Multiple sequence alignment - TraesCS6B01G189200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G189200 chr6B 100.000 3325 0 0 1 3325 219016632 219013308 0.000000e+00 6141.0
1 TraesCS6B01G189200 chr6A 96.002 1676 52 6 879 2548 157423620 157425286 0.000000e+00 2710.0
2 TraesCS6B01G189200 chr6A 94.543 733 31 2 1 724 157422883 157423615 0.000000e+00 1123.0
3 TraesCS6B01G189200 chr6A 95.477 619 26 2 2708 3325 157426267 157426884 0.000000e+00 987.0
4 TraesCS6B01G189200 chr6A 85.965 114 9 5 2554 2667 157426050 157426156 7.540000e-22 115.0
5 TraesCS6B01G189200 chr6D 94.870 1696 47 11 888 2548 123800183 123798493 0.000000e+00 2614.0
6 TraesCS6B01G189200 chr6D 97.054 679 20 0 51 729 123800873 123800195 0.000000e+00 1144.0
7 TraesCS6B01G189200 chr6D 92.645 775 34 17 2554 3325 123798448 123797694 0.000000e+00 1094.0
8 TraesCS6B01G189200 chr6D 93.506 154 9 1 729 881 104041174 104041327 9.280000e-56 228.0
9 TraesCS6B01G189200 chr6D 100.000 29 0 0 1 29 123800901 123800873 2.000000e-03 54.7
10 TraesCS6B01G189200 chr7A 93.168 161 9 2 729 887 156115992 156115832 5.550000e-58 235.0
11 TraesCS6B01G189200 chr5A 93.671 158 9 1 729 885 367790229 367790072 5.550000e-58 235.0
12 TraesCS6B01G189200 chr3A 94.118 153 8 1 729 880 722287182 722287334 7.170000e-57 231.0
13 TraesCS6B01G189200 chr3D 93.506 154 9 1 729 881 550509444 550509597 9.280000e-56 228.0
14 TraesCS6B01G189200 chr2A 93.506 154 9 1 729 881 469790048 469790201 9.280000e-56 228.0
15 TraesCS6B01G189200 chr1A 91.176 170 11 3 729 897 312863765 312863599 9.280000e-56 228.0
16 TraesCS6B01G189200 chr7D 90.643 171 14 2 729 897 52255661 52255831 3.340000e-55 226.0
17 TraesCS6B01G189200 chr5D 92.949 156 10 1 729 883 559625781 559625936 3.340000e-55 226.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G189200 chr6B 219013308 219016632 3324 True 6141.000 6141 100.00000 1 3325 1 chr6B.!!$R1 3324
1 TraesCS6B01G189200 chr6A 157422883 157426884 4001 False 1233.750 2710 92.99675 1 3325 4 chr6A.!!$F1 3324
2 TraesCS6B01G189200 chr6D 123797694 123800901 3207 True 1226.675 2614 96.14225 1 3325 4 chr6D.!!$R1 3324

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
38 39 1.112315 CGTCTGGCTCTATGGCTCCT 61.112 60.000 0.0 0.0 42.34 3.69 F
1722 1733 1.336755 GACCGTGAATTGCACCTGTTT 59.663 47.619 0.0 0.0 44.85 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1785 1796 0.400213 AGTTCGCCACCCAAATCTCA 59.600 50.0 0.0 0.0 0.0 3.27 R
2656 3463 0.251916 TGAATGTAACTGGAGGCGGG 59.748 55.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.314553 CGTTTTCTTTCGTCTGGCTCTA 58.685 45.455 0.00 0.00 0.00 2.43
33 34 3.526931 TTCTTTCGTCTGGCTCTATGG 57.473 47.619 0.00 0.00 0.00 2.74
38 39 1.112315 CGTCTGGCTCTATGGCTCCT 61.112 60.000 0.00 0.00 42.34 3.69
57 58 2.282555 CCTTACGAATCATGCGTGTCAG 59.717 50.000 0.00 0.00 42.62 3.51
122 124 8.234136 TCATACGTAGATGGAAGTAATCTTGT 57.766 34.615 0.08 0.00 35.92 3.16
164 166 3.016736 GTTCTGCAGGCTGCCTTAAATA 58.983 45.455 34.58 14.75 44.23 1.40
201 203 6.547880 TGCAAGGTATCAGGAAAAGTTTTACA 59.452 34.615 13.08 0.00 0.00 2.41
316 318 4.383118 GCTAGATCACTTGGGTCAAGCTAA 60.383 45.833 7.48 0.00 44.43 3.09
324 326 5.236478 CACTTGGGTCAAGCTAATAATACCG 59.764 44.000 7.48 0.00 44.43 4.02
337 339 5.705609 AATAATACCGGAATTGGCACATC 57.294 39.130 9.46 0.00 39.30 3.06
463 473 4.698583 ATGCATGAGAAACTTCTTGAGC 57.301 40.909 0.00 0.00 37.73 4.26
597 607 5.412526 TGTCATTTCGTGTGACCTTTTAC 57.587 39.130 12.51 0.00 44.10 2.01
729 739 9.522804 TGGACAAATACTGTTTGTTTTGTTATC 57.477 29.630 5.48 0.00 42.11 1.75
731 741 9.744468 GACAAATACTGTTTGTTTTGTTATCCT 57.256 29.630 5.48 0.00 42.11 3.24
764 774 9.750125 AAGTCTTTTTAGACATTTCAAATGGAC 57.250 29.630 14.70 8.92 41.02 4.02
765 775 9.136323 AGTCTTTTTAGACATTTCAAATGGACT 57.864 29.630 14.70 14.18 41.02 3.85
