Multiple sequence alignment - TraesCS6B01G187200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G187200 chr6B 100.000 3769 0 0 1 3769 213465659 213469427 0.000000e+00 6961
1 TraesCS6B01G187200 chr6B 96.043 834 26 4 2943 3769 127371871 127371038 0.000000e+00 1351
2 TraesCS6B01G187200 chr6B 82.601 569 85 5 1811 2372 567611756 567612317 1.220000e-134 490
3 TraesCS6B01G187200 chr6B 86.071 280 35 3 1370 1646 567611409 567611687 7.910000e-77 298
4 TraesCS6B01G187200 chr6B 88.983 236 18 7 2507 2735 567612396 567612630 6.160000e-73 285
5 TraesCS6B01G187200 chr6B 79.208 202 35 7 1419 1615 567711905 567711706 2.360000e-27 134
6 TraesCS6B01G187200 chr6B 92.857 84 6 0 2678 2761 234658902 234658985 5.110000e-24 122
7 TraesCS6B01G187200 chr6A 89.951 2239 127 37 678 2856 162311280 162309080 0.000000e+00 2798
8 TraesCS6B01G187200 chr6A 83.610 964 115 14 1784 2727 177697006 177697946 0.000000e+00 865
9 TraesCS6B01G187200 chr6A 84.183 569 38 18 85 647 162311995 162311473 4.340000e-139 505
10 TraesCS6B01G187200 chr6A 82.777 569 84 5 1811 2372 521648999 521649560 2.610000e-136 496
11 TraesCS6B01G187200 chr6A 86.429 280 34 2 1370 1646 521648652 521648930 1.700000e-78 303
12 TraesCS6B01G187200 chr6A 87.815 238 20 7 2507 2735 521649653 521649890 1.730000e-68 270
13 TraesCS6B01G187200 chr6A 78.151 238 39 10 1386 1615 521881663 521881431 5.080000e-29 139
14 TraesCS6B01G187200 chr6D 90.350 1430 94 19 1356 2770 136389204 136390604 0.000000e+00 1836
15 TraesCS6B01G187200 chr6D 94.128 1158 42 13 1723 2855 121345852 121344696 0.000000e+00 1738
16 TraesCS6B01G187200 chr6D 89.723 1012 62 16 2 997 121347558 121346573 0.000000e+00 1254
17 TraesCS6B01G187200 chr6D 84.882 721 63 22 968 1665 121346566 121345869 0.000000e+00 686
18 TraesCS6B01G187200 chr6D 84.023 532 73 3 1847 2372 379338983 379338458 5.620000e-138 501
19 TraesCS6B01G187200 chr6D 87.500 280 31 3 1370 1646 379339374 379339096 1.690000e-83 320
20 TraesCS6B01G187200 chr6D 87.288 236 22 7 2507 2735 379338365 379338131 2.890000e-66 263
21 TraesCS6B01G187200 chr6D 79.310 203 35 6 1418 1615 379333527 379333727 6.570000e-28 135
22 TraesCS6B01G187200 chr7B 97.458 826 14 4 2948 3769 632687475 632686653 0.000000e+00 1402
23 TraesCS6B01G187200 chr7B 96.519 833 18 6 2947 3769 694130705 694129874 0.000000e+00 1367
24 TraesCS6B01G187200 chr7B 96.502 829 22 4 2947 3769 661317596 661316769 0.000000e+00 1363
25 TraesCS6B01G187200 chr7B 78.333 240 37 11 1385 1615 137027066 137026833 1.410000e-29 141
26 TraesCS6B01G187200 chr2A 97.229 830 17 3 2946 3769 147545721 147546550 0.000000e+00 1400
27 TraesCS6B01G187200 chr5B 96.984 829 19 3 2947 3769 9270170 9270998 0.000000e+00 1387
28 TraesCS6B01G187200 chr5A 96.743 829 21 3 2947 3769 537622266 537623094 0.000000e+00 1376
29 TraesCS6B01G187200 chr1B 96.411 836 24 3 2940 3769 38209972 38210807 0.000000e+00 1373
30 TraesCS6B01G187200 chr1B 96.594 822 20 5 2953 3769 623113104 623113922 0.000000e+00 1356
31 TraesCS6B01G187200 chr7A 78.481 237 42 6 1385 1615 173638868 173638635 3.030000e-31 147
