Multiple sequence alignment - TraesCS6B01G188000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G188000 chr6B 100.000 2899 0 0 524 3422 216468144 216471042 0.000000e+00 5354.0
1 TraesCS6B01G188000 chr6B 100.000 185 0 0 1 185 216467621 216467805 3.270000e-90 342.0
2 TraesCS6B01G188000 chr6A 92.892 2856 129 38 566 3380 162033443 162036265 0.000000e+00 4082.0
3 TraesCS6B01G188000 chr6D 95.616 2395 60 16 524 2897 122730071 122732441 0.000000e+00 3799.0
4 TraesCS6B01G188000 chr6D 82.963 405 42 14 3031 3414 122733451 122733849 1.180000e-89 340.0
5 TraesCS6B01G188000 chr6D 92.000 100 3 4 1 97 197879377 197879280 5.960000e-28 135.0
6 TraesCS6B01G188000 chr6D 88.350 103 8 4 1 100 270717639 270717538 1.670000e-23 121.0
7 TraesCS6B01G188000 chrUn 100.000 419 0 0 1355 1773 476947789 476948207 0.000000e+00 774.0
8 TraesCS6B01G188000 chr4B 90.625 96 5 3 1 94 277534600 277534693 1.290000e-24 124.0
9 TraesCS6B01G188000 chr2D 89.899 99 7 2 1 97 158104755 158104658 1.290000e-24 124.0
10 TraesCS6B01G188000 chr2D 88.889 99 7 3 2 98 223964111 223964207 6.000000e-23 119.0
11 TraesCS6B01G188000 chr1D 89.899 99 7 2 1 97 262868765 262868862 1.290000e-24 124.0
12 TraesCS6B01G188000 chr1D 75.102 245 51 7 2055 2294 37437993 37437754 4.670000e-19 106.0
13 TraesCS6B01G188000 chr5D 89.000 100 8 3 1 98 206828838 206828936 1.670000e-23 121.0
14 TraesCS6B01G188000 chr4A 89.000 100 8 2 1 98 312685602 312685504 1.670000e-23 121.0
15 TraesCS6B01G188000 chr7A 88.889 99 8 2 1 97 246704101 246704198 6.000000e-23 119.0
16 TraesCS6B01G188000 chr1B 75.102 245 51 7 2055 2294 57023673 57023434 4.670000e-19 106.0
17 TraesCS6B01G188000 chr1A 93.750 48 3 0 2055 2102 36620554 36620507 4.740000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G188000 chr6B 216467621 216471042 3421 False 2848.0 5354 100.0000 1 3422 2 chr6B.!!$F1 3421
1 TraesCS6B01G188000 chr6A 162033443 162036265 2822 False 4082.0 4082 92.8920 566 3380 1 chr6A.!!$F1 2814
2 TraesCS6B01G188000 chr6D 122730071 122733849 3778 False 2069.5 3799 89.2895 524 3414 2 chr6D.!!$F1 2890

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
80 81 0.035458 ACTTTCTCTTGGGTCTGCGG 59.965 55.0 0.0 0.0 0.00 5.69 F
182 183 0.035458 CTTCCTGTCACACCCCTGAC 59.965 60.0 0.0 0.0 40.98 3.51 F
801 812 0.323957 ACATTGCAGAGCAGAGCAGA 59.676 50.0 0.0 0.0 42.39 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1353 1387 0.454957 CGTAGTTCACCCCGTACGTG 60.455 60.000 15.21 6.26 34.84 4.49 R
1896 1930 1.065928 CTCCGGGTCGCTCATGTAC 59.934 63.158 0.00 0.00 0.00 2.90 R
2475 2509 2.067013 GGCGAGTTGTGGTCTTCTAAC 58.933 52.381 0.00 0.00 0.00 2.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.036026 CGTGAGGGTGACGAATCAG 57.964 57.895 0.00 0.00 39.21 2.90
19 20 0.243907 CGTGAGGGTGACGAATCAGT 59.756 55.000 0.00 0.00 39.21 3.41
20 21 1.336887 CGTGAGGGTGACGAATCAGTT 60.337 52.381 0.00 0.00 39.21 3.16
21 22 2.069273 GTGAGGGTGACGAATCAGTTG 58.931 52.381 0.00 0.00 34.75 3.16
22 23 1.001974 TGAGGGTGACGAATCAGTTGG 59.998 52.381 0.00 0.00 34.75 3.77
23 24 0.321653 AGGGTGACGAATCAGTTGGC 60.322 55.000 0.00 0.00 34.75 4.52
24 25 0.321653 GGGTGACGAATCAGTTGGCT 60.322 55.000 0.00 0.00 34.75 4.75
25 26 0.798776 GGTGACGAATCAGTTGGCTG 59.201 55.000 0.00 0.00 43.87 4.85
26 27 0.798776 GTGACGAATCAGTTGGCTGG 59.201 55.000 0.00 0.00 42.78 4.85
27 28 0.684535 TGACGAATCAGTTGGCTGGA 59.315 50.000 0.00 0.00 42.78 3.86
28 29 1.338105 TGACGAATCAGTTGGCTGGAG 60.338 52.381 0.00 0.00 42.78 3.86
29 30 0.976641 ACGAATCAGTTGGCTGGAGA 59.023 50.000 0.00 0.00 42.78 3.71
30 31 1.066573 ACGAATCAGTTGGCTGGAGAG 60.067 52.381 0.00 0.00 42.78 3.20
31 32 1.741732 CGAATCAGTTGGCTGGAGAGG 60.742 57.143 0.00 0.00 42.78 3.69
32 33 1.280421 GAATCAGTTGGCTGGAGAGGT 59.720 52.381 0.00 0.00 42.78 3.85
33 34 1.366319 ATCAGTTGGCTGGAGAGGTT 58.634 50.000 0.00 0.00 42.78 3.50
