Multiple sequence alignment - TraesCS6B01G187500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G187500 chr6B 100.000 4869 0 0 1 4869 214024798 214029666 0.000000e+00 8992.0
1 TraesCS6B01G187500 chr6B 94.649 542 25 2 1301 1841 23483466 23482928 0.000000e+00 837.0
2 TraesCS6B01G187500 chr6B 91.321 530 42 3 2337 2863 68960614 68961142 0.000000e+00 721.0
3 TraesCS6B01G187500 chr6B 90.943 530 44 3 2337 2863 68982459 68982987 0.000000e+00 710.0
4 TraesCS6B01G187500 chr6B 96.266 241 8 1 1601 1841 441556403 441556642 1.270000e-105 394.0
5 TraesCS6B01G187500 chr6B 95.436 241 11 0 1601 1841 441983204 441982964 7.640000e-103 385.0
6 TraesCS6B01G187500 chr6B 83.168 202 34 0 1001 1202 502721672 502721873 8.320000e-43 185.0
7 TraesCS6B01G187500 chr6B 82.673 202 35 0 1001 1202 705836689 705836488 3.870000e-41 180.0
8 TraesCS6B01G187500 chr6B 96.774 93 3 0 2047 2139 23482925 23482833 6.530000e-34 156.0
9 TraesCS6B01G187500 chr6B 93.069 101 7 0 2044 2144 441556642 441556742 1.090000e-31 148.0
10 TraesCS6B01G187500 chr6B 91.837 98 8 0 2047 2144 441982961 441982864 2.360000e-28 137.0
11 TraesCS6B01G187500 chr6D 92.717 1991 76 24 2898 4832 122255648 122257625 0.000000e+00 2809.0
12 TraesCS6B01G187500 chr6D 91.280 1227 48 20 403 1586 122253120 122254330 0.000000e+00 1618.0
13 TraesCS6B01G187500 chr6D 89.247 1302 95 22 1634 2904 122254336 122255623 0.000000e+00 1587.0
14 TraesCS6B01G187500 chr6A 93.318 1302 74 5 2898 4196 149926101 149924810 0.000000e+00 1910.0
15 TraesCS6B01G187500 chr6A 83.637 1644 154 56 660 2219 149928455 149926843 0.000000e+00 1439.0
16 TraesCS6B01G187500 chr6A 87.051 919 91 16 3281 4191 206039434 206040332 0.000000e+00 1013.0
17 TraesCS6B01G187500 chr6A 89.439 606 47 7 2266 2866 149926841 149926248 0.000000e+00 749.0
18 TraesCS6B01G187500 chr6A 87.585 588 26 15 4319 4868 149924514 149923936 5.310000e-179 638.0
19 TraesCS6B01G187500 chr6A 86.881 404 32 5 2 385 99089010 99089412 2.690000e-117 433.0
20 TraesCS6B01G187500 chr6A 93.363 226 12 2 421 643 149929040 149928815 1.010000e-86 331.0
21 TraesCS6B01G187500 chr1B 89.965 847 64 7 3357 4191 114687004 114687841 0.000000e+00 1074.0
22 TraesCS6B01G187500 chr1B 94.649 542 25 2 1301 1841 562670545 562671083 0.000000e+00 837.0
23 TraesCS6B01G187500 chr1B 93.000 100 7 0 2044 2143 562671083 562671182 3.930000e-31 147.0
24 TraesCS6B01G187500 chr5A 87.220 939 90 15 3262 4191 150629138 150630055 0.000000e+00 1042.0
25 TraesCS6B01G187500 chr5A 77.830 212 36 5 1001 1202 226795845 226795635 2.380000e-23 121.0
26 TraesCS6B01G187500 chr2B 94.689 546 24 3 1301 1844 750538038 750538580 0.000000e+00 843.0
27 TraesCS6B01G187500 chr2B 95.436 241 11 0 1601 1841 763202108 763201868 7.640000e-103 385.0
28 TraesCS6B01G187500 chr2B 96.939 98 3 0 2047 2144 750538579 750538676 1.080000e-36 165.0
29 TraesCS6B01G187500 chr2B 93.878 98 6 0 2047 2144 763201865 763201768 1.090000e-31 148.0
30 TraesCS6B01G187500 chr3B 93.911 542 29 3 1301 1841 627446857 627446319 0.000000e+00 815.0
31 TraesCS6B01G187500 chr3B 90.566 530 45 4 2337 2863 134460975 134461502 0.000000e+00 697.0
32 TraesCS6B01G187500 chr3B 90.548 529 45 3 2337 2863 42580403 42580928 0.000000e+00 695.0
33 TraesCS6B01G187500 chr3B 96.939 98 3 0 2047 2144 627446316 627446219 1.080000e-36 165.0
34 TraesCS6B01G187500 chr3B 78.049 205 40 5 3 204 804388133 804387931 1.840000e-24 124.0
35 TraesCS6B01G187500 chr4B 93.990 416 25 0 1423 1838 635373782 635374197 8.890000e-177 630.0
36 TraesCS6B01G187500 chr7D 84.901 404 35 12 1 382 561490703 561491102 7.640000e-103 385.0
37 TraesCS6B01G187500 chr7D 90.987 233 19 1 2 232 29765969 29766201 3.660000e-81 313.0
38 TraesCS6B01G187500 chr7D 81.699 153 19 9 237 384 29775089 29775237 8.560000e-23 119.0
39 TraesCS6B01G187500 chr7B 84.290 331 52 0 2958 3288 640715971 640716301 1.690000e-84 324.0
40 TraesCS6B01G187500 chr7B 87.624 202 25 0 1001 1202 640714530 640714731 8.150000e-58 235.0
41 TraesCS6B01G187500 chr1A 83.663 202 33 0 1001 1202 563755365 563755566 1.790000e-44 191.0
42 TraesCS6B01G187500 chr3D 82.673 202 35 0 1001 1202 513939350 513939551 3.870000e-41 180.0
43 TraesCS6B01G187500 chr7A 81.683 202 37 0 1001 1202 612703179 612703380 8.380000e-38 169.0
44 TraesCS6B01G187500 chr5B 96.429 56 2 0 1645 1700 270667277 270667332 5.190000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G187500 chr6B 214024798 214029666 4868 False 8992.000000 8992 100.000000 1 4869 1 chr6B.!!$F3 4868
1 TraesCS6B01G187500 chr6B 68960614 68961142 528 False 721.000000 721 91.321000 2337 2863 1 chr6B.!!$F1 526
2 TraesCS6B01G187500 chr6B 68982459 68982987 528 False 710.000000 710 90.943000 2337 2863 1 chr6B.!!$F2 526
3 TraesCS6B01G187500 chr6B 23482833 23483466 633 True 496.500000 837 95.711500 1301 2139 2 chr6B.!!$R2 838
4 TraesCS6B01G187500 chr6D 122253120 122257625 4505 False 2004.666667 2809 91.081333 403 4832 3 chr6D.!!$F1 4429
5 TraesCS6B01G187500 chr6A 149923936 149929040 5104 True 1013.400000 1910 89.468400 421 4868 5 chr6A.!!$R1 4447
6 TraesCS6B01G187500 chr6A 206039434 206040332 898 False 1013.000000 1013 87.051000 3281 4191 1 chr6A.!!$F2 910
7 TraesCS6B01G187500 chr1B 114687004 114687841 837 False 1074.000000 1074 89.965000 3357 4191 1 chr1B.!!$F1 834
8 TraesCS6B01G187500 chr1B 562670545 562671182 637 False 492.000000 837 93.824500 1301 2143 2 chr1B.!!$F2 842
9 TraesCS6B01G187500 chr5A 150629138 150630055 917 False 1042.000000 1042 87.220000 3262 4191 1 chr5A.!!$F1 929
10 TraesCS6B01G187500 chr2B 750538038 750538676 638 False 504.000000 843 95.814000 1301 2144 2 chr2B.!!$F1 843
11 TraesCS6B01G187500 chr3B 134460975 134461502 527 False 697.000000 697 90.566000 2337 2863 1 chr3B.!!$F2 526
12 TraesCS6B01G187500 chr3B 42580403 42580928 525 False 695.000000 695 90.548000 2337 2863 1 chr3B.!!$F1 526
13 TraesCS6B01G187500 chr3B 627446219 627446857 638 True 490.000000 815 95.425000 1301 2144 2 chr3B.!!$R2 843
14 TraesCS6B01G187500 chr7B 640714530 640716301 1771 False 279.500000 324 85.957000 1001 3288 2 chr7B.!!$F1 2287

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
360 361 0.106167 ATCGGGTGGCTAGCAGTAGA 60.106 55.000 18.24 9.17 0.00 2.59 F
373 374 0.108329 CAGTAGACCGGCGGAATGTT 60.108 55.000 35.78 9.95 0.00 2.71 F
741 1092 0.324275 CCACCACAAATCCCCCGAAT 60.324 55.000 0.00 0.00 0.00 3.34 F
742 1093 1.064314 CCACCACAAATCCCCCGAATA 60.064 52.381 0.00 0.00 0.00 1.75 F
1964 2637 1.153353 CGCACCTCCACATTAAACGT 58.847 50.000 0.00 0.00 0.00 3.99 F
3676 4602 0.034059 ACTGTCCTTTGTCTCAGGCG 59.966 55.000 0.00 0.00 32.92 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1281 1643 0.106708 AATCACACATCCGATCCCCG 59.893 55.000 0.00 0.00 38.18 5.73 R
1914 2571 0.826715 TGCCTCCGAAGAATCAGAGG 59.173 55.000 4.12 4.12 0.00 3.69 R
2132 2827 1.160137 CACAGTTTAGCCTGGACAGC 58.840 55.000 0.00 0.00 36.75 4.40 R
2196 2928 3.074412 ACACTAGCAATCCAAAAGTCCG 58.926 45.455 0.00 0.00 0.00 4.79 R
3841 4767 0.817634 CGTCAAGGGCAAGAACACCA 60.818 55.000 0.00 0.00 0.00 4.17 R
4559 5710 1.305219 TAGCAGGCACGTTCAATGGC 61.305 55.000 0.00 0.00 42.75 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.238439 CTTTTGCTGGACACGATGGT 58.762 50.000 0.00 0.00 0.00 3.55
28 29 2.741985 CACGATGGTGCAAGGCGA 60.742 61.111 0.00 0.00 37.35 5.54
29 30 2.742372 ACGATGGTGCAAGGCGAC 60.742 61.111 6.53 0.00 0.00 5.19
30 31 3.853330 CGATGGTGCAAGGCGACG 61.853 66.667 0.00 0.00 0.00 5.12
31 32 2.434185 GATGGTGCAAGGCGACGA 60.434 61.111 0.00 0.00 0.00 4.20
32 33 2.740714 GATGGTGCAAGGCGACGAC 61.741 63.158 0.00 0.00 0.00 4.34
33 34 4.980805 TGGTGCAAGGCGACGACC 62.981 66.667 0.00 0.00 0.00 4.79
67 68 2.462503 CGTGGTTACGTTGGGGATG 58.537 57.895 0.00 0.00 44.99 3.51