32 TraesCS6B01G187200 chr7D 77.222 180 33 7 2555 2733 170729871 170729699 8.620000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G187200 chr6B 213465659 213469427 3768 False 6961.000000 6961 100.000000 1 3769 1 chr6B.!!$F1 3768
1 TraesCS6B01G187200 chr6B 127371038 127371871 833 True 1351.000000 1351 96.043000 2943 3769 1 chr6B.!!$R1 826
2 TraesCS6B01G187200 chr6B 567611409 567612630 1221 False 357.666667 490 85.885000 1370 2735 3 chr6B.!!$F3 1365
3 TraesCS6B01G187200 chr6A 162309080 162311995 2915 True 1651.500000 2798 87.067000 85 2856 2 chr6A.!!$R2 2771
4 TraesCS6B01G187200 chr6A 177697006 177697946 940 False 865.000000 865 83.610000 1784 2727 1 chr6A.!!$F1 943
5 TraesCS6B01G187200 chr6A 521648652 521649890 1238 False 356.333333 496 85.673667 1370 2735 3 chr6A.!!$F2 1365
6 TraesCS6B01G187200 chr6D 136389204 136390604 1400 False 1836.000000 1836 90.350000 1356 2770 1 chr6D.!!$F1 1414
7 TraesCS6B01G187200 chr6D 121344696 121347558 2862 True 1226.000000 1738 89.577667 2 2855 3 chr6D.!!$R1 2853
8 TraesCS6B01G187200 chr6D 379338131 379339374 1243 True 361.333333 501 86.270333 1370 2735 3 chr6D.!!$R2 1365
9 TraesCS6B01G187200 chr7B 632686653 632687475 822 True 1402.000000 1402 97.458000 2948 3769 1 chr7B.!!$R2 821
10 TraesCS6B01G187200 chr7B 694129874 694130705 831 True 1367.000000 1367 96.519000 2947 3769 1 chr7B.!!$R4 822
11 TraesCS6B01G187200 chr7B 661316769 661317596 827 True 1363.000000 1363 96.502000 2947 3769 1 chr7B.!!$R3 822
12 TraesCS6B01G187200 chr2A 147545721 147546550 829 False 1400.000000 1400 97.229000 2946 3769 1 chr2A.!!$F1 823
13 TraesCS6B01G187200 chr5B 9270170 9270998 828 False 1387.000000 1387 96.984000 2947 3769 1 chr5B.!!$F1 822
14 TraesCS6B01G187200 chr5A 537622266 537623094 828 False 1376.000000 1376 96.743000 2947 3769 1 chr5A.!!$F1 822
15 TraesCS6B01G187200 chr1B 38209972 38210807 835 False 1373.000000 1373 96.411000 2940 3769 1 chr1B.!!$F1 829
16 TraesCS6B01G187200 chr1B 623113104 623113922 818 False 1356.000000 1356 96.594000 2953 3769 1 chr1B.!!$F2 816

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
558 568 0.033090 TGAGTCACTGACTGCAGCAG 59.967 55.0 26.43 26.43 43.53 4.24 F
578 588 0.098905 ATCATCAGGTGACGTCGACG 59.901 55.0 34.58 34.58 40.28 5.12 F
1279 1515 0.108992 GGCGACAGTACCATCGTCAA 60.109 55.0 14.23 0.00 42.43 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1720 1989 0.104120 CGGACATGCTATTCCCGTCA 59.896 55.0 0.00 0.0 35.83 4.35 R
1800 2074 0.604578 GCCACCTGCAACATGTTCAT 59.395 50.0 8.48 0.0 40.77 2.57 R
2862 3237 0.245539 ACAGACGACGGTATGGTTGG 59.754 55.0 0.00 0.0 39.67 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 8.411683 GCATAATGGGAATCAGGATTATCAATC 58.588 37.037 0.00 0.00 37.17 2.67
55 56 5.335191 GGAATCAGGATTATCAATCAACCGC 60.335 44.000 0.00 0.00 39.71 5.68
56 57 4.149511 TCAGGATTATCAATCAACCGCA 57.850 40.909 0.00 0.00 39.71 5.69
60 61 3.983344 GGATTATCAATCAACCGCAATGC 59.017 43.478 0.00 0.00 39.71 3.56