770 780 5.886960 AGACATTTCAAATGGACTACAGC 57.113 39.130 14.70 0.00 0.00 4.40
771 781 5.316167 AGACATTTCAAATGGACTACAGCA 58.684 37.500 14.70 0.00 0.00 4.41
772 782 5.948162 AGACATTTCAAATGGACTACAGCAT 59.052 36.000 14.70 0.00 0.00 3.79
773 783 7.112122 AGACATTTCAAATGGACTACAGCATA 58.888 34.615 14.70 0.00 0.00 3.14
774 784 7.066284 AGACATTTCAAATGGACTACAGCATAC 59.934 37.037 14.70 0.00 0.00 2.39
775 785 5.794687 TTTCAAATGGACTACAGCATACG 57.205 39.130 0.00 0.00 0.00 3.06
776 786 3.792401 TCAAATGGACTACAGCATACGG 58.208 45.455 0.00 0.00 0.00 4.02
777 787 3.449377 TCAAATGGACTACAGCATACGGA 59.551 43.478 0.00 0.00 0.00 4.69
778 788 4.100963 TCAAATGGACTACAGCATACGGAT 59.899 41.667 0.00 0.00 0.00 4.18
779 789 3.667497 ATGGACTACAGCATACGGATG 57.333 47.619 2.22 2.22 39.32 3.51
781 791 2.764010 TGGACTACAGCATACGGATGTT 59.236 45.455 9.90 0.00 45.58 2.71
782 792 3.196901 TGGACTACAGCATACGGATGTTT 59.803 43.478 9.90 0.00 45.58 2.83
783 793 4.189231 GGACTACAGCATACGGATGTTTT 58.811 43.478 9.90 0.00 45.58 2.43
784 794 4.634443 GGACTACAGCATACGGATGTTTTT 59.366 41.667 9.90 0.00 45.58 1.94
785 795 5.813672 GGACTACAGCATACGGATGTTTTTA 59.186 40.000 9.90 0.00 45.58 1.52
786 796 6.018994 GGACTACAGCATACGGATGTTTTTAG 60.019 42.308 9.90 8.64 45.58 1.85
787 797 6.636705 ACTACAGCATACGGATGTTTTTAGA 58.363 36.000 9.90 0.00 45.58 2.10
788 798 5.796350 ACAGCATACGGATGTTTTTAGAC 57.204 39.130 9.90 0.00 45.58 2.59
789 799 5.242434 ACAGCATACGGATGTTTTTAGACA 58.758 37.500 9.90 0.00 45.58 3.41
790 800 5.880332 ACAGCATACGGATGTTTTTAGACAT 59.120 36.000 9.90 0.00 45.58 3.06
791 801 7.045416 ACAGCATACGGATGTTTTTAGACATA 58.955 34.615 9.90 0.00 45.58 2.29
792 802 7.011109 ACAGCATACGGATGTTTTTAGACATAC 59.989 37.037 9.90 0.00 45.58 2.39
793 803 7.224753 CAGCATACGGATGTTTTTAGACATACT 59.775 37.037 9.90 0.00 40.21 2.12
794 804 7.769044 AGCATACGGATGTTTTTAGACATACTT 59.231 33.333 9.90 0.00 40.21 2.24
795 805 8.395633 GCATACGGATGTTTTTAGACATACTTT 58.604 33.333 9.90 0.00 40.21 2.66
796 806 9.702726 CATACGGATGTTTTTAGACATACTTTG 57.297 33.333 0.00 0.00 40.21 2.77
797 807 7.141100 ACGGATGTTTTTAGACATACTTTGG 57.859 36.000 0.00 0.00 40.21 3.28
798 808 6.938030 ACGGATGTTTTTAGACATACTTTGGA 59.062 34.615 0.00 0.00 40.21 3.53
799 809 7.119262 ACGGATGTTTTTAGACATACTTTGGAG 59.881 37.037 0.00 0.00 40.21 3.86
800 810 7.119262 CGGATGTTTTTAGACATACTTTGGAGT 59.881 37.037 0.00 0.00 40.21 3.85
801 811 8.237267 GGATGTTTTTAGACATACTTTGGAGTG 58.763 37.037 0.00 0.00 40.21 3.51
802 812 8.691661 ATGTTTTTAGACATACTTTGGAGTGT 57.308 30.769 0.00 0.00 38.43 3.55
803 813 9.787435 ATGTTTTTAGACATACTTTGGAGTGTA 57.213 29.630 0.00 0.00 38.43 2.90
804 814 9.268268 TGTTTTTAGACATACTTTGGAGTGTAG 57.732 33.333 0.00 0.00 36.60 2.74
805 815 9.485206 GTTTTTAGACATACTTTGGAGTGTAGA 57.515 33.333 0.00 0.00 36.60 2.59
808 818 9.871238 TTTAGACATACTTTGGAGTGTAGATTC 57.129 33.333 0.00 0.00 36.60 2.52
809 819 7.482169 AGACATACTTTGGAGTGTAGATTCA 57.518 36.000 0.00 0.00 36.60 2.57
810 820 7.324178 AGACATACTTTGGAGTGTAGATTCAC 58.676 38.462 0.00 0.00 36.60 3.18
821 831 5.181748 AGTGTAGATTCACTCATTTGCTCC 58.818 41.667 0.00 0.00 44.07 4.70
822 832 4.033358 GTGTAGATTCACTCATTTGCTCCG 59.967 45.833 0.00 0.00 35.68 4.63
823 833 3.340814 AGATTCACTCATTTGCTCCGT 57.659 42.857 0.00 0.00 0.00 4.69
824 834 4.471904 AGATTCACTCATTTGCTCCGTA 57.528 40.909 0.00 0.00 0.00 4.02
825 835 5.028549 AGATTCACTCATTTGCTCCGTAT 57.971 39.130 0.00 0.00 0.00 3.06
826 836 4.813161 AGATTCACTCATTTGCTCCGTATG 59.187 41.667 0.00 0.00 0.00 2.39
827 837 3.610040 TCACTCATTTGCTCCGTATGT 57.390 42.857 0.00 0.00 0.00 2.29
828 838 4.729227 TCACTCATTTGCTCCGTATGTA 57.271 40.909 0.00 0.00 0.00 2.29
829 839 4.682787 TCACTCATTTGCTCCGTATGTAG 58.317 43.478 0.00 0.00 0.00 2.74
830 840 4.159693 TCACTCATTTGCTCCGTATGTAGT 59.840 41.667 0.00 0.00 0.00 2.73
