Multiple sequence alignment - TraesCS6B01G188100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G188100 chr6B 100.000 7554 0 0 1 7554 216514245 216506692 0.000000e+00 13950.0
1 TraesCS6B01G188100 chr6A 94.035 4124 134 37 352 4446 162100579 162096539 0.000000e+00 6150.0
2 TraesCS6B01G188100 chr6A 96.563 902 18 4 5415 6305 162090132 162089233 0.000000e+00 1482.0
3 TraesCS6B01G188100 chr6A 93.340 961 20 7 4502 5419 162096375 162095416 0.000000e+00 1380.0
4 TraesCS6B01G188100 chr6A 86.546 721 35 22 6316 6998 162089192 162088496 0.000000e+00 737.0
5 TraesCS6B01G188100 chr6A 89.235 353 24 6 1 353 162100983 162100645 5.420000e-116 429.0
6 TraesCS6B01G188100 chr6A 92.500 280 14 3 7279 7554 162088275 162087999 1.980000e-105 394.0
7 TraesCS6B01G188100 chr6D 93.998 4082 159 36 353 4405 122748409 122744385 0.000000e+00 6102.0
8 TraesCS6B01G188100 chr6D 93.979 1146 27 7 4450 5555 122744383 122743240 0.000000e+00 1696.0
9 TraesCS6B01G188100 chr6D 97.095 895 15 2 5411 6296 122743230 122742338 0.000000e+00 1498.0
10 TraesCS6B01G188100 chr6D 80.023 856 57 34 6316 7087 122742284 122741459 5.190000e-146 529.0
11 TraesCS6B01G188100 chr6D 91.854 356 19 3 1 353 122748824 122748476 8.810000e-134 488.0
12 TraesCS6B01G188100 chr6D 93.214 280 15 2 7279 7554 122741457 122741178 7.060000e-110 409.0
13 TraesCS6B01G188100 chr6D 95.455 44 2 0 692 735 381993578 381993621 3.780000e-08 71.3
14 TraesCS6B01G188100 chr6D 92.105 38 3 0 700 737 406172494 406172457 4.000000e-03 54.7
15 TraesCS6B01G188100 chr1D 100.000 89 0 0 4401 4489 115990010 115989922 1.690000e-36 165.0
16 TraesCS6B01G188100 chr1D 92.593 108 5 2 4386 4493 286707446 286707550 1.310000e-32 152.0
17 TraesCS6B01G188100 chr2D 96.939 98 2 1 4399 4496 436111427 436111331 6.060000e-36 163.0
18 TraesCS6B01G188100 chr2D 94.286 105 3 3 4388 4492 619321106 619321005 2.820000e-34 158.0
19 TraesCS6B01G188100 chr2D 94.118 102 5 1 4391 4492 649068605 649068705 3.650000e-33 154.0
20 TraesCS6B01G188100 chr7D 89.683 126 13 0 228 353 53713275 53713150 2.180000e-35 161.0
21 TraesCS6B01G188100 chr7D 96.907 97 2 1 4395 4491 519264538 519264633 2.180000e-35 161.0
22 TraesCS6B01G188100 chr7D 88.235 51 5 1 685 735 547678693 547678742 8.190000e-05 60.2
23 TraesCS6B01G188100 chr5D 80.000 220 40 1 352 567 447136732 447136951 7.850000e-35 159.0
24 TraesCS6B01G188100 chr5D 86.441 118 16 0 189 306 13632272 13632389 6.150000e-26 130.0
25 TraesCS6B01G188100 chr4D 95.000 100 4 1 4399 4498 489440951 489441049 1.010000e-33 156.0
26 TraesCS6B01G188100 chr4A 94.175 103 4 2 4391 4493 637225091 637225191 1.010000e-33 156.0
27 TraesCS6B01G188100 chr2B 91.743 109 7 2 4381 4488 63783703 63783810 4.720000e-32 150.0
28 TraesCS6B01G188100 chr5B 84.564 149 21 2 206 353 409445281 409445134 6.110000e-31 147.0
29 TraesCS6B01G188100 chr3A 80.899 178 26 6 1 174 558865055 558864882 4.760000e-27 134.0
30 TraesCS6B01G188100 chr7A 90.816 98 6 3 219 314 57186772 57186676 2.210000e-25 128.0
31 TraesCS6B01G188100 chr7A 100.000 29 0 0 4236 4264 701270756 701270728 4.000000e-03 54.7
32 TraesCS6B01G188100 chr7A 100.000 28 0 0 706 733 684119624 684119597 1.400000e-02 52.8
33 TraesCS6B01G188100 chr2A 88.298 94 9 2 208 300 403188710 403188618 2.230000e-20 111.0
34 TraesCS6B01G188100 chr2A 87.234 94 10 2 208 300 401220966 401220874 1.040000e-18 106.0
35 TraesCS6B01G188100 chr5A 87.234 94 12 0 194 287 567928216 567928123 2.880000e-19 108.0
36 TraesCS6B01G188100 chr1A 79.310 116 15 8 528 636 327169979 327170092 1.050000e-08 73.1
37 TraesCS6B01G188100 chr3B 90.244 41 4 0 4224 4264 772285360 772285400 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G188100 chr6B 216506692 216514245 7553 True 13950 13950 100.000000 1 7554 1 chr6B.!!$R1 7553
1 TraesCS6B01G188100 chr6A 162095416 162100983 5567 True 2653 6150 92.203333 1 5419 3 chr6A.!!$R2 5418
2 TraesCS6B01G188100 chr6A 162087999 162090132 2133 True 871 1482 91.869667 5415 7554 3 chr6A.!!$R1 2139
3 TraesCS6B01G188100 chr6D 122741178 122748824 7646 True 1787 6102 91.693833 1 7554 6 chr6D.!!$R2 7553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
683 774 0.033228 CGGCTGGATGGCAAAACAAA 59.967 50.000 0.00 0.0 41.89 2.83 F
791 906 0.808060 GAGCTGCTCTTACGCCTTCC 60.808 60.000 21.93 0.0 0.00 3.46 F
1456 1588 0.812811 CCTGTCACTGGATCATGGCG 60.813 60.000 0.00 0.0 0.00 5.69 F
2293 2432 0.552848 AGGGATGTGCCGGATTCAAT 59.447 50.000 5.05 0.0 37.63 2.57 F
3876 4018 3.055385 TGGCGCTTTAGGATAACTCTTGT 60.055 43.478 7.64 0.0 0.00 3.16 F
4598 4897 2.076863 GGTGTTGGTCAGAGCACATAC 58.923 52.381 0.48 0.0 33.88 2.39 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1578 1710 2.548464 ACCAAGAGAGGCTCAGAGAT 57.452 50.000 18.26 0.0 32.06 2.75 R
2134 2273 2.778299 ACCTTCAAGATTTAGCGCACA 58.222 42.857 11.47 0.0 0.00 4.57 R
2944 3086 0.537188 ACCTCCGCAACCACTGATAG 59.463 55.000 0.00 0.0 0.00 2.08 R
4262 4406 2.949451 ATACGAGCTCAAGGACTGTG 57.051 50.000 15.40 0.0 0.00 3.66 R
5339 5657 2.316108 TGCTAGACTGTGTTGACCTCA 58.684 47.619 0.00 0.0 0.00 3.86 R
6558 7118 0.602562 CTCCCGCCTCATTTTTGCAA 59.397 50.000 0.00 0.0 0.00 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 128 4.657824 CCCACGTCGCCGACTGTT 62.658 66.667 16.07 0.00 37.88 3.16
113 129 3.403057 CCACGTCGCCGACTGTTG 61.403 66.667 16.07 9.25 37.88 3.33
114 130 2.657296 CACGTCGCCGACTGTTGT 60.657 61.111 16.07 2.51 37.88 3.32
115 131 2.657296 ACGTCGCCGACTGTTGTG 60.657 61.111 16.07 0.65 37.88 3.33
116 132 3.403057 CGTCGCCGACTGTTGTGG 61.403 66.667 16.07 0.00 35.63 4.17
117 133 3.712881 GTCGCCGACTGTTGTGGC 61.713 66.667 10.56 8.94 45.39 5.01
149 166 1.821753 CTCGTCACCAAGGAGATGACT 59.178 52.381 4.60 0.00 41.48 3.41
153 170 3.243569 CGTCACCAAGGAGATGACTATCC 60.244 52.174 0.05 0.00 40.51 2.59
185 202 1.143183 GGAGTCGGCCGCTAATGAA 59.857 57.895 23.51 0.00 0.00 2.57
200 217 2.050714 GAAGACGACGTCGCCACA 60.051 61.111 35.92 0.00 44.43 4.17
217 234 0.949105 ACAAACATCCGGAGCACGTC 60.949 55.000 11.34 0.00 42.24 4.34
302 319 1.686110 GGGTGGTGAGGACGAGGAT 60.686 63.158 0.00 0.00 0.00 3.24
336 355 0.450583 GGTGAGTGCGATGTAGACGA 59.549 55.000 0.00 0.00 0.00 4.20
439 529 2.093711 TCCCGTTCGATCACATCATGTT 60.094 45.455 0.00 0.00 0.00 2.71
442 532 2.537529 CGTTCGATCACATCATGTTGCC 60.538 50.000 3.61 0.00 0.00 4.52