68 69 0.320946 CGTGGTTACGTTGGGGATGT 60.321 55.000 0.00 0.00 44.99 3.06
69 70 1.067000 CGTGGTTACGTTGGGGATGTA 60.067 52.381 0.00 0.00 44.99 2.29
70 71 2.624636 GTGGTTACGTTGGGGATGTAG 58.375 52.381 0.00 0.00 31.61 2.74
71 72 1.065998 TGGTTACGTTGGGGATGTAGC 60.066 52.381 0.00 0.00 31.61 3.58
72 73 1.065998 GGTTACGTTGGGGATGTAGCA 60.066 52.381 0.00 0.00 33.89 3.49
73 74 2.616001 GGTTACGTTGGGGATGTAGCAA 60.616 50.000 0.00 0.00 33.89 3.91
74 75 3.275999 GTTACGTTGGGGATGTAGCAAT 58.724 45.455 0.00 0.00 32.86 3.56
75 76 1.750193 ACGTTGGGGATGTAGCAATG 58.250 50.000 0.00 0.00 0.00 2.82
76 77 1.280710 ACGTTGGGGATGTAGCAATGA 59.719 47.619 0.00 0.00 0.00 2.57
77 78 2.092429 ACGTTGGGGATGTAGCAATGAT 60.092 45.455 0.00 0.00 0.00 2.45
78 79 3.135712 ACGTTGGGGATGTAGCAATGATA 59.864 43.478 0.00 0.00 0.00 2.15
79 80 4.202461 ACGTTGGGGATGTAGCAATGATAT 60.202 41.667 0.00 0.00 0.00 1.63
80 81 4.393062 CGTTGGGGATGTAGCAATGATATC 59.607 45.833 0.00 0.00 0.00 1.63
81 82 4.574674 TGGGGATGTAGCAATGATATCC 57.425 45.455 0.00 0.00 37.23 2.59
84 85 3.891049 GGATGTAGCAATGATATCCCCC 58.109 50.000 0.00 0.00 32.93 5.40
85 86 3.535561 GATGTAGCAATGATATCCCCCG 58.464 50.000 0.00 0.00 0.00 5.73
86 87 1.003118 TGTAGCAATGATATCCCCCGC 59.997 52.381 0.00 0.00 0.00 6.13
87 88 0.249120 TAGCAATGATATCCCCCGCG 59.751 55.000 0.00 0.00 0.00 6.46
88 89 2.690778 GCAATGATATCCCCCGCGC 61.691 63.158 0.00 0.00 0.00 6.86
89 90 2.047274 AATGATATCCCCCGCGCG 60.047 61.111 25.67 25.67 0.00 6.86
90 91 4.760047 ATGATATCCCCCGCGCGC 62.760 66.667 27.36 23.91 0.00 6.86
103 104 4.498520 CGCGCTGGATCTGACCGT 62.499 66.667 5.56 0.00 0.00 4.83
104 105 2.125512 GCGCTGGATCTGACCGTT 60.126 61.111 0.00 0.00 0.00 4.44
105 106 1.741770 GCGCTGGATCTGACCGTTT 60.742 57.895 0.00 0.00 0.00 3.60
106 107 1.298859 GCGCTGGATCTGACCGTTTT 61.299 55.000 0.00 0.00 0.00 2.43
107 108 1.156736 CGCTGGATCTGACCGTTTTT 58.843 50.000 0.00 0.00 0.00 1.94
108 109 2.343101 CGCTGGATCTGACCGTTTTTA 58.657 47.619 0.00 0.00 0.00 1.52
109 110 2.348666 CGCTGGATCTGACCGTTTTTAG 59.651 50.000 0.00 0.00 0.00 1.85
110 111 3.596214 GCTGGATCTGACCGTTTTTAGA 58.404 45.455 0.00 0.00 0.00 2.10
111 112 3.619038 GCTGGATCTGACCGTTTTTAGAG 59.381 47.826 0.00 0.00 0.00 2.43
112 113 3.596214 TGGATCTGACCGTTTTTAGAGC 58.404 45.455 0.00 0.00 0.00 4.09
113 114 3.260884 TGGATCTGACCGTTTTTAGAGCT 59.739 43.478 0.00 0.00 0.00 4.09
114 115 3.619038 GGATCTGACCGTTTTTAGAGCTG 59.381 47.826 0.00 0.00 0.00 4.24
115 116 2.413837 TCTGACCGTTTTTAGAGCTGC 58.586 47.619 0.00 0.00 0.00 5.25
116 117 2.143122 CTGACCGTTTTTAGAGCTGCA 58.857 47.619 1.02 0.00 0.00 4.41
117 118 2.744202 CTGACCGTTTTTAGAGCTGCAT 59.256 45.455 1.02 0.00 0.00 3.96
118 119 2.742053 TGACCGTTTTTAGAGCTGCATC 59.258 45.455 1.02 0.00 0.00 3.91
119 120 2.084546 ACCGTTTTTAGAGCTGCATCC 58.915 47.619 1.02 0.00 0.00 3.51
120 121 2.083774 CCGTTTTTAGAGCTGCATCCA 58.916 47.619 1.02 0.00 0.00 3.41
121 122 2.684881 CCGTTTTTAGAGCTGCATCCAT 59.315 45.455 1.02 0.00 0.00 3.41
122 123 3.488047 CCGTTTTTAGAGCTGCATCCATG 60.488 47.826 1.02 0.00 0.00 3.66
123 124 3.488047 CGTTTTTAGAGCTGCATCCATGG 60.488 47.826 4.97 4.97 0.00 3.66
124 125 3.370840 TTTTAGAGCTGCATCCATGGT 57.629 42.857 12.58 0.00 0.00 3.55
125 126 2.336945 TTAGAGCTGCATCCATGGTG 57.663 50.000 12.58 10.59 0.00 4.17
126 127 1.499368 TAGAGCTGCATCCATGGTGA 58.501 50.000 12.58 0.00 0.00 4.02
127 128 0.622136 AGAGCTGCATCCATGGTGAA 59.378 50.000 12.58 3.21 0.00 3.18
128 129 1.214673 AGAGCTGCATCCATGGTGAAT 59.785 47.619 12.58 0.00 0.00 2.57
129 130 1.607628 GAGCTGCATCCATGGTGAATC 59.392 52.381 12.58 0.00 0.00 2.52
130 131 0.309922 GCTGCATCCATGGTGAATCG 59.690 55.000 12.58 0.00 0.00 3.34
131 132 0.309922 CTGCATCCATGGTGAATCGC 59.690 55.000 12.58 7.18 0.00 4.58
132 133 1.280746 GCATCCATGGTGAATCGCG 59.719 57.895 12.58 0.00 0.00 5.87
133 134 1.280746 CATCCATGGTGAATCGCGC 59.719 57.895 12.58 0.00 0.00 6.86
141 142 2.384899 GGTGAATCGCGCCTAAAATC 57.615 50.000 0.00 0.00 44.03 2.17
142 143 1.668751 GGTGAATCGCGCCTAAAATCA 59.331 47.619 0.00 0.00 44.03 2.57
143 144 2.096819 GGTGAATCGCGCCTAAAATCAA 59.903 45.455 0.00 0.00 44.03 2.57
144 145 3.243068 GGTGAATCGCGCCTAAAATCAAT 60.243 43.478 0.00 0.00 44.03 2.57
145 146 3.725740 GTGAATCGCGCCTAAAATCAATG 59.274 43.478 0.00 0.00 0.00 2.82
146 147 3.243035 TGAATCGCGCCTAAAATCAATGG 60.243 43.478 0.00 0.00 0.00 3.16
147 148 1.745232 TCGCGCCTAAAATCAATGGT 58.255 45.000 0.00 0.00 0.00 3.55
148 149 1.400142 TCGCGCCTAAAATCAATGGTG 59.600 47.619 0.00 0.00 0.00 4.17
149 150 1.533756 CGCGCCTAAAATCAATGGTGG 60.534 52.381 0.00 0.00 0.00 4.61
150 151 1.476488 GCGCCTAAAATCAATGGTGGT 59.524 47.619 0.00 0.00 0.00 4.16
151 152 2.094234 GCGCCTAAAATCAATGGTGGTT 60.094 45.455 0.00 0.00 0.00 3.67
152 153 3.510719 CGCCTAAAATCAATGGTGGTTG 58.489 45.455 0.00 0.00 0.00 3.77
153 154 3.056891 CGCCTAAAATCAATGGTGGTTGT 60.057 43.478 0.00 0.00 0.00 3.32
154 155 4.244862 GCCTAAAATCAATGGTGGTTGTG 58.755 43.478 0.00 0.00 0.00 3.33
155 156 4.021544 GCCTAAAATCAATGGTGGTTGTGA 60.022 41.667 0.00 0.00 0.00 3.58
156 157 5.337491 GCCTAAAATCAATGGTGGTTGTGAT 60.337 40.000 0.00 0.00 32.09 3.06
157 158 6.101332 CCTAAAATCAATGGTGGTTGTGATG 58.899 40.000 0.00 0.00 31.20 3.07
158 159 3.598019 AATCAATGGTGGTTGTGATGC 57.402 42.857 0.00 0.00 31.20 3.91
159 160 1.992538 TCAATGGTGGTTGTGATGCA 58.007 45.000 0.00 0.00 0.00 3.96
160 161 2.314246 TCAATGGTGGTTGTGATGCAA 58.686 42.857 0.00 0.00 34.16 4.08
161 162 2.898612 TCAATGGTGGTTGTGATGCAAT 59.101 40.909 0.00 0.00 39.55 3.56
162 163 3.056678 TCAATGGTGGTTGTGATGCAATC 60.057 43.478 0.00 0.00 45.83 2.67
163 164 2.291209 TGGTGGTTGTGATGCAATCT 57.709 45.000 0.00 0.00 45.81 2.40
164 165 2.596346 TGGTGGTTGTGATGCAATCTT 58.404 42.857 0.00 0.00 45.81 2.40
165 166 2.296752 TGGTGGTTGTGATGCAATCTTG 59.703 45.455 0.00 0.00 45.81 3.02
166 167 2.557924 GGTGGTTGTGATGCAATCTTGA 59.442 45.455 0.00 0.00 45.81 3.02
167 168 3.568538 GTGGTTGTGATGCAATCTTGAC 58.431 45.455 0.00 0.00 45.81 3.18
168 169 2.226200 TGGTTGTGATGCAATCTTGACG 59.774 45.455 0.00 0.00 45.81 4.35
169 170 2.414559 GGTTGTGATGCAATCTTGACGG 60.415 50.000 0.00 0.00 45.81 4.79
170 171 2.470983 TGTGATGCAATCTTGACGGA 57.529 45.000 0.00 0.00 45.81 4.69
171 172 2.076100 TGTGATGCAATCTTGACGGAC 58.924 47.619 0.00 0.00 45.81 4.79
172 173 2.076100 GTGATGCAATCTTGACGGACA 58.924 47.619 0.00 0.00 45.81 4.02
173 174 2.094894 GTGATGCAATCTTGACGGACAG 59.905 50.000 0.00 0.00 45.81 3.51
174 175 1.667724 GATGCAATCTTGACGGACAGG 59.332 52.381 0.00 0.00 41.17 4.00
175 176 0.321564 TGCAATCTTGACGGACAGGG 60.322 55.000 0.00 0.00 0.00 4.45
176 177 1.026718 GCAATCTTGACGGACAGGGG 61.027 60.000 0.00 0.00 0.00 4.79
177 178 1.026718 CAATCTTGACGGACAGGGGC 61.027 60.000 0.00 0.00 0.00 5.80
178 179 2.521958 AATCTTGACGGACAGGGGCG 62.522 60.000 0.00 0.00 0.00 6.13
179 180 4.760047 CTTGACGGACAGGGGCGG 62.760 72.222 0.00 0.00 0.00 6.13
182 183 4.754667 GACGGACAGGGGCGGAAC 62.755 72.222 0.00 0.00 0.00 3.62
185 186 4.097361 GGACAGGGGCGGAACCTC 62.097 72.222 0.00 0.00 40.54 3.85
192 193 4.493747 GGCGGAACCTCGTCGGAG 62.494 72.222 0.00 0.00 40.14 4.63
194 195 3.441290 CGGAACCTCGTCGGAGCT 61.441 66.667 0.00 0.00 39.06 4.09
195 196 2.490685 GGAACCTCGTCGGAGCTC 59.509 66.667 4.71 4.71 39.06 4.09
196 197 2.100603 GAACCTCGTCGGAGCTCG 59.899 66.667 7.83 3.33 39.06 5.03
197 198 4.117661 AACCTCGTCGGAGCTCGC 62.118 66.667 7.83 0.00 39.06 5.03
218 219 3.187058 GCATGGCCACAACTACGG 58.813 61.111 8.16 0.00 0.00 4.02
223 224 2.746277 GCCACAACTACGGCCAGG 60.746 66.667 2.24 0.00 42.82 4.45
224 225 3.065306 CCACAACTACGGCCAGGA 58.935 61.111 2.24 0.00 0.00 3.86
225 226 1.079127 CCACAACTACGGCCAGGAG 60.079 63.158 2.24 4.18 36.66 3.69
226 227 1.079127 CACAACTACGGCCAGGAGG 60.079 63.158 2.24 0.00 34.15 4.30
227 228 2.291043 ACAACTACGGCCAGGAGGG 61.291 63.158 2.24 1.59 34.15 4.30