34 35 0.397941 TCAGTTGGCTGGAGAGGTTG 59.602 55.000 0.00 0.00 42.78 3.77
35 36 0.397941 CAGTTGGCTGGAGAGGTTGA 59.602 55.000 0.00 0.00 39.01 3.18
36 37 0.689623 AGTTGGCTGGAGAGGTTGAG 59.310 55.000 0.00 0.00 0.00 3.02
37 38 0.398318 GTTGGCTGGAGAGGTTGAGT 59.602 55.000 0.00 0.00 0.00 3.41
38 39 1.140312 TTGGCTGGAGAGGTTGAGTT 58.860 50.000 0.00 0.00 0.00 3.01
39 40 0.687354 TGGCTGGAGAGGTTGAGTTC 59.313 55.000 0.00 0.00 0.00 3.01
40 41 0.980423 GGCTGGAGAGGTTGAGTTCT 59.020 55.000 0.00 0.00 0.00 3.01
41 42 1.349357 GGCTGGAGAGGTTGAGTTCTT 59.651 52.381 0.00 0.00 0.00 2.52
42 43 2.224646 GGCTGGAGAGGTTGAGTTCTTT 60.225 50.000 0.00 0.00 0.00 2.52
43 44 2.810852 GCTGGAGAGGTTGAGTTCTTTG 59.189 50.000 0.00 0.00 0.00 2.77
44 45 2.810852 CTGGAGAGGTTGAGTTCTTTGC 59.189 50.000 0.00 0.00 0.00 3.68
45 46 2.172505 TGGAGAGGTTGAGTTCTTTGCA 59.827 45.455 0.00 0.00 0.00 4.08
46 47 2.550180 GGAGAGGTTGAGTTCTTTGCAC 59.450 50.000 0.00 0.00 0.00 4.57
47 48 2.213499 AGAGGTTGAGTTCTTTGCACG 58.787 47.619 0.00 0.00 0.00 5.34
48 49 0.663153 AGGTTGAGTTCTTTGCACGC 59.337 50.000 0.00 0.00 0.00 5.34
49 50 0.317854 GGTTGAGTTCTTTGCACGCC 60.318 55.000 0.00 0.00 0.00 5.68
50 51 0.657368 GTTGAGTTCTTTGCACGCCG 60.657 55.000 0.00 0.00 0.00 6.46
51 52 2.127232 GAGTTCTTTGCACGCCGC 60.127 61.111 0.00 0.00 42.89 6.53
61 62 2.733218 CACGCCGCAGAGTTCGAA 60.733 61.111 0.00 0.00 0.00 3.71
62 63 2.733593 ACGCCGCAGAGTTCGAAC 60.734 61.111 20.71 20.71 0.00 3.95
63 64 2.430921 CGCCGCAGAGTTCGAACT 60.431 61.111 30.12 30.12 43.16 3.01
64 65 2.022129 CGCCGCAGAGTTCGAACTT 61.022 57.895 30.22 17.56 39.88 2.66
65 66 1.557443 CGCCGCAGAGTTCGAACTTT 61.557 55.000 30.22 22.82 39.88 2.66
66 67 0.164002 GCCGCAGAGTTCGAACTTTC 59.836 55.000 30.22 19.16 39.88 2.62
67 68 1.784525 CCGCAGAGTTCGAACTTTCT 58.215 50.000 30.22 21.02 39.88 2.52
68 69 1.721926 CCGCAGAGTTCGAACTTTCTC 59.278 52.381 30.22 18.11 39.88 2.87
69 70 2.608261 CCGCAGAGTTCGAACTTTCTCT 60.608 50.000 30.22 19.98 39.88 3.10
70 71 3.053455 CGCAGAGTTCGAACTTTCTCTT 58.947 45.455 30.22 7.98 39.88 2.85
71 72 3.121194 CGCAGAGTTCGAACTTTCTCTTG 60.121 47.826 30.22 20.41 39.88 3.02
72 73 3.185391 GCAGAGTTCGAACTTTCTCTTGG 59.815 47.826 30.22 13.53 39.88 3.61
73 74 3.743396 CAGAGTTCGAACTTTCTCTTGGG 59.257 47.826 30.22 8.72 39.88 4.12
74 75 3.388350 AGAGTTCGAACTTTCTCTTGGGT 59.612 43.478 30.22 5.11 39.88 4.51
75 76 3.729966 AGTTCGAACTTTCTCTTGGGTC 58.270 45.455 24.93 0.00 35.21 4.46
76 77 3.388350 AGTTCGAACTTTCTCTTGGGTCT 59.612 43.478 24.93 0.00 35.21 3.85
77 78 3.386768 TCGAACTTTCTCTTGGGTCTG 57.613 47.619 0.00 0.00 0.00 3.51
78 79 1.801178 CGAACTTTCTCTTGGGTCTGC 59.199 52.381 0.00 0.00 0.00 4.26
79 80 1.801178 GAACTTTCTCTTGGGTCTGCG 59.199 52.381 0.00 0.00 0.00 5.18
80 81 0.035458 ACTTTCTCTTGGGTCTGCGG 59.965 55.000 0.00 0.00 0.00 5.69
81 82 0.321671 CTTTCTCTTGGGTCTGCGGA 59.678 55.000 0.00 0.00 0.00 5.54
82 83 0.321671 TTTCTCTTGGGTCTGCGGAG 59.678 55.000 0.00 0.00 0.00 4.63
96 97 3.309582 GGAGCCCTGAATCCGACA 58.690 61.111 0.00 0.00 0.00 4.35
97 98 1.153349 GGAGCCCTGAATCCGACAC 60.153 63.158 0.00 0.00 0.00 3.67
98 99 1.519455 GAGCCCTGAATCCGACACG 60.519 63.158 0.00 0.00 0.00 4.49
109 110 4.988065 CGACACGGACCAAGATGT 57.012 55.556 0.00 0.00 0.00 3.06
110 111 2.445274 CGACACGGACCAAGATGTG 58.555 57.895 0.00 0.00 38.28 3.21
111 112 1.626654 CGACACGGACCAAGATGTGC 61.627 60.000 0.00 0.00 35.79 4.57
112 113 0.602638 GACACGGACCAAGATGTGCA 60.603 55.000 0.00 0.00 35.79 4.57
113 114 0.884704 ACACGGACCAAGATGTGCAC 60.885 55.000 10.75 10.75 35.79 4.57
114 115 1.667830 ACGGACCAAGATGTGCACG 60.668 57.895 13.13 0.00 0.00 5.34
115 116 1.667830 CGGACCAAGATGTGCACGT 60.668 57.895 12.38 12.38 0.00 4.49
116 117 1.626654 CGGACCAAGATGTGCACGTC 61.627 60.000 28.14 28.14 0.00 4.34
117 118 1.626654 GGACCAAGATGTGCACGTCG 61.627 60.000 28.60 19.04 36.99 5.12