831 841 4.504461 CACTCATTTGCTCCGTATGTAGTC 59.496 45.833 0.00 0.00 0.00 2.59
832 842 4.159693 ACTCATTTGCTCCGTATGTAGTCA 59.840 41.667 0.00 0.00 0.00 3.41
833 843 4.430007 TCATTTGCTCCGTATGTAGTCAC 58.570 43.478 0.00 0.00 0.00 3.67
834 844 4.159693 TCATTTGCTCCGTATGTAGTCACT 59.840 41.667 0.00 0.00 0.00 3.41
835 845 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
836 846 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
837 847 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
838 848 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
839 849 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
840 850 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
841 851 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
842 852 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
843 853 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
844 854 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
845 855 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
846 856 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
847 857 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
848 858 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
850 860 9.778741 ATGTAGTCACTTGTTGAAATCTCTAAA 57.221 29.630 0.00 0.00 35.39 1.85
851 861 9.607988 TGTAGTCACTTGTTGAAATCTCTAAAA 57.392 29.630 0.00 0.00 35.39 1.52
854 864 9.396022 AGTCACTTGTTGAAATCTCTAAAAAGA 57.604 29.630 0.00 0.00 35.39 2.52
855 865 9.439537 GTCACTTGTTGAAATCTCTAAAAAGAC 57.560 33.333 0.00 0.00 35.39 3.01
856 866 9.396022 TCACTTGTTGAAATCTCTAAAAAGACT 57.604 29.630 0.00 0.00 0.00 3.24
874 884 8.539117 AAAAGACTTATATTTGGGAATGGAGG 57.461 34.615 0.00 0.00 0.00 4.30
875 885 6.206180 AGACTTATATTTGGGAATGGAGGG 57.794 41.667 0.00 0.00 0.00 4.30
876 886 5.917087 AGACTTATATTTGGGAATGGAGGGA 59.083 40.000 0.00 0.00 0.00 4.20
877 887 6.044871 AGACTTATATTTGGGAATGGAGGGAG 59.955 42.308 0.00 0.00 0.00 4.30
878 888 5.676811 ACTTATATTTGGGAATGGAGGGAGT 59.323 40.000 0.00 0.00 0.00 3.85
879 889 6.855061 ACTTATATTTGGGAATGGAGGGAGTA 59.145 38.462 0.00 0.00 0.00 2.59
880 890 7.521115 ACTTATATTTGGGAATGGAGGGAGTAT 59.479 37.037 0.00 0.00 0.00 2.12
881 891 8.998957 TTATATTTGGGAATGGAGGGAGTATA 57.001 34.615 0.00 0.00 0.00 1.47
882 892 9.588432 TTATATTTGGGAATGGAGGGAGTATAT 57.412 33.333 0.00 0.00 0.00 0.86
883 893 5.843019 TTTGGGAATGGAGGGAGTATATC 57.157 43.478 0.00 0.00 0.00 1.63
884 894 4.502036 TGGGAATGGAGGGAGTATATCA 57.498 45.455 0.00 0.00 0.00 2.15
885 895 5.041695 TGGGAATGGAGGGAGTATATCAT 57.958 43.478 0.00 0.00 0.00 2.45
886 896 6.178995 TGGGAATGGAGGGAGTATATCATA 57.821 41.667 0.00 0.00 0.00 2.15
948 958 2.842208 TGTTGTTTTCCTTGTCGCTG 57.158 45.000 0.00 0.00 0.00 5.18
1236 1247 4.378770 GGTCTTGTCTGCATGTACACATTG 60.379 45.833 0.00 0.00 33.61 2.82
1241 1252 4.194640 GTCTGCATGTACACATTGGATCT 58.805 43.478 0.00 0.00 33.61 2.75
1404 1415 2.092429 ACTGCCAGTTTCAGAACTCCAA 60.092 45.455 0.00 0.00 44.14 3.53
1436 1447 6.515272 TTCAGAATATTTTCTTGGACCTGC 57.485 37.500 0.00 0.00 40.28 4.85
1624 1635 6.350949 GCTACTTCTTGATGAGATATCCTCCC 60.351 46.154 0.00 0.00 41.25 4.30
1689 1700 1.722034 TCTCAGAAACTGCTGTCCCT 58.278 50.000 0.00 0.00 37.20 4.20
1722 1733 1.336755 GACCGTGAATTGCACCTGTTT 59.663 47.619 0.00 0.00 44.85 2.83
1785 1796 2.239907 GGGATCAGCACCTAAAACCTCT 59.760 50.000 0.00 0.00 0.00 3.69
1986 1997 2.618442 TTGGCGAGTGCATCATATCA 57.382 45.000 0.00 0.00 45.35 2.15
2010 2021 1.657822 GGATTTTCGTGGAGAGCCTC 58.342 55.000 0.00 0.00 34.31 4.70
2055 2066 2.508526 GTGGACTCCAGAACAATGCTT 58.491 47.619 0.00 0.00 32.34 3.91
2061 2072 4.464008 ACTCCAGAACAATGCTTCAAAGA 58.536 39.130 0.00 0.00 0.00 2.52
2062 2073 4.889409 ACTCCAGAACAATGCTTCAAAGAA 59.111 37.500 0.00 0.00 0.00 2.52