228 229 2.687566 AACTACGGCCAGGAGGGG 60.688 66.667 2.24 0.00 34.15 4.79
229 230 4.798682 ACTACGGCCAGGAGGGGG 62.799 72.222 2.24 0.00 34.15 5.40
230 231 4.798682 CTACGGCCAGGAGGGGGT 62.799 72.222 2.24 0.00 37.04 4.95
237 238 3.706373 CAGGAGGGGGTGACGGTG 61.706 72.222 0.00 0.00 0.00 4.94
238 239 4.250170 AGGAGGGGGTGACGGTGT 62.250 66.667 0.00 0.00 0.00 4.16
239 240 4.016706 GGAGGGGGTGACGGTGTG 62.017 72.222 0.00 0.00 0.00 3.82
240 241 4.699522 GAGGGGGTGACGGTGTGC 62.700 72.222 0.00 0.00 0.00 4.57
244 245 4.250305 GGGTGACGGTGTGCCTGT 62.250 66.667 0.00 0.00 0.00 4.00
245 246 2.972505 GGTGACGGTGTGCCTGTG 60.973 66.667 0.00 0.00 0.00 3.66
246 247 2.972505 GTGACGGTGTGCCTGTGG 60.973 66.667 0.00 0.00 0.00 4.17
247 248 4.248842 TGACGGTGTGCCTGTGGG 62.249 66.667 0.00 0.00 0.00 4.61
250 251 4.704833 CGGTGTGCCTGTGGGGAG 62.705 72.222 0.00 0.00 37.23 4.30
257 258 3.625897 CCTGTGGGGAGCGTGTGA 61.626 66.667 0.00 0.00 37.23 3.58
258 259 2.425592 CTGTGGGGAGCGTGTGAA 59.574 61.111 0.00 0.00 0.00 3.18
259 260 1.003355 CTGTGGGGAGCGTGTGAAT 60.003 57.895 0.00 0.00 0.00 2.57
260 261 1.003839 TGTGGGGAGCGTGTGAATC 60.004 57.895 0.00 0.00 0.00 2.52
261 262 1.745489 GTGGGGAGCGTGTGAATCC 60.745 63.158 0.00 0.00 0.00 3.01
263 264 2.124695 GGGAGCGTGTGAATCCCC 60.125 66.667 0.00 0.00 46.03 4.81
264 265 2.670148 GGGAGCGTGTGAATCCCCT 61.670 63.158 0.00 0.00 46.03 4.79
265 266 1.299976 GGAGCGTGTGAATCCCCTT 59.700 57.895 0.00 0.00 0.00 3.95
266 267 0.744771 GGAGCGTGTGAATCCCCTTC 60.745 60.000 0.00 0.00 0.00 3.46
267 268 0.250513 GAGCGTGTGAATCCCCTTCT 59.749 55.000 0.00 0.00 34.75 2.85
268 269 0.693049 AGCGTGTGAATCCCCTTCTT 59.307 50.000 0.00 0.00 34.75 2.52
269 270 0.804989 GCGTGTGAATCCCCTTCTTG 59.195 55.000 0.00 0.00 34.75 3.02
270 271 1.882352 GCGTGTGAATCCCCTTCTTGT 60.882 52.381 0.00 0.00 34.75 3.16
271 272 1.806542 CGTGTGAATCCCCTTCTTGTG 59.193 52.381 0.00 0.00 34.75 3.33
272 273 2.810400 CGTGTGAATCCCCTTCTTGTGT 60.810 50.000 0.00 0.00 34.75 3.72
273 274 2.554032 GTGTGAATCCCCTTCTTGTGTG 59.446 50.000 0.00 0.00 34.75 3.82
274 275 1.541588 GTGAATCCCCTTCTTGTGTGC 59.458 52.381 0.00 0.00 34.75 4.57
275 276 0.804989 GAATCCCCTTCTTGTGTGCG 59.195 55.000 0.00 0.00 0.00 5.34
276 277 0.609131 AATCCCCTTCTTGTGTGCGG 60.609 55.000 0.00 0.00 0.00 5.69
277 278 2.484287 ATCCCCTTCTTGTGTGCGGG 62.484 60.000 0.00 0.00 34.62 6.13
278 279 2.429930 CCCTTCTTGTGTGCGGGA 59.570 61.111 0.00 0.00 37.05 5.14
279 280 1.672356 CCCTTCTTGTGTGCGGGAG 60.672 63.158 0.00 0.00 37.05 4.30
280 281 1.071471 CCTTCTTGTGTGCGGGAGT 59.929 57.895 0.00 0.00 0.00 3.85
281 282 1.230635 CCTTCTTGTGTGCGGGAGTG 61.231 60.000 0.00 0.00 0.00 3.51
282 283 0.249868 CTTCTTGTGTGCGGGAGTGA 60.250 55.000 0.00 0.00 0.00 3.41
283 284 0.249868 TTCTTGTGTGCGGGAGTGAG 60.250 55.000 0.00 0.00 0.00 3.51
284 285 1.112916 TCTTGTGTGCGGGAGTGAGA 61.113 55.000 0.00 0.00 0.00 3.27
285 286 0.249868 CTTGTGTGCGGGAGTGAGAA 60.250 55.000 0.00 0.00 0.00 2.87
286 287 0.249868 TTGTGTGCGGGAGTGAGAAG 60.250 55.000 0.00 0.00 0.00 2.85
287 288 1.374758 GTGTGCGGGAGTGAGAAGG 60.375 63.158 0.00 0.00 0.00 3.46
288 289 1.533033 TGTGCGGGAGTGAGAAGGA 60.533 57.895 0.00 0.00 0.00 3.36
289 290 1.118965 TGTGCGGGAGTGAGAAGGAA 61.119 55.000 0.00 0.00 0.00 3.36
290 291 0.390472 GTGCGGGAGTGAGAAGGAAG 60.390 60.000 0.00 0.00 0.00 3.46
291 292 0.541998 TGCGGGAGTGAGAAGGAAGA 60.542 55.000 0.00 0.00 0.00 2.87
292 293 0.108567 GCGGGAGTGAGAAGGAAGAC 60.109 60.000 0.00 0.00 0.00 3.01
293 294 0.171455 CGGGAGTGAGAAGGAAGACG 59.829 60.000 0.00 0.00 0.00 4.18
294 295 0.533032 GGGAGTGAGAAGGAAGACGG 59.467 60.000 0.00 0.00 0.00 4.79
295 296 0.533032 GGAGTGAGAAGGAAGACGGG 59.467 60.000 0.00 0.00 0.00 5.28
296 297 0.533032 GAGTGAGAAGGAAGACGGGG 59.467 60.000 0.00 0.00 0.00 5.73
297 298 0.114560 AGTGAGAAGGAAGACGGGGA 59.885 55.000 0.00 0.00 0.00 4.81
298 299 0.974383 GTGAGAAGGAAGACGGGGAA 59.026 55.000 0.00 0.00 0.00 3.97
299 300 1.066787 GTGAGAAGGAAGACGGGGAAG 60.067 57.143 0.00 0.00 0.00 3.46
300 301 0.537653 GAGAAGGAAGACGGGGAAGG 59.462 60.000 0.00 0.00 0.00 3.46
301 302 0.910088 AGAAGGAAGACGGGGAAGGG 60.910 60.000 0.00 0.00 0.00 3.95
302 303 0.908180 GAAGGAAGACGGGGAAGGGA 60.908 60.000 0.00 0.00 0.00 4.20
303 304 0.910088 AAGGAAGACGGGGAAGGGAG 60.910 60.000 0.00 0.00 0.00 4.30
304 305 2.368011 GGAAGACGGGGAAGGGAGG 61.368 68.421 0.00 0.00 0.00 4.30
305 306 1.305887 GAAGACGGGGAAGGGAGGA 60.306 63.158 0.00 0.00 0.00 3.71
306 307 0.908180 GAAGACGGGGAAGGGAGGAA 60.908 60.000 0.00 0.00 0.00 3.36
307 308 0.910088 AAGACGGGGAAGGGAGGAAG 60.910 60.000 0.00 0.00 0.00 3.46
308 309 1.305887 GACGGGGAAGGGAGGAAGA 60.306 63.158 0.00 0.00 0.00 2.87
309 310 1.612739 ACGGGGAAGGGAGGAAGAC 60.613 63.158 0.00 0.00 0.00 3.01
310 311 1.612442 CGGGGAAGGGAGGAAGACA 60.612 63.158 0.00 0.00 0.00 3.41
311 312 1.198759 CGGGGAAGGGAGGAAGACAA 61.199 60.000 0.00 0.00 0.00 3.18
312 313 0.621082 GGGGAAGGGAGGAAGACAAG 59.379 60.000 0.00 0.00 0.00 3.16
313 314 1.657804 GGGAAGGGAGGAAGACAAGA 58.342 55.000 0.00 0.00 0.00 3.02
314 315 2.200955 GGGAAGGGAGGAAGACAAGAT 58.799 52.381 0.00 0.00 0.00 2.40
315 316 2.092699 GGGAAGGGAGGAAGACAAGATG 60.093 54.545 0.00 0.00 0.00 2.90
316 317 2.840651 GGAAGGGAGGAAGACAAGATGA 59.159 50.000 0.00 0.00 0.00 2.92
317 318 3.118445 GGAAGGGAGGAAGACAAGATGAG 60.118 52.174 0.00 0.00 0.00 2.90
318 319 3.481559 AGGGAGGAAGACAAGATGAGA 57.518 47.619 0.00 0.00 0.00 3.27
319 320 4.006247 AGGGAGGAAGACAAGATGAGAT 57.994 45.455 0.00 0.00 0.00 2.75
320 321 3.966665 AGGGAGGAAGACAAGATGAGATC 59.033 47.826 0.00 0.00 0.00 2.75
321 322 3.966665 GGGAGGAAGACAAGATGAGATCT 59.033 47.826 0.00 0.00 42.61 2.75
334 335 6.767524 AGATGAGATCTTACAGTTCTCGTT 57.232 37.500 0.00 0.00 41.63 3.85
335 336 7.164230 AGATGAGATCTTACAGTTCTCGTTT 57.836 36.000 0.00 1.46 41.63 3.60
336 337 7.607250 AGATGAGATCTTACAGTTCTCGTTTT 58.393 34.615 0.00 0.10 41.63 2.43
337 338 8.091449 AGATGAGATCTTACAGTTCTCGTTTTT 58.909 33.333 0.00 0.00 41.63 1.94
355 356 2.791347 TTTAAATCGGGTGGCTAGCA 57.209 45.000 18.24 0.00 0.00 3.49
356 357 2.325583 TTAAATCGGGTGGCTAGCAG 57.674 50.000 18.24 0.00 0.00 4.24
357 358 1.200519 TAAATCGGGTGGCTAGCAGT 58.799 50.000 18.24 0.00 0.00 4.40
358 359 1.200519 AAATCGGGTGGCTAGCAGTA 58.799 50.000 18.24 0.00 0.00 2.74
359 360 0.753262 AATCGGGTGGCTAGCAGTAG 59.247 55.000 18.24 3.61 0.00 2.57
360 361 0.106167 ATCGGGTGGCTAGCAGTAGA 60.106 55.000 18.24 9.17 0.00 2.59
361 362 1.035932 TCGGGTGGCTAGCAGTAGAC 61.036 60.000 18.24 4.42 34.38 2.59
362 363 1.823976 GGGTGGCTAGCAGTAGACC 59.176 63.158 18.24 12.90 32.47 3.85
363 364 1.437986 GGTGGCTAGCAGTAGACCG 59.562 63.158 18.24 0.00 32.47 4.79
364 365 1.437986 GTGGCTAGCAGTAGACCGG 59.562 63.158 18.24 0.00 32.47 5.28
365 366 2.417936 GGCTAGCAGTAGACCGGC 59.582 66.667 18.24 0.00 0.00 6.13
366 367 2.026301 GCTAGCAGTAGACCGGCG 59.974 66.667 10.63 0.00 0.00 6.46
367 368 2.722487 CTAGCAGTAGACCGGCGG 59.278 66.667 27.06 27.06 0.00 6.13
368 369 1.822613 CTAGCAGTAGACCGGCGGA 60.823 63.158 35.78 7.50 0.00 5.54
369 370 1.378911 TAGCAGTAGACCGGCGGAA 60.379 57.895 35.78 14.89 0.00 4.30
370 371 0.754217 TAGCAGTAGACCGGCGGAAT 60.754 55.000 35.78 22.26 0.00 3.01
371 372 1.883084 GCAGTAGACCGGCGGAATG 60.883 63.158 35.78 20.92 0.00 2.67
372 373 1.515954 CAGTAGACCGGCGGAATGT 59.484 57.895 35.78 12.73 0.00 2.71
373 374 0.108329 CAGTAGACCGGCGGAATGTT 60.108 55.000 35.78 9.95 0.00 2.71
374 375 0.611714 AGTAGACCGGCGGAATGTTT 59.388 50.000 35.78 9.01 0.00 2.83
375 376 0.725117 GTAGACCGGCGGAATGTTTG 59.275 55.000 35.78 2.92 0.00 2.93
376 377 0.391927 TAGACCGGCGGAATGTTTGG 60.392 55.000 35.78 2.05 0.00 3.28
377 378 2.675075 ACCGGCGGAATGTTTGGG 60.675 61.111 35.78 1.17 0.00 4.12
378 379 4.128388 CCGGCGGAATGTTTGGGC 62.128 66.667 24.41 0.00 0.00 5.36