118 119 0.666274 GACCAAGATGTGCACGTCGA 60.666 55.000 28.60 5.19 36.99 4.20
119 120 0.944311 ACCAAGATGTGCACGTCGAC 60.944 55.000 28.60 5.18 36.99 4.20
120 121 0.943835 CCAAGATGTGCACGTCGACA 60.944 55.000 28.60 4.09 36.99 4.35
121 122 0.436150 CAAGATGTGCACGTCGACAG 59.564 55.000 28.60 17.60 36.99 3.51
122 123 1.284982 AAGATGTGCACGTCGACAGC 61.285 55.000 28.60 19.69 36.99 4.40
123 124 2.730672 GATGTGCACGTCGACAGCC 61.731 63.158 22.57 15.65 0.00 4.85
124 125 4.961511 TGTGCACGTCGACAGCCC 62.962 66.667 22.47 14.52 0.00 5.19
127 128 4.796231 GCACGTCGACAGCCCGAT 62.796 66.667 17.16 0.00 40.91 4.18
128 129 2.579787 CACGTCGACAGCCCGATC 60.580 66.667 17.16 0.00 40.91 3.69
129 130 3.060000 ACGTCGACAGCCCGATCA 61.060 61.111 17.16 0.00 40.91 2.92
130 131 2.180769 CGTCGACAGCCCGATCAA 59.819 61.111 17.16 0.00 40.91 2.57
131 132 1.874019 CGTCGACAGCCCGATCAAG 60.874 63.158 17.16 0.00 40.91 3.02
132 133 1.215647 GTCGACAGCCCGATCAAGT 59.784 57.895 11.55 0.00 40.91 3.16
133 134 0.454600 GTCGACAGCCCGATCAAGTA 59.545 55.000 11.55 0.00 40.91 2.24
134 135 0.454600 TCGACAGCCCGATCAAGTAC 59.545 55.000 0.00 0.00 33.14 2.73
135 136 0.456221 CGACAGCCCGATCAAGTACT 59.544 55.000 0.00 0.00 0.00 2.73
136 137 1.534175 CGACAGCCCGATCAAGTACTC 60.534 57.143 0.00 0.00 0.00 2.59
137 138 0.456221 ACAGCCCGATCAAGTACTCG 59.544 55.000 0.00 0.00 34.73 4.18
138 139 0.738975 CAGCCCGATCAAGTACTCGA 59.261 55.000 0.00 0.00 37.05 4.04
139 140 0.739561 AGCCCGATCAAGTACTCGAC 59.260 55.000 0.00 0.00 37.05 4.20
140 141 0.739561 GCCCGATCAAGTACTCGACT 59.260 55.000 0.00 0.00 41.56 4.18
141 142 1.945394 GCCCGATCAAGTACTCGACTA 59.055 52.381 0.00 0.00 37.44 2.59
142 143 2.286891 GCCCGATCAAGTACTCGACTAC 60.287 54.545 0.00 0.00 37.44 2.73
143 144 2.941064 CCCGATCAAGTACTCGACTACA 59.059 50.000 0.00 0.00 37.44 2.74
144 145 3.002451 CCCGATCAAGTACTCGACTACAG 59.998 52.174 0.00 0.00 37.44 2.74
145 146 3.622163 CCGATCAAGTACTCGACTACAGT 59.378 47.826 0.00 0.00 37.44 3.55
146 147 4.260294 CCGATCAAGTACTCGACTACAGTC 60.260 50.000 0.00 0.00 37.44 3.51
155 156 2.251600 GACTACAGTCGTCACCGGT 58.748 57.895 0.00 0.00 35.12 5.28
156 157 0.167689 GACTACAGTCGTCACCGGTC 59.832 60.000 2.59 0.00 35.12 4.79
157 158 1.239968 ACTACAGTCGTCACCGGTCC 61.240 60.000 2.59 0.00 33.95 4.46
158 159 1.228215 TACAGTCGTCACCGGTCCA 60.228 57.895 2.59 0.00 33.95 4.02
159 160 1.518056 TACAGTCGTCACCGGTCCAC 61.518 60.000 2.59 3.11 33.95 4.02
160 161 3.667282 AGTCGTCACCGGTCCACG 61.667 66.667 23.87 23.87 43.80 4.94
171 172 3.212450 GGTCCACGAACTTCCTGTC 57.788 57.895 0.00 0.00 0.00 3.51
172 173 0.391597 GGTCCACGAACTTCCTGTCA 59.608 55.000 0.00 0.00 0.00 3.58
173 174 1.499049 GTCCACGAACTTCCTGTCAC 58.501 55.000 0.00 0.00 0.00 3.67
174 175 1.116308 TCCACGAACTTCCTGTCACA 58.884 50.000 0.00 0.00 0.00 3.58
175 176 1.202486 TCCACGAACTTCCTGTCACAC 60.202 52.381 0.00 0.00 0.00 3.82
176 177 1.217882 CACGAACTTCCTGTCACACC 58.782 55.000 0.00 0.00 0.00 4.16
177 178 0.106149 ACGAACTTCCTGTCACACCC 59.894 55.000 0.00 0.00 0.00 4.61
178 179 0.602905 CGAACTTCCTGTCACACCCC 60.603 60.000 0.00 0.00 0.00 4.95
179 180 0.765510 GAACTTCCTGTCACACCCCT 59.234 55.000 0.00 0.00 0.00 4.79
180 181 0.474184 AACTTCCTGTCACACCCCTG 59.526 55.000 0.00 0.00 0.00 4.45
181 182 0.399949 ACTTCCTGTCACACCCCTGA 60.400 55.000 0.00 0.00 0.00 3.86
182 183 0.035458 CTTCCTGTCACACCCCTGAC 59.965 60.000 0.00 0.00 40.98 3.51
183 184 1.754380 TTCCTGTCACACCCCTGACG 61.754 60.000 0.00 0.00 43.14 4.35
184 185 2.357517 CTGTCACACCCCTGACGC 60.358 66.667 0.00 0.00 43.14 5.19
563 564 5.409826 ACTCCTTTTTCGAGTGTGATCATTC 59.590 40.000 0.00 0.00 39.14 2.67
606 607 3.458118 TCCAAGTCCATAATACCCCACTG 59.542 47.826 0.00 0.00 0.00 3.66
671 677 8.508875 TCGTCTAAAATTTCCTTAAAGCGATTT 58.491 29.630 3.32 3.32 0.00 2.17
672 678 9.124807 CGTCTAAAATTTCCTTAAAGCGATTTT 57.875 29.630 3.03 0.00 0.00 1.82
