Multiple sequence alignment - TraesCS6B01G189100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G189100 chr6B 100.000 3323 0 0 1 3323 219011556 219014878 0.000000e+00 6137.0
1 TraesCS6B01G189100 chr6D 92.213 1862 72 33 675 2524 123796648 123798448 0.000000e+00 2567.0
2 TraesCS6B01G189100 chr6D 92.150 828 26 10 2530 3323 123798493 123799315 0.000000e+00 1133.0
3 TraesCS6B01G189100 chr6D 93.333 315 14 5 323 630 123794224 123794538 3.020000e-125 459.0
4 TraesCS6B01G189100 chr6D 93.333 105 6 1 578 682 123795541 123795644 1.600000e-33 154.0
5 TraesCS6B01G189100 chr6A 95.776 947 38 2 1425 2370 157427212 157426267 0.000000e+00 1526.0
6 TraesCS6B01G189100 chr6A 95.226 796 27 4 2530 3323 157425286 157424500 0.000000e+00 1249.0
7 TraesCS6B01G189100 chr6A 95.570 632 18 3 808 1430 157441264 157440634 0.000000e+00 1003.0
8 TraesCS6B01G189100 chr6A 85.412 425 26 16 369 761 157441797 157441377 3.090000e-110 409.0
9 TraesCS6B01G189100 chr6A 85.965 114 9 5 2411 2524 157426156 157426050 7.530000e-22 115.0
10 TraesCS6B01G189100 chr1A 95.722 187 6 2 1 186 571871321 571871506 1.940000e-77 300.0
11 TraesCS6B01G189100 chr1A 91.045 67 5 1 968 1034 58935539 58935474 4.570000e-14 89.8
12 TraesCS6B01G189100 chr5B 94.652 187 9 1 1 186 694231774 694231960 4.190000e-74 289.0
13 TraesCS6B01G189100 chr1B 94.118 187 10 1 1 186 629688443 629688629 1.950000e-72 283.0
14 TraesCS6B01G189100 chr1B 93.617 188 10 2 1 186 671239381 671239568 2.520000e-71 279.0
15 TraesCS6B01G189100 chr3A 93.651 189 10 2 2 189 350200668 350200481 7.020000e-72 281.0
16 TraesCS6B01G189100 chr3B 93.583 187 10 2 1 186 803458797 803458982 9.080000e-71 278.0
17 TraesCS6B01G189100 chr3B 92.670 191 11 3 1 189 803355313 803355502 4.220000e-69 272.0
18 TraesCS6B01G189100 chrUn 92.670 191 11 3 1 189 292088943 292089132 4.220000e-69 272.0
19 TraesCS6B01G189100 chrUn 92.670 191 11 3 1 189 312305518 312305707 4.220000e-69 272.0
20 TraesCS6B01G189100 chr3D 92.969 128 8 1 1664 1790 405819884 405820011 5.660000e-43 185.0
21 TraesCS6B01G189100 chr1D 94.030 67 3 1 968 1034 19462617 19462682 2.110000e-17 100.0
22 TraesCS6B01G189100 chr5A 93.939 66 3 1 968 1033 626204634 626204570 7.590000e-17 99.0
23 TraesCS6B01G189100 chr4B 92.537 67 4 1 968 1034 122212030 122211965 9.810000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G189100 chr6B 219011556 219014878 3322 False 6137.000000 6137 100.000000 1 3323 1 chr6B.!!$F1 3322
1 TraesCS6B01G189100 chr6D 123794224 123799315 5091 False 1078.250000 2567 92.757250 323 3323 4 chr6D.!!$F1 3000
2 TraesCS6B01G189100 chr6A 157424500 157427212 2712 True 963.333333 1526 92.322333 1425 3323 3 chr6A.!!$R1 1898
3 TraesCS6B01G189100 chr6A 157440634 157441797 1163 True 706.000000 1003 90.491000 369 1430 2 chr6A.!!$R2 1061

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
311 312 0.107165 GGCCTATCAAACGCCTCCTT 60.107 55.0 0.0 0.0 39.7 3.36 F
318 319 0.109597 CAAACGCCTCCTTGATGCAC 60.110 55.0 0.0 0.0 0.0 4.57 F
390 391 0.906066 TTGCAGGCCTCCGTACATTA 59.094 50.0 0.0 0.0 0.0 1.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1601 3807 1.545706 GGGCTCCTCCTCGTCTTTGT 61.546 60.000 0.0 0.0 34.39 2.83 R
2133 4339 2.027625 CGGCGAGTCTTGGTTGACC 61.028 63.158 0.0 0.0 37.66 4.02 R
2371 4586 0.100146 CGGTACACTACCTTCGAGGC 59.900 60.000 0.0 0.0 46.81 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.851976 GGCATAGTGTCGGTCTATAGG 57.148 52.381 0.00 0.00 0.00 2.57
21 22 3.418995 GGCATAGTGTCGGTCTATAGGA 58.581 50.000 0.00 0.00 0.00 2.94
22 23 3.190953 GGCATAGTGTCGGTCTATAGGAC 59.809 52.174 0.00 0.46 43.79 3.85
23 24 4.073549 GCATAGTGTCGGTCTATAGGACT 58.926 47.826 0.00 0.00 43.97 3.85
24 25 4.154556 GCATAGTGTCGGTCTATAGGACTC 59.845 50.000 0.00 1.36 43.97 3.36
25 26 5.553123 CATAGTGTCGGTCTATAGGACTCT 58.447 45.833 13.29 13.29 43.97 3.24
26 27 6.699366 CATAGTGTCGGTCTATAGGACTCTA 58.301 44.000 15.58 15.58 43.97 2.43
27 28 4.959723 AGTGTCGGTCTATAGGACTCTAC 58.040 47.826 0.00 0.00 43.97 2.59
28 29 4.655186 AGTGTCGGTCTATAGGACTCTACT 59.345 45.833 0.00 0.00 43.97 2.57
29 30 4.751098 GTGTCGGTCTATAGGACTCTACTG 59.249 50.000 0.00 0.00 43.97 2.74
30 31 4.408270 TGTCGGTCTATAGGACTCTACTGT 59.592 45.833 0.00 0.00 43.97 3.55
31 32 5.104610 TGTCGGTCTATAGGACTCTACTGTT 60.105 44.000 0.00 0.00 43.97 3.16
32 33 5.236911 GTCGGTCTATAGGACTCTACTGTTG 59.763 48.000 0.00 0.00 43.97 3.33
33 34 4.023878 CGGTCTATAGGACTCTACTGTTGC 60.024 50.000 0.00 0.00 43.97 4.17
34 35 4.278919 GGTCTATAGGACTCTACTGTTGCC 59.721 50.000 0.00 0.00 43.97 4.52
35 36 4.023878 GTCTATAGGACTCTACTGTTGCCG 60.024 50.000 0.00 0.00 41.46 5.69
36 37 2.211250 TAGGACTCTACTGTTGCCGT 57.789 50.000 0.00 0.00 0.00 5.68
37 38 1.339097 AGGACTCTACTGTTGCCGTT 58.661 50.000 0.00 0.00 0.00 4.44
38 39 1.692519 AGGACTCTACTGTTGCCGTTT 59.307 47.619 0.00 0.00 0.00 3.60
39 40 2.104281 AGGACTCTACTGTTGCCGTTTT 59.896 45.455 0.00 0.00 0.00 2.43
40 41 2.223377 GGACTCTACTGTTGCCGTTTTG 59.777 50.000 0.00 0.00 0.00 2.44
41 42 2.870411 GACTCTACTGTTGCCGTTTTGT 59.130 45.455 0.00 0.00 0.00 2.83
42 43 2.870411 ACTCTACTGTTGCCGTTTTGTC 59.130 45.455 0.00 0.00 0.00 3.18
43 44 1.862201 TCTACTGTTGCCGTTTTGTCG 59.138 47.619 0.00 0.00 0.00 4.35
56 57 6.757026 CCGTTTTGTCGGTTTTTATTTGAT 57.243 33.333 0.00 0.00 44.77 2.57
57 58 6.576910 CCGTTTTGTCGGTTTTTATTTGATG 58.423 36.000 0.00 0.00 44.77 3.07
58 59 6.346199 CCGTTTTGTCGGTTTTTATTTGATGG 60.346 38.462 0.00 0.00 44.77 3.51
59 60 6.199342 CGTTTTGTCGGTTTTTATTTGATGGT 59.801 34.615 0.00 0.00 0.00 3.55
60 61 7.254151 CGTTTTGTCGGTTTTTATTTGATGGTT 60.254 33.333 0.00 0.00 0.00 3.67