2233 2249 7.726216 TGACATCGTATCCATGAATAGTTCTT 58.274 34.615 0.00 0.00 0.00 2.52
2374 2421 7.715249 TGTCTCTGTTAGTAGCTTGTTCATTTT 59.285 33.333 0.00 0.00 0.00 1.82
2531 2578 5.170748 GCCAAGACCAATAATTCAAACTGG 58.829 41.667 0.00 0.00 0.00 4.00
2538 2585 6.306987 ACCAATAATTCAAACTGGTGTCTCT 58.693 36.000 0.00 0.00 38.95 3.10
2548 2595 1.600916 GGTGTCTCTGGTGGTTGCC 60.601 63.158 0.00 0.00 0.00 4.52
2549 2596 1.148273 GTGTCTCTGGTGGTTGCCA 59.852 57.895 0.00 0.00 36.97 4.92
2550 2597 0.465460 GTGTCTCTGGTGGTTGCCAA 60.465 55.000 0.00 0.00 38.18 4.52
2552 2599 0.883833 GTCTCTGGTGGTTGCCAATG 59.116 55.000 0.00 0.00 38.18 2.82
2611 3416 1.538204 CGAACTGTACACCTGCACTGT 60.538 52.381 0.00 0.00 0.00 3.55
2612 3417 2.287970 CGAACTGTACACCTGCACTGTA 60.288 50.000 0.00 0.00 0.00 2.74
2613 3418 3.724374 GAACTGTACACCTGCACTGTAA 58.276 45.455 0.00 0.00 0.00 2.41
2614 3419 3.107642 ACTGTACACCTGCACTGTAAC 57.892 47.619 0.00 0.00 0.00 2.50
2615 3420 2.698797 ACTGTACACCTGCACTGTAACT 59.301 45.455 0.00 0.00 0.00 2.24
2616 3421 3.059884 CTGTACACCTGCACTGTAACTG 58.940 50.000 0.00 0.00 0.00 3.16
2621 3426 5.477607 ACACCTGCACTGTAACTGTATTA 57.522 39.130 0.00 0.00 0.00 0.98
2627 3432 6.649141 CCTGCACTGTAACTGTATTACTGAAA 59.351 38.462 7.61 0.00 0.00 2.69
2630 3435 8.503196 TGCACTGTAACTGTATTACTGAAAATG 58.497 33.333 7.61 1.28 0.00 2.32
2647 3454 8.082242 ACTGAAAATGCTTATACAAAGACCAAC 58.918 33.333 0.00 0.00 0.00 3.77
2656 3463 3.230743 ACAAAGACCAACACAAACTGC 57.769 42.857 0.00 0.00 0.00 4.40
2657 3464 2.094234 ACAAAGACCAACACAAACTGCC 60.094 45.455 0.00 0.00 0.00 4.85
2675 3572 0.251916 CCCGCCTCCAGTTACATTCA 59.748 55.000 0.00 0.00 0.00 2.57
2676 3573 1.134098 CCCGCCTCCAGTTACATTCAT 60.134 52.381 0.00 0.00 0.00 2.57
2687 3584 1.447945 TACATTCATGTGCCACACCG 58.552 50.000 0.00 0.00 41.89 4.94
2696 3593 1.667151 TGCCACACCGGTACACTAC 59.333 57.895 6.87 0.00 36.97 2.73
2697 3594 1.079612 GCCACACCGGTACACTACC 60.080 63.158 6.87 0.00 45.52 3.18
2698 3595 1.538687 GCCACACCGGTACACTACCT 61.539 60.000 6.87 0.00 46.81 3.08
2701 3598 0.883833 ACACCGGTACACTACCTTCG 59.116 55.000 6.87 0.00 46.81 3.79
2702 3599 1.167851 CACCGGTACACTACCTTCGA 58.832 55.000 6.87 0.00 46.81 3.71
2704 3601 0.737219 CCGGTACACTACCTTCGAGG 59.263 60.000 0.00 0.03 46.81 4.63
2705 3602 0.100146 CGGTACACTACCTTCGAGGC 59.900 60.000 0.00 0.00 46.81 4.70
2706 3603 1.472188 GGTACACTACCTTCGAGGCT 58.528 55.000 0.00 0.00 45.52 4.58
2707 3604 1.823610 GGTACACTACCTTCGAGGCTT 59.176 52.381 0.00 0.00 45.52 4.35
2708 3605 3.019564 GGTACACTACCTTCGAGGCTTA 58.980 50.000 0.00 0.00 45.52 3.09
2709 3606 3.181492 GGTACACTACCTTCGAGGCTTAC 60.181 52.174 0.00 0.00 45.52 2.34
2710 3607 2.522185 ACACTACCTTCGAGGCTTACA 58.478 47.619 0.00 0.00 39.63 2.41
2711 3608 2.230750 ACACTACCTTCGAGGCTTACAC 59.769 50.000 0.00 0.00 39.63 2.90
2712 3609 2.230508 CACTACCTTCGAGGCTTACACA 59.769 50.000 0.00 0.00 39.63 3.72
2713 3610 2.230750 ACTACCTTCGAGGCTTACACAC 59.769 50.000 0.00 0.00 39.63 3.82
2714 3611 1.045407 ACCTTCGAGGCTTACACACA 58.955 50.000 0.00 0.00 39.63 3.72
2715 3612 1.414919 ACCTTCGAGGCTTACACACAA 59.585 47.619 0.00 0.00 39.63 3.33
2716 3613 2.069273 CCTTCGAGGCTTACACACAAG 58.931 52.381 0.00 0.00 0.00 3.16
2717 3614 2.288825 CCTTCGAGGCTTACACACAAGA 60.289 50.000 0.00 0.00 0.00 3.02
2718 3615 3.589988 CTTCGAGGCTTACACACAAGAT 58.410 45.455 0.00 0.00 0.00 2.40
2719 3616 2.959516 TCGAGGCTTACACACAAGATG 58.040 47.619 0.00 0.00 0.00 2.90
2731 3628 2.095059 ACACAAGATGCTGCGGAATTTC 60.095 45.455 0.00 0.00 0.00 2.17
2732 3629 1.474077 ACAAGATGCTGCGGAATTTCC 59.526 47.619 5.28 5.28 0.00 3.13
2733 3630 1.747355 CAAGATGCTGCGGAATTTCCT 59.253 47.619 13.45 0.00 33.30 3.36
2734 3631 1.386533 AGATGCTGCGGAATTTCCTG 58.613 50.000 13.45 8.12 33.30 3.86
2745 3651 4.398044 GCGGAATTTCCTGAAGTATTTGGA 59.602 41.667 13.45 0.00 33.30 3.53