444 534 2.989909 TCGATCACATCATGTTGCCTT 58.010 42.857 3.61 0.00 0.00 4.35
507 597 3.422303 GAAGTGGCGCGTGCATCA 61.422 61.111 24.18 9.72 45.35 3.07
526 616 4.336889 TCAGAAGGAAAGCGAAGAAGAA 57.663 40.909 0.00 0.00 0.00 2.52
551 641 3.611674 GGGTTGTTTGGTGGGCCG 61.612 66.667 0.00 0.00 37.67 6.13
612 702 1.133482 CAAGGTCCCCCAGTTTGTCTT 60.133 52.381 0.00 0.00 0.00 3.01
648 738 1.281960 CACGTCTGAACCGTCGAGT 59.718 57.895 0.00 0.00 36.17 4.18
655 745 4.353437 AACCGTCGAGTGGACCGC 62.353 66.667 10.49 0.00 42.99 5.68
683 774 0.033228 CGGCTGGATGGCAAAACAAA 59.967 50.000 0.00 0.00 41.89 2.83
693 784 2.230992 TGGCAAAACAAATCTGATCCGG 59.769 45.455 0.00 0.00 0.00 5.14
696 787 3.057596 GCAAAACAAATCTGATCCGGACA 60.058 43.478 6.12 6.41 0.00 4.02
752 843 2.030185 CCCTGGAATACGTCATCTACCG 60.030 54.545 0.00 0.00 0.00 4.02
771 886 7.602753 TCTACCGTAGAATACATCATCCATTG 58.397 38.462 5.75 0.00 43.24 2.82
775 890 5.349817 CGTAGAATACATCATCCATTGGAGC 59.650 44.000 11.78 0.00 43.24 4.70
791 906 0.808060 GAGCTGCTCTTACGCCTTCC 60.808 60.000 21.93 0.00 0.00 3.46
796 911 1.291132 GCTCTTACGCCTTCCATGTC 58.709 55.000 0.00 0.00 0.00 3.06
840 955 1.300620 CGTCCAGAACGCAGTCCAA 60.301 57.895 0.00 0.00 45.00 3.53
1095 1222 1.002624 GCCACCTTCCAATCGACCA 60.003 57.895 0.00 0.00 0.00 4.02
1253 1385 4.500116 GCGTCACTCTCGCCCTCC 62.500 72.222 0.00 0.00 46.61 4.30
1325 1457 2.611518 CCTGACGTGATCTGGTTCTTC 58.388 52.381 0.00 0.00 40.69 2.87
1456 1588 0.812811 CCTGTCACTGGATCATGGCG 60.813 60.000 0.00 0.00 0.00 5.69
1537 1669 4.073549 AGCTACTCCGCGTATTCTTCTAT 58.926 43.478 4.92 0.00 34.40 1.98
1578 1710 6.603940 ATCTTTTACTGCAAAATGGGCTAA 57.396 33.333 0.00 0.00 35.59 3.09
1689 1821 3.220110 GTGCTTGATCCATCATCCATGT 58.780 45.455 0.00 0.00 36.56 3.21
1967 2106 0.824759 ATTAGGTCCGCAGTCACCTC 59.175 55.000 0.00 0.00 42.41 3.85
2064 2203 1.136169 GCACGTTAACAGTAAAGGCGG 60.136 52.381 6.39 0.00 0.00 6.13
2084 2223 4.037446 GCGGGGCATTTCAATATGTCTTTA 59.963 41.667 0.00 0.00 30.90 1.85
2179 2318 3.995705 GCAATGCCAACTTATTTGAAGCA 59.004 39.130 0.00 0.00 36.97 3.91
2265 2404 7.275888 AGTGCAGAATCAGTTCAATTTGTTA 57.724 32.000 0.00 0.00 36.79 2.41
2267 2406 6.917477 GTGCAGAATCAGTTCAATTTGTTACA 59.083 34.615 0.00 0.00 36.79 2.41
2293 2432 0.552848 AGGGATGTGCCGGATTCAAT 59.447 50.000 5.05 0.00 37.63 2.57
2487 2626 9.624697 TTACTTTTGGTACTACATGTAACTACG 57.375 33.333 7.06 0.00 39.50 3.51
2497 2636 5.306532 ACATGTAACTACGACACCAGTAG 57.693 43.478 0.00 2.25 45.11 2.57
2559 2700 8.419076 TGTCTTTGTATTTTCTTTCTTTTGGC 57.581 30.769 0.00 0.00 0.00 4.52
2667 2809 6.015519 TGGCTACTGTTGTATTGCAAGAAAAT 60.016 34.615 4.94 0.00 37.83 1.82
2668 2810 7.175816 TGGCTACTGTTGTATTGCAAGAAAATA 59.824 33.333 4.94 0.00 37.83 1.40
2669 2811 7.698130 GGCTACTGTTGTATTGCAAGAAAATAG 59.302 37.037 16.52 16.52 37.83 1.73
2670 2812 7.218963 GCTACTGTTGTATTGCAAGAAAATAGC 59.781 37.037 17.66 13.99 37.83 2.97
2671 2813 7.219484 ACTGTTGTATTGCAAGAAAATAGCT 57.781 32.000 17.66 5.64 37.83 3.32
2672 2814 8.335532 ACTGTTGTATTGCAAGAAAATAGCTA 57.664 30.769 17.66 0.00 37.83 3.32
2673 2815 8.454106 ACTGTTGTATTGCAAGAAAATAGCTAG 58.546 33.333 17.66 6.99 37.83 3.42
2674 2816 8.335532 TGTTGTATTGCAAGAAAATAGCTAGT 57.664 30.769 4.94 0.00 37.83 2.57
2796 2938 4.097551 TCCCAATCACAAATGACTGTCA 57.902 40.909 13.60 13.60 37.79 3.58
2978 3120 4.873827 TGCGGAGGTTTGTAAACATATCTC 59.126 41.667 9.44 5.54 40.63 2.75
3052 3194 4.744795 TCTCAAGGCTAGAGAATGGAAC 57.255 45.455 0.00 0.00 39.07 3.62
3327 3469 7.298122 CGTATACAATTTCAAGCTCTTGTTGT 58.702 34.615 16.14 16.14 39.24 3.32
3695 3837 8.303876 GGCAGAATTGAAGAGGTTAATGTTTAA 58.696 33.333 0.00 0.00 0.00 1.52
3876 4018 3.055385 TGGCGCTTTAGGATAACTCTTGT 60.055 43.478 7.64 0.00 0.00 3.16
3939 4081 6.949352 ATTATTAAGACATGCTGGAGGTTG 57.051 37.500 0.00 0.00 0.00 3.77
4092 4235 7.339212 ACGGAATGGTCTGAAATTTCATGAATA 59.661 33.333 20.76 12.19 36.46 1.75
4145 4288 3.350833 AGTCTCTGCCCATCAATGTTTC 58.649 45.455 0.00 0.00 0.00 2.78
4262 4406 3.104843 TGTTTAAATGCTTGTGCCACC 57.895 42.857 0.00 0.00 38.71 4.61
4263 4407 2.432146 TGTTTAAATGCTTGTGCCACCA 59.568 40.909 0.00 0.00 38.71 4.17
4287 4431 6.313905 CACAGTCCTTGAGCTCGTATAAAATT 59.686 38.462 9.64 0.00 0.00 1.82
4349 4493 2.543777 TAGAGTGGTTGACAACTGCC 57.456 50.000 17.52 2.42 0.00 4.85
4431 4575 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
4440 4584 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
4441 4585 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
4442 4586 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
4445 4589 8.773404 AATATAAGAGCGTTTTTGACACTAGT 57.227 30.769 0.00 0.00 0.00 2.57
4446 4590 4.795970 AAGAGCGTTTTTGACACTAGTG 57.204 40.909 21.44 21.44 0.00 2.74
4448 4592 4.940463 AGAGCGTTTTTGACACTAGTGTA 58.060 39.130 27.98 11.50 45.05 2.90
4598 4897 2.076863 GGTGTTGGTCAGAGCACATAC 58.923 52.381 0.48 0.00 33.88 2.39
4643 4942 7.718314 TCTCAGATGCTTACTACTCCGTATTTA 59.282 37.037 0.00 0.00 0.00 1.40
4668 4967 7.873739 TTAAGTAGGCTACGACAAAAACTAC 57.126 36.000 18.41 0.00 0.00 2.73
4698 4997 6.839124 TGATAGTTTTCACCTTCCGTAGTA 57.161 37.500 0.00 0.00 0.00 1.82
4806 5105 9.710900 TGACATAGTTATATCTTACTGCCAATG 57.289 33.333 0.00 0.00 0.00 2.82
4864 5163 6.657541 TGGGATCAACTAATCAACCAACTTAC 59.342 38.462 0.00 0.00 0.00 2.34
4992 5291 6.018588 CCGTGATCGCATAATTTTGGTAAGTA 60.019 38.462 7.12 0.00 35.54 2.24
4994 5293 7.530525 CGTGATCGCATAATTTTGGTAAGTATG 59.469 37.037 7.12 0.00 0.00 2.39
5225 5543 6.324770 TCTGAGCTTGTCCTATACATGAATGA 59.675 38.462 0.00 0.00 38.10 2.57
5282 5600 4.228210 ACATCAAGGGATATGACCACACTT 59.772 41.667 0.00 0.00 30.87 3.16
5515 6010 4.325741 CGTGACATTTTTGCTGTTGTTTGA 59.674 37.500 0.00 0.00 0.00 2.69
5567 6062 5.105187 TGTTGATGATCTGAACTACCCTGAG 60.105 44.000 0.00 0.00 0.00 3.35
6094 6600 0.329596 ATTGCTTCTCCCCTGACCAC 59.670 55.000 0.00 0.00 0.00 4.16
6259 6765 2.285368 ATGGGGGAGCAGAACGGA 60.285 61.111 0.00 0.00 0.00 4.69
6306 6812 4.003788 CGCCACCACCGAAGACCT 62.004 66.667 0.00 0.00 0.00 3.85
6309 6815 2.261671 CACCACCGAAGACCTCCG 59.738 66.667 0.00 0.00 0.00 4.63
6310 6816 2.116772 ACCACCGAAGACCTCCGA 59.883 61.111 0.00 0.00 0.00 4.55
6311 6817 1.305046 ACCACCGAAGACCTCCGAT 60.305 57.895 0.00 0.00 0.00 4.18