61 62 8.391859 GTTTTGTCGGTTTTTATTTGATGGTTT 58.608 29.630 0.00 0.00 0.00 3.27
62 63 8.494016 TTTGTCGGTTTTTATTTGATGGTTTT 57.506 26.923 0.00 0.00 0.00 2.43
63 64 8.494016 TTGTCGGTTTTTATTTGATGGTTTTT 57.506 26.923 0.00 0.00 0.00 1.94
83 84 5.699097 TTTTTGATCGGACTTTCGGATTT 57.301 34.783 0.00 0.00 36.70 2.17
84 85 4.678509 TTTGATCGGACTTTCGGATTTG 57.321 40.909 0.00 0.00 36.70 2.32
85 86 3.603158 TGATCGGACTTTCGGATTTGA 57.397 42.857 0.00 0.00 36.70 2.69
86 87 3.259064 TGATCGGACTTTCGGATTTGAC 58.741 45.455 0.00 0.00 36.70 3.18
87 88 3.056107 TGATCGGACTTTCGGATTTGACT 60.056 43.478 0.00 0.00 36.70 3.41
88 89 2.683968 TCGGACTTTCGGATTTGACTG 58.316 47.619 0.00 0.00 0.00 3.51
89 90 2.036733 TCGGACTTTCGGATTTGACTGT 59.963 45.455 0.00 0.00 0.00 3.55
90 91 2.157668 CGGACTTTCGGATTTGACTGTG 59.842 50.000 0.00 0.00 0.00 3.66
91 92 3.139077 GGACTTTCGGATTTGACTGTGT 58.861 45.455 0.00 0.00 0.00 3.72
92 93 3.058914 GGACTTTCGGATTTGACTGTGTG 60.059 47.826 0.00 0.00 0.00 3.82
93 94 2.290641 ACTTTCGGATTTGACTGTGTGC 59.709 45.455 0.00 0.00 0.00 4.57
94 95 1.960417 TTCGGATTTGACTGTGTGCA 58.040 45.000 0.00 0.00 0.00 4.57
95 96 2.183478 TCGGATTTGACTGTGTGCAT 57.817 45.000 0.00 0.00 0.00 3.96
96 97 2.076100 TCGGATTTGACTGTGTGCATC 58.924 47.619 0.00 0.00 0.00 3.91
97 98 2.079158 CGGATTTGACTGTGTGCATCT 58.921 47.619 0.00 0.00 0.00 2.90
98 99 2.485426 CGGATTTGACTGTGTGCATCTT 59.515 45.455 0.00 0.00 0.00 2.40
99 100 3.684305 CGGATTTGACTGTGTGCATCTTA 59.316 43.478 0.00 0.00 0.00 2.10
100 101 4.201753 CGGATTTGACTGTGTGCATCTTAG 60.202 45.833 0.00 0.00 0.00 2.18
101 102 4.697352 GGATTTGACTGTGTGCATCTTAGT 59.303 41.667 0.00 0.00 0.00 2.24
102 103 5.182001 GGATTTGACTGTGTGCATCTTAGTT 59.818 40.000 0.00 0.00 0.00 2.24
103 104 6.371548 GGATTTGACTGTGTGCATCTTAGTTA 59.628 38.462 0.00 0.00 0.00 2.24
104 105 7.066284 GGATTTGACTGTGTGCATCTTAGTTAT 59.934 37.037 0.00 0.00 0.00 1.89
105 106 6.726258 TTGACTGTGTGCATCTTAGTTATG 57.274 37.500 0.00 0.00 0.00 1.90
114 115 2.890808 TCTTAGTTATGCAGAGGCCG 57.109 50.000 0.00 0.00 40.13 6.13
115 116 1.412710 TCTTAGTTATGCAGAGGCCGG 59.587 52.381 0.00 0.00 40.13 6.13
116 117 0.468226 TTAGTTATGCAGAGGCCGGG 59.532 55.000 2.18 0.00 40.13 5.73
117 118 0.689745 TAGTTATGCAGAGGCCGGGT 60.690 55.000 2.18 0.00 40.13 5.28
118 119 1.819632 GTTATGCAGAGGCCGGGTG 60.820 63.158 2.18 0.00 40.13 4.61
119 120 2.297895 TTATGCAGAGGCCGGGTGT 61.298 57.895 2.18 0.00 40.13 4.16
120 121 1.847798 TTATGCAGAGGCCGGGTGTT 61.848 55.000 2.18 0.00 40.13 3.32
121 122 0.978667 TATGCAGAGGCCGGGTGTTA 60.979 55.000 2.18 0.00 40.13 2.41
122 123 2.436115 GCAGAGGCCGGGTGTTAC 60.436 66.667 2.18 0.00 0.00 2.50
123 124 2.955881 GCAGAGGCCGGGTGTTACT 61.956 63.158 2.18 0.00 0.00 2.24
124 125 1.218316 CAGAGGCCGGGTGTTACTC 59.782 63.158 2.18 0.00 0.00 2.59
125 126 1.229082 AGAGGCCGGGTGTTACTCA 60.229 57.895 2.18 0.00 0.00 3.41
126 127 0.617820 AGAGGCCGGGTGTTACTCAT 60.618 55.000 2.18 0.00 0.00 2.90
127 128 1.117150 GAGGCCGGGTGTTACTCATA 58.883 55.000 2.18 0.00 0.00 2.15
128 129 1.483415 GAGGCCGGGTGTTACTCATAA 59.517 52.381 2.18 0.00 0.00 1.90
129 130 2.104281 GAGGCCGGGTGTTACTCATAAT 59.896 50.000 2.18 0.00 0.00 1.28
130 131 2.158813 AGGCCGGGTGTTACTCATAATG 60.159 50.000 2.18 0.00 0.00 1.90
131 132 1.602377 GCCGGGTGTTACTCATAATGC 59.398 52.381 2.18 0.00 0.00 3.56
132 133 2.745152 GCCGGGTGTTACTCATAATGCT 60.745 50.000 2.18 0.00 0.00 3.79
133 134 3.541632 CCGGGTGTTACTCATAATGCTT 58.458 45.455 0.00 0.00 0.00 3.91
134 135 3.945285 CCGGGTGTTACTCATAATGCTTT 59.055 43.478 0.00 0.00 0.00 3.51
135 136 5.120399 CCGGGTGTTACTCATAATGCTTTA 58.880 41.667 0.00 0.00 0.00 1.85
136 137 5.763204 CCGGGTGTTACTCATAATGCTTTAT 59.237 40.000 0.00 0.00 0.00 1.40
137 138 6.262273 CCGGGTGTTACTCATAATGCTTTATT 59.738 38.462 0.00 0.00 0.00 1.40
138 139 7.352739 CGGGTGTTACTCATAATGCTTTATTC 58.647 38.462 2.22 0.00 0.00 1.75
139 140 7.519970 CGGGTGTTACTCATAATGCTTTATTCC 60.520 40.741 2.22 0.00 0.00 3.01
140 141 7.284489 GGGTGTTACTCATAATGCTTTATTCCA 59.716 37.037 2.22 0.00 0.00 3.53
141 142 8.129211 GGTGTTACTCATAATGCTTTATTCCAC 58.871 37.037 2.22 4.19 0.00 4.02
142 143 8.893727 GTGTTACTCATAATGCTTTATTCCACT 58.106 33.333 2.22 0.00 0.00 4.00
143 144 9.461312 TGTTACTCATAATGCTTTATTCCACTT 57.539 29.630 2.22 0.00 0.00 3.16
144 145 9.722056 GTTACTCATAATGCTTTATTCCACTTG 57.278 33.333 2.22 0.00 0.00 3.16
145 146 9.679661 TTACTCATAATGCTTTATTCCACTTGA 57.320 29.630 2.22 0.00 0.00 3.02
146 147 8.757982 ACTCATAATGCTTTATTCCACTTGAT 57.242 30.769 2.22 0.00 0.00 2.57
147 148 9.851686 ACTCATAATGCTTTATTCCACTTGATA 57.148 29.630 2.22 0.00 0.00 2.15
149 150 9.851686 TCATAATGCTTTATTCCACTTGATACT 57.148 29.630 2.22 0.00 0.00 2.12
153 154 9.632638 AATGCTTTATTCCACTTGATACTACAT 57.367 29.630 0.00 0.00 0.00 2.29
154 155 9.632638 ATGCTTTATTCCACTTGATACTACATT 57.367 29.630 0.00 0.00 0.00 2.71
155 156 9.461312 TGCTTTATTCCACTTGATACTACATTT 57.539 29.630 0.00 0.00 0.00 2.32
192 193 9.542462 AAATCGTCCTTTATCGAAAATATCTGA 57.458 29.630 0.00 0.00 39.45 3.27
193 194 9.542462 AATCGTCCTTTATCGAAAATATCTGAA 57.458 29.630 0.00 0.00 39.45 3.02
194 195 8.575565 TCGTCCTTTATCGAAAATATCTGAAG 57.424 34.615 0.00 0.00 33.13 3.02
195 196 7.169308 TCGTCCTTTATCGAAAATATCTGAAGC 59.831 37.037 0.00 0.00 33.13 3.86
196 197 7.169982 CGTCCTTTATCGAAAATATCTGAAGCT 59.830 37.037 0.00 0.00 0.00 3.74
197 198 9.477484 GTCCTTTATCGAAAATATCTGAAGCTA 57.523 33.333 0.00 0.00 0.00 3.32
203 204 7.482654 TCGAAAATATCTGAAGCTATGTTGG 57.517 36.000 0.00 0.00 0.00 3.77
204 205 7.272244 TCGAAAATATCTGAAGCTATGTTGGA 58.728 34.615 0.00 0.00 0.00 3.53
205 206 7.224753 TCGAAAATATCTGAAGCTATGTTGGAC 59.775 37.037 0.00 0.00 0.00 4.02