699 705 1.917872 AATAAACTTTCGGCCCAGCA 58.082 45.000 0.00 0.00 0.00 4.41
700 706 1.917872 ATAAACTTTCGGCCCAGCAA 58.082 45.000 0.00 0.00 0.00 3.91
703 709 1.047801 AACTTTCGGCCCAGCAAAAT 58.952 45.000 0.00 0.00 0.00 1.82
734 740 3.047280 CGCAAGTGCTACGGCCAA 61.047 61.111 2.24 0.00 39.32 4.52
735 741 2.398554 CGCAAGTGCTACGGCCAAT 61.399 57.895 2.24 0.00 39.32 3.16
785 791 2.260822 AGCCAGAAGGTACAGACACAT 58.739 47.619 0.00 0.00 37.19 3.21
786 792 2.639839 AGCCAGAAGGTACAGACACATT 59.360 45.455 0.00 0.00 37.19 2.71
801 812 0.323957 ACATTGCAGAGCAGAGCAGA 59.676 50.000 0.00 0.00 42.39 4.26
1108 1131 2.439156 CTAAGCTGCCTGCCACCC 60.439 66.667 0.00 0.00 44.23 4.61
1228 1254 1.687493 CTCCTCGCCTTCTTCCCCT 60.687 63.158 0.00 0.00 0.00 4.79
1308 1341 2.091541 TCCCGCCATGACTGATTTTTC 58.908 47.619 0.00 0.00 0.00 2.29
1329 1363 3.820467 TCGTTTCTTGATTGATGGCAGTT 59.180 39.130 0.00 0.00 0.00 3.16
2397 2431 3.119291 GACGCTCCTGTCATCTACATTG 58.881 50.000 0.00 0.00 37.50 2.82
2469 2503 3.181526 GGCAGATTAGCAAGCCTGT 57.818 52.632 0.00 0.00 43.70 4.00
2475 2509 4.437930 GCAGATTAGCAAGCCTGTGTTTAG 60.438 45.833 0.00 0.00 0.00 1.85
2550 2584 6.067263 GAGTGATCCTCTCATGTACAGTAC 57.933 45.833 0.33 3.49 37.22 2.73
2551 2585 5.510430 AGTGATCCTCTCATGTACAGTACA 58.490 41.667 15.90 15.90 43.80 2.90
2577 2611 7.504403 TCAAGTCTTCTGTTCTTCAATCTTCT 58.496 34.615 0.00 0.00 0.00 2.85
2579 2613 7.961325 AGTCTTCTGTTCTTCAATCTTCTTC 57.039 36.000 0.00 0.00 0.00 2.87
2580 2614 7.734942 AGTCTTCTGTTCTTCAATCTTCTTCT 58.265 34.615 0.00 0.00 0.00 2.85
2667 2701 2.292569 CAGTGAGCTGCTTTCACAACAT 59.707 45.455 19.94 1.48 45.72 2.71
2718 2752 7.000472 TCCATGATAAATTTGACATCTCCTCC 59.000 38.462 0.00 0.00 0.00 4.30
2778 2812 1.071699 TCCTTCCGCAGTAAGCTTTGT 59.928 47.619 3.20 0.00 42.61 2.83
2779 2813 2.300723 TCCTTCCGCAGTAAGCTTTGTA 59.699 45.455 3.20 0.00 42.61 2.41
2829 2863 1.449246 GCATCTCTGCTTCGCCACT 60.449 57.895 0.00 0.00 45.32 4.00
2852 2886 4.840271 AGGTTGTTTCCCTATAAACCTCG 58.160 43.478 0.00 0.00 45.88 4.63
2873 2907 2.353323 GGGGTAACAAGTCGATGTTCC 58.647 52.381 7.64 8.99 42.33 3.62
2958 2992 1.467342 GTCCAAGGCGATGGTTAACAC 59.533 52.381 8.10 0.00 41.46 3.32
2985 3019 6.042897 TGAGATCCTTCTGTTCTGCATATCAT 59.957 38.462 0.00 0.00 30.30 2.45
3001 3035 6.146673 TGCATATCATAGCGATGAACTGAAAG 59.853 38.462 13.73 1.92 45.23 2.62
3026 3060 6.128472 GGTTTTCATCACAATGGCAAGAATTC 60.128 38.462 0.00 0.00 33.42 2.17
3027 3061 5.725325 TTCATCACAATGGCAAGAATTCA 57.275 34.783 8.44 0.00 33.42 2.57
3028 3062 5.925506 TCATCACAATGGCAAGAATTCAT 57.074 34.783 8.44 0.00 33.42 2.57
3029 3063 6.288941 TCATCACAATGGCAAGAATTCATT 57.711 33.333 8.44 0.00 33.42 2.57
3032 3996 8.479689 TCATCACAATGGCAAGAATTCATTATT 58.520 29.630 8.44 0.00 33.42 1.40
3049 4013 0.249238 ATTCATGTCTCCGAGCGAGC 60.249 55.000 0.00 0.00 38.62 5.03
3056 4020 3.726631 CTCCGAGCGAGCGACTCAC 62.727 68.421 12.30 0.00 33.58 3.51
3069 4033 1.548719 CGACTCACCACCCATAAGACA 59.451 52.381 0.00 0.00 0.00 3.41
3073 4037 3.008049 ACTCACCACCCATAAGACAAGAC 59.992 47.826 0.00 0.00 0.00 3.01
3097 4061 6.323739 ACTGAAAAAGGAGGAAAGCAAATACA 59.676 34.615 0.00 0.00 0.00 2.29
3098 4062 6.748132 TGAAAAAGGAGGAAAGCAAATACAG 58.252 36.000 0.00 0.00 0.00 2.74
3099 4063 6.323739 TGAAAAAGGAGGAAAGCAAATACAGT 59.676 34.615 0.00 0.00 0.00 3.55
3100 4064 7.504238 TGAAAAAGGAGGAAAGCAAATACAGTA 59.496 33.333 0.00 0.00 0.00 2.74
3101 4065 6.819397 AAAGGAGGAAAGCAAATACAGTAC 57.181 37.500 0.00 0.00 0.00 2.73
3102 4066 5.499004 AGGAGGAAAGCAAATACAGTACA 57.501 39.130 0.00 0.00 0.00 2.90
3107 4071 7.309194 GGAGGAAAGCAAATACAGTACAAACAT 60.309 37.037 0.00 0.00 0.00 2.71
3118 4082 6.034161 ACAGTACAAACATGGGTAGTAGAC 57.966 41.667 0.00 0.00 0.00 2.59
3130 4099 6.263412 TGGGTAGTAGACTAGCAGTAGATT 57.737 41.667 17.97 0.00 45.87 2.40