93 94 4.530875 AGGAGGGCAAGATTAAGACAATG 58.469 43.478 0.00 0.00 0.00 2.82
97 98 4.891756 AGGGCAAGATTAAGACAATGGATG 59.108 41.667 0.00 0.00 0.00 3.51
116 117 4.932200 GGATGTCACTTGGTAGTTGAGAAG 59.068 45.833 0.00 0.00 30.26 2.85
123 124 2.265367 TGGTAGTTGAGAAGGGATGCA 58.735 47.619 0.00 0.00 0.00 3.96
136 137 2.629336 GGATGCACCCTTCCTCTTAG 57.371 55.000 0.00 0.00 33.61 2.18
142 143 3.244561 TGCACCCTTCCTCTTAGTTTCTG 60.245 47.826 0.00 0.00 0.00 3.02
143 144 3.870299 GCACCCTTCCTCTTAGTTTCTGG 60.870 52.174 0.00 0.00 0.00 3.86
172 173 1.640149 TGGGAATGGGAGAAATGCAGA 59.360 47.619 0.00 0.00 0.00 4.26
199 200 4.265206 GGAACCTGGGATGCCATG 57.735 61.111 6.34 6.71 0.00 3.66
222 225 0.818296 CCGTCCTCTTTCTCGGTCAT 59.182 55.000 0.00 0.00 38.45 3.06
280 283 1.858091 CACGGATCCTCGGAAGAATG 58.142 55.000 10.75 0.00 41.32 2.67
302 305 1.072331 AGGCACTCTCGTGGTTGAAAT 59.928 47.619 0.00 0.00 41.51 2.17
311 314 1.197721 CGTGGTTGAAATGTCAGAGCC 59.802 52.381 0.00 0.00 34.49 4.70
340 346 3.566273 TTGCATGAACGCAAGGTTG 57.434 47.368 0.00 0.00 46.61 3.77
343 349 0.387239 GCATGAACGCAAGGTTGGTC 60.387 55.000 0.00 0.00 37.50 4.02
355 361 4.360964 TTGGTCCGTACGCGTGGG 62.361 66.667 24.59 22.55 36.15 4.61
429 435 2.430465 AGAGTTTAGCATGTGCCTGTG 58.570 47.619 0.57 0.00 43.38 3.66
447 457 3.857052 TGTGTAGAAAGCTAATCCGTGG 58.143 45.455 0.00 0.00 0.00 4.94
448 458 3.259876 TGTGTAGAAAGCTAATCCGTGGT 59.740 43.478 0.00 0.00 0.00 4.16
449 459 4.463539 TGTGTAGAAAGCTAATCCGTGGTA 59.536 41.667 0.00 0.00 0.00 3.25
499 509 1.270625 TGCTGTTTCCAGTCCTAACCG 60.271 52.381 0.00 0.00 41.02 4.44
525 535 1.770294 AGCAGAAAACCCACGGAAAA 58.230 45.000 0.00 0.00 0.00 2.29
536 546 0.997196 CACGGAAAAGCTAGCGGTAC 59.003 55.000 9.55 2.88 0.00 3.34
537 547 0.604578 ACGGAAAAGCTAGCGGTACA 59.395 50.000 9.55 0.00 0.00 2.90
538 548 0.997196 CGGAAAAGCTAGCGGTACAC 59.003 55.000 9.55 0.34 0.00 2.90
539 549 1.403780 CGGAAAAGCTAGCGGTACACT 60.404 52.381 9.55 0.00 0.00 3.55
540 550 2.000447 GGAAAAGCTAGCGGTACACTG 59.000 52.381 9.55 0.00 0.00 3.66
541 551 2.353406 GGAAAAGCTAGCGGTACACTGA 60.353 50.000 9.55 0.00 0.00 3.41
542 552 2.656560 AAAGCTAGCGGTACACTGAG 57.343 50.000 9.55 0.00 0.00 3.35
543 553 1.546961 AAGCTAGCGGTACACTGAGT 58.453 50.000 9.55 0.00 0.00 3.41
558 568 0.033090 TGAGTCACTGACTGCAGCAG 59.967 55.000 26.43 26.43 43.53 4.24
567 577 1.134491 TGACTGCAGCAGATCATCAGG 60.134 52.381 29.70 0.00 35.18 3.86
577 587 1.402259 AGATCATCAGGTGACGTCGAC 59.598 52.381 11.62 5.18 40.28 4.20
578 588 0.098905 ATCATCAGGTGACGTCGACG 59.901 55.000 34.58 34.58 40.28 5.12
619 629 4.451096 GTCCTGCTTACGATCTGTTTTGAA 59.549 41.667 0.00 0.00 0.00 2.69
620 630 5.049680 GTCCTGCTTACGATCTGTTTTGAAA 60.050 40.000 0.00 0.00 0.00 2.69
621 631 5.049680 TCCTGCTTACGATCTGTTTTGAAAC 60.050 40.000 0.00 0.00 39.33 2.78
622 632 4.768145 TGCTTACGATCTGTTTTGAAACG 58.232 39.130 0.00 0.00 41.74 3.60
623 633 4.508492 TGCTTACGATCTGTTTTGAAACGA 59.492 37.500 0.00 3.66 41.74 3.85
624 634 5.006844 TGCTTACGATCTGTTTTGAAACGAA 59.993 36.000 0.00 0.00 41.74 3.85