206 207 6.851222 AAATATCTGAAGCTATGTTGGACG 57.149 37.500 0.00 0.00 0.00 4.79
207 208 5.791336 ATATCTGAAGCTATGTTGGACGA 57.209 39.130 0.00 0.00 0.00 4.20
208 209 4.679373 ATCTGAAGCTATGTTGGACGAT 57.321 40.909 0.00 0.00 0.00 3.73
209 210 4.471904 TCTGAAGCTATGTTGGACGATT 57.528 40.909 0.00 0.00 0.00 3.34
210 211 4.832248 TCTGAAGCTATGTTGGACGATTT 58.168 39.130 0.00 0.00 0.00 2.17
211 212 5.245531 TCTGAAGCTATGTTGGACGATTTT 58.754 37.500 0.00 0.00 0.00 1.82
212 213 5.705441 TCTGAAGCTATGTTGGACGATTTTT 59.295 36.000 0.00 0.00 0.00 1.94
213 214 6.876789 TCTGAAGCTATGTTGGACGATTTTTA 59.123 34.615 0.00 0.00 0.00 1.52
214 215 7.552687 TCTGAAGCTATGTTGGACGATTTTTAT 59.447 33.333 0.00 0.00 0.00 1.40
215 216 7.693952 TGAAGCTATGTTGGACGATTTTTATC 58.306 34.615 0.00 0.00 0.00 1.75
216 217 7.335673 TGAAGCTATGTTGGACGATTTTTATCA 59.664 33.333 0.00 0.00 0.00 2.15
217 218 7.624360 AGCTATGTTGGACGATTTTTATCAA 57.376 32.000 0.00 0.00 0.00 2.57
218 219 8.050778 AGCTATGTTGGACGATTTTTATCAAA 57.949 30.769 0.00 0.00 0.00 2.69
219 220 8.686334 AGCTATGTTGGACGATTTTTATCAAAT 58.314 29.630 0.00 0.00 0.00 2.32
220 221 8.958043 GCTATGTTGGACGATTTTTATCAAATC 58.042 33.333 0.00 0.00 34.26 2.17
222 223 8.915871 ATGTTGGACGATTTTTATCAAATCTG 57.084 30.769 0.00 3.02 35.17 2.90
223 224 7.881142 TGTTGGACGATTTTTATCAAATCTGT 58.119 30.769 0.00 5.53 35.17 3.41
224 225 8.020819 TGTTGGACGATTTTTATCAAATCTGTC 58.979 33.333 15.90 15.90 38.24 3.51
225 226 7.921786 TGGACGATTTTTATCAAATCTGTCT 57.078 32.000 19.62 1.07 38.56 3.41
226 227 8.335532 TGGACGATTTTTATCAAATCTGTCTT 57.664 30.769 19.62 0.67 38.56 3.01
227 228 8.792633 TGGACGATTTTTATCAAATCTGTCTTT 58.207 29.630 19.62 0.00 38.56 2.52
250 251 9.124807 CTTTAAAATTTCCTTTAACCAGTAGCG 57.875 33.333 0.00 0.00 31.98 4.26
251 252 6.644248 AAAATTTCCTTTAACCAGTAGCGT 57.356 33.333 0.00 0.00 0.00 5.07
252 253 5.874895 AATTTCCTTTAACCAGTAGCGTC 57.125 39.130 0.00 0.00 0.00 5.19
253 254 4.339872 TTTCCTTTAACCAGTAGCGTCA 57.660 40.909 0.00 0.00 0.00 4.35
254 255 3.308438 TCCTTTAACCAGTAGCGTCAC 57.692 47.619 0.00 0.00 0.00 3.67
255 256 2.028748 TCCTTTAACCAGTAGCGTCACC 60.029 50.000 0.00 0.00 0.00 4.02
256 257 2.028385 CCTTTAACCAGTAGCGTCACCT 60.028 50.000 0.00 0.00 0.00 4.00
257 258 3.251571 CTTTAACCAGTAGCGTCACCTC 58.748 50.000 0.00 0.00 0.00 3.85
258 259 1.180029 TAACCAGTAGCGTCACCTCC 58.820 55.000 0.00 0.00 0.00 4.30
259 260 0.542232 AACCAGTAGCGTCACCTCCT 60.542 55.000 0.00 0.00 0.00 3.69
260 261 0.542232 ACCAGTAGCGTCACCTCCTT 60.542 55.000 0.00 0.00 0.00 3.36
261 262 0.108615 CCAGTAGCGTCACCTCCTTG 60.109 60.000 0.00 0.00 0.00 3.61
262 263 0.603569 CAGTAGCGTCACCTCCTTGT 59.396 55.000 0.00 0.00 0.00 3.16
263 264 1.000955 CAGTAGCGTCACCTCCTTGTT 59.999 52.381 0.00 0.00 0.00 2.83
264 265 1.692519 AGTAGCGTCACCTCCTTGTTT 59.307 47.619 0.00 0.00 0.00 2.83
265 266 2.067013 GTAGCGTCACCTCCTTGTTTC 58.933 52.381 0.00 0.00 0.00 2.78
266 267 0.468226 AGCGTCACCTCCTTGTTTCA 59.532 50.000 0.00 0.00 0.00 2.69
267 268 1.072331 AGCGTCACCTCCTTGTTTCAT 59.928 47.619 0.00 0.00 0.00 2.57
268 269 1.197721 GCGTCACCTCCTTGTTTCATG 59.802 52.381 0.00 0.00 0.00 3.07
269 270 1.197721 CGTCACCTCCTTGTTTCATGC 59.802 52.381 0.00 0.00 0.00 4.06
270 271 1.197721 GTCACCTCCTTGTTTCATGCG 59.802 52.381 0.00 0.00 0.00 4.73
271 272 1.071542 TCACCTCCTTGTTTCATGCGA 59.928 47.619 0.00 0.00 0.00 5.10
272 273 1.197721 CACCTCCTTGTTTCATGCGAC 59.802 52.381 0.00 0.00 0.00 5.19
273 274 1.072331 ACCTCCTTGTTTCATGCGACT 59.928 47.619 0.00 0.00 0.00 4.18
274 275 2.154462 CCTCCTTGTTTCATGCGACTT 58.846 47.619 0.00 0.00 0.00 3.01
275 276 2.554032 CCTCCTTGTTTCATGCGACTTT 59.446 45.455 0.00 0.00 0.00 2.66
276 277 3.365364 CCTCCTTGTTTCATGCGACTTTC 60.365 47.826 0.00 0.00 0.00 2.62
277 278 2.223144 TCCTTGTTTCATGCGACTTTCG 59.777 45.455 0.00 0.00 43.89 3.46
278 279 2.032030 CCTTGTTTCATGCGACTTTCGT 60.032 45.455 0.00 0.00 42.81 3.85
279 280 2.661504 TGTTTCATGCGACTTTCGTG 57.338 45.000 0.00 0.00 42.81 4.35
280 281 1.937223 TGTTTCATGCGACTTTCGTGT 59.063 42.857 0.00 0.00 42.81 4.49
281 282 2.353269 TGTTTCATGCGACTTTCGTGTT 59.647 40.909 0.00 0.00 42.81 3.32
282 283 2.941891 TTCATGCGACTTTCGTGTTC 57.058 45.000 0.00 0.00 42.81 3.18
283 284 2.148916 TCATGCGACTTTCGTGTTCT 57.851 45.000 0.00 0.00 42.81 3.01
284 285 1.792367 TCATGCGACTTTCGTGTTCTG 59.208 47.619 0.00 0.00 42.81 3.02
285 286 1.792367 CATGCGACTTTCGTGTTCTGA 59.208 47.619 0.00 0.00 42.81 3.27
286 287 1.487482 TGCGACTTTCGTGTTCTGAG 58.513 50.000 0.00 0.00 42.81 3.35
287 288 1.202371 TGCGACTTTCGTGTTCTGAGT 60.202 47.619 0.00 0.00 42.81 3.41
288 289 1.859080 GCGACTTTCGTGTTCTGAGTT 59.141 47.619 0.00 0.00 42.81 3.01
289 290 2.284417 GCGACTTTCGTGTTCTGAGTTT 59.716 45.455 0.00 0.00 42.81 2.66
290 291 3.242316 GCGACTTTCGTGTTCTGAGTTTT 60.242 43.478 0.00 0.00 42.81 2.43
291 292 4.726876 GCGACTTTCGTGTTCTGAGTTTTT 60.727 41.667 0.00 0.00 42.81 1.94
292 293 4.723862 CGACTTTCGTGTTCTGAGTTTTTG 59.276 41.667 0.00 0.00 34.72 2.44
293 294 4.981794 ACTTTCGTGTTCTGAGTTTTTGG 58.018 39.130 0.00 0.00 0.00 3.28
294 295 3.414549 TTCGTGTTCTGAGTTTTTGGC 57.585 42.857 0.00 0.00 0.00 4.52
295 296 1.673920 TCGTGTTCTGAGTTTTTGGCC 59.326 47.619 0.00 0.00 0.00 5.36
296 297 1.676006 CGTGTTCTGAGTTTTTGGCCT 59.324 47.619 3.32 0.00 0.00 5.19
297 298 2.875933 CGTGTTCTGAGTTTTTGGCCTA 59.124 45.455 3.32 0.00 0.00 3.93
298 299 3.502211 CGTGTTCTGAGTTTTTGGCCTAT 59.498 43.478 3.32 0.00 0.00 2.57
299 300 4.378459 CGTGTTCTGAGTTTTTGGCCTATC 60.378 45.833 3.32 0.00 0.00 2.08
300 301 4.518970 GTGTTCTGAGTTTTTGGCCTATCA 59.481 41.667 3.32 0.00 0.00 2.15
301 302 5.009610 GTGTTCTGAGTTTTTGGCCTATCAA 59.990 40.000 3.32 0.00 0.00 2.57
302 303 5.596361 TGTTCTGAGTTTTTGGCCTATCAAA 59.404 36.000 3.32 0.00 35.15 2.69