379 380 4.128388 CGGCGGAATGTTTGGGCC 62.128 66.667 0.00 0.00 40.36 5.80
380 381 4.128388 GGCGGAATGTTTGGGCCG 62.128 66.667 0.00 0.00 46.14 6.13
381 382 4.128388 GCGGAATGTTTGGGCCGG 62.128 66.667 0.00 0.00 43.73 6.13
382 383 4.128388 CGGAATGTTTGGGCCGGC 62.128 66.667 21.18 21.18 40.08 6.13
383 384 4.128388 GGAATGTTTGGGCCGGCG 62.128 66.667 22.54 0.00 0.00 6.46
384 385 3.370231 GAATGTTTGGGCCGGCGT 61.370 61.111 22.54 0.00 0.00 5.68
385 386 2.915137 AATGTTTGGGCCGGCGTT 60.915 55.556 22.54 3.31 0.00 4.84
386 387 1.587933 GAATGTTTGGGCCGGCGTTA 61.588 55.000 22.54 6.01 0.00 3.18
387 388 0.968393 AATGTTTGGGCCGGCGTTAT 60.968 50.000 22.54 5.88 0.00 1.89
388 389 1.381165 ATGTTTGGGCCGGCGTTATC 61.381 55.000 22.54 11.34 0.00 1.75
389 390 2.820479 TTTGGGCCGGCGTTATCG 60.820 61.111 22.54 0.00 40.37 2.92
449 457 3.591835 CGCACAAAACCACGCCCT 61.592 61.111 0.00 0.00 0.00 5.19
560 568 0.621082 CCAGAACCTTCCCCTCCTTC 59.379 60.000 0.00 0.00 0.00 3.46
738 1089 3.068064 GCCACCACAAATCCCCCG 61.068 66.667 0.00 0.00 0.00 5.73
739 1090 2.760477 CCACCACAAATCCCCCGA 59.240 61.111 0.00 0.00 0.00 5.14
741 1092 0.324275 CCACCACAAATCCCCCGAAT 60.324 55.000 0.00 0.00 0.00 3.34
742 1093 1.064314 CCACCACAAATCCCCCGAATA 60.064 52.381 0.00 0.00 0.00 1.75
743 1094 2.424234 CCACCACAAATCCCCCGAATAT 60.424 50.000 0.00 0.00 0.00 1.28
745 1096 3.317993 CACCACAAATCCCCCGAATATTC 59.682 47.826 5.30 5.30 0.00 1.75
746 1097 3.053245 ACCACAAATCCCCCGAATATTCA 60.053 43.478 15.57 0.00 0.00 2.57
753 1104 1.435256 CCCCGAATATTCACCTCCCT 58.565 55.000 15.57 0.00 0.00 4.20
762 1113 2.434359 CACCTCCCTTCGCGAACC 60.434 66.667 19.38 0.00 0.00 3.62
791 1142 3.211865 GGCCTCTATAAAGAAAACCGGG 58.788 50.000 6.32 0.00 0.00 5.73
844 1195 3.590466 AAAGCCAAGCCCATCGCCT 62.590 57.895 0.00 0.00 38.78 5.52
919 1271 4.423209 GGTGAGCCCTCTCCCCCT 62.423 72.222 5.31 0.00 38.58 4.79
922 1274 4.890306 GAGCCCTCTCCCCCTCCC 62.890 77.778 0.00 0.00 33.19 4.30
973 1329 4.796231 CGGGCCGAACTCTGACCG 62.796 72.222 24.41 0.73 44.96 4.79
990 1350 4.135493 GCTCGCGGCGTCTGTTTC 62.135 66.667 22.90 1.39 0.00 2.78
992 1352 4.634133 TCGCGGCGTCTGTTTCGT 62.634 61.111 22.90 0.00 0.00 3.85
1281 1643 7.170393 AGAAGTTGGCCTTGGATTTATTTAC 57.830 36.000 3.32 0.00 32.03 2.01
1305 1667 2.103094 GGATCGGATGTGTGATTCCTGA 59.897 50.000 0.00 0.00 0.00 3.86
1306 1668 3.244353 GGATCGGATGTGTGATTCCTGAT 60.244 47.826 0.00 0.00 32.09 2.90
1331 1693 1.375523 GGATGCGGTCGAGTGGTTT 60.376 57.895 0.00 0.00 0.00 3.27
1356 1719 4.456911 GTGTCATCATTTTGAGCTCCAGAA 59.543 41.667 12.15 3.58 0.00 3.02
1500 1974 4.236935 GTTTGTTACATGCAAGGATGTGG 58.763 43.478 16.11 0.00 37.16 4.17
1514 1988 2.610232 GGATGTGGACATGTGGCAAAAC 60.610 50.000 1.15 0.00 36.57 2.43
1548 2022 3.623060 TGCTCTCAGTTAATTTCGCATCC 59.377 43.478 0.00 0.00 0.00 3.51
1574 2048 7.010023 GCAAGTCTGTAATTTAAAGTCAGTCG 58.990 38.462 13.10 0.00 0.00 4.18
1750 2395 9.874215 GTACTCATCATTGTAATCATGAACATG 57.126 33.333 0.00 8.31 40.09 3.21
1841 2498 4.566759 GCCAACTTGTTCCTTTTTCACTTC 59.433 41.667 0.00 0.00 0.00 3.01
1863 2520 8.576442 ACTTCTAACAGATTTGGTGGTTAATTG 58.424 33.333 0.00 0.00 0.00 2.32
1865 2522 8.472007 TCTAACAGATTTGGTGGTTAATTGTT 57.528 30.769 0.00 0.00 0.00 2.83
1881 2538 7.406553 GTTAATTGTTTTCCTCTGCCAAAAAC 58.593 34.615 0.00 0.00 41.19 2.43
1885 2542 4.142049 TGTTTTCCTCTGCCAAAAACGAAT 60.142 37.500 0.00 0.00 42.82 3.34
1889 2546 2.351738 CCTCTGCCAAAAACGAATGTCC 60.352 50.000 0.00 0.00 0.00 4.02
1899 2556 5.514274 AAAACGAATGTCCTCAATTGTGT 57.486 34.783 5.13 0.00 0.00 3.72
1904 2561 5.529430 ACGAATGTCCTCAATTGTGTTTGTA 59.471 36.000 5.13 0.00 0.00 2.41
1914 2571 7.043458 CCTCAATTGTGTTTGTACATTGTTGTC 60.043 37.037 5.13 0.00 37.28 3.18
1915 2572 6.754209 TCAATTGTGTTTGTACATTGTTGTCC 59.246 34.615 5.13 0.00 37.28 4.02
1926 2583 6.650807 TGTACATTGTTGTCCTCTGATTCTTC 59.349 38.462 0.00 0.00 37.28 2.87
1962 2635 3.636282 AAACGCACCTCCACATTAAAC 57.364 42.857 0.00 0.00 0.00 2.01
1964 2637 1.153353 CGCACCTCCACATTAAACGT 58.847 50.000 0.00 0.00 0.00 3.99
1980 2653 6.912203 TTAAACGTCTGACATTCAGTGAAA 57.088 33.333 10.14 0.00 44.58 2.69
1989 2662 8.323140 GTCTGACATTCAGTGAAATTTTTGTTG 58.677 33.333 10.14 3.54 44.58 3.33
1990 2663 8.249638 TCTGACATTCAGTGAAATTTTTGTTGA 58.750 29.630 10.14 8.79 44.58 3.18
1991 2664 8.945481 TGACATTCAGTGAAATTTTTGTTGAT 57.055 26.923 10.14 0.00 0.00 2.57
1992 2665 8.819015 TGACATTCAGTGAAATTTTTGTTGATG 58.181 29.630 10.14 1.55 0.00 3.07
1997 2673 7.202526 TCAGTGAAATTTTTGTTGATGGTCTC 58.797 34.615 0.00 0.00 0.00 3.36
2181 2913 4.214545 TCACCTAAACTTACATTGCCAACG 59.785 41.667 0.00 0.00 0.00 4.10
2185 2917 6.015772 ACCTAAACTTACATTGCCAACGAAAT 60.016 34.615 0.00 0.00 0.00 2.17
2196 2928 7.540745 ACATTGCCAACGAAATACTTTATGTTC 59.459 33.333 0.00 0.00 0.00 3.18
2197 2929 5.623335 TGCCAACGAAATACTTTATGTTCG 58.377 37.500 3.32 3.32 46.27 3.95
2200 2932 6.245724 CCAACGAAATACTTTATGTTCGGAC 58.754 40.000 9.19 0.00 45.39 4.79
2205 2937 8.013378 ACGAAATACTTTATGTTCGGACTTTTG 58.987 33.333 9.19 0.00 45.39 2.44
2210 2942 6.677913 ACTTTATGTTCGGACTTTTGGATTG 58.322 36.000 0.00 0.00 0.00 2.67
2219 2951 4.876107 CGGACTTTTGGATTGCTAGTGTAT 59.124 41.667 0.00 0.00 0.00 2.29
2220 2952 5.354234 CGGACTTTTGGATTGCTAGTGTATT 59.646 40.000 0.00 0.00 0.00 1.89
2221 2953 6.555315 GGACTTTTGGATTGCTAGTGTATTG 58.445 40.000 0.00 0.00 0.00 1.90
2222 2954 6.151144 GGACTTTTGGATTGCTAGTGTATTGT 59.849 38.462 0.00 0.00 0.00 2.71
2223 2955 7.145932 ACTTTTGGATTGCTAGTGTATTGTC 57.854 36.000 0.00 0.00 0.00 3.18
2224 2956 6.942576 ACTTTTGGATTGCTAGTGTATTGTCT 59.057 34.615 0.00 0.00 0.00 3.41
2225 2957 6.985188 TTTGGATTGCTAGTGTATTGTCTC 57.015 37.500 0.00 0.00 0.00 3.36
2226 2958 5.675684 TGGATTGCTAGTGTATTGTCTCA 57.324 39.130 0.00 0.00 0.00 3.27
2227 2959 6.048732 TGGATTGCTAGTGTATTGTCTCAA 57.951 37.500 0.00 0.00 0.00 3.02
2241 2973 6.923199 ATTGTCTCAACCAATCCAGATTTT 57.077 33.333 0.00 0.00 0.00 1.82
2295 3029 3.767131 TCACCTGATATGACGAGGAACAA 59.233 43.478 0.00 0.00 0.00 2.83
2422 3156 2.224606 TCAGCTTGAAGCCTCTTGTTG 58.775 47.619 14.45 3.73 43.77 3.33
2488 3222 5.815581 TGATAGTACCTTGCAATTCTGGTT 58.184 37.500 12.78 0.07 34.33 3.67
2718 3456 7.023575 CAGTTGCTGACCTTTATGTAAATGAC 58.976 38.462 0.00 0.00 32.44 3.06
2754 3492 2.240667 ACATAGGGCTCATGCTTCAACT 59.759 45.455 0.00 0.00 39.59 3.16
2854 3654 4.870123 TTCCTGCACATTATTTGCTTGT 57.130 36.364 4.93 0.00 40.86 3.16
2904 3819 3.187227 GTGTGCAAGTCAGTACATTGGAG 59.813 47.826 0.00 0.00 36.53 3.86
2923 3838 6.985188 TGGAGCAAGTATATTTCAGAACAC 57.015 37.500 0.00 0.00 0.00 3.32
2925 3840 6.595326 TGGAGCAAGTATATTTCAGAACACAG 59.405 38.462 0.00 0.00 0.00 3.66
3027 3942 1.548081 CTGCCATTGTTGGTGGATCA 58.452 50.000 0.00 0.00 45.57 2.92
3293 4208 7.201478 CGAAAGCAAGGTTTGTTCATTTTACAA 60.201 33.333 1.53 0.00 33.92 2.41
3329 4244 6.480320 CCTTGTGATAGCACTTTATACTCCAC 59.520 42.308 13.05 0.00 45.36 4.02
3369 4287 3.686726 GGCTCTCAGTGTAATTCAACTGG 59.313 47.826 16.38 9.87 0.00 4.00
3394 4312 6.700352 CATTTGTCCCCAAAACATGATTAGT 58.300 36.000 0.00 0.00 43.43 2.24
3506 4425 3.766051 GCCCAGATTCCATCAAGACTTTT 59.234 43.478 0.00 0.00 0.00 2.27
3648 4574 7.359262 TCTATCTCGTATTTGTTGTTGTTGG 57.641 36.000 0.00 0.00 0.00 3.77
3676 4602 0.034059 ACTGTCCTTTGTCTCAGGCG 59.966 55.000 0.00 0.00 32.92 5.52
3793 4719 2.096496 CGACAAGATGAGCCACATTTCC 59.904 50.000 0.00 0.00 39.56 3.13
3841 4767 3.342477 GAAGGCAAGCCCCTCCCT 61.342 66.667 7.62 0.00 32.93 4.20
4034 4966 3.678056 TTATCAACTTCCTCTGTGCGT 57.322 42.857 0.00 0.00 0.00 5.24
4088 5020 5.200483 CCCTGTGGATGTGTATGGTTTTAT 58.800 41.667 0.00 0.00 0.00 1.40
4093 5025 5.356751 GTGGATGTGTATGGTTTTATGCTCA 59.643 40.000 0.00 0.00 0.00 4.26
4094 5026 5.948758 TGGATGTGTATGGTTTTATGCTCAA 59.051 36.000 0.00 0.00 0.00 3.02
4095 5027 6.435591 TGGATGTGTATGGTTTTATGCTCAAA 59.564 34.615 0.00 0.00 0.00 2.69