747 919 1.421485 GTGCTTCGTCAGAATGCCG 59.579 57.895 0.00 0.00 35.56 5.69
779 952 0.250727 TTCAGAAAGAAGGCACGGGG 60.251 55.000 0.00 0.00 0.00 5.73
806 979 0.807667 CCCAGGAGAATGCTTCGTCG 60.808 60.000 0.00 0.00 29.87 5.12
818 991 1.466697 GCTTCGTCGGAGAGAGTCTTG 60.467 57.143 4.21 0.00 36.95 3.02
925 1109 4.030134 AGAGAACGAGTAATTACGCCAG 57.970 45.455 12.94 7.27 0.00 4.85
929 1113 3.075866 ACGAGTAATTACGCCAGCTAC 57.924 47.619 12.94 0.00 0.00 3.58
997 1181 6.764379 TCCTTCTTCTTCTTCTTCTTCTTCC 58.236 40.000 0.00 0.00 0.00 3.46
998 1182 6.327626 TCCTTCTTCTTCTTCTTCTTCTTCCA 59.672 38.462 0.00 0.00 0.00 3.53
1005 1216 2.099141 TCTTCTTCTTCCACATGCGG 57.901 50.000 0.00 0.00 0.00 5.69
1041 1262 2.649190 TCCTCAACTCCTGATCTCGAG 58.351 52.381 5.93 5.93 32.14 4.04
1046 1267 4.257510 TCCTGATCTCGAGCGCGC 62.258 66.667 26.66 26.66 37.46 6.86
1071 1292 2.119484 AACGCCCCTCGACCATGAAA 62.119 55.000 0.00 0.00 41.67 2.69
1220 1444 1.524482 GCGCCTCCTCTTCATCCTT 59.476 57.895 0.00 0.00 0.00 3.36
1279 1515 0.108992 GGCGACAGTACCATCGTCAA 60.109 55.000 14.23 0.00 42.43 3.18
1281 1517 1.402456 GCGACAGTACCATCGTCAACT 60.402 52.381 15.47 0.00 40.49 3.16
1285 1521 1.654105 CAGTACCATCGTCAACTTCGC 59.346 52.381 0.00 0.00 0.00 4.70
1314 1550 1.985116 GGCCAACTCCTCCTCGTCT 60.985 63.158 0.00 0.00 0.00 4.18
1325 1564 3.441290 CTCGTCTTCGGCGTCCCT 61.441 66.667 6.85 0.00 37.69 4.20
1327 1566 4.796231 CGTCTTCGGCGTCCCTGG 62.796 72.222 6.85 0.00 0.00 4.45
1328 1567 3.692406 GTCTTCGGCGTCCCTGGT 61.692 66.667 6.85 0.00 0.00 4.00
1334 1573 2.642254 CGGCGTCCCTGGTCAACTA 61.642 63.158 0.00 0.00 0.00 2.24
1338 1577 0.531200 CGTCCCTGGTCAACTACTCC 59.469 60.000 0.00 0.00 0.00 3.85
1342 1581 1.546961 CCTGGTCAACTACTCCTCGT 58.453 55.000 0.00 0.00 0.00 4.18
1392 1631 2.188469 GATCTTACGCGGGGCCAA 59.812 61.111 12.47 0.00 0.00 4.52
1629 1877 0.753262 ACCACGTCAAGTCTCTGCTT 59.247 50.000 0.00 0.00 0.00 3.91
1671 1940 0.179181 CACGGCACATCTCATGTTGC 60.179 55.000 0.00 0.00 42.70 4.17
1672 1941 1.308069 ACGGCACATCTCATGTTGCC 61.308 55.000 14.90 14.90 45.55 4.52
1711 1980 0.323629 TTACCCTTGGCAACTCGAGG 59.676 55.000 18.41 0.17 37.61 4.63
1712 1981 2.045926 CCCTTGGCAACTCGAGGG 60.046 66.667 18.41 6.81 42.65 4.30
1713 1982 2.747855 CCTTGGCAACTCGAGGGC 60.748 66.667 18.41 19.04 37.61 5.19
1715 1984 2.281484 TTGGCAACTCGAGGGCAC 60.281 61.111 25.99 17.87 39.47 5.01
1719 1988 3.691342 CAACTCGAGGGCACGGGA 61.691 66.667 18.41 0.00 37.20 5.14
1720 1989 2.683933 AACTCGAGGGCACGGGAT 60.684 61.111 18.41 0.00 37.20 3.85
1721 1990 3.019003 AACTCGAGGGCACGGGATG 62.019 63.158 18.41 0.00 37.20 3.51
1779 2051 1.871676 CGATCGTCCACTTCTATCCGA 59.128 52.381 7.03 0.00 0.00 4.55
2000 2281 2.733593 GACGTGCACCTCGACACC 60.734 66.667 12.15 0.00 33.09 4.16
2092 2373 2.803479 CCCCTCGGTGTACTACGC 59.197 66.667 5.13 0.00 0.00 4.42
2486 2837 1.503542 CGGTCTGCTGATGGTTTGC 59.496 57.895 0.00 0.00 0.00 3.68
2494 2845 0.609662 CTGATGGTTTGCCTTTGGGG 59.390 55.000 0.00 0.00 35.27 4.96
2522 2873 2.049156 CAGGTTGACGCGCTGAGA 60.049 61.111 5.73 0.00 0.00 3.27