303 304 5.705609 TCTGAGTTTTTGGCCTATCAAAC 57.294 39.130 3.32 5.31 36.49 2.93
304 305 4.215399 TCTGAGTTTTTGGCCTATCAAACG 59.785 41.667 3.32 0.00 36.49 3.60
305 306 3.242518 GAGTTTTTGGCCTATCAAACGC 58.757 45.455 3.32 3.37 36.49 4.84
306 307 2.029380 AGTTTTTGGCCTATCAAACGCC 60.029 45.455 3.32 0.00 43.32 5.68
307 308 1.917872 TTTTGGCCTATCAAACGCCT 58.082 45.000 3.32 0.00 43.42 5.52
308 309 1.459450 TTTGGCCTATCAAACGCCTC 58.541 50.000 3.32 0.00 43.42 4.70
309 310 0.393808 TTGGCCTATCAAACGCCTCC 60.394 55.000 3.32 0.00 43.42 4.30
310 311 1.271840 TGGCCTATCAAACGCCTCCT 61.272 55.000 3.32 0.00 43.42 3.69
311 312 0.107165 GGCCTATCAAACGCCTCCTT 60.107 55.000 0.00 0.00 39.70 3.36
312 313 1.017387 GCCTATCAAACGCCTCCTTG 58.983 55.000 0.00 0.00 0.00 3.61
313 314 1.406887 GCCTATCAAACGCCTCCTTGA 60.407 52.381 0.00 0.00 36.08 3.02
314 315 2.746472 GCCTATCAAACGCCTCCTTGAT 60.746 50.000 3.11 3.11 43.15 2.57
315 316 2.874701 CCTATCAAACGCCTCCTTGATG 59.125 50.000 7.40 0.00 41.30 3.07
316 317 1.098050 ATCAAACGCCTCCTTGATGC 58.902 50.000 0.00 0.00 40.06 3.91
317 318 0.250684 TCAAACGCCTCCTTGATGCA 60.251 50.000 0.00 0.00 0.00 3.96
318 319 0.109597 CAAACGCCTCCTTGATGCAC 60.110 55.000 0.00 0.00 0.00 4.57
319 320 1.577328 AAACGCCTCCTTGATGCACG 61.577 55.000 0.00 0.00 0.00 5.34
320 321 2.125552 CGCCTCCTTGATGCACGA 60.126 61.111 0.00 0.00 0.00 4.35
321 322 2.169789 CGCCTCCTTGATGCACGAG 61.170 63.158 0.00 0.00 0.00 4.18
361 362 3.257624 TCGTAGACTTTTCTGGGAAGACC 59.742 47.826 0.00 0.00 40.81 3.85
383 384 4.335647 ACCACTTGCAGGCCTCCG 62.336 66.667 0.00 0.00 0.00 4.63
390 391 0.906066 TTGCAGGCCTCCGTACATTA 59.094 50.000 0.00 0.00 0.00 1.90
404 409 2.362169 ACATTAAATGCACCAACCGC 57.638 45.000 0.00 0.00 0.00 5.68
470 478 2.879462 GGCCGCACGTTACGAGAG 60.879 66.667 13.03 5.21 0.00 3.20
481 489 2.457970 GTTACGAGAGTTCCATACGCC 58.542 52.381 0.00 0.00 46.40 5.68
521 529 2.004017 TGGTTGGATTTCGTATGCGTC 58.996 47.619 2.37 0.00 39.49 5.19
606 1693 0.909610 CCTCTGCTCCCTGGTAACCA 60.910 60.000 0.00 0.00 0.00 3.67
663 1750 1.228245 AAACGCTGGCACTGTGGAT 60.228 52.632 10.21 0.00 42.13 3.41
739 2843 2.656007 GCGACGACGTGGACACAA 60.656 61.111 14.57 0.00 41.98 3.33
743 2847 1.897398 GACGACGTGGACACAATGCC 61.897 60.000 4.58 0.00 0.00 4.40
751 2888 1.408340 TGGACACAATGCCAACAACAG 59.592 47.619 0.00 0.00 0.00 3.16
782 2921 1.806351 CCGTTGCGCCGTACACATA 60.806 57.895 4.18 0.00 0.00 2.29
783 2922 1.342473 CGTTGCGCCGTACACATAC 59.658 57.895 4.18 0.00 0.00 2.39
784 2923 1.345660 CGTTGCGCCGTACACATACA 61.346 55.000 4.18 0.00 0.00 2.29
785 2924 1.003851 GTTGCGCCGTACACATACAT 58.996 50.000 4.18 0.00 0.00 2.29
806 2945 2.875933 TGTTCACCTCCACGAACAAATC 59.124 45.455 2.65 0.00 46.29 2.17
811 2984 2.084546 CCTCCACGAACAAATCCCTTC 58.915 52.381 0.00 0.00 0.00 3.46
845 3019 3.849951 CCCATCACCTCCGACGGG 61.850 72.222 15.25 4.64 0.00 5.28
846 3020 4.530857 CCATCACCTCCGACGGGC 62.531 72.222 15.25 0.00 0.00 6.13
847 3021 4.530857 CATCACCTCCGACGGGCC 62.531 72.222 15.25 0.00 0.00 5.80
1449 3655 2.152699 CGACAGCGACATCGTCACC 61.153 63.158 2.85 0.00 42.22 4.02
1605 3811 4.011517 GACGCCGAGGGGGACAAA 62.012 66.667 10.95 0.00 39.07 2.83
1689 3895 4.430765 GCCTTCTCGTCGCGGGAA 62.431 66.667 6.13 12.69 44.41 3.97
1975 4181 1.995991 CACGAATTCTACCACGCCG 59.004 57.895 3.52 0.00 0.00 6.46
2061 4267 1.384989 GGCTCGAGAAGACGATCCCA 61.385 60.000 18.75 0.00 40.99 4.37
2133 4339 1.746615 CGGGTGCCTGGTCATTGAG 60.747 63.158 0.00 0.00 0.00 3.02
2331 4537 2.146342 CCAACTGTTTGAGTCGCATCT 58.854 47.619 0.00 0.00 34.24 2.90
2342 4548 4.433615 TGAGTCGCATCTCCAAATACTTC 58.566 43.478 3.26 0.00 33.93 3.01
2343 4549 4.081697 TGAGTCGCATCTCCAAATACTTCA 60.082 41.667 3.26 0.00 33.93 3.02
2357 4572 1.168714 ACTTCAGGAAATTCCGCAGC 58.831 50.000 6.35 0.00 42.75 5.25
2358 4573 1.167851 CTTCAGGAAATTCCGCAGCA 58.832 50.000 6.35 0.00 42.75 4.41
2359 4574 1.747355 CTTCAGGAAATTCCGCAGCAT 59.253 47.619 6.35 0.00 42.75 3.79
2360 4575 1.382522 TCAGGAAATTCCGCAGCATC 58.617 50.000 6.35 0.00 42.75 3.91
2361 4576 1.065199 TCAGGAAATTCCGCAGCATCT 60.065 47.619 6.35 0.00 42.75 2.90
2365 4580 2.523015 GAAATTCCGCAGCATCTTGTG 58.477 47.619 0.00 0.00 0.00 3.33
2366 4581 1.538047 AATTCCGCAGCATCTTGTGT 58.462 45.000 0.00 0.00 0.00 3.72
2367 4582 0.806868 ATTCCGCAGCATCTTGTGTG 59.193 50.000 0.00 0.00 0.00 3.82
2368 4583 0.534877 TTCCGCAGCATCTTGTGTGT 60.535 50.000 0.00 0.00 0.00 3.72
2369 4584 0.320050 TCCGCAGCATCTTGTGTGTA 59.680 50.000 0.00 0.00 0.00 2.90
2370 4585 1.155889 CCGCAGCATCTTGTGTGTAA 58.844 50.000 0.00 0.00 0.00 2.41
2371 4586 1.129251 CCGCAGCATCTTGTGTGTAAG 59.871 52.381 0.00 0.00 0.00 2.34
2372 4587 1.464687 CGCAGCATCTTGTGTGTAAGC 60.465 52.381 0.00 0.00 0.00 3.09
2373 4588 1.135575 GCAGCATCTTGTGTGTAAGCC 60.136 52.381 0.00 0.00 0.00 4.35
2374 4589 2.430465 CAGCATCTTGTGTGTAAGCCT 58.570 47.619 0.00 0.00 0.00 4.58
2375 4590 2.417933 CAGCATCTTGTGTGTAAGCCTC 59.582 50.000 0.00 0.00 0.00 4.70
2376 4591 1.394917 GCATCTTGTGTGTAAGCCTCG 59.605 52.381 0.00 0.00 0.00 4.63
2377 4592 2.930887 GCATCTTGTGTGTAAGCCTCGA 60.931 50.000 0.00 0.00 0.00 4.04
2378 4593 3.325870 CATCTTGTGTGTAAGCCTCGAA 58.674 45.455 0.00 0.00 0.00 3.71
2379 4594 3.026630 TCTTGTGTGTAAGCCTCGAAG 57.973 47.619 0.00 0.00 0.00 3.79
2380 4595 2.069273 CTTGTGTGTAAGCCTCGAAGG 58.931 52.381 0.00 0.00 38.80 3.46
2381 4596 1.045407 TGTGTGTAAGCCTCGAAGGT 58.955 50.000 3.38 0.00 37.80 3.50
2382 4597 2.241160 TGTGTGTAAGCCTCGAAGGTA 58.759 47.619 3.38 0.00 37.80 3.08
2383 4598 2.230508 TGTGTGTAAGCCTCGAAGGTAG 59.769 50.000 3.38 0.00 37.80 3.18
2400 4615 1.114119 TAGTGTACCGGTGTGGCACA 61.114 55.000 19.93 17.96 41.93 4.57