6312 6818 1.321074 ACCACCGAAGACCTCCGATC 61.321 60.000 0.00 0.00 0.00 3.69
6313 6819 1.038130 CCACCGAAGACCTCCGATCT 61.038 60.000 0.00 0.00 0.00 2.75
6314 6820 0.101399 CACCGAAGACCTCCGATCTG 59.899 60.000 0.00 0.00 0.00 2.90
6322 6862 0.757188 ACCTCCGATCTGCTCCGATT 60.757 55.000 0.00 0.00 0.00 3.34
6356 6896 0.827507 ACCTGTCCATGTTGGTTGGC 60.828 55.000 0.00 0.00 39.03 4.52
6361 6902 1.077265 CCATGTTGGTTGGCTCCCT 59.923 57.895 0.00 0.00 31.35 4.20
6366 6907 4.649705 TGGTTGGCTCCCTCGGGA 62.650 66.667 4.32 4.32 42.90 5.14
6413 6967 0.464036 TCCGTGATGCATAGGGTGAC 59.536 55.000 0.00 0.00 0.00 3.67
6432 6986 2.520536 GCCGGCCTGGGATCATAGT 61.521 63.158 18.11 0.00 38.63 2.12
6558 7118 4.558538 CTTGTAAGCTTCAGCACAGTTT 57.441 40.909 0.00 0.00 45.16 2.66
6565 7125 2.672381 GCTTCAGCACAGTTTTGCAAAA 59.328 40.909 20.46 20.46 45.62 2.44
6572 7132 3.546616 GCACAGTTTTGCAAAAATGAGGC 60.547 43.478 42.17 37.48 44.19 4.70
6584 7144 0.692419 AATGAGGCGGGAGGATGAGT 60.692 55.000 0.00 0.00 0.00 3.41
6600 7160 5.561967 AGGATGAGTAGGGTAGGATAGGATT 59.438 44.000 0.00 0.00 0.00 3.01
6603 7163 4.202792 TGAGTAGGGTAGGATAGGATTGGG 60.203 50.000 0.00 0.00 0.00 4.12
6604 7164 4.002050 AGTAGGGTAGGATAGGATTGGGA 58.998 47.826 0.00 0.00 0.00 4.37
6606 7166 2.157989 AGGGTAGGATAGGATTGGGACC 60.158 54.545 0.00 0.00 0.00 4.46
6607 7167 2.267192 GGTAGGATAGGATTGGGACCC 58.733 57.143 2.45 2.45 0.00 4.46
6608 7168 2.428783 GGTAGGATAGGATTGGGACCCA 60.429 54.545 9.95 9.95 0.00 4.51
6609 7169 2.124560 AGGATAGGATTGGGACCCAG 57.875 55.000 14.35 0.00 33.81 4.45
6610 7170 0.402121 GGATAGGATTGGGACCCAGC 59.598 60.000 14.35 10.05 33.81 4.85
6611 7171 1.140312 GATAGGATTGGGACCCAGCA 58.860 55.000 14.35 0.00 33.81 4.41
6620 7185 2.113986 GACCCAGCAAGCAGTGGT 59.886 61.111 0.00 0.00 38.97 4.16
6633 7198 4.980805 GTGGTGGAGCAACGCCGA 62.981 66.667 0.00 0.00 43.96 5.54
6694 7288 1.725557 GGCGACGGTCTCTGCAGATA 61.726 60.000 18.63 7.40 0.00 1.98
6813 7417 1.153329 AACAAACGCGTGAGGTCCA 60.153 52.632 14.98 0.00 0.00 4.02
6814 7418 1.157870 AACAAACGCGTGAGGTCCAG 61.158 55.000 14.98 0.00 0.00 3.86
6815 7419 1.300620 CAAACGCGTGAGGTCCAGA 60.301 57.895 14.98 0.00 0.00 3.86
6856 7465 3.015383 CCCCCACCATCCCGAATT 58.985 61.111 0.00 0.00 0.00 2.17
6857 7466 1.152756 CCCCCACCATCCCGAATTC 60.153 63.158 0.00 0.00 0.00 2.17
6858 7467 1.152756 CCCCACCATCCCGAATTCC 60.153 63.158 0.00 0.00 0.00 3.01
6859 7468 1.525995 CCCACCATCCCGAATTCCG 60.526 63.158 0.00 0.00 38.18 4.30
6968 7602 2.232696 GCCGGCCCTTCTTCATTAAAAA 59.767 45.455 18.11 0.00 0.00 1.94
6987 7621 4.922471 AAAATCTCTAGCTAGACCCGTC 57.078 45.455 19.72 0.00 0.00 4.79
6992 7626 4.279145 TCTCTAGCTAGACCCGTCAATTT 58.721 43.478 19.72 0.00 0.00 1.82
6993 7627 4.710375 TCTCTAGCTAGACCCGTCAATTTT 59.290 41.667 19.72 0.00 0.00 1.82
7049 7795 2.048023 CATGCCCCTCATGCAACGT 61.048 57.895 0.00 0.00 45.20 3.99
7083 7829 2.202824 CGCGCCGGTTAATCTCCA 60.203 61.111 1.90 0.00 0.00 3.86
7087 7833 0.859232 CGCCGGTTAATCTCCATTCG 59.141 55.000 1.90 0.00 0.00 3.34
7088 7834 0.586802 GCCGGTTAATCTCCATTCGC 59.413 55.000 1.90 0.00 0.00 4.70
7089 7835 1.810412 GCCGGTTAATCTCCATTCGCT 60.810 52.381 1.90 0.00 0.00 4.93
7092 7838 3.242739 CCGGTTAATCTCCATTCGCTTTG 60.243 47.826 0.00 0.00 0.00 2.77
7093 7839 3.242739 CGGTTAATCTCCATTCGCTTTGG 60.243 47.826 0.00 0.00 35.45 3.28
7094 7840 3.945285 GGTTAATCTCCATTCGCTTTGGA 59.055 43.478 1.65 1.65 40.96 3.53
7095 7841 4.398044 GGTTAATCTCCATTCGCTTTGGAA 59.602 41.667 3.03 0.00 42.56 3.53
7097 7843 4.907879 AATCTCCATTCGCTTTGGAATC 57.092 40.909 3.03 0.00 42.56 2.52
7098 7844 3.634397 TCTCCATTCGCTTTGGAATCT 57.366 42.857 3.03 0.00 42.56 2.40
7099 7845 3.273434 TCTCCATTCGCTTTGGAATCTG 58.727 45.455 3.03 0.00 42.56 2.90
7100 7846 1.745087 TCCATTCGCTTTGGAATCTGC 59.255 47.619 0.00 0.00 40.29 4.26
7101 7847 1.473677 CCATTCGCTTTGGAATCTGCA 59.526 47.619 0.00 0.00 34.50 4.41
7105 7851 3.052455 TCGCTTTGGAATCTGCAGTAA 57.948 42.857 14.67 0.00 0.00 2.24
7106 7852 2.742053 TCGCTTTGGAATCTGCAGTAAC 59.258 45.455 14.67 5.96 0.00 2.50
7107 7853 2.474526 CGCTTTGGAATCTGCAGTAACG 60.475 50.000 14.67 2.60 0.00 3.18
7108 7854 2.484264 GCTTTGGAATCTGCAGTAACGT 59.516 45.455 14.67 0.00 0.00 3.99
7109 7855 3.058224 GCTTTGGAATCTGCAGTAACGTT 60.058 43.478 14.67 5.88 0.00 3.99
7110 7856 4.712763 CTTTGGAATCTGCAGTAACGTTC 58.287 43.478 14.67 10.88 0.00 3.95
7111 7857 3.394674 TGGAATCTGCAGTAACGTTCA 57.605 42.857 14.67 0.00 0.00 3.18
7112 7858 3.064207 TGGAATCTGCAGTAACGTTCAC 58.936 45.455 14.67 1.76 0.00 3.18
7113 7859 2.415512 GGAATCTGCAGTAACGTTCACC 59.584 50.000 14.67 0.00 0.00 4.02
7114 7860 1.710013 ATCTGCAGTAACGTTCACCG 58.290 50.000 14.67 0.00 44.03 4.94
7115 7861 0.942410 TCTGCAGTAACGTTCACCGC 60.942 55.000 14.67 6.61 41.42 5.68
7116 7862 2.210524 CTGCAGTAACGTTCACCGCG 62.211 60.000 2.82 0.00 41.42 6.46
7117 7863 3.007070 GCAGTAACGTTCACCGCGG 62.007 63.158 26.86 26.86 41.42 6.46
7118 7864 1.662446 CAGTAACGTTCACCGCGGT 60.662 57.895 28.70 28.70 41.42 5.68
7119 7865 1.067916 AGTAACGTTCACCGCGGTT 59.932 52.632 32.11 16.45 41.42 4.44
7120 7866 0.530431 AGTAACGTTCACCGCGGTTT 60.530 50.000 32.11 22.61 41.42 3.27
7121 7867 0.383368 GTAACGTTCACCGCGGTTTG 60.383 55.000 32.11 19.71 41.42 2.93
7122 7868 0.529337 TAACGTTCACCGCGGTTTGA 60.529 50.000 32.11 22.02 41.42 2.69
7123 7869 1.768112 AACGTTCACCGCGGTTTGAG 61.768 55.000 32.11 22.34 41.42 3.02
7124 7870 2.943653 GTTCACCGCGGTTTGAGG 59.056 61.111 32.11 17.93 44.31 3.86
7125 7871 2.281208 TTCACCGCGGTTTGAGGG 60.281 61.111 32.11 17.08 42.78 4.30
7126 7872 3.835790 TTCACCGCGGTTTGAGGGG 62.836 63.158 32.11 16.24 43.43 4.79
7127 7873 4.323477 CACCGCGGTTTGAGGGGA 62.323 66.667 32.11 0.00 45.22 4.81
7128 7874 3.327404 ACCGCGGTTTGAGGGGAT 61.327 61.111 28.70 0.00 42.78 3.85
7129 7875 2.045340 CCGCGGTTTGAGGGGATT 60.045 61.111 19.50 0.00 43.49 3.01
7130 7876 2.112815 CCGCGGTTTGAGGGGATTC 61.113 63.158 19.50 0.00 43.49 2.52
7131 7877 1.376683 CGCGGTTTGAGGGGATTCA 60.377 57.895 0.00 0.00 0.00 2.57
7132 7878 0.958382 CGCGGTTTGAGGGGATTCAA 60.958 55.000 0.00 0.00 35.38 2.69
7133 7879 0.811281 GCGGTTTGAGGGGATTCAAG 59.189 55.000 0.00 0.00 38.25 3.02
7134 7880 1.463674 CGGTTTGAGGGGATTCAAGG 58.536 55.000 0.00 0.00 38.25 3.61
7135 7881 1.852633 GGTTTGAGGGGATTCAAGGG 58.147 55.000 0.00 0.00 38.25 3.95