2771 3139 2.074576 CCTGCTGACATTGAGTGAGTG 58.925 52.381 0.00 0.00 33.58 3.51
2772 3140 2.074576 CTGCTGACATTGAGTGAGTGG 58.925 52.381 0.00 0.00 33.58 4.00
2795 3166 1.741706 CAAATGCATCGAAGCCAGACT 59.258 47.619 10.54 0.00 0.00 3.24
2848 3223 5.456822 GCATTAATTCCGAGCAAAGTGAATC 59.543 40.000 0.00 0.00 0.00 2.52
2859 3234 4.687464 GTGAATCCACGGTTCGGT 57.313 55.556 0.00 0.00 33.10 4.69
2860 3235 2.922779 GTGAATCCACGGTTCGGTT 58.077 52.632 0.00 0.00 33.10 4.44
2861 3236 0.515564 GTGAATCCACGGTTCGGTTG 59.484 55.000 0.00 0.00 33.10 3.77
2862 3237 1.231958 TGAATCCACGGTTCGGTTGC 61.232 55.000 0.00 0.00 0.00 4.17
2863 3238 1.918868 GAATCCACGGTTCGGTTGCC 61.919 60.000 0.00 0.00 0.00 4.52
2864 3239 2.684192 AATCCACGGTTCGGTTGCCA 62.684 55.000 0.00 0.00 0.00 4.92
2865 3240 2.684192 ATCCACGGTTCGGTTGCCAA 62.684 55.000 0.00 0.00 0.00 4.52
2866 3241 2.330041 CACGGTTCGGTTGCCAAC 59.670 61.111 0.00 0.00 0.00 3.77
2876 3251 1.791662 GTTGCCAACCATACCGTCG 59.208 57.895 0.00 0.00 0.00 5.12
2877 3252 0.952010 GTTGCCAACCATACCGTCGT 60.952 55.000 0.00 0.00 0.00 4.34
2878 3253 0.671163 TTGCCAACCATACCGTCGTC 60.671 55.000 0.00 0.00 0.00 4.20
2879 3254 1.217244 GCCAACCATACCGTCGTCT 59.783 57.895 0.00 0.00 0.00 4.18
2880 3255 1.082117 GCCAACCATACCGTCGTCTG 61.082 60.000 0.00 0.00 0.00 3.51
2881 3256 0.245539 CCAACCATACCGTCGTCTGT 59.754 55.000 0.00 0.00 0.00 3.41
2882 3257 1.625616 CAACCATACCGTCGTCTGTC 58.374 55.000 0.00 0.00 0.00 3.51
2883 3258 1.201647 CAACCATACCGTCGTCTGTCT 59.798 52.381 0.00 0.00 0.00 3.41
2884 3259 1.542492 ACCATACCGTCGTCTGTCTT 58.458 50.000 0.00 0.00 0.00 3.01
2885 3260 1.891150 ACCATACCGTCGTCTGTCTTT 59.109 47.619 0.00 0.00 0.00 2.52
2886 3261 2.094854 ACCATACCGTCGTCTGTCTTTC 60.095 50.000 0.00 0.00 0.00 2.62
2887 3262 2.163815 CCATACCGTCGTCTGTCTTTCT 59.836 50.000 0.00 0.00 0.00 2.52
2888 3263 2.983402 TACCGTCGTCTGTCTTTCTG 57.017 50.000 0.00 0.00 0.00 3.02
2889 3264 1.030457 ACCGTCGTCTGTCTTTCTGT 58.970 50.000 0.00 0.00 0.00 3.41
2890 3265 1.001597 ACCGTCGTCTGTCTTTCTGTC 60.002 52.381 0.00 0.00 0.00 3.51
2891 3266 1.267261 CCGTCGTCTGTCTTTCTGTCT 59.733 52.381 0.00 0.00 0.00 3.41
2892 3267 2.311462 CGTCGTCTGTCTTTCTGTCTG 58.689 52.381 0.00 0.00 0.00 3.51
2893 3268 2.287069 CGTCGTCTGTCTTTCTGTCTGT 60.287 50.000 0.00 0.00 0.00 3.41
2894 3269 3.046390 GTCGTCTGTCTTTCTGTCTGTG 58.954 50.000 0.00 0.00 0.00 3.66
2895 3270 2.688446 TCGTCTGTCTTTCTGTCTGTGT 59.312 45.455 0.00 0.00 0.00 3.72
2896 3271 2.791560 CGTCTGTCTTTCTGTCTGTGTG 59.208 50.000 0.00 0.00 0.00 3.82
2897 3272 3.735208 CGTCTGTCTTTCTGTCTGTGTGT 60.735 47.826 0.00 0.00 0.00 3.72
2898 3273 3.799420 GTCTGTCTTTCTGTCTGTGTGTC 59.201 47.826 0.00 0.00 0.00 3.67
2899 3274 3.701542 TCTGTCTTTCTGTCTGTGTGTCT 59.298 43.478 0.00 0.00 0.00 3.41
2900 3275 3.785486 TGTCTTTCTGTCTGTGTGTCTG 58.215 45.455 0.00 0.00 0.00 3.51
2901 3276 3.195610 TGTCTTTCTGTCTGTGTGTCTGT 59.804 43.478 0.00 0.00 0.00 3.41
2902 3277 3.553511 GTCTTTCTGTCTGTGTGTCTGTG 59.446 47.826 0.00 0.00 0.00 3.66
2903 3278 3.195610 TCTTTCTGTCTGTGTGTCTGTGT 59.804 43.478 0.00 0.00 0.00 3.72