2401 4616 1.302192 GTGTACCGGTGTGGCACAT 60.302 57.895 24.95 10.30 45.77 3.21
2419 4724 1.942657 CATGAATGTAACTGGAGGCGG 59.057 52.381 0.00 0.00 0.00 6.13
2420 4725 0.251916 TGAATGTAACTGGAGGCGGG 59.748 55.000 0.00 0.00 0.00 6.13
2429 4734 3.365265 GGAGGCGGGCAGTTTGTG 61.365 66.667 3.78 0.00 0.00 3.33
2438 4743 1.480545 GGGCAGTTTGTGTTGGTCTTT 59.519 47.619 0.00 0.00 0.00 2.52
2446 4753 6.636850 CAGTTTGTGTTGGTCTTTGTATAAGC 59.363 38.462 0.00 0.00 0.00 3.09
2449 4756 6.892658 TGTGTTGGTCTTTGTATAAGCATT 57.107 33.333 0.00 0.00 0.00 3.56
2455 4762 7.759489 TGGTCTTTGTATAAGCATTTTCAGT 57.241 32.000 0.00 0.00 0.00 3.41
2475 4782 5.245301 TCAGTAATACAGTTACAGTGCAGGT 59.755 40.000 0.00 0.00 0.00 4.00
2524 4831 9.649167 AAACAAGTGTACAGTATATAACAGGTC 57.351 33.333 3.00 0.00 0.00 3.85
2525 4832 8.357290 ACAAGTGTACAGTATATAACAGGTCA 57.643 34.615 3.00 0.00 0.00 4.02
2526 4833 8.978472 ACAAGTGTACAGTATATAACAGGTCAT 58.022 33.333 3.00 0.00 0.00 3.06
2527 4834 9.817809 CAAGTGTACAGTATATAACAGGTCATT 57.182 33.333 3.00 0.00 0.00 2.57
2528 4835 9.817809 AAGTGTACAGTATATAACAGGTCATTG 57.182 33.333 3.00 0.00 0.00 2.82
2532 4839 6.658849 ACAGTATATAACAGGTCATTGGCAA 58.341 36.000 0.68 0.68 0.00 4.52
2534 4841 6.017109 CAGTATATAACAGGTCATTGGCAACC 60.017 42.308 0.00 0.00 35.69 3.77
2538 5603 0.827089 CAGGTCATTGGCAACCACCA 60.827 55.000 24.29 0.00 38.06 4.17
2545 5610 0.465460 TTGGCAACCACCAGAGACAC 60.465 55.000 0.00 0.00 41.82 3.67
2658 5723 9.388506 CAGTATATCAGGTTCAGAGTTTTCATT 57.611 33.333 0.00 0.00 0.00 2.57
2659 5724 9.965902 AGTATATCAGGTTCAGAGTTTTCATTT 57.034 29.630 0.00 0.00 0.00 2.32
2702 5767 6.429692 CAGCACATAAATCCCCATACGATAAA 59.570 38.462 0.00 0.00 0.00 1.40
2764 5832 4.348020 TCTTATGTTCTACCCTGTCCCT 57.652 45.455 0.00 0.00 0.00 4.20
2828 5898 9.713713 ACAAACAAACACCAGTAAACTTTATTT 57.286 25.926 0.00 0.00 0.00 1.40
2937 6038 3.189287 TCTTTGCCTTCTTGAAAGATCGC 59.811 43.478 0.00 0.01 34.49 4.58
3014 6115 6.183810 TGGAAATGATCTAGCATCATGAGT 57.816 37.500 14.51 6.98 38.62 3.41
3015 6116 6.598503 TGGAAATGATCTAGCATCATGAGTT 58.401 36.000 14.51 8.37 38.62 3.01
3021 6122 6.881570 TGATCTAGCATCATGAGTTCTTTGA 58.118 36.000 0.09 1.59 0.00 2.69
3090 6191 0.984230 TCTCCACGAAAATCCCAGCT 59.016 50.000 0.00 0.00 0.00 4.24
3291 6392 0.400213 AGTTCGCCACCCAAATCTCA 59.600 50.000 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.190953 GTCCTATAGACCGACACTATGCC 59.809 52.174 0.00 0.00 39.84 4.40
1 2 4.422546 GTCCTATAGACCGACACTATGC 57.577 50.000 0.00 0.00 39.84 3.14
12 13 4.023878 CGGCAACAGTAGAGTCCTATAGAC 60.024 50.000 0.00 0.00 46.71 2.59
13 14 4.135306 CGGCAACAGTAGAGTCCTATAGA 58.865 47.826 0.00 0.00 0.00 1.98
14 15 3.884091 ACGGCAACAGTAGAGTCCTATAG 59.116 47.826 0.00 0.00 0.00 1.31
15 16 3.894759 ACGGCAACAGTAGAGTCCTATA 58.105 45.455 0.00 0.00 0.00 1.31
16 17 2.736347 ACGGCAACAGTAGAGTCCTAT 58.264 47.619 0.00 0.00 0.00 2.57
17 18 2.211250 ACGGCAACAGTAGAGTCCTA 57.789 50.000 0.00 0.00 0.00 2.94
18 19 1.339097 AACGGCAACAGTAGAGTCCT 58.661 50.000 0.00 0.00 0.00 3.85
19 20 2.165319 AAACGGCAACAGTAGAGTCC 57.835 50.000 0.00 0.00 0.00 3.85
20 21 2.870411 ACAAAACGGCAACAGTAGAGTC 59.130 45.455 0.00 0.00 0.00 3.36
21 22 2.870411 GACAAAACGGCAACAGTAGAGT 59.130 45.455 0.00 0.00 0.00 3.24
22 23 2.096909 CGACAAAACGGCAACAGTAGAG 60.097 50.000 0.00 0.00 0.00 2.43
23 24 1.862201 CGACAAAACGGCAACAGTAGA 59.138 47.619 0.00 0.00 0.00 2.59
24 25 1.070175 CCGACAAAACGGCAACAGTAG 60.070 52.381 0.00 0.00 46.20 2.57
25 26 0.938713 CCGACAAAACGGCAACAGTA 59.061 50.000 0.00 0.00 46.20 2.74
26 27 1.725066 CCGACAAAACGGCAACAGT 59.275 52.632 0.00 0.00 46.20 3.55
27 28 4.607024 CCGACAAAACGGCAACAG 57.393 55.556 0.00 0.00 46.20 3.16
34 35 6.199342 ACCATCAAATAAAAACCGACAAAACG 59.801 34.615 0.00 0.00 0.00 3.60
35 36 7.471657 ACCATCAAATAAAAACCGACAAAAC 57.528 32.000 0.00 0.00 0.00 2.43
36 37 8.494016 AAACCATCAAATAAAAACCGACAAAA 57.506 26.923 0.00 0.00 0.00 2.44
37 38 8.494016 AAAACCATCAAATAAAAACCGACAAA 57.506 26.923 0.00 0.00 0.00 2.83
38 39 8.494016 AAAAACCATCAAATAAAAACCGACAA 57.506 26.923 0.00 0.00 0.00 3.18
61 62 5.239744 TCAAATCCGAAAGTCCGATCAAAAA 59.760 36.000 0.00 0.00 0.00 1.94
62 63 4.757657 TCAAATCCGAAAGTCCGATCAAAA 59.242 37.500 0.00 0.00 0.00 2.44
63 64 4.153475 GTCAAATCCGAAAGTCCGATCAAA 59.847 41.667 0.00 0.00 0.00 2.69
64 65 3.682858 GTCAAATCCGAAAGTCCGATCAA 59.317 43.478 0.00 0.00 0.00 2.57
65 66 3.056107 AGTCAAATCCGAAAGTCCGATCA 60.056 43.478 0.00 0.00 0.00 2.92
66 67 3.307242 CAGTCAAATCCGAAAGTCCGATC 59.693 47.826 0.00 0.00 0.00 3.69
67 68 3.262420 CAGTCAAATCCGAAAGTCCGAT 58.738 45.455 0.00 0.00 0.00 4.18
68 69 2.036733 ACAGTCAAATCCGAAAGTCCGA 59.963 45.455 0.00 0.00 0.00 4.55
69 70 2.157668 CACAGTCAAATCCGAAAGTCCG 59.842 50.000 0.00 0.00 0.00 4.79
70 71 3.058914 CACACAGTCAAATCCGAAAGTCC 60.059 47.826 0.00 0.00 0.00 3.85
71 72 3.607078 GCACACAGTCAAATCCGAAAGTC 60.607 47.826 0.00 0.00 0.00 3.01
72 73 2.290641 GCACACAGTCAAATCCGAAAGT 59.709 45.455 0.00 0.00 0.00 2.66
73 74 2.290367 TGCACACAGTCAAATCCGAAAG 59.710 45.455 0.00 0.00 0.00 2.62
74 75 2.293170 TGCACACAGTCAAATCCGAAA 58.707 42.857 0.00 0.00 0.00 3.46
75 76 1.960417 TGCACACAGTCAAATCCGAA 58.040 45.000 0.00 0.00 0.00 4.30
76 77 2.076100 GATGCACACAGTCAAATCCGA 58.924 47.619 0.00 0.00 0.00 4.55
77 78 2.079158 AGATGCACACAGTCAAATCCG 58.921 47.619 0.00 0.00 0.00 4.18
78 79 4.697352 ACTAAGATGCACACAGTCAAATCC 59.303 41.667 0.00 0.00 0.00 3.01
79 80 5.869753 ACTAAGATGCACACAGTCAAATC 57.130 39.130 0.00 0.00 0.00 2.17
80 81 7.755591 CATAACTAAGATGCACACAGTCAAAT 58.244 34.615 0.00 0.00 0.00 2.32
81 82 7.132694 CATAACTAAGATGCACACAGTCAAA 57.867 36.000 0.00 0.00 0.00 2.69