3131 4100 6.670617 TGGGTAGTAGACTAGCAGTAGATTT 58.329 40.000 17.97 0.00 45.87 2.17
3132 4101 7.124052 TGGGTAGTAGACTAGCAGTAGATTTT 58.876 38.462 17.97 0.00 45.87 1.82
3154 4138 1.573108 AGATGGGGTCGAGTGATTGT 58.427 50.000 0.00 0.00 0.00 2.71
3171 4155 2.589798 TGTGGTTCTTCGTCTTTCGT 57.410 45.000 0.00 0.00 40.80 3.85
3204 4188 0.693622 TGCAAAGTTGGGTATCCGGA 59.306 50.000 6.61 6.61 35.24 5.14
3205 4189 1.339631 TGCAAAGTTGGGTATCCGGAG 60.340 52.381 11.34 0.00 35.24 4.63
3208 4192 3.886123 CAAAGTTGGGTATCCGGAGAAT 58.114 45.455 11.34 0.00 35.24 2.40
3334 4327 1.591619 GCACCTTTCTATTCGTACGCC 59.408 52.381 11.24 0.00 0.00 5.68
3335 4328 2.883574 CACCTTTCTATTCGTACGCCA 58.116 47.619 11.24 0.00 0.00 5.69
3371 4364 1.392589 CGGGTTCCATTATTGCTGCT 58.607 50.000 0.00 0.00 0.00 4.24
3387 4380 1.742761 TGCTAACAATGGAGCAGAGC 58.257 50.000 7.84 0.00 43.64 4.09
3397 4390 0.742281 GGAGCAGAGCAAGCGATCAA 60.742 55.000 0.00 0.00 37.01 2.57
3402 4395 2.200067 CAGAGCAAGCGATCAAGTAGG 58.800 52.381 0.00 0.00 0.00 3.18
3405 4398 1.065854 AGCAAGCGATCAAGTAGGCTT 60.066 47.619 0.00 0.00 45.89 4.35
3416 4409 3.878778 CAAGTAGGCTTGCCAATAGTCT 58.121 45.455 14.54 0.00 44.54 3.24
3417 4410 4.265073 CAAGTAGGCTTGCCAATAGTCTT 58.735 43.478 14.54 5.96 44.54 3.01
3418 4411 3.878778 AGTAGGCTTGCCAATAGTCTTG 58.121 45.455 14.54 0.00 0.00 3.02
3419 4412 2.887151 AGGCTTGCCAATAGTCTTGT 57.113 45.000 14.54 0.00 0.00 3.16
3420 4413 4.469945 AGTAGGCTTGCCAATAGTCTTGTA 59.530 41.667 14.54 0.00 0.00 2.41
3421 4414 3.610911 AGGCTTGCCAATAGTCTTGTAC 58.389 45.455 14.54 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.243907 ACTGATTCGTCACCCTCACG 59.756 55.000 0.00 0.00 38.67 4.35
1 2 2.069273 CAACTGATTCGTCACCCTCAC 58.931 52.381 0.00 0.00 0.00 3.51
2 3 1.001974 CCAACTGATTCGTCACCCTCA 59.998 52.381 0.00 0.00 0.00 3.86
3 4 1.726853 CCAACTGATTCGTCACCCTC 58.273 55.000 0.00 0.00 0.00 4.30
4 5 0.321653 GCCAACTGATTCGTCACCCT 60.322 55.000 0.00 0.00 0.00 4.34
5 6 0.321653 AGCCAACTGATTCGTCACCC 60.322 55.000 0.00 0.00 0.00 4.61
6 7 3.233355 AGCCAACTGATTCGTCACC 57.767 52.632 0.00 0.00 0.00 4.02
16 17 0.397941 TCAACCTCTCCAGCCAACTG 59.602 55.000 0.00 0.00 44.05 3.16
17 18 0.689623 CTCAACCTCTCCAGCCAACT 59.310 55.000 0.00 0.00 0.00 3.16
18 19 0.398318 ACTCAACCTCTCCAGCCAAC 59.602 55.000 0.00 0.00 0.00 3.77
19 20 1.072331 GAACTCAACCTCTCCAGCCAA 59.928 52.381 0.00 0.00 0.00 4.52
20 21 0.687354 GAACTCAACCTCTCCAGCCA 59.313 55.000 0.00 0.00 0.00 4.75
21 22 0.980423 AGAACTCAACCTCTCCAGCC 59.020 55.000 0.00 0.00 0.00 4.85
22 23 2.810852 CAAAGAACTCAACCTCTCCAGC 59.189 50.000 0.00 0.00 0.00 4.85
23 24 2.810852 GCAAAGAACTCAACCTCTCCAG 59.189 50.000 0.00 0.00 0.00 3.86
24 25 2.172505 TGCAAAGAACTCAACCTCTCCA 59.827 45.455 0.00 0.00 0.00 3.86
25 26 2.550180 GTGCAAAGAACTCAACCTCTCC 59.450 50.000 0.00 0.00 0.00 3.71
26 27 2.221981 CGTGCAAAGAACTCAACCTCTC 59.778 50.000 0.00 0.00 0.00 3.20
27 28 2.213499 CGTGCAAAGAACTCAACCTCT 58.787 47.619 0.00 0.00 0.00 3.69
28 29 1.334149 GCGTGCAAAGAACTCAACCTC 60.334 52.381 0.00 0.00 0.00 3.85
29 30 0.663153 GCGTGCAAAGAACTCAACCT 59.337 50.000 0.00 0.00 0.00 3.50
30 31 0.317854 GGCGTGCAAAGAACTCAACC 60.318 55.000 0.00 0.00 0.00 3.77
31 32 0.657368 CGGCGTGCAAAGAACTCAAC 60.657 55.000 0.00 0.00 0.00 3.18
32 33 1.646540 CGGCGTGCAAAGAACTCAA 59.353 52.632 0.00 0.00 0.00 3.02
33 34 2.892334 GCGGCGTGCAAAGAACTCA 61.892 57.895 9.37 0.00 45.45 3.41
34 35 2.127232 GCGGCGTGCAAAGAACTC 60.127 61.111 9.37 0.00 45.45 3.01
44 45 2.733218 TTCGAACTCTGCGGCGTG 60.733 61.111 9.37 1.75 0.00 5.34
45 46 2.694829 AAGTTCGAACTCTGCGGCGT 62.695 55.000 29.82 10.05 38.57 5.68
46 47 1.557443 AAAGTTCGAACTCTGCGGCG 61.557 55.000 29.82 0.51 38.57 6.46
47 48 0.164002 GAAAGTTCGAACTCTGCGGC 59.836 55.000 29.82 12.46 38.57 6.53
48 49 1.721926 GAGAAAGTTCGAACTCTGCGG 59.278 52.381 29.82 0.00 38.57 5.69