2943 3849 2.027625 CGGCGAGTCTTGGTTGACC 61.028 63.158 0.00 0.00 37.66 4.02
2951 3857 3.744660 AGTCTTGGTTGACCTCAATGAC 58.255 45.455 1.34 0.39 38.24 3.06
2954 3860 2.566833 TGGTTGACCTCAATGACCAG 57.433 50.000 1.34 0.00 38.24 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.498167 GCATGATTCGTAAGGAGCCAT 58.502 47.619 0.00 0.00 38.47 4.40
33 34 1.258982 CACGCATGATTCGTAAGGAGC 59.741 52.381 0.00 0.00 38.19 4.70
38 39 1.658596 GCTGACACGCATGATTCGTAA 59.341 47.619 0.00 0.00 38.19 3.18
57 58 5.284660 GCATGTTTAGCAGCGATATAATTGC 59.715 40.000 0.00 0.00 40.06 3.56
72 73 3.441572 CAGGAAGGAACCAGCATGTTTAG 59.558 47.826 0.00 0.00 0.00 1.85
122 124 1.349688 AGAACGGCACAAGGTTCCATA 59.650 47.619 0.69 0.00 42.67 2.74
201 203 6.053650 GTCAACCAAGGTCAGTAGTAAGTTT 58.946 40.000 0.00 0.00 0.00 2.66
208 210 2.404215 CACGTCAACCAAGGTCAGTAG 58.596 52.381 0.00 0.00 0.00 2.57
316 318 3.751175 CGATGTGCCAATTCCGGTATTAT 59.249 43.478 5.94 0.00 0.00 1.28
324 326 0.379669 CAGCTCGATGTGCCAATTCC 59.620 55.000 0.00 0.00 0.00 3.01
443 453 2.816087 GGCTCAAGAAGTTTCTCATGCA 59.184 45.455 0.00 0.00 36.28 3.96
444 454 3.080319 AGGCTCAAGAAGTTTCTCATGC 58.920 45.455 0.00 0.74 36.28 4.06
597 607 6.461816 CGAATGACTTCTTCGAAACTGTATG 58.538 40.000 0.00 0.00 46.36 2.39
738 748 9.750125 GTCCATTTGAAATGTCTAAAAAGACTT 57.250 29.630 15.93 0.00 39.41 3.01
739 749 9.136323 AGTCCATTTGAAATGTCTAAAAAGACT 57.864 29.630 15.93 14.21 39.41 3.24
744 754 8.296713 GCTGTAGTCCATTTGAAATGTCTAAAA 58.703 33.333 15.93 9.20 0.00 1.52
745 755 7.446931 TGCTGTAGTCCATTTGAAATGTCTAAA 59.553 33.333 15.93 11.65 0.00 1.85
746 756 6.939730 TGCTGTAGTCCATTTGAAATGTCTAA 59.060 34.615 15.93 8.54 0.00 2.10
747 757 6.472016 TGCTGTAGTCCATTTGAAATGTCTA 58.528 36.000 15.93 13.97 0.00 2.59
748 758 5.316167 TGCTGTAGTCCATTTGAAATGTCT 58.684 37.500 15.93 14.81 0.00 3.41
749 759 5.627499 TGCTGTAGTCCATTTGAAATGTC 57.373 39.130 15.93 9.10 0.00 3.06
750 760 6.183360 CGTATGCTGTAGTCCATTTGAAATGT 60.183 38.462 15.93 1.43 0.00 2.71
751 761 6.194463 CGTATGCTGTAGTCCATTTGAAATG 58.806 40.000 10.84 10.84 0.00 2.32
752 762 5.296780 CCGTATGCTGTAGTCCATTTGAAAT 59.703 40.000 0.00 0.00 0.00 2.17
753 763 4.634004 CCGTATGCTGTAGTCCATTTGAAA 59.366 41.667 0.00 0.00 0.00 2.69
754 764 4.081365 TCCGTATGCTGTAGTCCATTTGAA 60.081 41.667 0.00 0.00 0.00 2.69
755 765 3.449377 TCCGTATGCTGTAGTCCATTTGA 59.551 43.478 0.00 0.00 0.00 2.69
756 766 3.792401 TCCGTATGCTGTAGTCCATTTG 58.208 45.455 0.00 0.00 0.00 2.32
757 767 4.141711 ACATCCGTATGCTGTAGTCCATTT 60.142 41.667 0.00 0.00 36.50 2.32
758 768 3.388024 ACATCCGTATGCTGTAGTCCATT 59.612 43.478 0.00 0.00 36.50 3.16
759 769 2.965831 ACATCCGTATGCTGTAGTCCAT 59.034 45.455 0.00 0.00 36.50 3.41
760 770 2.384828 ACATCCGTATGCTGTAGTCCA 58.615 47.619 0.00 0.00 36.50 4.02
761 771 3.454371 AACATCCGTATGCTGTAGTCC 57.546 47.619 0.00 0.00 36.50 3.85
762 772 5.796350 AAAAACATCCGTATGCTGTAGTC 57.204 39.130 0.00 0.00 36.50 2.59
763 773 6.534079 GTCTAAAAACATCCGTATGCTGTAGT 59.466 38.462 0.00 0.00 36.50 2.73
764 774 6.533723 TGTCTAAAAACATCCGTATGCTGTAG 59.466 38.462 0.00 0.00 36.50 2.74
765 775 6.399743 TGTCTAAAAACATCCGTATGCTGTA 58.600 36.000 0.00 0.00 36.50 2.74
766 776 5.242434 TGTCTAAAAACATCCGTATGCTGT 58.758 37.500 0.00 0.00 36.50 4.40
767 777 5.794687 TGTCTAAAAACATCCGTATGCTG 57.205 39.130 0.00 0.00 36.50 4.41
768 778 7.272978 AGTATGTCTAAAAACATCCGTATGCT 58.727 34.615 0.00 0.00 40.32 3.79
769 779 7.478520 AGTATGTCTAAAAACATCCGTATGC 57.521 36.000 0.00 0.00 40.32 3.14
770 780 9.702726 CAAAGTATGTCTAAAAACATCCGTATG 57.297 33.333 0.00 0.00 40.32 2.39
771 781 8.889717 CCAAAGTATGTCTAAAAACATCCGTAT 58.110 33.333 0.00 0.00 40.32 3.06
772 782 8.095792 TCCAAAGTATGTCTAAAAACATCCGTA 58.904 33.333 0.00 0.00 40.32 4.02
773 783 6.938030 TCCAAAGTATGTCTAAAAACATCCGT 59.062 34.615 0.00 0.00 40.32 4.69