82 83 6.726258 CATAACTAAGATGCACACAGTCAA 57.274 37.500 0.00 0.00 0.00 3.18
93 94 3.062763 CGGCCTCTGCATAACTAAGATG 58.937 50.000 0.00 0.00 40.13 2.90
94 95 2.037772 CCGGCCTCTGCATAACTAAGAT 59.962 50.000 0.00 0.00 40.13 2.40
95 96 1.412710 CCGGCCTCTGCATAACTAAGA 59.587 52.381 0.00 0.00 40.13 2.10
96 97 1.541233 CCCGGCCTCTGCATAACTAAG 60.541 57.143 0.00 0.00 40.13 2.18
97 98 0.468226 CCCGGCCTCTGCATAACTAA 59.532 55.000 0.00 0.00 40.13 2.24
98 99 0.689745 ACCCGGCCTCTGCATAACTA 60.690 55.000 0.00 0.00 40.13 2.24
99 100 1.995626 ACCCGGCCTCTGCATAACT 60.996 57.895 0.00 0.00 40.13 2.24
100 101 1.819632 CACCCGGCCTCTGCATAAC 60.820 63.158 0.00 0.00 40.13 1.89
101 102 1.847798 AACACCCGGCCTCTGCATAA 61.848 55.000 0.00 0.00 40.13 1.90
102 103 0.978667 TAACACCCGGCCTCTGCATA 60.979 55.000 0.00 0.00 40.13 3.14
103 104 2.297895 TAACACCCGGCCTCTGCAT 61.298 57.895 0.00 0.00 40.13 3.96
104 105 2.925706 TAACACCCGGCCTCTGCA 60.926 61.111 0.00 0.00 40.13 4.41
105 106 2.436115 GTAACACCCGGCCTCTGC 60.436 66.667 0.00 0.00 0.00 4.26
106 107 1.218316 GAGTAACACCCGGCCTCTG 59.782 63.158 0.00 0.00 0.00 3.35
107 108 0.617820 ATGAGTAACACCCGGCCTCT 60.618 55.000 0.00 0.00 0.00 3.69
108 109 1.117150 TATGAGTAACACCCGGCCTC 58.883 55.000 0.00 0.00 0.00 4.70
109 110 1.575419 TTATGAGTAACACCCGGCCT 58.425 50.000 0.00 0.00 0.00 5.19
110 111 2.218603 CATTATGAGTAACACCCGGCC 58.781 52.381 0.00 0.00 0.00 6.13
111 112 1.602377 GCATTATGAGTAACACCCGGC 59.398 52.381 0.00 0.00 0.00 6.13
112 113 3.194005 AGCATTATGAGTAACACCCGG 57.806 47.619 0.00 0.00 0.00 5.73
113 114 6.861065 ATAAAGCATTATGAGTAACACCCG 57.139 37.500 0.00 0.00 30.49 5.28
114 115 7.284489 TGGAATAAAGCATTATGAGTAACACCC 59.716 37.037 0.00 0.00 32.06 4.61
115 116 8.129211 GTGGAATAAAGCATTATGAGTAACACC 58.871 37.037 0.00 0.00 32.06 4.16
116 117 8.893727 AGTGGAATAAAGCATTATGAGTAACAC 58.106 33.333 0.00 0.00 32.06 3.32
117 118 9.461312 AAGTGGAATAAAGCATTATGAGTAACA 57.539 29.630 0.00 0.00 32.06 2.41
118 119 9.722056 CAAGTGGAATAAAGCATTATGAGTAAC 57.278 33.333 0.00 0.00 32.06 2.50
119 120 9.679661 TCAAGTGGAATAAAGCATTATGAGTAA 57.320 29.630 0.00 0.00 32.06 2.24
120 121 9.851686 ATCAAGTGGAATAAAGCATTATGAGTA 57.148 29.630 0.00 0.00 32.06 2.59
121 122 8.757982 ATCAAGTGGAATAAAGCATTATGAGT 57.242 30.769 0.00 0.00 32.06 3.41
123 124 9.851686 AGTATCAAGTGGAATAAAGCATTATGA 57.148 29.630 0.00 0.00 32.06 2.15
127 128 9.632638 ATGTAGTATCAAGTGGAATAAAGCATT 57.367 29.630 0.00 0.00 0.00 3.56
128 129 9.632638 AATGTAGTATCAAGTGGAATAAAGCAT 57.367 29.630 0.00 0.00 0.00 3.79
129 130 9.461312 AAATGTAGTATCAAGTGGAATAAAGCA 57.539 29.630 0.00 0.00 0.00 3.91
166 167 9.542462 TCAGATATTTTCGATAAAGGACGATTT 57.458 29.630 0.00 0.00 38.30 2.17
167 168 9.542462 TTCAGATATTTTCGATAAAGGACGATT 57.458 29.630 0.00 0.00 38.30 3.34
168 169 9.197694 CTTCAGATATTTTCGATAAAGGACGAT 57.802 33.333 0.00 0.00 38.30 3.73
169 170 7.169308 GCTTCAGATATTTTCGATAAAGGACGA 59.831 37.037 0.00 0.00 36.75 4.20
170 171 7.169982 AGCTTCAGATATTTTCGATAAAGGACG 59.830 37.037 0.00 0.00 0.00 4.79
171 172 8.371770 AGCTTCAGATATTTTCGATAAAGGAC 57.628 34.615 0.00 0.00 0.00 3.85
177 178 9.208022 CCAACATAGCTTCAGATATTTTCGATA 57.792 33.333 0.00 0.00 0.00 2.92
178 179 7.933577 TCCAACATAGCTTCAGATATTTTCGAT 59.066 33.333 0.00 0.00 0.00 3.59
179 180 7.224753 GTCCAACATAGCTTCAGATATTTTCGA 59.775 37.037 0.00 0.00 0.00 3.71
180 181 7.348201 GTCCAACATAGCTTCAGATATTTTCG 58.652 38.462 0.00 0.00 0.00 3.46
181 182 7.224753 TCGTCCAACATAGCTTCAGATATTTTC 59.775 37.037 0.00 0.00 0.00 2.29
182 183 7.047891 TCGTCCAACATAGCTTCAGATATTTT 58.952 34.615 0.00 0.00 0.00 1.82
183 184 6.582636 TCGTCCAACATAGCTTCAGATATTT 58.417 36.000 0.00 0.00 0.00 1.40
184 185 6.161855 TCGTCCAACATAGCTTCAGATATT 57.838 37.500 0.00 0.00 0.00 1.28
185 186 5.791336 TCGTCCAACATAGCTTCAGATAT 57.209 39.130 0.00 0.00 0.00 1.63
186 187 5.791336 ATCGTCCAACATAGCTTCAGATA 57.209 39.130 0.00 0.00 0.00 1.98
187 188 4.679373 ATCGTCCAACATAGCTTCAGAT 57.321 40.909 0.00 0.00 0.00 2.90
188 189 4.471904 AATCGTCCAACATAGCTTCAGA 57.528 40.909 0.00 0.00 0.00 3.27
189 190 5.551760 AAAATCGTCCAACATAGCTTCAG 57.448 39.130 0.00 0.00 0.00 3.02
190 191 5.957842 AAAAATCGTCCAACATAGCTTCA 57.042 34.783 0.00 0.00 0.00 3.02
191 192 7.693952 TGATAAAAATCGTCCAACATAGCTTC 58.306 34.615 0.00 0.00 0.00 3.86
192 193 7.624360 TGATAAAAATCGTCCAACATAGCTT 57.376 32.000 0.00 0.00 0.00 3.74
193 194 7.624360 TTGATAAAAATCGTCCAACATAGCT 57.376 32.000 0.00 0.00 0.00 3.32
194 195 8.856490 ATTTGATAAAAATCGTCCAACATAGC 57.144 30.769 0.00 0.00 0.00 2.97
197 198 8.522830 ACAGATTTGATAAAAATCGTCCAACAT 58.477 29.630 5.43 0.00 40.56 2.71
198 199 7.881142 ACAGATTTGATAAAAATCGTCCAACA 58.119 30.769 5.43 0.00 40.56 3.33
199 200 8.237267 AGACAGATTTGATAAAAATCGTCCAAC 58.763 33.333 19.80 7.82 40.56 3.77
200 201 8.335532 AGACAGATTTGATAAAAATCGTCCAA 57.664 30.769 19.80 0.00 40.56 3.53
201 202 7.921786 AGACAGATTTGATAAAAATCGTCCA 57.078 32.000 19.80 0.00 40.56 4.02
224 225 9.124807 CGCTACTGGTTAAAGGAAATTTTAAAG 57.875 33.333 0.00 0.00 35.10 1.85
225 226 8.631797 ACGCTACTGGTTAAAGGAAATTTTAAA 58.368 29.630 0.00 0.00 35.10 1.52
226 227 8.168790 ACGCTACTGGTTAAAGGAAATTTTAA 57.831 30.769 0.00 0.00 31.86 1.52
227 228 7.444792 TGACGCTACTGGTTAAAGGAAATTTTA 59.555 33.333 0.00 0.00 32.01 1.52
228 229 6.263617 TGACGCTACTGGTTAAAGGAAATTTT 59.736 34.615 0.00 0.00 32.01 1.82
229 230 5.766174 TGACGCTACTGGTTAAAGGAAATTT 59.234 36.000 0.00 0.00 34.72 1.82
230 231 5.180680 GTGACGCTACTGGTTAAAGGAAATT 59.819 40.000 0.00 0.00 0.00 1.82
231 232 4.694037 GTGACGCTACTGGTTAAAGGAAAT 59.306 41.667 0.00 0.00 0.00 2.17