4104 5036 6.503524 TGGTTTTATGCTCAAAGTCTTTGTC 58.496 36.000 21.81 15.82 41.36 3.18
4122 5054 0.034896 TCTCCGGTTTCCTTCTGTGC 59.965 55.000 0.00 0.00 0.00 4.57
4133 5065 1.534595 CCTTCTGTGCTGTTTGCTCTC 59.465 52.381 0.00 0.00 43.37 3.20
4171 5104 1.678728 CCTTGTCATGTACCGCCATGT 60.679 52.381 0.00 0.00 42.29 3.21
4184 5119 3.192633 ACCGCCATGTTTTACAAGAATCC 59.807 43.478 0.00 0.00 0.00 3.01
4204 5139 9.451002 AGAATCCTCATGATGATAAATTAGCAG 57.549 33.333 13.12 0.00 32.68 4.24
4237 5202 1.948104 GCATTAGGCGTACACATGGA 58.052 50.000 0.00 0.00 0.00 3.41
4239 5204 1.858458 CATTAGGCGTACACATGGACG 59.142 52.381 12.38 12.38 41.97 4.79
4240 5205 0.173935 TTAGGCGTACACATGGACGG 59.826 55.000 17.90 0.74 39.46 4.79
4241 5206 0.680601 TAGGCGTACACATGGACGGA 60.681 55.000 17.90 0.00 39.46 4.69
4242 5207 1.808390 GGCGTACACATGGACGGAC 60.808 63.158 17.90 2.48 39.46 4.79
4243 5208 1.080366 GCGTACACATGGACGGACA 60.080 57.895 17.90 0.00 39.46 4.02
4244 5209 0.459585 GCGTACACATGGACGGACAT 60.460 55.000 17.90 0.00 39.46 3.06
4252 5217 2.977914 CATGGACGGACATGTTTCTCT 58.022 47.619 0.00 0.00 42.48 3.10
4256 5221 2.996621 GGACGGACATGTTTCTCTCTTG 59.003 50.000 0.00 0.00 0.00 3.02
4257 5222 2.996621 GACGGACATGTTTCTCTCTTGG 59.003 50.000 0.00 0.00 0.00 3.61
4260 5225 3.815401 CGGACATGTTTCTCTCTTGGTTT 59.185 43.478 0.00 0.00 0.00 3.27
4261 5226 4.275936 CGGACATGTTTCTCTCTTGGTTTT 59.724 41.667 0.00 0.00 0.00 2.43
4262 5227 5.468746 CGGACATGTTTCTCTCTTGGTTTTA 59.531 40.000 0.00 0.00 0.00 1.52
4264 5229 7.530863 GGACATGTTTCTCTCTTGGTTTTATC 58.469 38.462 0.00 0.00 0.00 1.75
4265 5230 7.174946 GGACATGTTTCTCTCTTGGTTTTATCA 59.825 37.037 0.00 0.00 0.00 2.15
4266 5231 8.463930 ACATGTTTCTCTCTTGGTTTTATCAA 57.536 30.769 0.00 0.00 0.00 2.57
4277 5242 4.266714 TGGTTTTATCAATCCCGTTCTCC 58.733 43.478 0.00 0.00 0.00 3.71
4286 5251 2.583441 CCCGTTCTCCCAGTGCTGA 61.583 63.158 0.02 0.00 0.00 4.26
4288 5253 0.671781 CCGTTCTCCCAGTGCTGAAG 60.672 60.000 0.02 0.00 0.00 3.02
4290 5255 1.066573 CGTTCTCCCAGTGCTGAAGAT 60.067 52.381 0.02 0.00 0.00 2.40
4291 5256 2.354259 GTTCTCCCAGTGCTGAAGATG 58.646 52.381 0.02 0.00 0.00 2.90
4293 5258 1.552337 TCTCCCAGTGCTGAAGATGTC 59.448 52.381 0.02 0.00 0.00 3.06
4331 5438 0.907704 TTGCTCCGCCCTCCTCTTTA 60.908 55.000 0.00 0.00 0.00 1.85
4348 5455 7.596494 TCCTCTTTATCTGTTTTGATGCTTTG 58.404 34.615 0.00 0.00 0.00 2.77
4370 5477 0.109597 CCACTTTCTGAATGCACGCC 60.110 55.000 0.00 0.00 0.00 5.68
4472 5592 4.893424 CGCAAGCTAATAAAGGCCTAAA 57.107 40.909 5.16 0.00 0.00 1.85
4559 5710 5.005779 CACTTACGTATCAAAAGCTAGGCTG 59.994 44.000 0.00 0.00 39.62 4.85
4801 5952 2.552599 TGCCGACAACTCAATTACCA 57.447 45.000 0.00 0.00 0.00 3.25
4809 5960 7.241376 CCGACAACTCAATTACCAAATACTTC 58.759 38.462 0.00 0.00 0.00 3.01
4810 5961 7.094975 CCGACAACTCAATTACCAAATACTTCA 60.095 37.037 0.00 0.00 0.00 3.02
4845 5996 8.046708 TGGTATAGTTATTGCATTGTCTGTCTT 58.953 33.333 0.00 0.00 0.00 3.01
4851 6002 5.717078 ATTGCATTGTCTGTCTTGTTCAT 57.283 34.783 0.00 0.00 0.00 2.57
4868 6019 6.185852 TGTTCATCTCTTCGTAATCGTACA 57.814 37.500 0.00 0.00 38.33 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.069022 CACCATCGTGTCCAGCAAAAG 60.069 52.381 0.00 0.00 35.10 2.27
1 2 0.950836 CACCATCGTGTCCAGCAAAA 59.049 50.000 0.00 0.00 35.10 2.44
2 3 1.514678 GCACCATCGTGTCCAGCAAA 61.515 55.000 0.00 0.00 42.39 3.68
4 5 2.358615 GCACCATCGTGTCCAGCA 60.359 61.111 0.00 0.00 42.39 4.41
5 6 1.915614 CTTGCACCATCGTGTCCAGC 61.916 60.000 0.00 0.00 42.39 4.85
6 7 1.300971 CCTTGCACCATCGTGTCCAG 61.301 60.000 0.00 0.00 42.39 3.86
7 8 1.302431 CCTTGCACCATCGTGTCCA 60.302 57.895 0.00 0.00 42.39 4.02
8 9 2.690778 GCCTTGCACCATCGTGTCC 61.691 63.158 0.00 0.00 42.39 4.02
9 10 2.870372 GCCTTGCACCATCGTGTC 59.130 61.111 0.00 0.00 42.39 3.67
10 11 3.049674 CGCCTTGCACCATCGTGT 61.050 61.111 0.00 0.00 42.39 4.49
11 12 2.741985 TCGCCTTGCACCATCGTG 60.742 61.111 0.00 0.00 43.35 4.35
12 13 2.742372 GTCGCCTTGCACCATCGT 60.742 61.111 0.00 0.00 0.00 3.73
13 14 3.853330 CGTCGCCTTGCACCATCG 61.853 66.667 0.00 0.00 0.00 3.84
14 15 2.434185 TCGTCGCCTTGCACCATC 60.434 61.111 0.00 0.00 0.00 3.51
15 16 2.742372 GTCGTCGCCTTGCACCAT 60.742 61.111 0.00 0.00 0.00 3.55
16 17 4.980805 GGTCGTCGCCTTGCACCA 62.981 66.667 0.00 0.00 0.00 4.17
37 38 2.845752 TAACCACGCATCCGGCTCAC 62.846 60.000 0.00 0.00 41.67 3.51
38 39 2.651105 TAACCACGCATCCGGCTCA 61.651 57.895 0.00 0.00 41.67 4.26
39 40 2.171725 GTAACCACGCATCCGGCTC 61.172 63.158 0.00 0.00 41.67 4.70
40 41 2.125269 GTAACCACGCATCCGGCT 60.125 61.111 0.00 0.00 41.67 5.52
41 42 3.560278 CGTAACCACGCATCCGGC 61.560 66.667 0.00 0.00 42.05 6.13
50 51 2.624636 CTACATCCCCAACGTAACCAC 58.375 52.381 0.00 0.00 0.00 4.16
51 52 1.065998 GCTACATCCCCAACGTAACCA 60.066 52.381 0.00 0.00 0.00 3.67
52 53 1.065998 TGCTACATCCCCAACGTAACC 60.066 52.381 0.00 0.00 0.00 2.85
53 54 2.389962 TGCTACATCCCCAACGTAAC 57.610 50.000 0.00 0.00 0.00 2.50
54 55 3.055021 TCATTGCTACATCCCCAACGTAA 60.055 43.478 0.00 0.00 0.00 3.18
55 56 2.502130 TCATTGCTACATCCCCAACGTA 59.498 45.455 0.00 0.00 0.00 3.57
56 57 1.280710 TCATTGCTACATCCCCAACGT 59.719 47.619 0.00 0.00 0.00 3.99
57 58 2.036958 TCATTGCTACATCCCCAACG 57.963 50.000 0.00 0.00 0.00 4.10
58 59 4.702131 GGATATCATTGCTACATCCCCAAC 59.298 45.833 4.83 0.00 30.87 3.77
59 60 4.263905 GGGATATCATTGCTACATCCCCAA 60.264 45.833 4.83 0.00 46.24 4.12
60 61 3.266772 GGGATATCATTGCTACATCCCCA 59.733 47.826 4.83 0.00 46.24 4.96
61 62 3.891049 GGGATATCATTGCTACATCCCC 58.109 50.000 4.83 0.00 46.24 4.81
63 64 3.682718 CGGGGGATATCATTGCTACATCC 60.683 52.174 4.83 0.00 35.44 3.51
64 65 3.535561 CGGGGGATATCATTGCTACATC 58.464 50.000 4.83 0.00 0.00 3.06
65 66 2.356125 GCGGGGGATATCATTGCTACAT 60.356 50.000 4.83 0.00 0.00 2.29
66 67 1.003118 GCGGGGGATATCATTGCTACA 59.997 52.381 4.83 0.00 0.00 2.74
67 68 1.739067 GCGGGGGATATCATTGCTAC 58.261 55.000 4.83 0.00 0.00 3.58
68 69 0.249120 CGCGGGGGATATCATTGCTA 59.751 55.000 4.83 0.00 0.00 3.49
69 70 1.003355 CGCGGGGGATATCATTGCT 60.003 57.895 4.83 0.00 0.00 3.91
70 71 2.690778 GCGCGGGGGATATCATTGC 61.691 63.158 8.83 2.02 0.00 3.56
71 72 2.390599 CGCGCGGGGGATATCATTG 61.391 63.158 24.84 0.00 0.00 2.82
72 73 2.047274 CGCGCGGGGGATATCATT 60.047 61.111 24.84 0.00 0.00 2.57
73 74 4.760047 GCGCGCGGGGGATATCAT 62.760 66.667 33.06 0.00 0.00 2.45
86 87 3.989698 AACGGTCAGATCCAGCGCG 62.990 63.158 0.00 0.00 38.31 6.86
87 88 1.298859 AAAACGGTCAGATCCAGCGC 61.299 55.000 12.46 0.00 38.31 5.92
88 89 1.156736 AAAAACGGTCAGATCCAGCG 58.843 50.000 11.27 11.27 40.58 5.18
89 90 3.596214 TCTAAAAACGGTCAGATCCAGC 58.404 45.455 0.00 0.00 0.00 4.85
90 91 3.619038 GCTCTAAAAACGGTCAGATCCAG 59.381 47.826 0.00 0.00 0.00 3.86
91 92 3.260884 AGCTCTAAAAACGGTCAGATCCA 59.739 43.478 0.00 0.00 0.00 3.41
92 93 3.619038 CAGCTCTAAAAACGGTCAGATCC 59.381 47.826 0.00 0.00 0.00 3.36
93 94 3.062774 GCAGCTCTAAAAACGGTCAGATC 59.937 47.826 0.00 0.00 0.00 2.75
94 95 3.003480 GCAGCTCTAAAAACGGTCAGAT 58.997 45.455 0.00 0.00 0.00 2.90
95 96 2.224185 TGCAGCTCTAAAAACGGTCAGA 60.224 45.455 0.00 0.00 0.00 3.27
96 97 2.143122 TGCAGCTCTAAAAACGGTCAG 58.857 47.619 0.00 0.00 0.00 3.51
97 98 2.248280 TGCAGCTCTAAAAACGGTCA 57.752 45.000 0.00 0.00 0.00 4.02
98 99 2.096013 GGATGCAGCTCTAAAAACGGTC 59.904 50.000 0.22 0.00 0.00 4.79
99 100 2.084546 GGATGCAGCTCTAAAAACGGT 58.915 47.619 0.22 0.00 0.00 4.83
100 101 2.083774 TGGATGCAGCTCTAAAAACGG 58.916 47.619 0.22 0.00 0.00 4.44
101 102 3.488047 CCATGGATGCAGCTCTAAAAACG 60.488 47.826 5.56 0.00 0.00 3.60
102 103 3.445096 ACCATGGATGCAGCTCTAAAAAC 59.555 43.478 21.47 0.00 0.00 2.43
103 104 3.444742 CACCATGGATGCAGCTCTAAAAA 59.555 43.478 21.47 0.00 0.00 1.94
104 105 3.018856 CACCATGGATGCAGCTCTAAAA 58.981 45.455 21.47 0.00 0.00 1.52