7136 7882 1.357761 GGTTTGAGGGGATTCAAGGGA 59.642 52.381 0.00 0.00 38.25 4.20
7137 7883 2.225267 GGTTTGAGGGGATTCAAGGGAA 60.225 50.000 0.00 0.00 38.25 3.97
7138 7884 3.092301 GTTTGAGGGGATTCAAGGGAAG 58.908 50.000 0.00 0.00 38.25 3.46
7139 7885 1.298953 TGAGGGGATTCAAGGGAAGG 58.701 55.000 0.00 0.00 36.25 3.46
7140 7886 0.106469 GAGGGGATTCAAGGGAAGGC 60.106 60.000 0.00 0.00 36.25 4.35
7141 7887 0.850883 AGGGGATTCAAGGGAAGGCA 60.851 55.000 0.00 0.00 36.25 4.75
7142 7888 0.041090 GGGGATTCAAGGGAAGGCAA 59.959 55.000 0.00 0.00 36.25 4.52
7143 7889 1.552254 GGGGATTCAAGGGAAGGCAAA 60.552 52.381 0.00 0.00 36.25 3.68
7144 7890 2.470990 GGGATTCAAGGGAAGGCAAAT 58.529 47.619 0.00 0.00 36.25 2.32
7145 7891 2.840038 GGGATTCAAGGGAAGGCAAATT 59.160 45.455 0.00 0.00 36.25 1.82
7146 7892 4.030216 GGGATTCAAGGGAAGGCAAATTA 58.970 43.478 0.00 0.00 36.25 1.40
7147 7893 4.469586 GGGATTCAAGGGAAGGCAAATTAA 59.530 41.667 0.00 0.00 36.25 1.40
7148 7894 5.395657 GGGATTCAAGGGAAGGCAAATTAAG 60.396 44.000 0.00 0.00 36.25 1.85
7149 7895 4.535526 TTCAAGGGAAGGCAAATTAAGC 57.464 40.909 0.00 0.00 0.00 3.09
7150 7896 3.778265 TCAAGGGAAGGCAAATTAAGCT 58.222 40.909 3.22 0.00 0.00 3.74
7151 7897 3.511146 TCAAGGGAAGGCAAATTAAGCTG 59.489 43.478 0.00 0.00 0.00 4.24
7152 7898 2.460669 AGGGAAGGCAAATTAAGCTGG 58.539 47.619 0.00 0.00 0.00 4.85
7153 7899 2.179427 GGGAAGGCAAATTAAGCTGGT 58.821 47.619 0.00 0.00 0.00 4.00
7154 7900 2.166459 GGGAAGGCAAATTAAGCTGGTC 59.834 50.000 0.00 0.00 0.00 4.02
7155 7901 3.092301 GGAAGGCAAATTAAGCTGGTCT 58.908 45.455 0.00 0.00 0.00 3.85
7156 7902 3.129462 GGAAGGCAAATTAAGCTGGTCTC 59.871 47.826 0.00 0.00 0.00 3.36
7157 7903 3.728385 AGGCAAATTAAGCTGGTCTCT 57.272 42.857 0.00 0.00 0.00 3.10
7158 7904 3.350833 AGGCAAATTAAGCTGGTCTCTG 58.649 45.455 0.00 0.00 0.00 3.35
7159 7905 3.009473 AGGCAAATTAAGCTGGTCTCTGA 59.991 43.478 0.00 0.00 0.00 3.27
7160 7906 3.127721 GGCAAATTAAGCTGGTCTCTGAC 59.872 47.826 0.00 0.00 0.00 3.51
7161 7907 3.181516 GCAAATTAAGCTGGTCTCTGACG 60.182 47.826 0.00 0.00 32.65 4.35
7162 7908 4.245660 CAAATTAAGCTGGTCTCTGACGA 58.754 43.478 0.00 0.00 32.65 4.20
7163 7909 4.537135 AATTAAGCTGGTCTCTGACGAA 57.463 40.909 0.00 0.00 32.65 3.85
7164 7910 4.537135 ATTAAGCTGGTCTCTGACGAAA 57.463 40.909 0.00 0.00 32.65 3.46
7165 7911 4.537135 TTAAGCTGGTCTCTGACGAAAT 57.463 40.909 0.00 0.00 32.65 2.17
7166 7912 5.654603 TTAAGCTGGTCTCTGACGAAATA 57.345 39.130 0.00 0.00 32.65 1.40
7167 7913 4.537135 AAGCTGGTCTCTGACGAAATAA 57.463 40.909 0.00 0.00 32.65 1.40
7168 7914 4.744795 AGCTGGTCTCTGACGAAATAAT 57.255 40.909 0.00 0.00 32.65 1.28
7169 7915 4.688021 AGCTGGTCTCTGACGAAATAATC 58.312 43.478 0.00 0.00 32.65 1.75
7170 7916 4.160439 AGCTGGTCTCTGACGAAATAATCA 59.840 41.667 0.00 0.00 32.65 2.57
7171 7917 4.268884 GCTGGTCTCTGACGAAATAATCAC 59.731 45.833 0.00 0.00 32.65 3.06
7172 7918 4.755411 TGGTCTCTGACGAAATAATCACC 58.245 43.478 0.00 0.00 32.65 4.02
7173 7919 4.120589 GGTCTCTGACGAAATAATCACCC 58.879 47.826 0.00 0.00 32.65 4.61
7174 7920 3.797256 GTCTCTGACGAAATAATCACCCG 59.203 47.826 0.00 0.00 0.00 5.28
7175 7921 3.697542 TCTCTGACGAAATAATCACCCGA 59.302 43.478 0.00 0.00 0.00 5.14
7176 7922 3.777478 TCTGACGAAATAATCACCCGAC 58.223 45.455 0.00 0.00 0.00 4.79
7177 7923 3.193903 TCTGACGAAATAATCACCCGACA 59.806 43.478 0.00 0.00 0.00 4.35
7178 7924 3.927854 TGACGAAATAATCACCCGACAA 58.072 40.909 0.00 0.00 0.00 3.18
7179 7925 4.509616 TGACGAAATAATCACCCGACAAT 58.490 39.130 0.00 0.00 0.00 2.71
7180 7926 4.331443 TGACGAAATAATCACCCGACAATG 59.669 41.667 0.00 0.00 0.00 2.82
7181 7927 3.625764 ACGAAATAATCACCCGACAATGG 59.374 43.478 0.00 0.00 0.00 3.16
7191 7937 3.818787 GACAATGGGCGCCTGCTG 61.819 66.667 28.56 21.68 42.25 4.41
7198 7944 4.479993 GGCGCCTGCTGGACTGAT 62.480 66.667 22.15 0.00 42.25 2.90
7199 7945 2.501128 GCGCCTGCTGGACTGATA 59.499 61.111 14.77 0.00 38.39 2.15
7200 7946 1.070445 GCGCCTGCTGGACTGATAT 59.930 57.895 14.77 0.00 38.39 1.63
7201 7947 0.948141 GCGCCTGCTGGACTGATATC 60.948 60.000 14.77 0.00 38.39 1.63
7202 7948 0.390492 CGCCTGCTGGACTGATATCA 59.610 55.000 14.77 5.07 34.57 2.15
7204 7950 1.690893 GCCTGCTGGACTGATATCAGA 59.309 52.381 34.16 14.81 46.36 3.27
7205 7951 2.302445 GCCTGCTGGACTGATATCAGAT 59.698 50.000 34.16 20.30 46.36 2.90
7206 7952 3.244491 GCCTGCTGGACTGATATCAGATT 60.244 47.826 34.16 16.60 46.36 2.40
7207 7953 4.746089 GCCTGCTGGACTGATATCAGATTT 60.746 45.833 34.16 15.89 46.36 2.17
7208 7954 4.996122 CCTGCTGGACTGATATCAGATTTC 59.004 45.833 34.16 22.25 46.36 2.17
7209 7955 4.625028 TGCTGGACTGATATCAGATTTCG 58.375 43.478 34.16 19.57 46.59 3.46
7210 7956 4.100035 TGCTGGACTGATATCAGATTTCGT 59.900 41.667 34.16 15.22 46.59 3.85
7211 7957 5.053145 GCTGGACTGATATCAGATTTCGTT 58.947 41.667 34.16 13.77 46.59 3.85
7212 7958 5.525378 GCTGGACTGATATCAGATTTCGTTT 59.475 40.000 34.16 13.06 46.59 3.60
7213 7959 6.037610 GCTGGACTGATATCAGATTTCGTTTT 59.962 38.462 34.16 12.37 46.59 2.43
7214 7960 7.539712 TGGACTGATATCAGATTTCGTTTTC 57.460 36.000 34.16 19.11 46.59 2.29
7215 7961 7.102993 TGGACTGATATCAGATTTCGTTTTCA 58.897 34.615 34.16 14.63 46.59 2.69
7216 7962 7.770433 TGGACTGATATCAGATTTCGTTTTCAT 59.230 33.333 34.16 10.99 46.59 2.57
7217 7963 8.279103 GGACTGATATCAGATTTCGTTTTCATC 58.721 37.037 34.16 17.88 46.59 2.92
7218 7964 8.954950 ACTGATATCAGATTTCGTTTTCATCT 57.045 30.769 34.16 7.51 46.59 2.90
7219 7965 9.039870 ACTGATATCAGATTTCGTTTTCATCTC 57.960 33.333 34.16 0.00 46.59 2.75
7220 7966 8.370493 TGATATCAGATTTCGTTTTCATCTCC 57.630 34.615 0.00 0.00 0.00 3.71
7221 7967 7.442364 TGATATCAGATTTCGTTTTCATCTCCC 59.558 37.037 0.00 0.00 0.00 4.30
7222 7968 4.261801 TCAGATTTCGTTTTCATCTCCCC 58.738 43.478 0.00 0.00 0.00 4.81
7223 7969 3.378427 CAGATTTCGTTTTCATCTCCCCC 59.622 47.826 0.00 0.00 0.00 5.40
7224 7970 3.267031 AGATTTCGTTTTCATCTCCCCCT 59.733 43.478 0.00 0.00 0.00 4.79
7225 7971 4.473559 AGATTTCGTTTTCATCTCCCCCTA 59.526 41.667 0.00 0.00 0.00 3.53
7226 7972 4.855298 TTTCGTTTTCATCTCCCCCTAT 57.145 40.909 0.00 0.00 0.00 2.57
7227 7973 4.855298 TTCGTTTTCATCTCCCCCTATT 57.145 40.909 0.00 0.00 0.00 1.73
7228 7974 4.855298 TCGTTTTCATCTCCCCCTATTT 57.145 40.909 0.00 0.00 0.00 1.40
7229 7975 5.961398 TCGTTTTCATCTCCCCCTATTTA 57.039 39.130 0.00 0.00 0.00 1.40
7230 7976 6.316280 TCGTTTTCATCTCCCCCTATTTAA 57.684 37.500 0.00 0.00 0.00 1.52