232 233 4.060205 GTGACGCTACTGGTTAAAGGAAA 58.940 43.478 0.00 0.00 0.00 3.13
233 234 3.555586 GGTGACGCTACTGGTTAAAGGAA 60.556 47.826 0.00 0.00 0.00 3.36
234 235 2.028748 GGTGACGCTACTGGTTAAAGGA 60.029 50.000 0.00 0.00 0.00 3.36
235 236 2.028385 AGGTGACGCTACTGGTTAAAGG 60.028 50.000 0.00 0.00 0.00 3.11
236 237 3.251571 GAGGTGACGCTACTGGTTAAAG 58.748 50.000 0.00 0.00 0.00 1.85
237 238 2.028748 GGAGGTGACGCTACTGGTTAAA 60.029 50.000 0.00 0.00 0.00 1.52
238 239 1.547372 GGAGGTGACGCTACTGGTTAA 59.453 52.381 0.00 0.00 0.00 2.01
239 240 1.180029 GGAGGTGACGCTACTGGTTA 58.820 55.000 0.00 0.00 0.00 2.85
240 241 0.542232 AGGAGGTGACGCTACTGGTT 60.542 55.000 0.00 0.00 0.00 3.67
241 242 0.542232 AAGGAGGTGACGCTACTGGT 60.542 55.000 0.00 0.00 0.00 4.00
242 243 0.108615 CAAGGAGGTGACGCTACTGG 60.109 60.000 0.00 0.00 0.00 4.00
243 244 0.603569 ACAAGGAGGTGACGCTACTG 59.396 55.000 0.00 0.00 0.00 2.74
244 245 1.339097 AACAAGGAGGTGACGCTACT 58.661 50.000 0.00 0.00 0.00 2.57
245 246 2.067013 GAAACAAGGAGGTGACGCTAC 58.933 52.381 0.00 0.00 0.00 3.58
246 247 1.689813 TGAAACAAGGAGGTGACGCTA 59.310 47.619 0.00 0.00 0.00 4.26
247 248 0.468226 TGAAACAAGGAGGTGACGCT 59.532 50.000 0.00 0.00 0.00 5.07
248 249 1.197721 CATGAAACAAGGAGGTGACGC 59.802 52.381 0.00 0.00 0.00 5.19
249 250 1.197721 GCATGAAACAAGGAGGTGACG 59.802 52.381 0.00 0.00 0.00 4.35
250 251 1.197721 CGCATGAAACAAGGAGGTGAC 59.802 52.381 0.00 0.00 0.00 3.67
251 252 1.071542 TCGCATGAAACAAGGAGGTGA 59.928 47.619 0.00 0.00 0.00 4.02
252 253 1.197721 GTCGCATGAAACAAGGAGGTG 59.802 52.381 0.00 0.00 0.00 4.00
253 254 1.072331 AGTCGCATGAAACAAGGAGGT 59.928 47.619 0.00 0.00 0.00 3.85
254 255 1.813513 AGTCGCATGAAACAAGGAGG 58.186 50.000 0.00 0.00 0.00 4.30
255 256 3.665323 CGAAAGTCGCATGAAACAAGGAG 60.665 47.826 0.00 0.00 31.14 3.69
256 257 2.223144 CGAAAGTCGCATGAAACAAGGA 59.777 45.455 0.00 0.00 31.14 3.36
257 258 2.032030 ACGAAAGTCGCATGAAACAAGG 60.032 45.455 0.00 0.00 45.12 3.61
258 259 3.253371 ACGAAAGTCGCATGAAACAAG 57.747 42.857 0.00 0.00 45.12 3.16
272 273 3.791353 GCCAAAAACTCAGAACACGAAAG 59.209 43.478 0.00 0.00 0.00 2.62
273 274 3.428316 GGCCAAAAACTCAGAACACGAAA 60.428 43.478 0.00 0.00 0.00 3.46
274 275 2.098443 GGCCAAAAACTCAGAACACGAA 59.902 45.455 0.00 0.00 0.00 3.85
275 276 1.673920 GGCCAAAAACTCAGAACACGA 59.326 47.619 0.00 0.00 0.00 4.35
276 277 1.676006 AGGCCAAAAACTCAGAACACG 59.324 47.619 5.01 0.00 0.00 4.49
277 278 4.518970 TGATAGGCCAAAAACTCAGAACAC 59.481 41.667 5.01 0.00 0.00 3.32
278 279 4.724399 TGATAGGCCAAAAACTCAGAACA 58.276 39.130 5.01 0.00 0.00 3.18
279 280 5.705609 TTGATAGGCCAAAAACTCAGAAC 57.294 39.130 5.01 0.00 0.00 3.01
280 281 5.278266 CGTTTGATAGGCCAAAAACTCAGAA 60.278 40.000 5.01 0.00 37.72 3.02
281 282 4.215399 CGTTTGATAGGCCAAAAACTCAGA 59.785 41.667 5.01 0.00 37.72 3.27
282 283 4.475944 CGTTTGATAGGCCAAAAACTCAG 58.524 43.478 5.01 0.00 37.72 3.35
283 284 3.305064 GCGTTTGATAGGCCAAAAACTCA 60.305 43.478 5.01 0.00 37.72 3.41
284 285 3.242518 GCGTTTGATAGGCCAAAAACTC 58.757 45.455 5.01 1.22 37.72 3.01
285 286 3.297830 GCGTTTGATAGGCCAAAAACT 57.702 42.857 5.01 0.00 37.72 2.66
293 294 1.017387 CAAGGAGGCGTTTGATAGGC 58.983 55.000 0.00 0.00 36.92 3.93
294 295 2.691409 TCAAGGAGGCGTTTGATAGG 57.309 50.000 0.00 0.00 0.00 2.57
295 296 2.289002 GCATCAAGGAGGCGTTTGATAG 59.711 50.000 11.79 8.89 40.93 2.08
296 297 2.288666 GCATCAAGGAGGCGTTTGATA 58.711 47.619 11.79 0.00 40.93 2.15
297 298 1.098050 GCATCAAGGAGGCGTTTGAT 58.902 50.000 7.89 7.89 42.98 2.57
298 299 0.250684 TGCATCAAGGAGGCGTTTGA 60.251 50.000 0.00 4.35 42.60 2.69
299 300 0.109597 GTGCATCAAGGAGGCGTTTG 60.110 55.000 0.00 0.00 42.60 2.93
300 301 1.577328 CGTGCATCAAGGAGGCGTTT 61.577 55.000 0.00 0.00 42.60 3.60
301 302 2.034879 CGTGCATCAAGGAGGCGTT 61.035 57.895 0.00 0.00 42.60 4.84
302 303 2.434884 CGTGCATCAAGGAGGCGT 60.435 61.111 0.00 0.00 42.60 5.68
303 304 2.125552 TCGTGCATCAAGGAGGCG 60.126 61.111 0.00 0.00 42.60 5.52
304 305 1.817099 CCTCGTGCATCAAGGAGGC 60.817 63.158 6.20 0.00 39.60 4.70
305 306 4.528674 CCTCGTGCATCAAGGAGG 57.471 61.111 6.20 6.31 40.05 4.30
306 307 3.805267 GCCTCGTGCATCAAGGAG 58.195 61.111 14.24 5.69 40.77 3.69
315 316 0.390340 TCAGAGACAATGCCTCGTGC 60.390 55.000 0.00 0.00 41.77 5.34
316 317 2.306341 ATCAGAGACAATGCCTCGTG 57.694 50.000 0.00 0.00 35.88 4.35
317 318 2.419297 GGAATCAGAGACAATGCCTCGT 60.419 50.000 0.00 0.00 35.88 4.18
318 319 2.158986 AGGAATCAGAGACAATGCCTCG 60.159 50.000 0.00 0.00 35.88 4.63
319 320 3.465871 GAGGAATCAGAGACAATGCCTC 58.534 50.000 0.00 0.00 34.55 4.70
320 321 2.158986 CGAGGAATCAGAGACAATGCCT 60.159 50.000 0.00 0.00 0.00 4.75
321 322 2.208431 CGAGGAATCAGAGACAATGCC 58.792 52.381 0.00 0.00 0.00 4.40
361 362 2.328099 GGCCTGCAAGTGGTCGAAG 61.328 63.158 0.00 0.00 0.00 3.79
383 384 3.119637 AGCGGTTGGTGCATTTAATGTAC 60.120 43.478 15.98 15.98 43.89 2.90
390 391 2.423538 GAGATAAGCGGTTGGTGCATTT 59.576 45.455 10.73 0.00 33.85 2.32
404 409 4.457834 AACGAGGGTGAACAGAGATAAG 57.542 45.455 0.00 0.00 0.00 1.73
465 473 0.174845 TTGGGCGTATGGAACTCTCG 59.825 55.000 0.00 0.00 0.00 4.04
470 478 0.035820 TGGAGTTGGGCGTATGGAAC 60.036 55.000 0.00 0.00 0.00 3.62
471 479 0.035820 GTGGAGTTGGGCGTATGGAA 60.036 55.000 0.00 0.00 0.00 3.53
481 489 1.785041 CTTGCGTGGTGTGGAGTTGG 61.785 60.000 0.00 0.00 0.00 3.77
521 529 2.110352 GCCCACCGATTTGTACCCG 61.110 63.158 0.00 0.00 0.00 5.28
606 1693 5.181245 CCAAAACGGTGATAGTTTCTGATGT 59.819 40.000 0.00 0.00 40.49 3.06
651 1738 1.228215 CACACCATCCACAGTGCCA 60.228 57.895 0.00 0.00 37.51 4.92
663 1750 0.973632 ATAAGGAGCGTGACACACCA 59.026 50.000 6.37 0.00 0.00 4.17
710 2814 2.509336 CGTCGCCGGCTTCTTCAT 60.509 61.111 26.68 0.00 0.00 2.57