105 106 2.239402 TCACCATGGATGCAGCTCTAAA 59.761 45.455 21.47 0.00 0.00 1.85
106 107 1.839354 TCACCATGGATGCAGCTCTAA 59.161 47.619 21.47 0.00 0.00 2.10
107 108 1.499368 TCACCATGGATGCAGCTCTA 58.501 50.000 21.47 0.00 0.00 2.43
108 109 0.622136 TTCACCATGGATGCAGCTCT 59.378 50.000 21.47 0.00 0.00 4.09
109 110 1.607628 GATTCACCATGGATGCAGCTC 59.392 52.381 21.47 1.84 0.00 4.09
110 111 1.688772 GATTCACCATGGATGCAGCT 58.311 50.000 21.47 0.00 0.00 4.24
111 112 0.309922 CGATTCACCATGGATGCAGC 59.690 55.000 21.47 5.48 0.00 5.25
112 113 0.309922 GCGATTCACCATGGATGCAG 59.690 55.000 21.47 6.14 0.00 4.41
113 114 1.438562 CGCGATTCACCATGGATGCA 61.439 55.000 21.47 3.82 0.00 3.96
114 115 1.280746 CGCGATTCACCATGGATGC 59.719 57.895 21.47 11.18 0.00 3.91
115 116 1.280746 GCGCGATTCACCATGGATG 59.719 57.895 21.47 13.20 0.00 3.51
116 117 1.893808 GGCGCGATTCACCATGGAT 60.894 57.895 21.47 0.23 0.00 3.41
117 118 1.681486 TAGGCGCGATTCACCATGGA 61.681 55.000 21.47 0.00 0.00 3.41
118 119 0.813610 TTAGGCGCGATTCACCATGG 60.814 55.000 12.10 11.19 0.00 3.66
119 120 1.013596 TTTAGGCGCGATTCACCATG 58.986 50.000 12.10 0.00 0.00 3.66
120 121 1.745232 TTTTAGGCGCGATTCACCAT 58.255 45.000 12.10 0.00 0.00 3.55
121 122 1.668751 GATTTTAGGCGCGATTCACCA 59.331 47.619 12.10 0.00 0.00 4.17
122 123 1.668751 TGATTTTAGGCGCGATTCACC 59.331 47.619 12.10 0.00 0.00 4.02
123 124 3.398954 TTGATTTTAGGCGCGATTCAC 57.601 42.857 12.10 0.00 0.00 3.18
124 125 3.243035 CCATTGATTTTAGGCGCGATTCA 60.243 43.478 12.10 0.00 0.00 2.57
125 126 3.243068 ACCATTGATTTTAGGCGCGATTC 60.243 43.478 12.10 0.00 0.00 2.52
126 127 2.687935 ACCATTGATTTTAGGCGCGATT 59.312 40.909 12.10 0.00 0.00 3.34
127 128 2.033299 CACCATTGATTTTAGGCGCGAT 59.967 45.455 12.10 0.00 0.00 4.58
128 129 1.400142 CACCATTGATTTTAGGCGCGA 59.600 47.619 12.10 0.00 0.00 5.87
129 130 1.533756 CCACCATTGATTTTAGGCGCG 60.534 52.381 0.00 0.00 0.00 6.86
130 131 1.476488 ACCACCATTGATTTTAGGCGC 59.524 47.619 0.00 0.00 0.00 6.53
131 132 3.056891 ACAACCACCATTGATTTTAGGCG 60.057 43.478 0.00 0.00 33.57 5.52
132 133 4.021544 TCACAACCACCATTGATTTTAGGC 60.022 41.667 0.00 0.00 33.57 3.93
133 134 5.720371 TCACAACCACCATTGATTTTAGG 57.280 39.130 0.00 0.00 33.57 2.69
134 135 5.577945 GCATCACAACCACCATTGATTTTAG 59.422 40.000 0.00 0.00 33.57 1.85
135 136 5.011431 TGCATCACAACCACCATTGATTTTA 59.989 36.000 0.00 0.00 33.57 1.52
136 137 4.202336 TGCATCACAACCACCATTGATTTT 60.202 37.500 0.00 0.00 33.57 1.82
137 138 3.324268 TGCATCACAACCACCATTGATTT 59.676 39.130 0.00 0.00 33.57 2.17
138 139 2.898612 TGCATCACAACCACCATTGATT 59.101 40.909 0.00 0.00 33.57 2.57
139 140 2.527497 TGCATCACAACCACCATTGAT 58.473 42.857 0.00 0.00 33.57 2.57
140 141 1.992538 TGCATCACAACCACCATTGA 58.007 45.000 0.00 0.00 33.57 2.57
141 142 2.816204 TTGCATCACAACCACCATTG 57.184 45.000 0.00 0.00 31.73 2.82
142 143 3.167485 AGATTGCATCACAACCACCATT 58.833 40.909 0.00 0.00 42.27 3.16
143 144 2.811410 AGATTGCATCACAACCACCAT 58.189 42.857 0.00 0.00 42.27 3.55
144 145 2.291209 AGATTGCATCACAACCACCA 57.709 45.000 0.00 0.00 42.27 4.17
145 146 2.557924 TCAAGATTGCATCACAACCACC 59.442 45.455 0.00 0.00 42.27 4.61
146 147 3.568538 GTCAAGATTGCATCACAACCAC 58.431 45.455 0.00 0.00 42.27 4.16
147 148 2.226200 CGTCAAGATTGCATCACAACCA 59.774 45.455 0.00 0.00 42.27 3.67
148 149 2.414559 CCGTCAAGATTGCATCACAACC 60.415 50.000 0.00 0.00 42.27 3.77
149 150 2.483877 TCCGTCAAGATTGCATCACAAC 59.516 45.455 0.00 0.00 42.27 3.32
150 151 2.483877 GTCCGTCAAGATTGCATCACAA 59.516 45.455 0.00 0.00 44.01 3.33
151 152 2.076100 GTCCGTCAAGATTGCATCACA 58.924 47.619 0.00 0.00 0.00 3.58
152 153 2.076100 TGTCCGTCAAGATTGCATCAC 58.924 47.619 0.00 0.00 0.00 3.06
153 154 2.349590 CTGTCCGTCAAGATTGCATCA 58.650 47.619 0.00 0.00 0.00 3.07
154 155 1.667724 CCTGTCCGTCAAGATTGCATC 59.332 52.381 0.00 0.00 0.00 3.91
155 156 1.679944 CCCTGTCCGTCAAGATTGCAT 60.680 52.381 0.00 0.00 0.00 3.96
156 157 0.321564 CCCTGTCCGTCAAGATTGCA 60.322 55.000 0.00 0.00 0.00 4.08
157 158 1.026718 CCCCTGTCCGTCAAGATTGC 61.027 60.000 0.00 0.00 0.00 3.56
158 159 1.026718 GCCCCTGTCCGTCAAGATTG 61.027 60.000 0.00 0.00 0.00 2.67
159 160 1.299976 GCCCCTGTCCGTCAAGATT 59.700 57.895 0.00 0.00 0.00 2.40
160 161 2.990479 GCCCCTGTCCGTCAAGAT 59.010 61.111 0.00 0.00 0.00 2.40
161 162 3.691342 CGCCCCTGTCCGTCAAGA 61.691 66.667 0.00 0.00 0.00 3.02
162 163 4.760047 CCGCCCCTGTCCGTCAAG 62.760 72.222 0.00 0.00 0.00 3.02
165 166 4.754667 GTTCCGCCCCTGTCCGTC 62.755 72.222 0.00 0.00 0.00 4.79
168 169 4.097361 GAGGTTCCGCCCCTGTCC 62.097 72.222 0.00 0.00 38.26 4.02
169 170 4.452733 CGAGGTTCCGCCCCTGTC 62.453 72.222 0.00 0.00 38.26 3.51
171 172 4.452733 GACGAGGTTCCGCCCCTG 62.453 72.222 0.00 0.00 38.26 4.45
175 176 4.493747 CTCCGACGAGGTTCCGCC 62.494 72.222 0.00 0.00 41.99 6.13
177 178 3.398353 GAGCTCCGACGAGGTTCCG 62.398 68.421 0.87 0.00 46.79 4.30
178 179 2.490685 GAGCTCCGACGAGGTTCC 59.509 66.667 0.87 0.00 46.79 3.62
179 180 2.100603 CGAGCTCCGACGAGGTTC 59.899 66.667 8.47 0.00 46.79 3.62
180 181 4.117661 GCGAGCTCCGACGAGGTT 62.118 66.667 8.47 0.00 46.79 3.50
201 202 3.051392 GCCGTAGTTGTGGCCATGC 62.051 63.158 9.72 1.80 45.73 4.06
202 203 3.187058 GCCGTAGTTGTGGCCATG 58.813 61.111 9.72 0.00 45.73 3.66
207 208 1.079127 CTCCTGGCCGTAGTTGTGG 60.079 63.158 0.00 0.00 0.00 4.17
208 209 1.079127 CCTCCTGGCCGTAGTTGTG 60.079 63.158 0.00 0.00 0.00 3.33
209 210 2.291043 CCCTCCTGGCCGTAGTTGT 61.291 63.158 0.00 0.00 0.00 3.32
210 211 2.584608 CCCTCCTGGCCGTAGTTG 59.415 66.667 0.00 0.00 0.00 3.16
211 212 2.687566 CCCCTCCTGGCCGTAGTT 60.688 66.667 0.00 0.00 0.00 2.24
212 213 4.798682 CCCCCTCCTGGCCGTAGT 62.799 72.222 0.00 0.00 0.00 2.73
213 214 4.798682 ACCCCCTCCTGGCCGTAG 62.799 72.222 0.00 0.00 0.00 3.51
220 221 3.706373 CACCGTCACCCCCTCCTG 61.706 72.222 0.00 0.00 0.00 3.86
221 222 4.250170 ACACCGTCACCCCCTCCT 62.250 66.667 0.00 0.00 0.00 3.69
222 223 4.016706 CACACCGTCACCCCCTCC 62.017 72.222 0.00 0.00 0.00 4.30
223 224 4.699522 GCACACCGTCACCCCCTC 62.700 72.222 0.00 0.00 0.00 4.30
227 228 4.250305 ACAGGCACACCGTCACCC 62.250 66.667 0.00 0.00 42.76 4.61
228 229 2.972505 CACAGGCACACCGTCACC 60.973 66.667 0.00 0.00 42.76 4.02
229 230 2.972505 CCACAGGCACACCGTCAC 60.973 66.667 0.00 0.00 42.76 3.67
230 231 4.248842 CCCACAGGCACACCGTCA 62.249 66.667 0.00 0.00 42.76 4.35
233 234 4.704833 CTCCCCACAGGCACACCG 62.705 72.222 0.00 0.00 42.76 4.94
240 241 2.469465 ATTCACACGCTCCCCACAGG 62.469 60.000 0.00 0.00 0.00 4.00
241 242 1.003355 ATTCACACGCTCCCCACAG 60.003 57.895 0.00 0.00 0.00 3.66
242 243 1.003839 GATTCACACGCTCCCCACA 60.004 57.895 0.00 0.00 0.00 4.17
243 244 1.745489 GGATTCACACGCTCCCCAC 60.745 63.158 0.00 0.00 0.00 4.61
244 245 2.668632 GGATTCACACGCTCCCCA 59.331 61.111 0.00 0.00 0.00 4.96
245 246 2.124695 GGGATTCACACGCTCCCC 60.125 66.667 0.00 0.00 42.48 4.81
246 247 2.124695 GGGGATTCACACGCTCCC 60.125 66.667 0.00 0.00 46.74 4.30
247 248 0.744771 GAAGGGGATTCACACGCTCC 60.745 60.000 0.00 0.00 37.88 4.70
248 249 0.250513 AGAAGGGGATTCACACGCTC 59.749 55.000 0.00 0.00 40.67 5.03
249 250 0.693049 AAGAAGGGGATTCACACGCT 59.307 50.000 0.00 0.00 40.67 5.07
250 251 0.804989 CAAGAAGGGGATTCACACGC 59.195 55.000 0.00 0.00 40.67 5.34
251 252 1.806542 CACAAGAAGGGGATTCACACG 59.193 52.381 0.00 0.00 40.67 4.49
252 253 2.554032 CACACAAGAAGGGGATTCACAC 59.446 50.000 0.00 0.00 40.67 3.82
253 254 2.862541 CACACAAGAAGGGGATTCACA 58.137 47.619 0.00 0.00 40.67 3.58
254 255 1.541588 GCACACAAGAAGGGGATTCAC 59.458 52.381 0.00 0.00 40.67 3.18
255 256 1.881925 CGCACACAAGAAGGGGATTCA 60.882 52.381 0.00 0.00 40.67 2.57
256 257 0.804989 CGCACACAAGAAGGGGATTC 59.195 55.000 0.00 0.00 38.28 2.52
257 258 0.609131 CCGCACACAAGAAGGGGATT 60.609 55.000 0.00 0.00 37.54 3.01
258 259 1.002134 CCGCACACAAGAAGGGGAT 60.002 57.895 0.00 0.00 37.54 3.85