2904 3279 2.584492 TCTGTCTGTGTGTCTGTGTG 57.416 50.000 0.00 0.00 0.00 3.82
2905 3280 1.824852 TCTGTCTGTGTGTCTGTGTGT 59.175 47.619 0.00 0.00 0.00 3.72
2906 3281 1.929169 CTGTCTGTGTGTCTGTGTGTG 59.071 52.381 0.00 0.00 0.00 3.82
2907 3282 1.275010 TGTCTGTGTGTCTGTGTGTGT 59.725 47.619 0.00 0.00 0.00 3.72
2908 3283 1.927174 GTCTGTGTGTCTGTGTGTGTC 59.073 52.381 0.00 0.00 0.00 3.67
2909 3284 1.824852 TCTGTGTGTCTGTGTGTGTCT 59.175 47.619 0.00 0.00 0.00 3.41
2910 3285 1.929169 CTGTGTGTCTGTGTGTGTCTG 59.071 52.381 0.00 0.00 0.00 3.51
2911 3286 1.275010 TGTGTGTCTGTGTGTGTCTGT 59.725 47.619 0.00 0.00 0.00 3.41
2912 3287 2.494073 TGTGTGTCTGTGTGTGTCTGTA 59.506 45.455 0.00 0.00 0.00 2.74
2913 3288 2.858344 GTGTGTCTGTGTGTGTCTGTAC 59.142 50.000 0.00 0.00 0.00 2.90
2914 3289 2.758423 TGTGTCTGTGTGTGTCTGTACT 59.242 45.455 0.00 0.00 0.00 2.73
2915 3290 3.949113 TGTGTCTGTGTGTGTCTGTACTA 59.051 43.478 0.00 0.00 0.00 1.82
2916 3291 4.036380 TGTGTCTGTGTGTGTCTGTACTAG 59.964 45.833 0.00 0.00 0.00 2.57
2917 3292 3.004419 TGTCTGTGTGTGTCTGTACTAGC 59.996 47.826 0.00 0.00 0.00 3.42
2918 3293 3.004419 GTCTGTGTGTGTCTGTACTAGCA 59.996 47.826 0.00 0.00 0.00 3.49
2919 3294 3.253432 TCTGTGTGTGTCTGTACTAGCAG 59.747 47.826 0.00 0.00 37.81 4.24
2920 3295 2.296190 TGTGTGTGTCTGTACTAGCAGG 59.704 50.000 0.00 0.00 37.12 4.85
2921 3296 1.893137 TGTGTGTCTGTACTAGCAGGG 59.107 52.381 0.00 0.00 37.12 4.45
2922 3297 1.893801 GTGTGTCTGTACTAGCAGGGT 59.106 52.381 0.00 0.00 37.12 4.34
2923 3298 2.299297 GTGTGTCTGTACTAGCAGGGTT 59.701 50.000 0.00 0.00 37.12 4.11
2924 3299 2.969950 TGTGTCTGTACTAGCAGGGTTT 59.030 45.455 0.00 0.00 37.12 3.27
2925 3300 3.006537 TGTGTCTGTACTAGCAGGGTTTC 59.993 47.826 0.00 0.00 37.12 2.78
2926 3301 3.258622 GTGTCTGTACTAGCAGGGTTTCT 59.741 47.826 0.00 0.00 37.12 2.52
2927 3302 3.510360 TGTCTGTACTAGCAGGGTTTCTC 59.490 47.826 0.00 0.00 37.12 2.87
2928 3303 3.097614 TCTGTACTAGCAGGGTTTCTCC 58.902 50.000 0.00 0.00 37.12 3.71
2929 3304 3.100671 CTGTACTAGCAGGGTTTCTCCT 58.899 50.000 0.00 0.00 37.71 3.69
2930 3305 3.515901 CTGTACTAGCAGGGTTTCTCCTT 59.484 47.826 0.00 0.00 34.31 3.36
2931 3306 3.514309 TGTACTAGCAGGGTTTCTCCTTC 59.486 47.826 0.00 0.00 34.31 3.46
2932 3307 1.909986 ACTAGCAGGGTTTCTCCTTCC 59.090 52.381 0.00 0.00 34.31 3.46
2933 3308 1.210722 CTAGCAGGGTTTCTCCTTCCC 59.789 57.143 0.00 0.00 41.36 3.97
2934 3309 1.000771 GCAGGGTTTCTCCTTCCCC 60.001 63.158 0.00 0.00 41.95 4.81
2936 3311 1.966845 CAGGGTTTCTCCTTCCCCTA 58.033 55.000 0.00 0.00 45.88 3.53
2937 3312 2.493091 CAGGGTTTCTCCTTCCCCTAT 58.507 52.381 0.00 0.00 45.88 2.57
2938 3313 2.439880 CAGGGTTTCTCCTTCCCCTATC 59.560 54.545 0.00 0.00 45.88 2.08
2939 3314 2.322543 AGGGTTTCTCCTTCCCCTATCT 59.677 50.000 0.00 0.00 45.78 1.98
2940 3315 2.706723 GGGTTTCTCCTTCCCCTATCTC 59.293 54.545 0.00 0.00 35.52 2.75
2941 3316 2.706723 GGTTTCTCCTTCCCCTATCTCC 59.293 54.545 0.00 0.00 0.00 3.71
2942 3317 3.385115 GTTTCTCCTTCCCCTATCTCCA 58.615 50.000 0.00 0.00 0.00 3.86