739 2843 2.024080 ACATATCCCCTGTTGTTGGCAT 60.024 45.455 0.00 0.00 0.00 4.40
743 2847 1.750778 GCCACATATCCCCTGTTGTTG 59.249 52.381 0.00 0.00 0.00 3.33
751 2888 1.528309 CAACGGGCCACATATCCCC 60.528 63.158 4.39 0.00 39.39 4.81
782 2921 1.140052 TGTTCGTGGAGGTGAACATGT 59.860 47.619 3.84 0.00 46.86 3.21
783 2922 1.877637 TGTTCGTGGAGGTGAACATG 58.122 50.000 3.84 0.00 46.86 3.21
806 2945 1.271543 TGACAGGCAATCACAGAAGGG 60.272 52.381 0.00 0.00 0.00 3.95
811 2984 1.310933 GGGCTGACAGGCAATCACAG 61.311 60.000 28.11 0.00 43.44 3.66
864 3038 3.205851 AAAGAGGTTCCGTGGGCCC 62.206 63.158 17.59 17.59 0.00 5.80
865 3039 1.971695 CAAAGAGGTTCCGTGGGCC 60.972 63.158 0.00 0.00 0.00 5.80
1471 3677 4.424566 GACGTAGCGGCGGGACAA 62.425 66.667 9.78 0.00 35.98 3.18
1601 3807 1.545706 GGGCTCCTCCTCGTCTTTGT 61.546 60.000 0.00 0.00 34.39 2.83
1605 3811 2.277404 GAGGGCTCCTCCTCGTCT 59.723 66.667 9.46 0.00 44.36 4.18
2122 4328 2.566833 TGGTTGACCTCAATGACCAG 57.433 50.000 1.34 0.00 38.24 4.00
2125 4331 3.744660 AGTCTTGGTTGACCTCAATGAC 58.255 45.455 1.34 0.39 38.24 3.06
2133 4339 2.027625 CGGCGAGTCTTGGTTGACC 61.028 63.158 0.00 0.00 37.66 4.02
2331 4537 4.398044 GCGGAATTTCCTGAAGTATTTGGA 59.602 41.667 13.45 0.00 33.30 3.53
2342 4548 1.386533 AGATGCTGCGGAATTTCCTG 58.613 50.000 13.45 8.12 33.30 3.86
2343 4549 1.747355 CAAGATGCTGCGGAATTTCCT 59.253 47.619 13.45 0.00 33.30 3.36
2357 4572 2.959516 TCGAGGCTTACACACAAGATG 58.040 47.619 0.00 0.00 0.00 2.90
2358 4573 3.589988 CTTCGAGGCTTACACACAAGAT 58.410 45.455 0.00 0.00 0.00 2.40
2359 4574 2.288825 CCTTCGAGGCTTACACACAAGA 60.289 50.000 0.00 0.00 0.00 3.02
2360 4575 2.069273 CCTTCGAGGCTTACACACAAG 58.931 52.381 0.00 0.00 0.00 3.16
2361 4576 1.414919 ACCTTCGAGGCTTACACACAA 59.585 47.619 0.00 0.00 39.63 3.33
2365 4580 2.230750 ACACTACCTTCGAGGCTTACAC 59.769 50.000 0.00 0.00 39.63 2.90
2366 4581 2.522185 ACACTACCTTCGAGGCTTACA 58.478 47.619 0.00 0.00 39.63 2.41
2367 4582 3.181492 GGTACACTACCTTCGAGGCTTAC 60.181 52.174 0.00 0.00 45.52 2.34
2368 4583 3.019564 GGTACACTACCTTCGAGGCTTA 58.980 50.000 0.00 0.00 45.52 3.09
2369 4584 1.823610 GGTACACTACCTTCGAGGCTT 59.176 52.381 0.00 0.00 45.52 4.35
2370 4585 1.472188 GGTACACTACCTTCGAGGCT 58.528 55.000 0.00 0.00 45.52 4.58
2371 4586 0.100146 CGGTACACTACCTTCGAGGC 59.900 60.000 0.00 0.00 46.81 4.70
2372 4587 0.737219 CCGGTACACTACCTTCGAGG 59.263 60.000 0.00 0.03 46.81 4.63
2373 4588 1.131883 CACCGGTACACTACCTTCGAG 59.868 57.143 6.87 0.00 46.81 4.04
2374 4589 1.167851 CACCGGTACACTACCTTCGA 58.832 55.000 6.87 0.00 46.81 3.71
2375 4590 0.883833 ACACCGGTACACTACCTTCG 59.116 55.000 6.87 0.00 46.81 3.79
2376 4591 1.067354 CCACACCGGTACACTACCTTC 60.067 57.143 6.87 0.00 46.81 3.46
2377 4592 0.971386 CCACACCGGTACACTACCTT 59.029 55.000 6.87 0.00 46.81 3.50
2378 4593 1.538687 GCCACACCGGTACACTACCT 61.539 60.000 6.87 0.00 46.81 3.08
2379 4594 1.079612 GCCACACCGGTACACTACC 60.080 63.158 6.87 0.00 45.52 3.18
2380 4595 1.667151 TGCCACACCGGTACACTAC 59.333 57.895 6.87 0.00 36.97 2.73
2381 4596 4.194660 TGCCACACCGGTACACTA 57.805 55.556 6.87 0.00 36.97 2.74
2389 4604 1.447945 TACATTCATGTGCCACACCG 58.552 50.000 0.00 0.00 41.89 4.94
2400 4615 1.134098 CCCGCCTCCAGTTACATTCAT 60.134 52.381 0.00 0.00 0.00 2.57
2401 4616 0.251916 CCCGCCTCCAGTTACATTCA 59.748 55.000 0.00 0.00 0.00 2.57
2419 4724 2.094234 ACAAAGACCAACACAAACTGCC 60.094 45.455 0.00 0.00 0.00 4.85
2420 4725 3.230743 ACAAAGACCAACACAAACTGC 57.769 42.857 0.00 0.00 0.00 4.40
2429 4734 8.082242 ACTGAAAATGCTTATACAAAGACCAAC 58.918 33.333 0.00 0.00 0.00 3.77
2446 4753 8.503196 TGCACTGTAACTGTATTACTGAAAATG 58.497 33.333 7.61 1.28 0.00 2.32
2449 4756 6.649141 CCTGCACTGTAACTGTATTACTGAAA 59.351 38.462 7.61 0.00 0.00 2.69
2455 4762 5.477607 ACACCTGCACTGTAACTGTATTA 57.522 39.130 0.00 0.00 0.00 0.98
2460 4767 3.059884 CTGTACACCTGCACTGTAACTG 58.940 50.000 0.00 0.00 0.00 3.16
2461 4768 2.698797 ACTGTACACCTGCACTGTAACT 59.301 45.455 0.00 0.00 0.00 2.24
2462 4769 3.107642 ACTGTACACCTGCACTGTAAC 57.892 47.619 0.00 0.00 0.00 2.50
2463 4770 3.724374 GAACTGTACACCTGCACTGTAA 58.276 45.455 0.00 0.00 0.00 2.41
2464 4771 2.287970 CGAACTGTACACCTGCACTGTA 60.288 50.000 0.00 0.00 0.00 2.74
2465 4772 1.538204 CGAACTGTACACCTGCACTGT 60.538 52.381 0.00 0.00 0.00 3.55
2524 4831 0.883833 GTCTCTGGTGGTTGCCAATG 59.116 55.000 0.00 0.00 38.18 2.82
2525 4832 0.478072 TGTCTCTGGTGGTTGCCAAT 59.522 50.000 0.00 0.00 38.18 3.16
2526 4833 0.465460 GTGTCTCTGGTGGTTGCCAA 60.465 55.000 0.00 0.00 38.18 4.52
2527 4834 1.148273 GTGTCTCTGGTGGTTGCCA 59.852 57.895 0.00 0.00 36.97 4.92
2528 4835 1.600916 GGTGTCTCTGGTGGTTGCC 60.601 63.158 0.00 0.00 0.00 4.52
2532 4839 1.134098 CAAACTGGTGTCTCTGGTGGT 60.134 52.381 0.00 0.00 0.00 4.16
2534 4841 2.620251 TCAAACTGGTGTCTCTGGTG 57.380 50.000 0.00 0.00 0.00 4.17
2538 5603 6.306987 ACCAATAATTCAAACTGGTGTCTCT 58.693 36.000 0.00 0.00 38.95 3.10
2545 5610 5.170748 GCCAAGACCAATAATTCAAACTGG 58.829 41.667 0.00 0.00 0.00 4.00
2702 5767 7.715249 TGTCTCTGTTAGTAGCTTGTTCATTTT 59.285 33.333 0.00 0.00 0.00 1.82
2843 5939 7.726216 TGACATCGTATCCATGAATAGTTCTT 58.274 34.615 0.00 0.00 0.00 2.52
3014 6115 4.889409 ACTCCAGAACAATGCTTCAAAGAA 59.111 37.500 0.00 0.00 0.00 2.52
3015 6116 4.464008 ACTCCAGAACAATGCTTCAAAGA 58.536 39.130 0.00 0.00 0.00 2.52
3021 6122 2.508526 GTGGACTCCAGAACAATGCTT 58.491 47.619 0.00 0.00 32.34 3.91
3066 6167 1.657822 GGATTTTCGTGGAGAGCCTC 58.342 55.000 0.00 0.00 34.31 4.70
3090 6191 2.618442 TTGGCGAGTGCATCATATCA 57.382 45.000 0.00 0.00 45.35 2.15
3291 6392 2.239907 GGGATCAGCACCTAAAACCTCT 59.760 50.000 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.