774 784 7.119262 ACTCCAAAGTATGTCTAAAAACATCCG 59.881 37.037 0.00 0.00 40.32 4.18
775 785 8.237267 CACTCCAAAGTATGTCTAAAAACATCC 58.763 37.037 0.00 0.00 40.32 3.51
776 786 8.784043 ACACTCCAAAGTATGTCTAAAAACATC 58.216 33.333 0.00 0.00 40.32 3.06
777 787 8.691661 ACACTCCAAAGTATGTCTAAAAACAT 57.308 30.769 0.00 0.00 42.41 2.71
778 788 9.268268 CTACACTCCAAAGTATGTCTAAAAACA 57.732 33.333 0.00 0.00 33.25 2.83
779 789 9.485206 TCTACACTCCAAAGTATGTCTAAAAAC 57.515 33.333 0.00 0.00 33.25 2.43
782 792 9.871238 GAATCTACACTCCAAAGTATGTCTAAA 57.129 33.333 0.00 0.00 33.25 1.85
783 793 9.031537 TGAATCTACACTCCAAAGTATGTCTAA 57.968 33.333 0.00 0.00 33.25 2.10
784 794 8.467598 GTGAATCTACACTCCAAAGTATGTCTA 58.532 37.037 0.00 0.00 37.73 2.59
785 795 7.179338 AGTGAATCTACACTCCAAAGTATGTCT 59.821 37.037 0.00 0.00 46.36 3.41
786 796 7.324178 AGTGAATCTACACTCCAAAGTATGTC 58.676 38.462 0.00 0.00 46.36 3.06
787 797 7.246171 AGTGAATCTACACTCCAAAGTATGT 57.754 36.000 0.00 0.00 46.36 2.29
799 809 4.033358 CGGAGCAAATGAGTGAATCTACAC 59.967 45.833 0.00 0.00 40.60 2.90
800 810 4.183865 CGGAGCAAATGAGTGAATCTACA 58.816 43.478 0.00 0.00 0.00 2.74
801 811 4.184629 ACGGAGCAAATGAGTGAATCTAC 58.815 43.478 0.00 0.00 0.00 2.59
802 812 4.471904 ACGGAGCAAATGAGTGAATCTA 57.528 40.909 0.00 0.00 0.00 1.98
803 813 3.340814 ACGGAGCAAATGAGTGAATCT 57.659 42.857 0.00 0.00 0.00 2.40
804 814 4.572389 ACATACGGAGCAAATGAGTGAATC 59.428 41.667 0.00 0.00 0.00 2.52
805 815 4.517285 ACATACGGAGCAAATGAGTGAAT 58.483 39.130 0.00 0.00 0.00 2.57
806 816 3.937814 ACATACGGAGCAAATGAGTGAA 58.062 40.909 0.00 0.00 0.00 3.18
807 817 3.610040 ACATACGGAGCAAATGAGTGA 57.390 42.857 0.00 0.00 0.00 3.41
808 818 4.433615 ACTACATACGGAGCAAATGAGTG 58.566 43.478 0.00 0.00 0.00 3.51
809 819 4.159693 TGACTACATACGGAGCAAATGAGT 59.840 41.667 0.00 0.00 0.00 3.41
810 820 4.504461 GTGACTACATACGGAGCAAATGAG 59.496 45.833 0.00 0.00 0.00 2.90
811 821 4.159693 AGTGACTACATACGGAGCAAATGA 59.840 41.667 0.00 0.00 0.00 2.57
812 822 4.433615 AGTGACTACATACGGAGCAAATG 58.566 43.478 0.00 0.00 0.00 2.32
813 823 4.737855 AGTGACTACATACGGAGCAAAT 57.262 40.909 0.00 0.00 0.00 2.32
814 824 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
815 825 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
816 826 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
817 827 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
818 828 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
819 829 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
820 830 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
821 831 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
822 832 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
824 834 9.778741 TTTAGAGATTTCAACAAGTGACTACAT 57.221 29.630 0.00 0.00 35.39 2.29
825 835 9.607988 TTTTAGAGATTTCAACAAGTGACTACA 57.392 29.630 0.00 0.00 35.39 2.74
828 838 9.396022 TCTTTTTAGAGATTTCAACAAGTGACT 57.604 29.630 0.00 0.00 35.39 3.41
829 839 9.439537 GTCTTTTTAGAGATTTCAACAAGTGAC 57.560 33.333 0.00 0.00 35.39 3.67
830 840 9.396022 AGTCTTTTTAGAGATTTCAACAAGTGA 57.604 29.630 0.00 0.00 0.00 3.41
848 858 8.981659 CCTCCATTCCCAAATATAAGTCTTTTT 58.018 33.333 0.00 0.00 0.00 1.94
849 859 7.565029 CCCTCCATTCCCAAATATAAGTCTTTT 59.435 37.037 0.00 0.00 0.00 2.27
850 860 7.069344 CCCTCCATTCCCAAATATAAGTCTTT 58.931 38.462 0.00 0.00 0.00 2.52
851 861 6.392842 TCCCTCCATTCCCAAATATAAGTCTT 59.607 38.462 0.00 0.00 0.00 3.01
852 862 5.917087 TCCCTCCATTCCCAAATATAAGTCT 59.083 40.000 0.00 0.00 0.00 3.24
853 863 6.183361 ACTCCCTCCATTCCCAAATATAAGTC 60.183 42.308 0.00 0.00 0.00 3.01
854 864 5.676811 ACTCCCTCCATTCCCAAATATAAGT 59.323 40.000 0.00 0.00 0.00 2.24
855 865 6.206180 ACTCCCTCCATTCCCAAATATAAG 57.794 41.667 0.00 0.00 0.00 1.73