2943 3318 2.777459 TCTCCTTCCCCTATCTCCAC 57.223 55.000 0.00 0.00 0.00 4.02
2944 3319 2.227703 TCTCCTTCCCCTATCTCCACT 58.772 52.381 0.00 0.00 0.00 4.00
3105 3480 2.301738 CCTTCCTTTCCCCTCCGCT 61.302 63.158 0.00 0.00 0.00 5.52
3503 3888 3.304911 AGGTCTTCGATCAGATCTGGA 57.695 47.619 22.42 9.34 32.60 3.86
3510 3895 6.705381 GTCTTCGATCAGATCTGGATGAAAAT 59.295 38.462 22.42 6.70 0.00 1.82
3623 4010 1.993948 GCTACCTCCGGGGGAAACT 60.994 63.158 32.33 6.98 40.03 2.66
3655 4042 4.514577 CGGATGACGGCGGCTCTT 62.515 66.667 16.45 0.00 39.42 2.85
3759 4146 3.671433 CGGTGCTTCATCTTTCACATTGG 60.671 47.826 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.601810 TTCCCATTATGCTACTATTCTAAGAGA 57.398 33.333 0.00 0.00 0.00 3.10
18 19 7.574021 AATCCTGATTCCCATTATGCTACTA 57.426 36.000 0.00 0.00 0.00 1.82
26 27 9.300681 GTTGATTGATAATCCTGATTCCCATTA 57.699 33.333 0.00 0.00 37.09 1.90
29 30 6.070656 GGTTGATTGATAATCCTGATTCCCA 58.929 40.000 0.00 0.00 37.09 4.37
37 38 4.261741 GCATTGCGGTTGATTGATAATCCT 60.262 41.667 0.00 0.00 37.09 3.24
55 56 1.404391 CTCCTTGCTAAGCAGGCATTG 59.596 52.381 0.00 0.00 40.61 2.82
56 57 1.684248 CCTCCTTGCTAAGCAGGCATT 60.684 52.381 0.00 0.00 40.61 3.56
60 61 1.452833 GCCCTCCTTGCTAAGCAGG 60.453 63.158 0.00 0.00 40.61 4.85
93 94 4.537135 TCTCAACTACCAAGTGACATCC 57.463 45.455 0.00 0.00 35.62 3.51
97 98 3.323979 TCCCTTCTCAACTACCAAGTGAC 59.676 47.826 0.00 0.00 35.62 3.67
123 124 3.870559 TCCAGAAACTAAGAGGAAGGGT 58.129 45.455 0.00 0.00 0.00 4.34
136 137 1.165270 CCCAACCGTGATCCAGAAAC 58.835 55.000 0.00 0.00 0.00 2.78
142 143 0.751643 CCCATTCCCAACCGTGATCC 60.752 60.000 0.00 0.00 0.00 3.36
143 144 0.254747 TCCCATTCCCAACCGTGATC 59.745 55.000 0.00 0.00 0.00 2.92
172 173 0.999712 CCCAGGTTCCCAACTACCAT 59.000 55.000 0.00 0.00 36.87 3.55
195 196 2.893682 GAAAGAGGACGGGGGCATGG 62.894 65.000 0.00 0.00 0.00 3.66
196 197 1.452108 GAAAGAGGACGGGGGCATG 60.452 63.158 0.00 0.00 0.00 4.06
197 198 1.616628 AGAAAGAGGACGGGGGCAT 60.617 57.895 0.00 0.00 0.00 4.40
198 199 2.203938 AGAAAGAGGACGGGGGCA 60.204 61.111 0.00 0.00 0.00 5.36
199 200 2.585153 GAGAAAGAGGACGGGGGC 59.415 66.667 0.00 0.00 0.00 5.80
205 206 2.494073 AGTCATGACCGAGAAAGAGGAC 59.506 50.000 22.21 0.00 0.00 3.85
222 225 7.060421 AGGATTGAAAGGAGTAAAAACAGTCA 58.940 34.615 0.00 0.00 0.00 3.41
302 305 0.772124 AGGGGAAAAGGGCTCTGACA 60.772 55.000 0.00 0.00 0.00 3.58
311 314 2.610232 CGTTCATGCAAAGGGGAAAAGG 60.610 50.000 0.00 0.00 0.00 3.11
355 361 3.044305 GTGCACTCGACCACAGGC 61.044 66.667 10.32 0.00 32.37 4.85
357 363 0.532862 AAAGGTGCACTCGACCACAG 60.533 55.000 17.98 0.00 35.76 3.66
358 364 0.753867 TAAAGGTGCACTCGACCACA 59.246 50.000 17.98 0.00 35.76 4.17
359 365 2.000447 GATAAAGGTGCACTCGACCAC 59.000 52.381 17.98 0.00 35.76 4.16
360 366 1.621317 TGATAAAGGTGCACTCGACCA 59.379 47.619 17.98 5.61 35.76 4.02
429 435 5.259832 ACTACCACGGATTAGCTTTCTAC 57.740 43.478 0.00 0.00 0.00 2.59
447 457 6.018425 TCTGTATCCAACGTTCGATCTACTAC 60.018 42.308 11.83 5.39 0.00 2.73
448 458 6.018425 GTCTGTATCCAACGTTCGATCTACTA 60.018 42.308 11.83 0.00 0.00 1.82