49 50 2.667137 AGAGAAAGTTCGAACTCTGCG 58.333 47.619 29.82 0.00 38.57 5.18
50 51 3.185391 CCAAGAGAAAGTTCGAACTCTGC 59.815 47.826 29.82 20.67 38.57 4.26
51 52 3.743396 CCCAAGAGAAAGTTCGAACTCTG 59.257 47.826 29.82 18.31 38.57 3.35
52 53 3.388350 ACCCAAGAGAAAGTTCGAACTCT 59.612 43.478 29.82 23.05 38.57 3.24
53 54 3.729966 ACCCAAGAGAAAGTTCGAACTC 58.270 45.455 29.82 18.85 38.57 3.01
54 55 3.388350 AGACCCAAGAGAAAGTTCGAACT 59.612 43.478 24.93 24.93 42.04 3.01
55 56 3.495001 CAGACCCAAGAGAAAGTTCGAAC 59.505 47.826 20.71 20.71 0.00 3.95
56 57 3.728845 CAGACCCAAGAGAAAGTTCGAA 58.271 45.455 0.00 0.00 0.00 3.71
57 58 2.548067 GCAGACCCAAGAGAAAGTTCGA 60.548 50.000 0.00 0.00 0.00 3.71
58 59 1.801178 GCAGACCCAAGAGAAAGTTCG 59.199 52.381 0.00 0.00 0.00 3.95
59 60 1.801178 CGCAGACCCAAGAGAAAGTTC 59.199 52.381 0.00 0.00 0.00 3.01
60 61 1.543429 CCGCAGACCCAAGAGAAAGTT 60.543 52.381 0.00 0.00 0.00 2.66
61 62 0.035458 CCGCAGACCCAAGAGAAAGT 59.965 55.000 0.00 0.00 0.00 2.66
62 63 0.321671 TCCGCAGACCCAAGAGAAAG 59.678 55.000 0.00 0.00 0.00 2.62
63 64 0.321671 CTCCGCAGACCCAAGAGAAA 59.678 55.000 0.00 0.00 0.00 2.52
64 65 1.975327 CTCCGCAGACCCAAGAGAA 59.025 57.895 0.00 0.00 0.00 2.87
65 66 2.650116 GCTCCGCAGACCCAAGAGA 61.650 63.158 0.00 0.00 0.00 3.10
66 67 2.125350 GCTCCGCAGACCCAAGAG 60.125 66.667 0.00 0.00 0.00 2.85
67 68 3.706373 GGCTCCGCAGACCCAAGA 61.706 66.667 0.00 0.00 0.00 3.02
68 69 4.785453 GGGCTCCGCAGACCCAAG 62.785 72.222 0.00 0.00 43.28 3.61
73 74 1.522580 GATTCAGGGCTCCGCAGAC 60.523 63.158 0.00 0.00 0.00 3.51
74 75 2.735772 GGATTCAGGGCTCCGCAGA 61.736 63.158 0.00 0.00 0.00 4.26
75 76 2.203126 GGATTCAGGGCTCCGCAG 60.203 66.667 0.00 0.00 0.00 5.18
76 77 4.161295 CGGATTCAGGGCTCCGCA 62.161 66.667 0.00 0.00 46.87 5.69
79 80 1.153349 GTGTCGGATTCAGGGCTCC 60.153 63.158 0.00 0.00 0.00 4.70
80 81 1.519455 CGTGTCGGATTCAGGGCTC 60.519 63.158 0.00 0.00 0.00 4.70
81 82 2.579201 CGTGTCGGATTCAGGGCT 59.421 61.111 0.00 0.00 0.00 5.19
92 93 1.626654 GCACATCTTGGTCCGTGTCG 61.627 60.000 0.00 0.00 0.00 4.35
93 94 0.602638 TGCACATCTTGGTCCGTGTC 60.603 55.000 0.00 0.00 0.00 3.67
94 95 0.884704 GTGCACATCTTGGTCCGTGT 60.885 55.000 13.17 0.00 0.00 4.49
95 96 1.868997 GTGCACATCTTGGTCCGTG 59.131 57.895 13.17 0.00 0.00 4.94
96 97 1.667830 CGTGCACATCTTGGTCCGT 60.668 57.895 18.64 0.00 0.00 4.69
97 98 1.626654 GACGTGCACATCTTGGTCCG 61.627 60.000 18.64 0.60 0.00 4.79
98 99 1.626654 CGACGTGCACATCTTGGTCC 61.627 60.000 18.64 0.00 0.00 4.46
99 100 0.666274 TCGACGTGCACATCTTGGTC 60.666 55.000 18.64 13.32 0.00 4.02
100 101 0.944311 GTCGACGTGCACATCTTGGT 60.944 55.000 18.64 4.96 0.00 3.67
101 102 0.943835 TGTCGACGTGCACATCTTGG 60.944 55.000 18.64 1.21 0.00 3.61
102 103 0.436150 CTGTCGACGTGCACATCTTG 59.564 55.000 18.64 2.02 0.00 3.02
103 104 1.284982 GCTGTCGACGTGCACATCTT 61.285 55.000 22.72 0.00 0.00 2.40
104 105 1.734477 GCTGTCGACGTGCACATCT 60.734 57.895 22.72 0.00 0.00 2.90
105 106 2.730672 GGCTGTCGACGTGCACATC 61.731 63.158 26.67 10.79 0.00 3.06
106 107 2.738521 GGCTGTCGACGTGCACAT 60.739 61.111 26.67 0.00 0.00 3.21
107 108 4.961511 GGGCTGTCGACGTGCACA 62.962 66.667 26.67 4.22 0.00 4.57
110 111 4.796231 ATCGGGCTGTCGACGTGC 62.796 66.667 20.50 20.50 42.21 5.34
111 112 2.579787 GATCGGGCTGTCGACGTG 60.580 66.667 11.62 7.53 42.21 4.49
112 113 2.543687 CTTGATCGGGCTGTCGACGT 62.544 60.000 11.62 0.00 42.21 4.34
113 114 1.874019 CTTGATCGGGCTGTCGACG 60.874 63.158 11.62 7.05 42.21 5.12
114 115 0.454600 TACTTGATCGGGCTGTCGAC 59.545 55.000 9.11 9.11 42.21 4.20
115 116 0.454600 GTACTTGATCGGGCTGTCGA 59.545 55.000 0.00 0.00 43.61 4.20
116 117 0.456221 AGTACTTGATCGGGCTGTCG 59.544 55.000 0.00 0.00 0.00 4.35
117 118 1.534175 CGAGTACTTGATCGGGCTGTC 60.534 57.143 3.81 0.00 35.33 3.51
118 119 0.456221 CGAGTACTTGATCGGGCTGT 59.544 55.000 3.81 0.00 35.33 4.40
119 120 0.738975 TCGAGTACTTGATCGGGCTG 59.261 55.000 8.87 0.00 39.38 4.85