856 866 7.905144 ATACTCCCTCCATTCCCAAATATAA 57.095 36.000 0.00 0.00 0.00 0.98
857 867 9.225682 GATATACTCCCTCCATTCCCAAATATA 57.774 37.037 0.00 0.00 0.00 0.86
858 868 7.688534 TGATATACTCCCTCCATTCCCAAATAT 59.311 37.037 0.00 0.00 0.00 1.28
859 869 7.028760 TGATATACTCCCTCCATTCCCAAATA 58.971 38.462 0.00 0.00 0.00 1.40
860 870 5.857283 TGATATACTCCCTCCATTCCCAAAT 59.143 40.000 0.00 0.00 0.00 2.32
861 871 5.231552 TGATATACTCCCTCCATTCCCAAA 58.768 41.667 0.00 0.00 0.00 3.28
862 872 4.838403 TGATATACTCCCTCCATTCCCAA 58.162 43.478 0.00 0.00 0.00 4.12
863 873 4.502036 TGATATACTCCCTCCATTCCCA 57.498 45.455 0.00 0.00 0.00 4.37
864 874 6.206042 AGTATGATATACTCCCTCCATTCCC 58.794 44.000 0.00 0.00 0.00 3.97
865 875 7.181125 ACAAGTATGATATACTCCCTCCATTCC 59.819 40.741 2.27 0.00 0.00 3.01
866 876 8.140112 ACAAGTATGATATACTCCCTCCATTC 57.860 38.462 2.27 0.00 0.00 2.67
867 877 8.511748 AACAAGTATGATATACTCCCTCCATT 57.488 34.615 2.27 0.00 0.00 3.16
868 878 7.181125 GGAACAAGTATGATATACTCCCTCCAT 59.819 40.741 2.27 0.00 0.00 3.41
869 879 6.497259 GGAACAAGTATGATATACTCCCTCCA 59.503 42.308 2.27 0.00 0.00 3.86
870 880 6.497259 TGGAACAAGTATGATATACTCCCTCC 59.503 42.308 2.27 8.35 31.92 4.30
871 881 7.540474 TGGAACAAGTATGATATACTCCCTC 57.460 40.000 2.27 0.70 31.92 4.30
872 882 6.014156 GCTGGAACAAGTATGATATACTCCCT 60.014 42.308 2.27 0.00 38.70 4.20
873 883 6.166982 GCTGGAACAAGTATGATATACTCCC 58.833 44.000 2.27 3.50 38.70 4.30
874 884 6.759272 TGCTGGAACAAGTATGATATACTCC 58.241 40.000 2.27 1.28 38.70 3.85
875 885 9.929180 TTATGCTGGAACAAGTATGATATACTC 57.071 33.333 2.27 0.00 38.70 2.59
879 889 9.797642 TGAATTATGCTGGAACAAGTATGATAT 57.202 29.630 0.00 0.00 38.70 1.63
880 890 9.625747 TTGAATTATGCTGGAACAAGTATGATA 57.374 29.630 0.00 0.00 38.70 2.15
881 891 8.523915 TTGAATTATGCTGGAACAAGTATGAT 57.476 30.769 0.00 0.00 38.70 2.45
882 892 7.936496 TTGAATTATGCTGGAACAAGTATGA 57.064 32.000 0.00 0.00 38.70 2.15
883 893 9.241317 GATTTGAATTATGCTGGAACAAGTATG 57.759 33.333 0.00 0.00 38.70 2.39
884 894 8.416329 GGATTTGAATTATGCTGGAACAAGTAT 58.584 33.333 0.00 0.00 38.70 2.12
885 895 7.395772 TGGATTTGAATTATGCTGGAACAAGTA 59.604 33.333 0.00 0.00 38.70 2.24
886 896 6.211184 TGGATTTGAATTATGCTGGAACAAGT 59.789 34.615 0.00 0.00 38.70 3.16
948 958 4.756084 ACAACTGCAGAAAAGCATAGTC 57.244 40.909 23.35 0.00 44.68 2.59
1047 1058 3.731716 AGCAAGAATGGTGTGCTGA 57.268 47.368 0.00 0.00 46.58 4.26
1236 1247 2.693069 CAGTTCAGTGTGGTGAGATCC 58.307 52.381 0.00 0.00 0.00 3.36
1241 1252 2.121291 TTTGCAGTTCAGTGTGGTGA 57.879 45.000 0.00 0.00 0.00 4.02
1404 1415 9.118300 CCAAGAAAATATTCTGAAGCTAGTGAT 57.882 33.333 0.00 0.00 45.19 3.06
1436 1447 4.527564 CTTGTACTCTTTTGTTGAAGGCG 58.472 43.478 0.00 0.00 0.00 5.52
1545 1556 2.125350 GTCTTCAGGAGGGCTGCG 60.125 66.667 0.00 0.00 0.00 5.18
1550 1561 2.508526 CCTTTGTTGTCTTCAGGAGGG 58.491 52.381 0.00 0.00 0.00 4.30
1624 1635 5.120208 ACGACAAGATGTTCCGAGTAAAATG 59.880 40.000 0.00 0.00 0.00 2.32
1689 1700 3.394674 TCACGGTCTTTTACAGCATCA 57.605 42.857 0.00 0.00 0.00 3.07
1785 1796 0.400213 AGTTCGCCACCCAAATCTCA 59.600 50.000 0.00 0.00 0.00 3.27
1986 1997 0.984230 TCTCCACGAAAATCCCAGCT 59.016 50.000 0.00 0.00 0.00 4.24
2055 2066 6.881570 TGATCTAGCATCATGAGTTCTTTGA 58.118 36.000 0.09 1.59 0.00 2.69
2061 2072 6.598503 TGGAAATGATCTAGCATCATGAGTT 58.401 36.000 14.51 8.37 38.62 3.01
2062 2073 6.183810 TGGAAATGATCTAGCATCATGAGT 57.816 37.500 14.51 6.98 38.62 3.41
2139 2150 3.189287 TCTTTGCCTTCTTGAAAGATCGC 59.811 43.478 0.00 0.01 34.49 4.58
2248 2290 9.713713 ACAAACAAACACCAGTAAACTTTATTT 57.286 25.926 0.00 0.00 0.00 1.40
2312 2356 4.348020 TCTTATGTTCTACCCTGTCCCT 57.652 45.455 0.00 0.00 0.00 4.20
2374 2421 6.429692 CAGCACATAAATCCCCATACGATAAA 59.570 38.462 0.00 0.00 0.00 1.40
2417 2464 9.965902 AGTATATCAGGTTCAGAGTTTTCATTT 57.034 29.630 0.00 0.00 0.00 2.32