7231 7977 6.117488 TCGTTTTCATCTCCCCCTATTTAAC 58.883 40.000 0.00 0.00 0.00 2.01
7232 7978 6.069847 TCGTTTTCATCTCCCCCTATTTAACT 60.070 38.462 0.00 0.00 0.00 2.24
7233 7979 6.602009 CGTTTTCATCTCCCCCTATTTAACTT 59.398 38.462 0.00 0.00 0.00 2.66
7234 7980 7.122204 CGTTTTCATCTCCCCCTATTTAACTTT 59.878 37.037 0.00 0.00 0.00 2.66
7235 7981 9.470399 GTTTTCATCTCCCCCTATTTAACTTTA 57.530 33.333 0.00 0.00 0.00 1.85
7238 7984 9.862149 TTCATCTCCCCCTATTTAACTTTATTC 57.138 33.333 0.00 0.00 0.00 1.75
7239 7985 9.009675 TCATCTCCCCCTATTTAACTTTATTCA 57.990 33.333 0.00 0.00 0.00 2.57
7240 7986 9.067986 CATCTCCCCCTATTTAACTTTATTCAC 57.932 37.037 0.00 0.00 0.00 3.18
7241 7987 8.165267 TCTCCCCCTATTTAACTTTATTCACA 57.835 34.615 0.00 0.00 0.00 3.58
7242 7988 8.616598 TCTCCCCCTATTTAACTTTATTCACAA 58.383 33.333 0.00 0.00 0.00 3.33
7243 7989 9.250246 CTCCCCCTATTTAACTTTATTCACAAA 57.750 33.333 0.00 0.00 0.00 2.83
7244 7990 9.250246 TCCCCCTATTTAACTTTATTCACAAAG 57.750 33.333 0.00 0.00 40.62 2.77
7245 7991 7.979537 CCCCCTATTTAACTTTATTCACAAAGC 59.020 37.037 0.00 0.00 38.79 3.51
7246 7992 7.979537 CCCCTATTTAACTTTATTCACAAAGCC 59.020 37.037 0.00 0.00 38.79 4.35
7247 7993 7.979537 CCCTATTTAACTTTATTCACAAAGCCC 59.020 37.037 0.00 0.00 38.79 5.19
7248 7994 7.700656 CCTATTTAACTTTATTCACAAAGCCCG 59.299 37.037 0.00 0.00 38.79 6.13
7249 7995 3.934457 AACTTTATTCACAAAGCCCGG 57.066 42.857 0.00 0.00 38.79 5.73
7250 7996 1.544246 ACTTTATTCACAAAGCCCGGC 59.456 47.619 0.00 0.00 38.79 6.13
7251 7997 1.543802 CTTTATTCACAAAGCCCGGCA 59.456 47.619 13.15 0.00 0.00 5.69
7252 7998 1.621992 TTATTCACAAAGCCCGGCAA 58.378 45.000 13.15 0.00 0.00 4.52
7253 7999 0.885196 TATTCACAAAGCCCGGCAAC 59.115 50.000 13.15 0.00 0.00 4.17
7269 8015 2.665185 ACGGCCTTCGCAGTTCAC 60.665 61.111 0.00 0.00 40.84 3.18
7270 8016 3.423154 CGGCCTTCGCAGTTCACC 61.423 66.667 0.00 0.00 36.38 4.02
7271 8017 2.281484 GGCCTTCGCAGTTCACCA 60.281 61.111 0.00 0.00 36.38 4.17
7272 8018 2.617274 GGCCTTCGCAGTTCACCAC 61.617 63.158 0.00 0.00 36.38 4.16
7273 8019 1.891919 GCCTTCGCAGTTCACCACA 60.892 57.895 0.00 0.00 34.03 4.17
7274 8020 1.941812 CCTTCGCAGTTCACCACAC 59.058 57.895 0.00 0.00 0.00 3.82
7275 8021 1.507141 CCTTCGCAGTTCACCACACC 61.507 60.000 0.00 0.00 0.00 4.16
7276 8022 1.507141 CTTCGCAGTTCACCACACCC 61.507 60.000 0.00 0.00 0.00 4.61
7277 8023 2.951475 TTCGCAGTTCACCACACCCC 62.951 60.000 0.00 0.00 0.00 4.95
7291 8037 3.181439 CCACACCCCTCTTCTTCTTCTTT 60.181 47.826 0.00 0.00 0.00 2.52
7307 8053 1.002773 TCTTTCAAACCTAGCCGTCCC 59.997 52.381 0.00 0.00 0.00 4.46
7326 8072 3.123804 CCCAAACGATGTCTCTATTCGG 58.876 50.000 0.00 0.00 37.20 4.30
7405 8153 2.125512 GATAGCGCCGGCCATAGG 60.126 66.667 23.46 7.50 41.24 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 1.690893 GAGCAGCAGATGGAGGTCATA 59.309 52.381 0.00 0.00 35.97 2.15
82 83 3.688159 GTGGGGTGCGGTCTACGT 61.688 66.667 0.00 0.00 46.52 3.57
120 136 4.436998 GGTGACGAGGACCAGCCG 62.437 72.222 0.00 0.00 43.43 5.52
121 137 2.788191 CTTGGTGACGAGGACCAGCC 62.788 65.000 0.00 0.00 44.36 4.85
122 138 1.374758 CTTGGTGACGAGGACCAGC 60.375 63.158 0.00 0.00 44.36 4.85
123 139 4.996976 CTTGGTGACGAGGACCAG 57.003 61.111 0.00 0.00 44.36 4.00
149 166 0.178998 CCTCGACGAAGGAGGGGATA 60.179 60.000 11.60 0.00 45.97 2.59
171 188 1.226859 CGTCTTCATTAGCGGCCGA 60.227 57.895 33.48 8.89 0.00 5.54
185 202 1.947642 GTTTGTGGCGACGTCGTCT 60.948 57.895 38.22 0.00 45.41 4.18
200 217 1.375523 GGACGTGCTCCGGATGTTT 60.376 57.895 3.57 0.00 42.24 2.83
239 256 4.003788 CAAGTCGTGGGCCTCGGT 62.004 66.667 25.81 12.33 0.00 4.69
424 514 2.696989 AGGCAACATGATGTGATCGA 57.303 45.000 0.00 0.00 41.41 3.59
507 597 3.070748 GCTTCTTCTTCGCTTTCCTTCT 58.929 45.455 0.00 0.00 0.00 2.85
526 616 2.520741 CAAACAACCCCACCCGCT 60.521 61.111 0.00 0.00 0.00 5.52
551 641 1.069378 CGTTCGCGTCTGACTAACCC 61.069 60.000 5.77 0.00 35.57 4.11
638 728 4.353437 GCGGTCCACTCGACGGTT 62.353 66.667 0.00 0.00 42.99 4.44
648 738 3.424300 CGGTCGTATAGCGGTCCA 58.576 61.111 0.00 0.00 45.25 4.02
655 745 0.243907 CCATCCAGCCGGTCGTATAG 59.756 60.000 1.90 0.00 0.00 1.31
666 756 2.997986 CAGATTTGTTTTGCCATCCAGC 59.002 45.455 0.00 0.00 0.00 4.85
667 757 4.524316 TCAGATTTGTTTTGCCATCCAG 57.476 40.909 0.00 0.00 0.00 3.86
683 774 0.179100 CGCAACTGTCCGGATCAGAT 60.179 55.000 29.15 20.03 36.81 2.90
693 784 1.126846 CTCAAATCGTCCGCAACTGTC 59.873 52.381 0.00 0.00 0.00 3.51
696 787 0.673644 CCCTCAAATCGTCCGCAACT 60.674 55.000 0.00 0.00 0.00 3.16
735 826 5.679734 TTCTACGGTAGATGACGTATTCC 57.320 43.478 17.96 0.00 43.59 3.01
752 843 6.370994 CAGCTCCAATGGATGATGTATTCTAC 59.629 42.308 0.87 0.00 0.00 2.59
771 886 0.808060 GAAGGCGTAAGAGCAGCTCC 60.808 60.000 19.40 2.88 43.02 4.70
775 890 1.293924 CATGGAAGGCGTAAGAGCAG 58.706 55.000 0.00 0.00 43.02 4.24
840 955 9.301153 GCGATGGAAATAAAAAGTCAATGTATT 57.699 29.630 0.00 0.00 0.00 1.89
934 1049 4.796231 GATGCTCGGTGCGACGGT 62.796 66.667 0.00 0.00 46.63 4.83
1253 1385 2.042435 AGCGGAGAAGGGGAGAGG 60.042 66.667 0.00 0.00 0.00 3.69
1456 1588 4.487019 GGCACCGAGAATAGCTAATCTAC 58.513 47.826 11.36 5.06 0.00 2.59
1537 1669 3.941629 AGATTTAGGACATCCCAGGCTA 58.058 45.455 0.00 0.00 37.41 3.93
1578 1710 2.548464 ACCAAGAGAGGCTCAGAGAT 57.452 50.000 18.26 0.00 32.06 2.75
1892 2030 4.193826 TCCACATTAACTCAGCTCACTC 57.806 45.455 0.00 0.00 0.00 3.51
2002 2141 3.181449 TGAACATCGGAGGTCAAAAAGGA 60.181 43.478 0.00 0.00 0.00 3.36
2064 2203 6.752168 AGCATAAAGACATATTGAAATGCCC 58.248 36.000 0.00 0.00 39.36 5.36
2134 2273 2.778299 ACCTTCAAGATTTAGCGCACA 58.222 42.857 11.47 0.00 0.00 4.57
2179 2318 9.747898 TCCCAATTTCACTACACTAACAATTAT 57.252 29.630 0.00 0.00 0.00 1.28
2293 2432 5.375773 TGGTCAGAATCAGACATTGTTCAA 58.624 37.500 8.04 0.00 37.74 2.69
2473 2612 5.306532 ACTGGTGTCGTAGTTACATGTAG 57.693 43.478 5.56 0.00 0.00 2.74
2559 2700 4.730949 ACATTTGATGAGCCTTCAATGG 57.269 40.909 0.00 0.00 36.78 3.16
2669 2811 4.571372 CCACTAGTGGTAGCTAACTAGC 57.429 50.000 30.57 10.30 46.51 3.42
2775 2917 4.097551 TGACAGTCATTTGTGATTGGGA 57.902 40.909 0.00 0.00 31.01 4.37
2869 3011 5.698089 TCTGCGATTCATCAGATTATGGTTC 59.302 40.000 0.00 0.00 34.69 3.62
2880 3022 5.818857 TGAAATTCTGATCTGCGATTCATCA 59.181 36.000 0.00 0.00 0.00 3.07
2944 3086 0.537188 ACCTCCGCAACCACTGATAG 59.463 55.000 0.00 0.00 0.00 2.08