120 121 0.739561 GTCGAGTACTTGATCGGGCT 59.260 55.000 15.96 0.00 39.38 5.19
121 122 0.739561 AGTCGAGTACTTGATCGGGC 59.260 55.000 15.96 3.06 39.38 6.13
122 123 2.941064 TGTAGTCGAGTACTTGATCGGG 59.059 50.000 26.40 0.00 39.80 5.14
123 124 3.622163 ACTGTAGTCGAGTACTTGATCGG 59.378 47.826 26.40 15.14 39.80 4.18
124 125 4.824301 GACTGTAGTCGAGTACTTGATCG 58.176 47.826 26.40 6.01 39.80 3.69
147 148 0.942884 GAAGTTCGTGGACCGGTGAC 60.943 60.000 14.63 7.68 37.11 3.67
148 149 1.364901 GAAGTTCGTGGACCGGTGA 59.635 57.895 14.63 0.00 37.11 4.02
149 150 1.666872 GGAAGTTCGTGGACCGGTG 60.667 63.158 14.63 0.00 37.11 4.94
150 151 1.835712 AGGAAGTTCGTGGACCGGT 60.836 57.895 6.92 6.92 37.11 5.28
151 152 1.374252 CAGGAAGTTCGTGGACCGG 60.374 63.158 16.17 0.00 37.11 5.28
152 153 0.666577 GACAGGAAGTTCGTGGACCG 60.667 60.000 24.98 4.73 36.65 4.79
153 154 0.391597 TGACAGGAAGTTCGTGGACC 59.608 55.000 24.98 15.57 36.65 4.46
154 155 1.202486 TGTGACAGGAAGTTCGTGGAC 60.202 52.381 24.98 20.54 36.65 4.02
155 156 1.116308 TGTGACAGGAAGTTCGTGGA 58.884 50.000 24.98 11.66 36.65 4.02
156 157 1.217882 GTGTGACAGGAAGTTCGTGG 58.782 55.000 24.98 10.72 36.65 4.94
157 158 1.217882 GGTGTGACAGGAAGTTCGTG 58.782 55.000 21.04 21.04 38.16 4.35
158 159 0.106149 GGGTGTGACAGGAAGTTCGT 59.894 55.000 0.00 0.00 0.00 3.85
159 160 0.602905 GGGGTGTGACAGGAAGTTCG 60.603 60.000 0.00 0.00 0.00 3.95
160 161 0.765510 AGGGGTGTGACAGGAAGTTC 59.234 55.000 0.00 0.00 0.00 3.01
161 162 0.474184 CAGGGGTGTGACAGGAAGTT 59.526 55.000 0.00 0.00 0.00 2.66
162 163 0.399949 TCAGGGGTGTGACAGGAAGT 60.400 55.000 0.00 0.00 0.00 3.01
163 164 0.035458 GTCAGGGGTGTGACAGGAAG 59.965 60.000 0.00 0.00 45.34 3.46
164 165 1.754380 CGTCAGGGGTGTGACAGGAA 61.754 60.000 4.97 0.00 46.19 3.36
165 166 2.207229 CGTCAGGGGTGTGACAGGA 61.207 63.158 4.97 0.00 46.19 3.86
166 167 2.343758 CGTCAGGGGTGTGACAGG 59.656 66.667 4.97 0.00 46.19 4.00
167 168 2.357517 GCGTCAGGGGTGTGACAG 60.358 66.667 4.97 0.00 46.19 3.51
563 564 0.613777 AAGAACCCTCCTAGTTGCCG 59.386 55.000 0.00 0.00 0.00 5.69
671 677 8.350852 TGGGCCGAAAGTTTATTATTTCTAAA 57.649 30.769 0.00 0.00 34.05 1.85
672 678 7.415877 GCTGGGCCGAAAGTTTATTATTTCTAA 60.416 37.037 0.00 0.00 34.05 2.10
699 705 5.648092 ACTTGCGGTTCTGCTCTATAATTTT 59.352 36.000 5.23 0.00 35.36 1.82
700 706 5.065218 CACTTGCGGTTCTGCTCTATAATTT 59.935 40.000 5.23 0.00 35.36 1.82
703 709 3.521560 CACTTGCGGTTCTGCTCTATAA 58.478 45.455 5.23 0.00 35.36 0.98
731 737 7.595502 GTCTTCAGTACGGATACATAAGATTGG 59.404 40.741 0.00 0.00 37.01 3.16
732 738 8.135529 TGTCTTCAGTACGGATACATAAGATTG 58.864 37.037 0.00 0.00 37.01 2.67
733 739 8.234136 TGTCTTCAGTACGGATACATAAGATT 57.766 34.615 0.00 0.00 37.01 2.40
734 740 7.522399 GCTGTCTTCAGTACGGATACATAAGAT 60.522 40.741 10.59 0.00 43.05 2.40
735 741 6.238676 GCTGTCTTCAGTACGGATACATAAGA 60.239 42.308 10.59 1.67 43.05 2.10
785 791 1.375652 GCTCTGCTCTGCTCTGCAA 60.376 57.895 0.00 0.00 38.41 4.08
786 792 2.265109 GCTCTGCTCTGCTCTGCA 59.735 61.111 0.00 0.00 36.92 4.41
820 831 1.221466 CGGTCTCTTGCGTTGCTTCA 61.221 55.000 0.00 0.00 0.00 3.02
892 903 1.078214 CGGAGCAAGCCAAGGATCA 60.078 57.895 0.00 0.00 0.00 2.92
1228 1254 1.506309 ATACGATACGTACCGCGGCA 61.506 55.000 28.58 10.63 45.07 5.69
1308 1341 3.837213 ACTGCCATCAATCAAGAAACG 57.163 42.857 0.00 0.00 0.00 3.60
1353 1387 0.454957 CGTAGTTCACCCCGTACGTG 60.455 60.000 15.21 6.26 34.84 4.49
1773 1807 3.525545 GAGGGCGGGTACGAGGTC 61.526 72.222 0.00 0.00 44.60 3.85
1815 1849 1.883084 CGGCTTCAGGTACGGCATC 60.883 63.158 0.00 0.00 0.00 3.91
1896 1930 1.065928 CTCCGGGTCGCTCATGTAC 59.934 63.158 0.00 0.00 0.00 2.90
2397 2431 6.299141 TCAGGTCCATAATGCTAGGAAAATC 58.701 40.000 0.00 0.00 32.30 2.17
2414 2448 5.674525 TGTCAGTAATCATCAATCAGGTCC 58.325 41.667 0.00 0.00 0.00 4.46
2469 2503 5.981315 CGAGTTGTGGTCTTCTAACTAAACA 59.019 40.000 0.00 0.00 33.83 2.83