2418 2465 9.388506 CAGTATATCAGGTTCAGAGTTTTCATT 57.611 33.333 0.00 0.00 0.00 2.57
2531 2578 0.465460 TTGGCAACCACCAGAGACAC 60.465 55.000 0.00 0.00 41.82 3.67
2538 2585 0.827089 CAGGTCATTGGCAACCACCA 60.827 55.000 24.29 0.00 38.06 4.17
2548 2595 9.817809 AAGTGTACAGTATATAACAGGTCATTG 57.182 33.333 3.00 0.00 0.00 2.82
2549 2596 9.817809 CAAGTGTACAGTATATAACAGGTCATT 57.182 33.333 3.00 0.00 0.00 2.57
2550 2597 8.978472 ACAAGTGTACAGTATATAACAGGTCAT 58.022 33.333 3.00 0.00 0.00 3.06
2552 2599 9.649167 AAACAAGTGTACAGTATATAACAGGTC 57.351 33.333 3.00 0.00 0.00 3.85
2601 3406 5.245301 TCAGTAATACAGTTACAGTGCAGGT 59.755 40.000 0.00 0.00 0.00 4.00
2621 3426 7.759489 TGGTCTTTGTATAAGCATTTTCAGT 57.241 32.000 0.00 0.00 0.00 3.41
2627 3432 6.892658 TGTGTTGGTCTTTGTATAAGCATT 57.107 33.333 0.00 0.00 0.00 3.56
2630 3435 6.636850 CAGTTTGTGTTGGTCTTTGTATAAGC 59.363 38.462 0.00 0.00 0.00 3.09
2638 3445 1.480545 GGGCAGTTTGTGTTGGTCTTT 59.519 47.619 0.00 0.00 0.00 2.52
2647 3454 3.365265 GGAGGCGGGCAGTTTGTG 61.365 66.667 3.78 0.00 0.00 3.33
2656 3463 0.251916 TGAATGTAACTGGAGGCGGG 59.748 55.000 0.00 0.00 0.00 6.13
2657 3464 1.942657 CATGAATGTAACTGGAGGCGG 59.057 52.381 0.00 0.00 0.00 6.13
2675 3572 1.302192 GTGTACCGGTGTGGCACAT 60.302 57.895 24.95 10.30 45.77 3.21
2676 3573 1.114119 TAGTGTACCGGTGTGGCACA 61.114 55.000 19.93 17.96 41.93 4.57
2693 3590 2.230508 TGTGTGTAAGCCTCGAAGGTAG 59.769 50.000 3.38 0.00 37.80 3.18
2694 3591 2.241160 TGTGTGTAAGCCTCGAAGGTA 58.759 47.619 3.38 0.00 37.80 3.08
2696 3593 2.069273 CTTGTGTGTAAGCCTCGAAGG 58.931 52.381 0.00 0.00 38.80 3.46
2697 3594 3.026630 TCTTGTGTGTAAGCCTCGAAG 57.973 47.619 0.00 0.00 0.00 3.79
2698 3595 3.325870 CATCTTGTGTGTAAGCCTCGAA 58.674 45.455 0.00 0.00 0.00 3.71
2701 3598 2.417933 CAGCATCTTGTGTGTAAGCCTC 59.582 50.000 0.00 0.00 0.00 4.70
2702 3599 2.430465 CAGCATCTTGTGTGTAAGCCT 58.570 47.619 0.00 0.00 0.00 4.58
2704 3601 1.464687 CGCAGCATCTTGTGTGTAAGC 60.465 52.381 0.00 0.00 0.00 3.09
2705 3602 1.129251 CCGCAGCATCTTGTGTGTAAG 59.871 52.381 0.00 0.00 0.00 2.34
2706 3603 1.155889 CCGCAGCATCTTGTGTGTAA 58.844 50.000 0.00 0.00 0.00 2.41
2707 3604 0.320050 TCCGCAGCATCTTGTGTGTA 59.680 50.000 0.00 0.00 0.00 2.90
2708 3605 0.534877 TTCCGCAGCATCTTGTGTGT 60.535 50.000 0.00 0.00 0.00 3.72
2709 3606 0.806868 ATTCCGCAGCATCTTGTGTG 59.193 50.000 0.00 0.00 0.00 3.82
2710 3607 1.538047 AATTCCGCAGCATCTTGTGT 58.462 45.000 0.00 0.00 0.00 3.72
2711 3608 2.523015 GAAATTCCGCAGCATCTTGTG 58.477 47.619 0.00 0.00 0.00 3.33
2712 3609 1.474077 GGAAATTCCGCAGCATCTTGT 59.526 47.619 0.00 0.00 0.00 3.16
2713 3610 1.747355 AGGAAATTCCGCAGCATCTTG 59.253 47.619 6.35 0.00 42.75 3.02
2714 3611 1.747355 CAGGAAATTCCGCAGCATCTT 59.253 47.619 6.35 0.00 42.75 2.40
2715 3612 1.065199 TCAGGAAATTCCGCAGCATCT 60.065 47.619 6.35 0.00 42.75 2.90
2716 3613 1.382522 TCAGGAAATTCCGCAGCATC 58.617 50.000 6.35 0.00 42.75 3.91
2717 3614 1.747355 CTTCAGGAAATTCCGCAGCAT 59.253 47.619 6.35 0.00 42.75 3.79
2718 3615 1.167851 CTTCAGGAAATTCCGCAGCA 58.832 50.000 6.35 0.00 42.75 4.41
2719 3616 1.168714 ACTTCAGGAAATTCCGCAGC 58.831 50.000 6.35 0.00 42.75 5.25
2731 3628 3.557595 GTCGCATCTCCAAATACTTCAGG 59.442 47.826 0.00 0.00 0.00 3.86
2732 3629 4.437239 AGTCGCATCTCCAAATACTTCAG 58.563 43.478 0.00 0.00 0.00 3.02
2733 3630 4.081697 TGAGTCGCATCTCCAAATACTTCA 60.082 41.667 3.26 0.00 33.93 3.02
2734 3631 4.433615 TGAGTCGCATCTCCAAATACTTC 58.566 43.478 3.26 0.00 33.93 3.01
2745 3651 2.146342 CCAACTGTTTGAGTCGCATCT 58.854 47.619 0.00 0.00 34.24 2.90
2943 3849 1.746615 CGGGTGCCTGGTCATTGAG 60.747 63.158 0.00 0.00 0.00 3.02
3015 3921 1.384989 GGCTCGAGAAGACGATCCCA 61.385 60.000 18.75 0.00 40.99 4.37
3101 4007 1.995991 CACGAATTCTACCACGCCG 59.004 57.895 3.52 0.00 0.00 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.