2978 3120 4.793071 TGGTGCACATTCTGAAATAAACG 58.207 39.130 20.43 0.00 0.00 3.60
3052 3194 4.082245 ACCATTTTATGAGCCTTGGAAACG 60.082 41.667 0.00 0.00 0.00 3.60
3344 3486 9.197694 GTCAGCGATTAGTGATTAACAGAATAT 57.802 33.333 0.00 0.00 0.00 1.28
3365 3507 4.503910 TGTACATGTCCAATGTAGTCAGC 58.496 43.478 0.00 0.00 35.43 4.26
3648 3790 5.001232 GCCAACTTTGTTCAGTAGTATCCA 58.999 41.667 0.00 0.00 0.00 3.41
3712 3854 4.202441 CTGGGACAACATTCTATGGAAGG 58.798 47.826 1.58 1.58 38.70 3.46
3869 4011 7.365741 CAATAATCACAGCTTCAAACAAGAGT 58.634 34.615 0.00 0.00 0.00 3.24
3876 4018 4.219070 AGCAGCAATAATCACAGCTTCAAA 59.781 37.500 0.00 0.00 34.61 2.69
3939 4081 4.651045 AGAAATAAATGAGGAACATGCCCC 59.349 41.667 0.00 0.00 39.39 5.80
4092 4235 7.209475 ACACATAGCAAGCAAAAACATAAGTT 58.791 30.769 0.00 0.00 40.40 2.66
4102 4245 3.491342 TGGGTAACACATAGCAAGCAAA 58.509 40.909 0.00 0.00 39.74 3.68
4145 4288 4.864704 TTTTTGGTGGGCTAGCTAAAAG 57.135 40.909 15.72 0.00 36.86 2.27
4170 4314 6.264970 GGGTTAATTAACAACCACACTACCAA 59.735 38.462 25.59 0.00 46.10 3.67
4262 4406 2.949451 ATACGAGCTCAAGGACTGTG 57.051 50.000 15.40 0.00 0.00 3.66
4263 4407 5.401531 TTTTATACGAGCTCAAGGACTGT 57.598 39.130 15.40 3.93 0.00 3.55
4287 4431 7.531857 TTGGGCTTACATTTTGAGATAAACA 57.468 32.000 0.00 0.00 0.00 2.83
4440 4584 4.690122 AGCGTTTTTGACACTACACTAGT 58.310 39.130 0.00 0.00 40.28 2.57
4441 4585 4.982916 AGAGCGTTTTTGACACTACACTAG 59.017 41.667 0.00 0.00 0.00 2.57
4442 4586 4.940463 AGAGCGTTTTTGACACTACACTA 58.060 39.130 0.00 0.00 0.00 2.74
4443 4587 3.793559 AGAGCGTTTTTGACACTACACT 58.206 40.909 0.00 0.00 0.00 3.55
4444 4588 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
4445 4589 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
4448 4592 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
4460 4604 5.721960 TCCCTCTGTCCCATAATATAAGAGC 59.278 44.000 0.00 0.00 0.00 4.09
4598 4897 3.057734 AGAAAGTACCGAAGCTTTGTCG 58.942 45.455 12.77 6.13 35.35 4.35
4643 4942 7.274250 CGTAGTTTTTGTCGTAGCCTACTTAAT 59.726 37.037 0.00 0.00 0.00 1.40
4698 4997 7.341256 TGAACCTCAAAACGGTATCTAGTCTAT 59.659 37.037 0.00 0.00 33.53 1.98
4762 5061 3.000727 GTCAACCACTAAACAGGGATCG 58.999 50.000 0.00 0.00 0.00 3.69
4806 5105 5.914898 ACCCATTACTTCAATAACAAGGC 57.085 39.130 0.00 0.00 0.00 4.35
4835 5134 7.557719 AGTTGGTTGATTAGTTGATCCCATAAG 59.442 37.037 0.00 0.00 0.00 1.73
5225 5543 6.690530 TGCTTATTTCAGCAGCATTTAAGTT 58.309 32.000 0.00 0.00 45.14 2.66
5339 5657 2.316108 TGCTAGACTGTGTTGACCTCA 58.684 47.619 0.00 0.00 0.00 3.86
5390 5731 8.241367 ACAAAAACAACAAACTAGTCCTGTAAG 58.759 33.333 10.17 8.94 0.00 2.34
5515 6010 8.969260 TGATATTGAACTCAGCATCTGTAATT 57.031 30.769 0.00 0.00 32.61 1.40
5825 6320 4.434857 GCAAAGACAACAATACGAGAGAGC 60.435 45.833 0.00 0.00 0.00 4.09
6094 6600 2.575805 AGAGCTCTTTGTGGAAAGGG 57.424 50.000 11.45 0.00 41.98 3.95
6259 6765 1.671054 CTTGTGCCCGTTGGTCGAT 60.671 57.895 0.00 0.00 42.86 3.59
6305 6811 3.053455 GTTTAATCGGAGCAGATCGGAG 58.947 50.000 2.16 0.00 40.24 4.63
6306 6812 2.693591 AGTTTAATCGGAGCAGATCGGA 59.306 45.455 0.00 0.00 41.05 4.55
6309 6815 5.292765 TCATCAGTTTAATCGGAGCAGATC 58.707 41.667 0.00 0.00 0.00 2.75
6310 6816 5.282055 TCATCAGTTTAATCGGAGCAGAT 57.718 39.130 0.00 0.00 0.00 2.90
6311 6817 4.736126 TCATCAGTTTAATCGGAGCAGA 57.264 40.909 0.00 0.00 0.00 4.26
6312 6818 5.998454 AATCATCAGTTTAATCGGAGCAG 57.002 39.130 0.00 0.00 0.00 4.24
6313 6819 7.201696 GGTTAAATCATCAGTTTAATCGGAGCA 60.202 37.037 0.00 0.00 34.60 4.26
6314 6820 7.012421 AGGTTAAATCATCAGTTTAATCGGAGC 59.988 37.037 0.00 0.00 37.27 4.70
6322 6862 7.888021 ACATGGACAGGTTAAATCATCAGTTTA 59.112 33.333 0.00 0.00 0.00 2.01
6413 6967 3.596066 CTATGATCCCAGGCCGGCG 62.596 68.421 22.54 7.47 0.00 6.46
6432 6986 1.974957 TGTCCGGTTCATCTCTTCCAA 59.025 47.619 0.00 0.00 0.00 3.53
6558 7118 0.602562 CTCCCGCCTCATTTTTGCAA 59.397 50.000 0.00 0.00 0.00 4.08
6565 7125 0.692419 ACTCATCCTCCCGCCTCATT 60.692 55.000 0.00 0.00 0.00 2.57
6572 7132 1.548128 CCTACCCTACTCATCCTCCCG 60.548 61.905 0.00 0.00 0.00 5.14
6584 7144 3.078612 GGTCCCAATCCTATCCTACCCTA 59.921 52.174 0.00 0.00 0.00 3.53
6600 7160 3.177884 ACTGCTTGCTGGGTCCCA 61.178 61.111 11.11 11.11 0.00 4.37
6603 7163 2.113986 ACCACTGCTTGCTGGGTC 59.886 61.111 5.98 0.00 0.00 4.46
6604 7164 2.203394 CACCACTGCTTGCTGGGT 60.203 61.111 5.98 6.41 0.00 4.51
6606 7166 1.970114 CTCCACCACTGCTTGCTGG 60.970 63.158 4.64 2.37 0.00 4.85
6607 7167 2.623915 GCTCCACCACTGCTTGCTG 61.624 63.158 0.00 0.00 0.00 4.41
6608 7168 2.282040 GCTCCACCACTGCTTGCT 60.282 61.111 0.00 0.00 0.00 3.91
6609 7169 2.195567 TTGCTCCACCACTGCTTGC 61.196 57.895 0.00 0.00 0.00 4.01
6610 7170 1.656441 GTTGCTCCACCACTGCTTG 59.344 57.895 0.00 0.00 0.00 4.01
6611 7171 1.893808 CGTTGCTCCACCACTGCTT 60.894 57.895 0.00 0.00 0.00 3.91
6757 7351 2.685829 CCTTTGCCACGCACGCATA 61.686 57.895 0.00 0.00 38.71 3.14
6758 7352 4.041917 CCTTTGCCACGCACGCAT 62.042 61.111 0.00 0.00 38.71 4.73
6858 7467 1.081376 GAGACGCCGACCATATCCG 60.081 63.158 0.00 0.00 0.00 4.18
6859 7468 0.039074 CTGAGACGCCGACCATATCC 60.039 60.000 0.00 0.00 0.00 2.59
6860 7469 0.669077 ACTGAGACGCCGACCATATC 59.331 55.000 0.00 0.00 0.00 1.63
6861 7470 1.112113 AACTGAGACGCCGACCATAT 58.888 50.000 0.00 0.00 0.00 1.78
6886 7495 2.232452 CTGAGCTCCGGAAGAGAAGAAA 59.768 50.000 12.15 0.00 46.50 2.52
6887 7496 1.821753 CTGAGCTCCGGAAGAGAAGAA 59.178 52.381 12.15 0.00 46.50 2.52
6888 7497 1.468985 CTGAGCTCCGGAAGAGAAGA 58.531 55.000 12.15 0.00 46.50 2.87
6889 7498 0.459489 CCTGAGCTCCGGAAGAGAAG 59.541 60.000 18.78 1.57 46.50 2.85
6890 7499 1.608717 GCCTGAGCTCCGGAAGAGAA 61.609 60.000 26.71 0.00 46.50 2.87
6891 7500 2.055042 GCCTGAGCTCCGGAAGAGA 61.055 63.158 26.71 0.00 46.50 3.10
6892 7501 2.498726 GCCTGAGCTCCGGAAGAG 59.501 66.667 26.71 8.85 46.29 2.85
6968 7602 3.579534 TGACGGGTCTAGCTAGAGATT 57.420 47.619 23.87 8.60 32.01 2.40
6969 7603 3.579534 TTGACGGGTCTAGCTAGAGAT 57.420 47.619 23.87 9.46 32.01 2.75
7035 7772 0.392998 AGCTTACGTTGCATGAGGGG 60.393 55.000 14.14 0.00 0.00 4.79
7047 7793 3.330853 GGCGCGATGGAGCTTACG 61.331 66.667 12.10 0.00 39.15 3.18
7049 7795 4.235762 GGGGCGCGATGGAGCTTA 62.236 66.667 12.10 0.00 39.15 3.09
7072 7818 3.945285 TCCAAAGCGAATGGAGATTAACC 59.055 43.478 4.32 0.00 41.98 2.85