259 260 2.429930 CCGCACACAAGAAGGGGA 59.570 61.111 0.00 0.00 37.54 4.81
260 261 2.672996 CCCGCACACAAGAAGGGG 60.673 66.667 0.00 0.00 38.44 4.79
261 262 1.672356 CTCCCGCACACAAGAAGGG 60.672 63.158 0.00 0.00 43.32 3.95
262 263 1.071471 ACTCCCGCACACAAGAAGG 59.929 57.895 0.00 0.00 0.00 3.46
263 264 0.249868 TCACTCCCGCACACAAGAAG 60.250 55.000 0.00 0.00 0.00 2.85
264 265 0.249868 CTCACTCCCGCACACAAGAA 60.250 55.000 0.00 0.00 0.00 2.52
265 266 1.112916 TCTCACTCCCGCACACAAGA 61.113 55.000 0.00 0.00 0.00 3.02
266 267 0.249868 TTCTCACTCCCGCACACAAG 60.250 55.000 0.00 0.00 0.00 3.16
267 268 0.249868 CTTCTCACTCCCGCACACAA 60.250 55.000 0.00 0.00 0.00 3.33
268 269 1.367471 CTTCTCACTCCCGCACACA 59.633 57.895 0.00 0.00 0.00 3.72
269 270 1.374758 CCTTCTCACTCCCGCACAC 60.375 63.158 0.00 0.00 0.00 3.82
270 271 1.118965 TTCCTTCTCACTCCCGCACA 61.119 55.000 0.00 0.00 0.00 4.57
271 272 0.390472 CTTCCTTCTCACTCCCGCAC 60.390 60.000 0.00 0.00 0.00 5.34
272 273 0.541998 TCTTCCTTCTCACTCCCGCA 60.542 55.000 0.00 0.00 0.00 5.69
273 274 0.108567 GTCTTCCTTCTCACTCCCGC 60.109 60.000 0.00 0.00 0.00 6.13
274 275 0.171455 CGTCTTCCTTCTCACTCCCG 59.829 60.000 0.00 0.00 0.00 5.14
275 276 0.533032 CCGTCTTCCTTCTCACTCCC 59.467 60.000 0.00 0.00 0.00 4.30
276 277 0.533032 CCCGTCTTCCTTCTCACTCC 59.467 60.000 0.00 0.00 0.00 3.85
277 278 0.533032 CCCCGTCTTCCTTCTCACTC 59.467 60.000 0.00 0.00 0.00 3.51
278 279 0.114560 TCCCCGTCTTCCTTCTCACT 59.885 55.000 0.00 0.00 0.00 3.41
279 280 0.974383 TTCCCCGTCTTCCTTCTCAC 59.026 55.000 0.00 0.00 0.00 3.51
280 281 1.267121 CTTCCCCGTCTTCCTTCTCA 58.733 55.000 0.00 0.00 0.00 3.27
281 282 0.537653 CCTTCCCCGTCTTCCTTCTC 59.462 60.000 0.00 0.00 0.00 2.87
282 283 0.910088 CCCTTCCCCGTCTTCCTTCT 60.910 60.000 0.00 0.00 0.00 2.85
283 284 0.908180 TCCCTTCCCCGTCTTCCTTC 60.908 60.000 0.00 0.00 0.00 3.46
284 285 0.910088 CTCCCTTCCCCGTCTTCCTT 60.910 60.000 0.00 0.00 0.00 3.36
285 286 1.306226 CTCCCTTCCCCGTCTTCCT 60.306 63.158 0.00 0.00 0.00 3.36
286 287 2.368011 CCTCCCTTCCCCGTCTTCC 61.368 68.421 0.00 0.00 0.00 3.46
287 288 0.908180 TTCCTCCCTTCCCCGTCTTC 60.908 60.000 0.00 0.00 0.00 2.87
288 289 0.910088 CTTCCTCCCTTCCCCGTCTT 60.910 60.000 0.00 0.00 0.00 3.01
289 290 1.306226 CTTCCTCCCTTCCCCGTCT 60.306 63.158 0.00 0.00 0.00 4.18
290 291 1.305887 TCTTCCTCCCTTCCCCGTC 60.306 63.158 0.00 0.00 0.00 4.79
291 292 1.612739 GTCTTCCTCCCTTCCCCGT 60.613 63.158 0.00 0.00 0.00 5.28
292 293 1.198759 TTGTCTTCCTCCCTTCCCCG 61.199 60.000 0.00 0.00 0.00 5.73
293 294 0.621082 CTTGTCTTCCTCCCTTCCCC 59.379 60.000 0.00 0.00 0.00 4.81
294 295 1.657804 TCTTGTCTTCCTCCCTTCCC 58.342 55.000 0.00 0.00 0.00 3.97
295 296 2.840651 TCATCTTGTCTTCCTCCCTTCC 59.159 50.000 0.00 0.00 0.00 3.46
296 297 3.772025 TCTCATCTTGTCTTCCTCCCTTC 59.228 47.826 0.00 0.00 0.00 3.46
297 298 3.796111 TCTCATCTTGTCTTCCTCCCTT 58.204 45.455 0.00 0.00 0.00 3.95
298 299 3.481559 TCTCATCTTGTCTTCCTCCCT 57.518 47.619 0.00 0.00 0.00 4.20
299 300 3.966665 AGATCTCATCTTGTCTTCCTCCC 59.033 47.826 0.00 0.00 35.76 4.30
304 305 8.250332 AGAACTGTAAGATCTCATCTTGTCTTC 58.750 37.037 8.71 5.02 43.14 2.87
305 306 8.133024 AGAACTGTAAGATCTCATCTTGTCTT 57.867 34.615 8.71 0.00 43.14 3.01
306 307 7.716799 AGAACTGTAAGATCTCATCTTGTCT 57.283 36.000 8.71 0.00 43.14 3.41
334 335 3.422796 TGCTAGCCACCCGATTTAAAAA 58.577 40.909 13.29 0.00 0.00 1.94
335 336 3.013921 CTGCTAGCCACCCGATTTAAAA 58.986 45.455 13.29 0.00 0.00 1.52
336 337 2.026636 ACTGCTAGCCACCCGATTTAAA 60.027 45.455 13.29 0.00 0.00 1.52
337 338 1.557832 ACTGCTAGCCACCCGATTTAA 59.442 47.619 13.29 0.00 0.00 1.52
338 339 1.200519 ACTGCTAGCCACCCGATTTA 58.799 50.000 13.29 0.00 0.00 1.40
339 340 1.139058 CTACTGCTAGCCACCCGATTT 59.861 52.381 13.29 0.00 0.00 2.17
340 341 0.753262 CTACTGCTAGCCACCCGATT 59.247 55.000 13.29 0.00 0.00 3.34
341 342 0.106167 TCTACTGCTAGCCACCCGAT 60.106 55.000 13.29 0.00 0.00 4.18
342 343 1.035932 GTCTACTGCTAGCCACCCGA 61.036 60.000 13.29 0.00 0.00 5.14
343 344 1.437986 GTCTACTGCTAGCCACCCG 59.562 63.158 13.29 0.00 0.00 5.28
344 345 1.823976 GGTCTACTGCTAGCCACCC 59.176 63.158 13.29 0.00 0.00 4.61
345 346 1.437986 CGGTCTACTGCTAGCCACC 59.562 63.158 13.29 9.25 0.00 4.61
346 347 1.437986 CCGGTCTACTGCTAGCCAC 59.562 63.158 13.29 0.90 0.00 5.01
347 348 2.423898 GCCGGTCTACTGCTAGCCA 61.424 63.158 13.29 0.00 0.00 4.75
348 349 2.417936 GCCGGTCTACTGCTAGCC 59.582 66.667 13.29 0.00 0.00 3.93
349 350 2.026301 CGCCGGTCTACTGCTAGC 59.974 66.667 8.10 8.10 0.00 3.42
350 351 1.381928 TTCCGCCGGTCTACTGCTAG 61.382 60.000 1.63 0.00 0.00 3.42
351 352 0.754217 ATTCCGCCGGTCTACTGCTA 60.754 55.000 1.63 0.00 0.00 3.49
352 353 2.058595 ATTCCGCCGGTCTACTGCT 61.059 57.895 1.63 0.00 0.00 4.24
353 354 1.883084 CATTCCGCCGGTCTACTGC 60.883 63.158 1.63 0.00 0.00 4.40
354 355 0.108329 AACATTCCGCCGGTCTACTG 60.108 55.000 1.63 0.00 0.00 2.74
355 356 0.611714 AAACATTCCGCCGGTCTACT 59.388 50.000 1.63 0.00 0.00 2.57
356 357 0.725117 CAAACATTCCGCCGGTCTAC 59.275 55.000 1.63 0.00 0.00 2.59
357 358 0.391927 CCAAACATTCCGCCGGTCTA 60.392 55.000 1.63 0.00 0.00 2.59
358 359 1.674322 CCAAACATTCCGCCGGTCT 60.674 57.895 1.63 0.00 0.00 3.85
359 360 2.696759 CCCAAACATTCCGCCGGTC 61.697 63.158 1.63 0.00 0.00 4.79
360 361 2.675075 CCCAAACATTCCGCCGGT 60.675 61.111 1.63 0.00 0.00 5.28
361 362 4.128388 GCCCAAACATTCCGCCGG 62.128 66.667 0.00 0.00 0.00 6.13
362 363 4.128388 GGCCCAAACATTCCGCCG 62.128 66.667 0.00 0.00 0.00 6.46
363 364 4.128388 CGGCCCAAACATTCCGCC 62.128 66.667 0.00 0.00 35.20 6.13
364 365 4.128388 CCGGCCCAAACATTCCGC 62.128 66.667 0.00 0.00 40.49 5.54
365 366 4.128388 GCCGGCCCAAACATTCCG 62.128 66.667 18.11 0.00 41.41 4.30
366 367 4.128388 CGCCGGCCCAAACATTCC 62.128 66.667 23.46 0.00 0.00 3.01
367 368 1.587933 TAACGCCGGCCCAAACATTC 61.588 55.000 23.46 0.00 0.00 2.67
368 369 0.968393 ATAACGCCGGCCCAAACATT 60.968 50.000 23.46 6.50 0.00 2.71
369 370 1.379309 ATAACGCCGGCCCAAACAT 60.379 52.632 23.46 2.63 0.00 2.71
370 371 2.034376 ATAACGCCGGCCCAAACA 59.966 55.556 23.46 0.00 0.00 2.83
371 372 2.795973 GATAACGCCGGCCCAAAC 59.204 61.111 23.46 6.33 0.00 2.93
372 373 2.820479 CGATAACGCCGGCCCAAA 60.820 61.111 23.46 4.08 0.00 3.28
382 383 3.379057 ACCCTTTTTAATGGGCGATAACG 59.621 43.478 12.12 0.00 44.97 3.18
383 384 4.994907 ACCCTTTTTAATGGGCGATAAC 57.005 40.909 12.12 0.00 44.97 1.89
384 385 7.663043 ATAAACCCTTTTTAATGGGCGATAA 57.337 32.000 12.12 0.00 44.97 1.75
385 386 7.663043 AATAAACCCTTTTTAATGGGCGATA 57.337 32.000 12.12 5.16 44.97 2.92
386 387 6.553953 AATAAACCCTTTTTAATGGGCGAT 57.446 33.333 12.12 2.69 44.97 4.58
387 388 6.014499 TGAAATAAACCCTTTTTAATGGGCGA 60.014 34.615 12.12 0.73 44.97 5.54
388 389 6.166982 TGAAATAAACCCTTTTTAATGGGCG 58.833 36.000 12.12 0.00 44.97 6.13
389 390 7.165485 ACTGAAATAAACCCTTTTTAATGGGC 58.835 34.615 12.12 0.00 44.97 5.36
390 391 9.567776 AAACTGAAATAAACCCTTTTTAATGGG 57.432 29.630 10.93 10.93 46.16 4.00
473 481 2.041686 GCTCCGACAGTCTCCGACT 61.042 63.158 0.00 0.00 44.44 4.18
479 487 1.066573 CCTCATTTGCTCCGACAGTCT 60.067 52.381 0.00 0.00 0.00 3.24
481 489 0.976641 TCCTCATTTGCTCCGACAGT 59.023 50.000 0.00 0.00 0.00 3.55
560 568 3.528597 TGGTTTTGGAACGGAAAAAGG 57.471 42.857 0.00 0.00 36.61 3.11
727 1078 3.204382 AGGTGAATATTCGGGGGATTTGT 59.796 43.478 10.80 0.00 0.00 2.83
738 1089 2.135933 CGCGAAGGGAGGTGAATATTC 58.864 52.381 0.00 8.60 46.37 1.75
739 1090 2.240493 CGCGAAGGGAGGTGAATATT 57.760 50.000 0.00 0.00 46.37 1.28
762 1113 2.158957 TCTTTATAGAGGCCAAGGCGTG 60.159 50.000 11.47 0.00 43.06 5.34
844 1195 1.596934 GTGGTCGCTGGATTGGAGA 59.403 57.895 0.00 0.00 0.00 3.71
973 1329 4.135493 GAAACAGACGCCGCGAGC 62.135 66.667 21.79 8.84 38.52 5.03
990 1350 3.499737 GTCGCCATCCCTGCAACG 61.500 66.667 0.00 0.00 0.00 4.10
992 1352 3.203086 TTGGTCGCCATCCCTGCAA 62.203 57.895 0.00 0.00 31.53 4.08
