2551 2757 1.135803 CACCCTACAACAATTTCGCCG 60.136 52.381 0.00 0.00 0.00 6.46
2552 2758 2.156098 TCACCCTACAACAATTTCGCC 58.844 47.619 0.00 0.00 0.00 5.54
2553 2759 3.907894 TTCACCCTACAACAATTTCGC 57.092 42.857 0.00 0.00 0.00 4.70
2554 2760 4.277423 AGGTTTCACCCTACAACAATTTCG 59.723 41.667 0.00 0.00 39.75 3.46
2555 2761 5.784578 AGGTTTCACCCTACAACAATTTC 57.215 39.130 0.00 0.00 39.75 2.17
2556 2762 7.562088 TCTTAAGGTTTCACCCTACAACAATTT 59.438 33.333 1.85 0.00 39.75 1.82
2557 2763 7.064229 TCTTAAGGTTTCACCCTACAACAATT 58.936 34.615 1.85 0.00 39.75 2.32
2558 2764 6.607019 TCTTAAGGTTTCACCCTACAACAAT 58.393 36.000 1.85 0.00 39.75 2.71
2559 2765 6.003859 TCTTAAGGTTTCACCCTACAACAA 57.996 37.500 1.85 0.00 39.75 2.83
2560 2766 5.455612 CCTCTTAAGGTTTCACCCTACAACA 60.456 44.000 1.85 0.00 39.75 3.33
2561 2767 5.001874 CCTCTTAAGGTTTCACCCTACAAC 58.998 45.833 1.85 0.00 39.75 3.32
2562 2768 4.042435 CCCTCTTAAGGTTTCACCCTACAA 59.958 45.833 1.85 0.00 41.59 2.41
2563 2769 3.585732 CCCTCTTAAGGTTTCACCCTACA 59.414 47.826 1.85 0.00 41.59 2.74
2564 2770 3.842436 TCCCTCTTAAGGTTTCACCCTAC 59.158 47.826 1.85 0.00 41.59 3.18
2565 2771 4.150516 TCCCTCTTAAGGTTTCACCCTA 57.849 45.455 1.85 0.00 41.59 3.53
2566 2772 2.999928 TCCCTCTTAAGGTTTCACCCT 58.000 47.619 1.85 0.00 41.59 4.34
2567 2773 3.523972 AGATCCCTCTTAAGGTTTCACCC 59.476 47.826 1.85 0.00 41.59 4.61
2568 2774 4.846168 AGATCCCTCTTAAGGTTTCACC 57.154 45.455 1.85 0.00 41.59 4.02
2569 2775 6.715264 TGAAAAGATCCCTCTTAAGGTTTCAC 59.285 38.462 1.85 0.00 40.93 3.18
2570 2776 6.715264 GTGAAAAGATCCCTCTTAAGGTTTCA 59.285 38.462 1.85 0.00 40.93 2.69
2571 2777 6.715264 TGTGAAAAGATCCCTCTTAAGGTTTC 59.285 38.462 1.85 0.00 40.93 2.78
2572 2778 6.490381 GTGTGAAAAGATCCCTCTTAAGGTTT 59.510 38.462 1.85 0.00 40.93 3.27
2573 2779 6.004574 GTGTGAAAAGATCCCTCTTAAGGTT 58.995 40.000 1.85 0.00 40.93 3.50
2574 2780 5.310857 AGTGTGAAAAGATCCCTCTTAAGGT 59.689 40.000 1.85 0.00 40.93 3.50
2575 2781 5.810095 AGTGTGAAAAGATCCCTCTTAAGG 58.190 41.667 1.85 0.00 40.93 2.69
2576 2782 6.150140 CCAAGTGTGAAAAGATCCCTCTTAAG 59.850 42.308 0.00 0.00 40.93 1.85
2577 2783 6.003950 CCAAGTGTGAAAAGATCCCTCTTAA 58.996 40.000 0.00 0.00 40.93 1.85
2578 2784 5.309543 TCCAAGTGTGAAAAGATCCCTCTTA 59.690 40.000 0.00 0.00 40.93 2.10
2579 2785 4.104738 TCCAAGTGTGAAAAGATCCCTCTT 59.895 41.667 0.00 0.00 43.71 2.85
2580 2786 3.652869 TCCAAGTGTGAAAAGATCCCTCT 59.347 43.478 0.00 0.00 0.00 3.69