2475 2509 2.067013 GGCGAGTTGTGGTCTTCTAAC 58.933 52.381 0.00 0.00 0.00 2.34
2547 2581 7.715265 TTGAAGAACAGAAGACTTGATGTAC 57.285 36.000 0.00 0.00 0.00 2.90
2548 2582 8.370940 AGATTGAAGAACAGAAGACTTGATGTA 58.629 33.333 0.00 0.00 0.00 2.29
2549 2583 7.222872 AGATTGAAGAACAGAAGACTTGATGT 58.777 34.615 0.00 0.00 0.00 3.06
2550 2584 7.670009 AGATTGAAGAACAGAAGACTTGATG 57.330 36.000 0.00 0.00 0.00 3.07
2551 2585 8.156165 AGAAGATTGAAGAACAGAAGACTTGAT 58.844 33.333 0.00 0.00 0.00 2.57
2667 2701 4.379339 AAAAGGTGCGCTTGAAGTTTTA 57.621 36.364 9.73 0.00 0.00 1.52
2702 2736 4.163078 ACGATGAGGAGGAGATGTCAAATT 59.837 41.667 0.00 0.00 0.00 1.82
2718 2752 6.454848 GCAAGTAGAGAAAATGACACGATGAG 60.455 42.308 0.00 0.00 0.00 2.90
2778 2812 8.251026 CCATACATATGTAGGAAAGCGATTCTA 58.749 37.037 25.15 0.00 34.53 2.10
2779 2813 7.039011 TCCATACATATGTAGGAAAGCGATTCT 60.039 37.037 25.15 0.61 34.53 2.40
2829 2863 5.104817 CCGAGGTTTATAGGGAAACAACCTA 60.105 44.000 1.89 0.00 45.92 3.08
2852 2886 2.353323 GAACATCGACTTGTTACCCCC 58.647 52.381 4.44 0.00 39.85 5.40
2873 2907 3.005684 TGTGCAAGCAATCCTTAACTTGG 59.994 43.478 0.00 0.00 39.87 3.61
2901 2935 3.118261 GCTGAAGGTCATGATGGGTTCTA 60.118 47.826 0.00 0.00 0.00 2.10
2958 2992 3.935315 TGCAGAACAGAAGGATCTCAAG 58.065 45.455 0.00 0.00 32.03 3.02
2985 3019 5.060506 TGAAAACCTTTCAGTTCATCGCTA 58.939 37.500 0.00 0.00 0.00 4.26
3001 3035 4.255833 TCTTGCCATTGTGATGAAAACC 57.744 40.909 0.00 0.00 35.16 3.27
3026 3060 3.642705 TCGCTCGGAGACATGAATAATG 58.357 45.455 9.69 0.00 42.48 1.90
3027 3061 3.858877 GCTCGCTCGGAGACATGAATAAT 60.859 47.826 9.69 0.00 46.23 1.28
3028 3062 2.543861 GCTCGCTCGGAGACATGAATAA 60.544 50.000 9.69 0.00 46.23 1.40
3029 3063 1.001268 GCTCGCTCGGAGACATGAATA 60.001 52.381 9.69 0.00 46.23 1.75
3032 3996 2.801421 GCTCGCTCGGAGACATGA 59.199 61.111 9.69 0.00 46.23 3.07
3049 4013 1.548719 TGTCTTATGGGTGGTGAGTCG 59.451 52.381 0.00 0.00 0.00 4.18
3056 4020 3.981071 TCAGTCTTGTCTTATGGGTGG 57.019 47.619 0.00 0.00 0.00 4.61
3069 4033 4.536765 TGCTTTCCTCCTTTTTCAGTCTT 58.463 39.130 0.00 0.00 0.00 3.01
3073 4037 6.748132 TGTATTTGCTTTCCTCCTTTTTCAG 58.252 36.000 0.00 0.00 0.00 3.02
3097 4061 6.096564 GCTAGTCTACTACCCATGTTTGTACT 59.903 42.308 0.00 0.00 0.00 2.73
3098 4062 6.127535 TGCTAGTCTACTACCCATGTTTGTAC 60.128 42.308 0.00 0.00 0.00 2.90
3099 4063 5.953548 TGCTAGTCTACTACCCATGTTTGTA 59.046 40.000 0.00 0.00 0.00 2.41
3100 4064 4.775780 TGCTAGTCTACTACCCATGTTTGT 59.224 41.667 0.00 0.00 0.00 2.83
3101 4065 5.105310 ACTGCTAGTCTACTACCCATGTTTG 60.105 44.000 0.00 0.00 0.00 2.93
3102 4066 5.024118 ACTGCTAGTCTACTACCCATGTTT 58.976 41.667 0.00 0.00 0.00 2.83
3107 4071 5.908562 ATCTACTGCTAGTCTACTACCCA 57.091 43.478 0.00 0.00 0.00 4.51
3130 4099 4.837093 ATCACTCGACCCCATCTAAAAA 57.163 40.909 0.00 0.00 0.00 1.94
3131 4100 4.019681 ACAATCACTCGACCCCATCTAAAA 60.020 41.667 0.00 0.00 0.00 1.52
3132 4101 3.517901 ACAATCACTCGACCCCATCTAAA 59.482 43.478 0.00 0.00 0.00 1.85
3134 4103 2.430694 CACAATCACTCGACCCCATCTA 59.569 50.000 0.00 0.00 0.00 1.98
3135 4104 1.208052 CACAATCACTCGACCCCATCT 59.792 52.381 0.00 0.00 0.00 2.90
3140 4124 1.002087 AGAACCACAATCACTCGACCC 59.998 52.381 0.00 0.00 0.00 4.46
3154 4138 4.033587 CAGAAAACGAAAGACGAAGAACCA 59.966 41.667 0.00 0.00 45.77 3.67
3171 4155 5.350633 CAACTTTGCACAAGGATCAGAAAA 58.649 37.500 11.59 0.00 0.00 2.29
3204 4188 3.325870 TCGCGAGTGTTCAATCAATTCT 58.674 40.909 3.71 0.00 0.00 2.40
3205 4189 3.722555 TCGCGAGTGTTCAATCAATTC 57.277 42.857 3.71 0.00 0.00 2.17
3208 4192 2.475111 GAGTTCGCGAGTGTTCAATCAA 59.525 45.455 9.59 0.00 0.00 2.57
3371 4364 2.086869 GCTTGCTCTGCTCCATTGTTA 58.913 47.619 0.00 0.00 0.00 2.41
3397 4390 3.264450 ACAAGACTATTGGCAAGCCTACT 59.736 43.478 12.96 0.00 36.94 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.