7083 7829 2.440409 ACTGCAGATTCCAAAGCGAAT 58.560 42.857 23.35 0.00 35.14 3.34
7087 7833 2.484264 ACGTTACTGCAGATTCCAAAGC 59.516 45.455 23.35 0.00 0.00 3.51
7088 7834 4.213270 TGAACGTTACTGCAGATTCCAAAG 59.787 41.667 23.35 10.24 0.00 2.77
7089 7835 4.024387 GTGAACGTTACTGCAGATTCCAAA 60.024 41.667 23.35 1.65 0.00 3.28
7092 7838 2.415512 GGTGAACGTTACTGCAGATTCC 59.584 50.000 23.35 4.05 0.00 3.01
7093 7839 2.092211 CGGTGAACGTTACTGCAGATTC 59.908 50.000 23.35 14.95 37.93 2.52
7094 7840 2.066262 CGGTGAACGTTACTGCAGATT 58.934 47.619 23.35 0.27 37.93 2.40
7095 7841 1.710013 CGGTGAACGTTACTGCAGAT 58.290 50.000 23.35 7.41 37.93 2.90
7097 7843 1.491563 GCGGTGAACGTTACTGCAG 59.508 57.895 24.39 13.48 46.92 4.41
7098 7844 3.632700 GCGGTGAACGTTACTGCA 58.367 55.556 24.39 9.31 46.92 4.41
7099 7845 2.468532 CGCGGTGAACGTTACTGC 59.531 61.111 21.68 21.68 46.52 4.40
7100 7846 1.216941 AACCGCGGTGAACGTTACTG 61.217 55.000 34.95 6.57 46.52 2.74
7101 7847 0.530431 AAACCGCGGTGAACGTTACT 60.530 50.000 34.95 10.02 46.52 2.24
7105 7851 2.202905 TCAAACCGCGGTGAACGT 60.203 55.556 34.95 13.67 46.52 3.99
7107 7853 2.613506 CCCTCAAACCGCGGTGAAC 61.614 63.158 34.95 0.00 0.00 3.18
7108 7854 2.281208 CCCTCAAACCGCGGTGAA 60.281 61.111 34.95 19.12 0.00 3.18
7109 7855 4.323477 CCCCTCAAACCGCGGTGA 62.323 66.667 34.95 24.52 0.00 4.02
7110 7856 3.622060 ATCCCCTCAAACCGCGGTG 62.622 63.158 34.95 21.29 0.00 4.94
7111 7857 2.814913 GAATCCCCTCAAACCGCGGT 62.815 60.000 28.70 28.70 0.00 5.68
7112 7858 2.045340 AATCCCCTCAAACCGCGG 60.045 61.111 26.86 26.86 0.00 6.46
7113 7859 0.958382 TTGAATCCCCTCAAACCGCG 60.958 55.000 0.00 0.00 32.39 6.46
7114 7860 0.811281 CTTGAATCCCCTCAAACCGC 59.189 55.000 0.00 0.00 34.96 5.68
7115 7861 1.463674 CCTTGAATCCCCTCAAACCG 58.536 55.000 0.00 0.00 34.96 4.44
7116 7862 1.357761 TCCCTTGAATCCCCTCAAACC 59.642 52.381 0.00 0.00 34.96 3.27
7117 7863 2.899303 TCCCTTGAATCCCCTCAAAC 57.101 50.000 0.00 0.00 34.96 2.93
7118 7864 2.042979 CCTTCCCTTGAATCCCCTCAAA 59.957 50.000 0.00 0.00 34.96 2.69
7119 7865 1.640670 CCTTCCCTTGAATCCCCTCAA 59.359 52.381 0.00 0.00 34.22 3.02
7120 7866 1.298953 CCTTCCCTTGAATCCCCTCA 58.701 55.000 0.00 0.00 0.00 3.86
7121 7867 0.106469 GCCTTCCCTTGAATCCCCTC 60.106 60.000 0.00 0.00 0.00 4.30
7122 7868 0.850883 TGCCTTCCCTTGAATCCCCT 60.851 55.000 0.00 0.00 0.00 4.79
7123 7869 0.041090 TTGCCTTCCCTTGAATCCCC 59.959 55.000 0.00 0.00 0.00 4.81
7124 7870 1.937191 TTTGCCTTCCCTTGAATCCC 58.063 50.000 0.00 0.00 0.00 3.85
7125 7871 5.664457 CTTAATTTGCCTTCCCTTGAATCC 58.336 41.667 0.00 0.00 0.00 3.01
7126 7872 5.105187 AGCTTAATTTGCCTTCCCTTGAATC 60.105 40.000 0.00 0.00 0.00 2.52
7127 7873 4.779489 AGCTTAATTTGCCTTCCCTTGAAT 59.221 37.500 0.00 0.00 0.00 2.57
7128 7874 4.021192 CAGCTTAATTTGCCTTCCCTTGAA 60.021 41.667 0.00 0.00 0.00 2.69
7129 7875 3.511146 CAGCTTAATTTGCCTTCCCTTGA 59.489 43.478 0.00 0.00 0.00 3.02
7130 7876 3.368739 CCAGCTTAATTTGCCTTCCCTTG 60.369 47.826 0.00 0.00 0.00 3.61
7131 7877 2.833943 CCAGCTTAATTTGCCTTCCCTT 59.166 45.455 0.00 0.00 0.00 3.95
7132 7878 2.225369 ACCAGCTTAATTTGCCTTCCCT 60.225 45.455 0.00 0.00 0.00 4.20
7133 7879 2.166459 GACCAGCTTAATTTGCCTTCCC 59.834 50.000 0.00 0.00 0.00 3.97
7134 7880 3.092301 AGACCAGCTTAATTTGCCTTCC 58.908 45.455 0.00 0.00 0.00 3.46
7135 7881 4.013050 AGAGACCAGCTTAATTTGCCTTC 58.987 43.478 0.00 0.00 0.00 3.46
7136 7882 3.760684 CAGAGACCAGCTTAATTTGCCTT 59.239 43.478 0.00 0.00 0.00 4.35
7137 7883 3.009473 TCAGAGACCAGCTTAATTTGCCT 59.991 43.478 0.00 0.00 0.00 4.75
7138 7884 3.127721 GTCAGAGACCAGCTTAATTTGCC 59.872 47.826 0.00 0.00 0.00 4.52
7139 7885 3.181516 CGTCAGAGACCAGCTTAATTTGC 60.182 47.826 0.00 0.00 0.00 3.68
7140 7886 4.245660 TCGTCAGAGACCAGCTTAATTTG 58.754 43.478 0.00 0.00 0.00 2.32
7141 7887 4.537135 TCGTCAGAGACCAGCTTAATTT 57.463 40.909 0.00 0.00 0.00 1.82
7142 7888 4.537135 TTCGTCAGAGACCAGCTTAATT 57.463 40.909 0.00 0.00 0.00 1.40
7143 7889 4.537135 TTTCGTCAGAGACCAGCTTAAT 57.463 40.909 0.00 0.00 0.00 1.40
7144 7890 4.537135 ATTTCGTCAGAGACCAGCTTAA 57.463 40.909 0.00 0.00 0.00 1.85
7145 7891 5.654603 TTATTTCGTCAGAGACCAGCTTA 57.345 39.130 0.00 0.00 0.00 3.09
7146 7892 4.537135 TTATTTCGTCAGAGACCAGCTT 57.463 40.909 0.00 0.00 0.00 3.74
7147 7893 4.160439 TGATTATTTCGTCAGAGACCAGCT 59.840 41.667 0.00 0.00 0.00 4.24
7148 7894 4.268884 GTGATTATTTCGTCAGAGACCAGC 59.731 45.833 0.00 0.00 0.00 4.85
7149 7895 4.806247 GGTGATTATTTCGTCAGAGACCAG 59.194 45.833 0.00 0.00 0.00 4.00
7150 7896 4.382685 GGGTGATTATTTCGTCAGAGACCA 60.383 45.833 0.00 0.00 0.00 4.02
7151 7897 4.120589 GGGTGATTATTTCGTCAGAGACC 58.879 47.826 0.00 0.00 0.00 3.85
7152 7898 3.797256 CGGGTGATTATTTCGTCAGAGAC 59.203 47.826 0.00 0.00 0.00 3.36
7153 7899 3.697542 TCGGGTGATTATTTCGTCAGAGA 59.302 43.478 0.00 0.00 0.00 3.10
7154 7900 3.797256 GTCGGGTGATTATTTCGTCAGAG 59.203 47.826 0.00 0.00 0.00 3.35
7155 7901 3.193903 TGTCGGGTGATTATTTCGTCAGA 59.806 43.478 0.00 0.00 0.00 3.27
7156 7902 3.517602 TGTCGGGTGATTATTTCGTCAG 58.482 45.455 0.00 0.00 0.00 3.51
7157 7903 3.596310 TGTCGGGTGATTATTTCGTCA 57.404 42.857 0.00 0.00 0.00 4.35
7158 7904 4.260620 CCATTGTCGGGTGATTATTTCGTC 60.261 45.833 0.00 0.00 0.00 4.20
7159 7905 3.625764 CCATTGTCGGGTGATTATTTCGT 59.374 43.478 0.00 0.00 0.00 3.85
7160 7906 3.003275 CCCATTGTCGGGTGATTATTTCG 59.997 47.826 0.00 0.00 41.83 3.46
7161 7907 4.568152 CCCATTGTCGGGTGATTATTTC 57.432 45.455 0.00 0.00 41.83 2.17
7174 7920 3.818787 CAGCAGGCGCCCATTGTC 61.819 66.667 26.15 11.30 39.83 3.18
7181 7927 2.388890 ATATCAGTCCAGCAGGCGCC 62.389 60.000 21.89 21.89 39.83 6.53
7182 7928 0.948141 GATATCAGTCCAGCAGGCGC 60.948 60.000 0.00 0.00 38.99 6.53
7183 7929 0.390492 TGATATCAGTCCAGCAGGCG 59.610 55.000 0.00 0.00 33.74 5.52
7184 7930 1.690893 TCTGATATCAGTCCAGCAGGC 59.309 52.381 27.80 0.00 44.12 4.85
7185 7931 4.620589 AATCTGATATCAGTCCAGCAGG 57.379 45.455 27.80 4.75 44.12 4.85
7186 7932 4.685165 CGAAATCTGATATCAGTCCAGCAG 59.315 45.833 27.80 13.35 44.12 4.24
7187 7933 4.100035 ACGAAATCTGATATCAGTCCAGCA 59.900 41.667 27.80 11.57 44.12 4.41
7188 7934 4.626042 ACGAAATCTGATATCAGTCCAGC 58.374 43.478 27.80 15.51 44.12 4.85
7189 7935 7.278646 TGAAAACGAAATCTGATATCAGTCCAG 59.721 37.037 27.80 19.16 44.12 3.86
7190 7936 7.102993 TGAAAACGAAATCTGATATCAGTCCA 58.897 34.615 27.80 12.93 44.12 4.02