1281 1643 0.106708 AATCACACATCCGATCCCCG 59.893 55.000 0.00 0.00 38.18 5.73
1331 1693 4.143543 TGGAGCTCAAAATGATGACACAA 58.856 39.130 17.19 0.00 0.00 3.33
1356 1719 8.949421 ACCCAATATTTGTCTCCACTATCTTAT 58.051 33.333 0.00 0.00 0.00 1.73
1500 1974 2.100584 TGAACCAGTTTTGCCACATGTC 59.899 45.455 0.00 0.00 0.00 3.06
1514 1988 3.209410 ACTGAGAGCAAAACTGAACCAG 58.791 45.455 0.00 0.00 37.52 4.00
1548 2022 6.888430 ACTGACTTTAAATTACAGACTTGCG 58.112 36.000 17.23 0.00 33.53 4.85
1574 2048 3.007635 GACATACTACCAAGGGTTGCAC 58.992 50.000 0.00 0.00 37.09 4.57
1750 2395 9.512435 GCTGATCACCAATGCATATTATAATTC 57.488 33.333 0.00 0.00 0.00 2.17
1841 2498 9.541143 AAAACAATTAACCACCAAATCTGTTAG 57.459 29.630 0.00 0.00 0.00 2.34
1863 2520 3.430333 TCGTTTTTGGCAGAGGAAAAC 57.570 42.857 12.89 12.89 38.96 2.43
1865 2522 3.383185 ACATTCGTTTTTGGCAGAGGAAA 59.617 39.130 6.76 0.00 0.00 3.13
1881 2538 4.858935 ACAAACACAATTGAGGACATTCG 58.141 39.130 13.59 0.00 34.38 3.34
1885 2542 6.096141 ACAATGTACAAACACAATTGAGGACA 59.904 34.615 13.59 9.36 38.78 4.02
1889 2546 7.043458 GGACAACAATGTACAAACACAATTGAG 60.043 37.037 13.59 6.93 40.39 3.02
1899 2556 6.998074 AGAATCAGAGGACAACAATGTACAAA 59.002 34.615 0.00 0.00 43.39 2.83
1904 2561 4.692625 CGAAGAATCAGAGGACAACAATGT 59.307 41.667 0.00 0.00 44.25 2.71
1914 2571 0.826715 TGCCTCCGAAGAATCAGAGG 59.173 55.000 4.12 4.12 0.00 3.69
1915 2572 1.480137 ACTGCCTCCGAAGAATCAGAG 59.520 52.381 0.00 0.00 0.00 3.35
1980 2653 5.127682 GGCTATGGAGACCATCAACAAAAAT 59.872 40.000 6.55 0.00 40.74 1.82
1989 2662 3.643792 ACTACTTGGCTATGGAGACCATC 59.356 47.826 6.55 0.00 40.74 3.51
1990 2663 3.658725 ACTACTTGGCTATGGAGACCAT 58.341 45.455 1.90 8.35 46.99 3.55
1991 2664 3.116096 ACTACTTGGCTATGGAGACCA 57.884 47.619 1.90 0.00 38.19 4.02
1992 2665 5.810080 AATACTACTTGGCTATGGAGACC 57.190 43.478 1.90 0.00 0.00 3.85
1997 2673 8.589338 AGATGTTCTAATACTACTTGGCTATGG 58.411 37.037 0.00 0.00 0.00 2.74
2132 2827 1.160137 CACAGTTTAGCCTGGACAGC 58.840 55.000 0.00 0.00 36.75 4.40
2181 2913 8.508875 TCCAAAAGTCCGAACATAAAGTATTTC 58.491 33.333 0.00 0.00 40.09 2.17
2185 2917 7.574217 GCAATCCAAAAGTCCGAACATAAAGTA 60.574 37.037 0.00 0.00 0.00 2.24
2196 2928 3.074412 ACACTAGCAATCCAAAAGTCCG 58.926 45.455 0.00 0.00 0.00 4.79
2197 2929 6.151144 ACAATACACTAGCAATCCAAAAGTCC 59.849 38.462 0.00 0.00 0.00 3.85
2200 2932 7.119699 TGAGACAATACACTAGCAATCCAAAAG 59.880 37.037 0.00 0.00 0.00 2.27
2205 2937 5.294552 GGTTGAGACAATACACTAGCAATCC 59.705 44.000 0.00 0.00 0.00 3.01
2210 2942 5.294552 GGATTGGTTGAGACAATACACTAGC 59.705 44.000 0.00 0.00 38.69 3.42
2219 2951 6.323482 TGAAAAATCTGGATTGGTTGAGACAA 59.677 34.615 0.00 0.00 0.00 3.18
2220 2952 5.832595 TGAAAAATCTGGATTGGTTGAGACA 59.167 36.000 0.00 0.00 0.00 3.41
2221 2953 6.331369 TGAAAAATCTGGATTGGTTGAGAC 57.669 37.500 0.00 0.00 0.00 3.36
2222 2954 7.543359 AATGAAAAATCTGGATTGGTTGAGA 57.457 32.000 0.00 0.00 0.00 3.27
2223 2955 8.611654 AAAATGAAAAATCTGGATTGGTTGAG 57.388 30.769 0.00 0.00 0.00 3.02
2224 2956 8.977267 AAAAATGAAAAATCTGGATTGGTTGA 57.023 26.923 0.00 0.00 0.00 3.18
2317 3051 6.036577 AGGAAAAACAACAATCACACTTGT 57.963 33.333 0.00 0.00 41.01 3.16
2318 3052 6.966435 AAGGAAAAACAACAATCACACTTG 57.034 33.333 0.00 0.00 0.00 3.16
2536 3272 3.624861 GCCATCACAACCTATTGACAGAG 59.375 47.826 0.00 0.00 39.30 3.35
2754 3492 4.601084 TCAAAAACTTGGTTACACCCTCA 58.399 39.130 0.00 0.00 37.50 3.86
2871 3683 2.488153 GACTTGCACACCAAAGGATACC 59.512 50.000 0.00 0.00 31.94 2.73
2904 3819 7.064609 TGCTACTGTGTTCTGAAATATACTTGC 59.935 37.037 0.00 0.00 0.00 4.01
2956 3871 4.527038 TCCGACAAGATAGTCAAGTTCCTT 59.473 41.667 0.00 0.00 38.43 3.36
3027 3942 6.013379 TCACACCAATCTTAGATGAGACCTTT 60.013 38.462 0.00 0.00 0.00 3.11
3293 4208 3.370953 GCTATCACAAGGACCATCCAAGT 60.371 47.826 0.00 0.00 39.61 3.16
3329 4244 8.099364 TGAGAGCCTTTGAAACTACTAATTTG 57.901 34.615 0.00 0.00 0.00 2.32
3394 4312 3.138884 TGAGCATCAGCAGGTAAACAA 57.861 42.857 0.00 0.00 42.56 2.83
3506 4425 1.228245 GGTGTCCAAGGCTTCTGCA 60.228 57.895 0.00 0.00 41.91 4.41
3617 4543 9.599866 AACAACAAATACGAGATAGATGAATGA 57.400 29.630 0.00 0.00 0.00 2.57
3676 4602 2.401195 GCCAACTGCTTCGCGATC 59.599 61.111 10.88 5.70 36.87 3.69
3841 4767 0.817634 CGTCAAGGGCAAGAACACCA 60.818 55.000 0.00 0.00 0.00 4.17
3903 4829 2.888212 TGAGATCCCAAACAAAAGGGG 58.112 47.619 0.00 0.00 45.51 4.79
4034 4966 0.764271 TCCAGCCACATCACTTCACA 59.236 50.000 0.00 0.00 0.00 3.58
4088 5020 2.483876 CGGAGACAAAGACTTTGAGCA 58.516 47.619 30.01 0.00 43.26 4.26
4093 5025 3.118000 AGGAAACCGGAGACAAAGACTTT 60.118 43.478 9.46 0.00 0.00 2.66
4094 5026 2.438392 AGGAAACCGGAGACAAAGACTT 59.562 45.455 9.46 0.00 0.00 3.01
4095 5027 2.047830 AGGAAACCGGAGACAAAGACT 58.952 47.619 9.46 0.00 0.00 3.24
4104 5036 0.035458 AGCACAGAAGGAAACCGGAG 59.965 55.000 9.46 0.00 0.00 4.63
4122 5054 8.131100 TCATTTCAAACTAAAGAGAGCAAACAG 58.869 33.333 0.00 0.00 0.00 3.16
4133 5065 8.925161 TGACAAGGTTTCATTTCAAACTAAAG 57.075 30.769 0.00 0.00 36.62 1.85
4184 5119 8.270080 AGATGCTGCTAATTTATCATCATGAG 57.730 34.615 0.09 0.00 34.42 2.90
4204 5139 4.614535 CGCCTAATGCTATTTGGAAGATGC 60.615 45.833 11.42 0.00 38.05 3.91
4232 5197 2.932614 GAGAGAAACATGTCCGTCCATG 59.067 50.000 0.00 9.32 46.14 3.66
4233 5198 2.834549 AGAGAGAAACATGTCCGTCCAT 59.165 45.455 0.00 0.00 0.00 3.41
4236 5201 2.996621 CCAAGAGAGAAACATGTCCGTC 59.003 50.000 0.00 0.00 0.00 4.79
4237 5202 2.368875 ACCAAGAGAGAAACATGTCCGT 59.631 45.455 0.00 0.00 0.00 4.69
4239 5204 5.774498 AAAACCAAGAGAGAAACATGTCC 57.226 39.130 0.00 0.00 0.00 4.02
4240 5205 8.099364 TGATAAAACCAAGAGAGAAACATGTC 57.901 34.615 0.00 0.00 0.00 3.06
4241 5206 8.463930 TTGATAAAACCAAGAGAGAAACATGT 57.536 30.769 0.00 0.00 0.00 3.21
4242 5207 9.565213 GATTGATAAAACCAAGAGAGAAACATG 57.435 33.333 0.00 0.00 0.00 3.21
4243 5208 8.743714 GGATTGATAAAACCAAGAGAGAAACAT 58.256 33.333 0.00 0.00 0.00 2.71
4244 5209 7.176690 GGGATTGATAAAACCAAGAGAGAAACA 59.823 37.037 0.00 0.00 0.00 2.83
4245 5210 7.539436 GGGATTGATAAAACCAAGAGAGAAAC 58.461 38.462 0.00 0.00 0.00 2.78
4246 5211 6.374333 CGGGATTGATAAAACCAAGAGAGAAA 59.626 38.462 0.00 0.00 0.00 2.52
4251 5216 5.648092 AGAACGGGATTGATAAAACCAAGAG 59.352 40.000 0.00 0.00 0.00 2.85
4252 5217 5.566469 AGAACGGGATTGATAAAACCAAGA 58.434 37.500 0.00 0.00 0.00 3.02
4256 5221 3.630769 GGGAGAACGGGATTGATAAAACC 59.369 47.826 0.00 0.00 0.00 3.27
4257 5222 4.266714 TGGGAGAACGGGATTGATAAAAC 58.733 43.478 0.00 0.00 0.00 2.43
4260 5225 3.112263 ACTGGGAGAACGGGATTGATAA 58.888 45.455 0.00 0.00 0.00 1.75
4261 5226 2.434336 CACTGGGAGAACGGGATTGATA 59.566 50.000 0.00 0.00 0.00 2.15
4262 5227 1.210478 CACTGGGAGAACGGGATTGAT 59.790 52.381 0.00 0.00 0.00 2.57
4264 5229 1.026718 GCACTGGGAGAACGGGATTG 61.027 60.000 0.00 0.00 0.00 2.67
4265 5230 1.201429 AGCACTGGGAGAACGGGATT 61.201 55.000 0.00 0.00 0.00 3.01
4266 5231 1.613630 AGCACTGGGAGAACGGGAT 60.614 57.895 0.00 0.00 0.00 3.85
4277 5242 1.638133 CTCGACATCTTCAGCACTGG 58.362 55.000 0.00 0.00 0.00 4.00
4322 5290 6.998968 AGCATCAAAACAGATAAAGAGGAG 57.001 37.500 0.00 0.00 0.00 3.69
4331 5438 5.479375 AGTGGATCAAAGCATCAAAACAGAT 59.521 36.000 0.00 0.00 0.00 2.90
4348 5455 2.476854 GCGTGCATTCAGAAAGTGGATC 60.477 50.000 0.00 0.00 0.00 3.36
4396 5511 1.971167 TTCGCGCCTTTTCAGCCAT 60.971 52.632 0.00 0.00 0.00 4.40
4397 5512 2.593148 TTCGCGCCTTTTCAGCCA 60.593 55.556 0.00 0.00 0.00 4.75
4398 5513 1.296056 TAGTTCGCGCCTTTTCAGCC 61.296 55.000 0.00 0.00 0.00 4.85
4472 5592 4.527816 TCTGAAAAATAATGGCCACAGCTT 59.472 37.500 8.16 0.00 39.73 3.74
4559 5710 1.305219 TAGCAGGCACGTTCAATGGC 61.305 55.000 0.00 0.00 42.75 4.40
4845 5996 6.185852 TGTACGATTACGAAGAGATGAACA 57.814 37.500 0.00 0.00 42.66 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.