2581 2787 4.021102 TCCAAGTGTGAAAAGATCCCTC 57.979 45.455 0.00 0.00 0.00 4.30
2582 2788 4.145052 GTTCCAAGTGTGAAAAGATCCCT 58.855 43.478 0.00 0.00 0.00 4.20
2583 2789 3.888930 TGTTCCAAGTGTGAAAAGATCCC 59.111 43.478 0.00 0.00 0.00 3.85
2584 2790 4.338118 TGTGTTCCAAGTGTGAAAAGATCC 59.662 41.667 0.00 0.00 0.00 3.36
2585 2791 5.499139 TGTGTTCCAAGTGTGAAAAGATC 57.501 39.130 0.00 0.00 0.00 2.75
2586 2792 5.894807 CTTGTGTTCCAAGTGTGAAAAGAT 58.105 37.500 0.00 0.00 44.64 2.40
2587 2793 5.309323 CTTGTGTTCCAAGTGTGAAAAGA 57.691 39.130 0.00 0.00 44.64 2.52
2619 2826 9.968870 GATGTGTAATTGGGTTTTGTTTAAGTA 57.031 29.630 0.00 0.00 0.00 2.24
2653 2861 6.048732 TCTTGTGGATCTATGTGTTTGCTA 57.951 37.500 0.00 0.00 0.00 3.49
2654 2862 4.910195 TCTTGTGGATCTATGTGTTTGCT 58.090 39.130 0.00 0.00 0.00 3.91
2655 2863 5.627499 TTCTTGTGGATCTATGTGTTTGC 57.373 39.130 0.00 0.00 0.00 3.68
2656 2864 8.267620 TGTATTCTTGTGGATCTATGTGTTTG 57.732 34.615 0.00 0.00 0.00 2.93
2717 2928 4.445735 CCTCACCTACTTTGGAGTGGAAAA 60.446 45.833 0.00 0.00 36.55 2.29
2720 2931 2.257207 CCTCACCTACTTTGGAGTGGA 58.743 52.381 0.00 0.00 36.55 4.02
2765 2991 5.773176 TCCCTTAGTGGATTTCAAAACCTTC 59.227 40.000 0.00 0.00 38.35 3.46
2766 2992 5.711698 TCCCTTAGTGGATTTCAAAACCTT 58.288 37.500 0.00 0.00 38.35 3.50
2771 2998 5.492524 AGAGGATCCCTTAGTGGATTTCAAA 59.507 40.000 8.55 0.00 45.25 2.69
2827 3055 8.729805 ATATTTAGAGAACTTTGCTCCTTCTG 57.270 34.615 0.00 0.00 32.82 3.02
2897 3126 4.296852 CCCCTCTCCCACCTACCTATATAA 59.703 50.000 0.00 0.00 0.00 0.98
3040 3334 4.408821 TCCAGACCCCATGCGCAC 62.409 66.667 14.90 0.00 0.00 5.34
3041 3335 4.100084 CTCCAGACCCCATGCGCA 62.100 66.667 14.96 14.96 0.00 6.09
3042 3336 4.864334 CCTCCAGACCCCATGCGC 62.864 72.222 0.00 0.00 0.00 6.09
3043 3337 4.864334 GCCTCCAGACCCCATGCG 62.864 72.222 0.00 0.00 0.00 4.73
3044 3338 4.512914 GGCCTCCAGACCCCATGC 62.513 72.222 0.00 0.00 0.00 4.06
3045 3339 4.181010 CGGCCTCCAGACCCCATG 62.181 72.222 0.00 0.00 0.00 3.66
3046 3340 4.741239 ACGGCCTCCAGACCCCAT 62.741 66.667 0.00 0.00 0.00 4.00
3051 3345 4.314440 TGTGCACGGCCTCCAGAC 62.314 66.667 13.13 0.00 0.00 3.51
3052 3346 4.314440 GTGTGCACGGCCTCCAGA 62.314 66.667 13.13 0.00 0.00 3.86
3093 3387 0.320771 GGACATGAAGACGCACACCT 60.321 55.000 0.00 0.00 0.00 4.00
3109 3404 0.175989 CTCCCAGAAAGCTACCGGAC 59.824 60.000 9.46 0.00 0.00 4.79
3113 3408 0.393132 GTGCCTCCCAGAAAGCTACC 60.393 60.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.