7191 7937 7.539712 TGAAAACGAAATCTGATATCAGTCC 57.460 36.000 27.80 15.83 44.12 3.85
7192 7938 9.039870 AGATGAAAACGAAATCTGATATCAGTC 57.960 33.333 27.80 18.69 44.12 3.51
7193 7939 8.954950 AGATGAAAACGAAATCTGATATCAGT 57.045 30.769 27.80 15.17 44.12 3.41
7194 7940 8.494347 GGAGATGAAAACGAAATCTGATATCAG 58.506 37.037 24.32 24.32 45.08 2.90
7195 7941 7.442364 GGGAGATGAAAACGAAATCTGATATCA 59.558 37.037 5.07 5.07 30.83 2.15
7196 7942 7.095017 GGGGAGATGAAAACGAAATCTGATATC 60.095 40.741 0.00 0.00 30.83 1.63
7197 7943 6.712547 GGGGAGATGAAAACGAAATCTGATAT 59.287 38.462 0.00 0.00 30.83 1.63
7198 7944 6.055588 GGGGAGATGAAAACGAAATCTGATA 58.944 40.000 0.00 0.00 30.83 2.15
7199 7945 4.884164 GGGGAGATGAAAACGAAATCTGAT 59.116 41.667 0.00 0.00 30.83 2.90
7200 7946 4.261801 GGGGAGATGAAAACGAAATCTGA 58.738 43.478 0.00 0.00 30.83 3.27
7201 7947 3.378427 GGGGGAGATGAAAACGAAATCTG 59.622 47.826 0.00 0.00 30.83 2.90
7202 7948 3.267031 AGGGGGAGATGAAAACGAAATCT 59.733 43.478 0.00 0.00 33.36 2.40
7203 7949 3.621558 AGGGGGAGATGAAAACGAAATC 58.378 45.455 0.00 0.00 0.00 2.17
7204 7950 3.739401 AGGGGGAGATGAAAACGAAAT 57.261 42.857 0.00 0.00 0.00 2.17
7205 7951 4.855298 ATAGGGGGAGATGAAAACGAAA 57.145 40.909 0.00 0.00 0.00 3.46
7206 7952 4.855298 AATAGGGGGAGATGAAAACGAA 57.145 40.909 0.00 0.00 0.00 3.85
7207 7953 4.855298 AAATAGGGGGAGATGAAAACGA 57.145 40.909 0.00 0.00 0.00 3.85
7208 7954 6.120220 AGTTAAATAGGGGGAGATGAAAACG 58.880 40.000 0.00 0.00 0.00 3.60
7209 7955 7.956328 AAGTTAAATAGGGGGAGATGAAAAC 57.044 36.000 0.00 0.00 0.00 2.43
7212 7958 9.862149 GAATAAAGTTAAATAGGGGGAGATGAA 57.138 33.333 0.00 0.00 0.00 2.57
7213 7959 9.009675 TGAATAAAGTTAAATAGGGGGAGATGA 57.990 33.333 0.00 0.00 0.00 2.92
7214 7960 9.067986 GTGAATAAAGTTAAATAGGGGGAGATG 57.932 37.037 0.00 0.00 0.00 2.90
7215 7961 8.787818 TGTGAATAAAGTTAAATAGGGGGAGAT 58.212 33.333 0.00 0.00 0.00 2.75
7216 7962 8.165267 TGTGAATAAAGTTAAATAGGGGGAGA 57.835 34.615 0.00 0.00 0.00 3.71
7217 7963 8.817092 TTGTGAATAAAGTTAAATAGGGGGAG 57.183 34.615 0.00 0.00 0.00 4.30
7218 7964 9.250246 CTTTGTGAATAAAGTTAAATAGGGGGA 57.750 33.333 0.00 0.00 33.91 4.81
7219 7965 7.979537 GCTTTGTGAATAAAGTTAAATAGGGGG 59.020 37.037 0.00 0.00 39.33 5.40
7220 7966 7.979537 GGCTTTGTGAATAAAGTTAAATAGGGG 59.020 37.037 0.00 0.00 39.33 4.79
7221 7967 7.979537 GGGCTTTGTGAATAAAGTTAAATAGGG 59.020 37.037 0.00 0.00 39.33 3.53
7222 7968 7.700656 CGGGCTTTGTGAATAAAGTTAAATAGG 59.299 37.037 0.00 0.00 39.33 2.57
7223 7969 7.700656 CCGGGCTTTGTGAATAAAGTTAAATAG 59.299 37.037 0.00 0.00 39.33 1.73
7224 7970 7.540299 CCGGGCTTTGTGAATAAAGTTAAATA 58.460 34.615 0.00 0.00 39.33 1.40
7225 7971 6.394809 CCGGGCTTTGTGAATAAAGTTAAAT 58.605 36.000 0.00 0.00 39.33 1.40
7226 7972 5.774630 CCGGGCTTTGTGAATAAAGTTAAA 58.225 37.500 0.00 0.00 39.33 1.52
7227 7973 4.321378 GCCGGGCTTTGTGAATAAAGTTAA 60.321 41.667 12.87 0.00 39.33 2.01
7228 7974 3.191791 GCCGGGCTTTGTGAATAAAGTTA 59.808 43.478 12.87 0.00 39.33 2.24
7229 7975 2.029380 GCCGGGCTTTGTGAATAAAGTT 60.029 45.455 12.87 0.00 39.33 2.66
7230 7976 1.544246 GCCGGGCTTTGTGAATAAAGT 59.456 47.619 12.87 0.00 39.33 2.66
7231 7977 1.543802 TGCCGGGCTTTGTGAATAAAG 59.456 47.619 21.46 0.00 39.95 1.85
7232 7978 1.621992 TGCCGGGCTTTGTGAATAAA 58.378 45.000 21.46 0.00 0.00 1.40
7233 7979 1.271102 GTTGCCGGGCTTTGTGAATAA 59.729 47.619 21.46 0.00 0.00 1.40
7234 7980 0.885196 GTTGCCGGGCTTTGTGAATA 59.115 50.000 21.46 0.00 0.00 1.75
7235 7981 1.665442 GTTGCCGGGCTTTGTGAAT 59.335 52.632 21.46 0.00 0.00 2.57
7236 7982 2.840066 CGTTGCCGGGCTTTGTGAA 61.840 57.895 21.46 1.36 0.00 3.18
7237 7983 3.283684 CGTTGCCGGGCTTTGTGA 61.284 61.111 21.46 0.00 0.00 3.58
7249 7995 3.595108 GAACTGCGAAGGCCGTTGC 62.595 63.158 22.76 22.76 45.03 4.17
7250 7996 2.250939 TGAACTGCGAAGGCCGTTG 61.251 57.895 0.75 0.75 45.03 4.10
7252 7998 2.665185 GTGAACTGCGAAGGCCGT 60.665 61.111 0.00 0.00 38.32 5.68
7253 7999 3.423154 GGTGAACTGCGAAGGCCG 61.423 66.667 0.00 0.00 38.85 6.13
7254 8000 2.281484 TGGTGAACTGCGAAGGCC 60.281 61.111 0.00 0.00 38.85 5.19
7255 8001 1.891919 TGTGGTGAACTGCGAAGGC 60.892 57.895 0.00 0.00 40.52 4.35
7256 8002 1.507141 GGTGTGGTGAACTGCGAAGG 61.507 60.000 0.00 0.00 0.00 3.46
7257 8003 1.507141 GGGTGTGGTGAACTGCGAAG 61.507 60.000 0.00 0.00 0.00 3.79
7258 8004 1.525077 GGGTGTGGTGAACTGCGAA 60.525 57.895 0.00 0.00 0.00 4.70
7259 8005 2.110213 GGGTGTGGTGAACTGCGA 59.890 61.111 0.00 0.00 0.00 5.10
7260 8006 2.978010 GGGGTGTGGTGAACTGCG 60.978 66.667 0.00 0.00 0.00 5.18
7261 8007 1.600916 GAGGGGTGTGGTGAACTGC 60.601 63.158 0.00 0.00 0.00 4.40
7262 8008 0.474184 AAGAGGGGTGTGGTGAACTG 59.526 55.000 0.00 0.00 0.00 3.16
7263 8009 0.765510 GAAGAGGGGTGTGGTGAACT 59.234 55.000 0.00 0.00 0.00 3.01
7264 8010 0.765510 AGAAGAGGGGTGTGGTGAAC 59.234 55.000 0.00 0.00 0.00 3.18
7265 8011 1.420138 GAAGAAGAGGGGTGTGGTGAA 59.580 52.381 0.00 0.00 0.00 3.18
7266 8012 1.056660 GAAGAAGAGGGGTGTGGTGA 58.943 55.000 0.00 0.00 0.00 4.02
7267 8013 1.059913 AGAAGAAGAGGGGTGTGGTG 58.940 55.000 0.00 0.00 0.00 4.17
7268 8014 1.700186 GAAGAAGAAGAGGGGTGTGGT 59.300 52.381 0.00 0.00 0.00 4.16
7269 8015 1.981495 AGAAGAAGAAGAGGGGTGTGG 59.019 52.381 0.00 0.00 0.00 4.17
7270 8016 3.778954 AAGAAGAAGAAGAGGGGTGTG 57.221 47.619 0.00 0.00 0.00 3.82
7271 8017 3.716872 TGAAAGAAGAAGAAGAGGGGTGT 59.283 43.478 0.00 0.00 0.00 4.16
7272 8018 4.357918 TGAAAGAAGAAGAAGAGGGGTG 57.642 45.455 0.00 0.00 0.00 4.61
7273 8019 5.133941 GTTTGAAAGAAGAAGAAGAGGGGT 58.866 41.667 0.00 0.00 0.00 4.95
7274 8020 4.520874 GGTTTGAAAGAAGAAGAAGAGGGG 59.479 45.833 0.00 0.00 0.00 4.79
7275 8021 5.380900 AGGTTTGAAAGAAGAAGAAGAGGG 58.619 41.667 0.00 0.00 0.00 4.30
7276 8022 6.148645 GCTAGGTTTGAAAGAAGAAGAAGAGG 59.851 42.308 0.00 0.00 0.00 3.69
7277 8023 6.148645 GGCTAGGTTTGAAAGAAGAAGAAGAG 59.851 42.308 0.00 0.00 0.00 2.85
7291 8037 0.766131 TTTGGGACGGCTAGGTTTGA 59.234 50.000 0.00 0.00 0.00 2.69
7307 8053 4.500837 CAGACCGAATAGAGACATCGTTTG 59.499 45.833 0.00 0.00 34.90 2.93
7316 8062 4.099573 GGGTTGATTCAGACCGAATAGAGA 59.900 45.833 10.12 0.00 44.65 3.10
7326 8072 3.012518 CAGTGGATGGGTTGATTCAGAC 58.987 50.000 0.00 0.00 0.00 3.51
7500 8248 1.524863 CGAGTGAACTCCTCCACCGT 61.525 60.000 4.90 0.00 39.79 4.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.