449 459 4.880120 TCTGTATCCAACGTTCGATCTACT 59.120 41.667 11.83 0.00 0.00 2.57
499 509 2.287368 CGTGGGTTTTCTGCTTGGTTAC 60.287 50.000 0.00 0.00 0.00 2.50
525 535 1.096416 GACTCAGTGTACCGCTAGCT 58.904 55.000 13.93 0.00 0.00 3.32
536 546 1.780806 CTGCAGTCAGTGACTCAGTG 58.219 55.000 27.39 18.91 41.37 3.66
537 547 0.033228 GCTGCAGTCAGTGACTCAGT 59.967 55.000 31.27 13.22 41.37 3.41
538 548 0.033090 TGCTGCAGTCAGTGACTCAG 59.967 55.000 29.37 29.37 41.37 3.35
539 549 0.033090 CTGCTGCAGTCAGTGACTCA 59.967 55.000 23.08 20.18 41.37 3.41
540 550 0.316522 TCTGCTGCAGTCAGTGACTC 59.683 55.000 27.24 17.03 41.37 3.36
541 551 0.975135 ATCTGCTGCAGTCAGTGACT 59.025 50.000 27.24 20.34 44.44 3.41
542 552 1.337541 TGATCTGCTGCAGTCAGTGAC 60.338 52.381 27.24 15.78 42.29 3.67
543 553 0.971386 TGATCTGCTGCAGTCAGTGA 59.029 50.000 27.24 15.79 42.29 3.41
558 568 1.828832 GTCGACGTCACCTGATGATC 58.171 55.000 17.16 0.00 40.28 2.92
619 629 5.183140 ACTTGGTATTGCTAGCATTTTCGTT 59.817 36.000 20.13 0.00 35.40 3.85
620 630 4.700213 ACTTGGTATTGCTAGCATTTTCGT 59.300 37.500 20.13 7.44 35.40 3.85
621 631 5.235305 ACTTGGTATTGCTAGCATTTTCG 57.765 39.130 20.13 6.81 35.40 3.46
622 632 6.311200 CCAAACTTGGTATTGCTAGCATTTTC 59.689 38.462 20.13 11.25 43.43 2.29
623 633 6.165577 CCAAACTTGGTATTGCTAGCATTTT 58.834 36.000 20.13 9.32 43.43 1.82
624 634 5.723295 CCAAACTTGGTATTGCTAGCATTT 58.277 37.500 20.13 10.45 43.43 2.32
747 919 3.569701 TCTTTCTGAATTCTGGTGGTTGC 59.430 43.478 11.89 0.00 0.00 4.17
779 952 1.021390 CATTCTCCTGGGCACGTCAC 61.021 60.000 0.00 0.00 0.00 3.67
806 979 5.656480 GTTCCATAGTTCAAGACTCTCTCC 58.344 45.833 0.00 0.00 39.86 3.71
818 991 3.487544 GCATTTGCCTCGTTCCATAGTTC 60.488 47.826 0.00 0.00 34.31 3.01
925 1109 2.059541 GTGTCGTGTTCTTGAGGTAGC 58.940 52.381 0.00 0.00 0.00 3.58
929 1113 1.853319 GCGTGTCGTGTTCTTGAGG 59.147 57.895 0.00 0.00 0.00 3.86
974 1158 6.426633 GTGGAAGAAGAAGAAGAAGAAGAAGG 59.573 42.308 0.00 0.00 0.00 3.46
1005 1216 2.435059 GAAGGTGACGGGCAGAGC 60.435 66.667 0.00 0.00 0.00 4.09
1071 1292 3.971702 GGGCTGCTCTTGTGGGGT 61.972 66.667 0.00 0.00 0.00 4.95
1185 1406 0.931662 CGCGGCGTATGTACTGGTAC 60.932 60.000 15.36 4.15 36.63 3.34
1314 1550 3.235481 TTGACCAGGGACGCCGAA 61.235 61.111 0.00 0.00 0.00 4.30
1325 1564 1.162698 CGACGAGGAGTAGTTGACCA 58.837 55.000 0.00 0.00 0.00 4.02
1327 1566 0.179169 GCCGACGAGGAGTAGTTGAC 60.179 60.000 0.00 0.00 45.00 3.18
1328 1567 1.642037 CGCCGACGAGGAGTAGTTGA 61.642 60.000 0.00 0.00 45.00 3.18
1359 1598 4.838152 TCGCATGCTTCGAGGGCC 62.838 66.667 17.13 0.00 0.00 5.80
1363 1602 1.449789 CGTAAGATCGCATGCTTCGAG 59.550 52.381 17.13 0.00 39.47 4.04
1377 1616 2.124901 CATTGGCCCCGCGTAAGA 60.125 61.111 4.92 0.00 43.02 2.10
1413 1655 2.163010 CGTCAGGTTGGTGTAGTACGAT 59.837 50.000 0.00 0.00 0.00 3.73
1414 1656 1.536766 CGTCAGGTTGGTGTAGTACGA 59.463 52.381 0.00 0.00 0.00 3.43
1574 1822 2.511600 CGACGAAGGCCATGGACC 60.512 66.667 16.13 15.57 0.00 4.46
1696 1965 2.747855 GCCCTCGAGTTGCCAAGG 60.748 66.667 12.31 4.43 0.00 3.61
1711 1980 2.035237 TATTCCCGTCATCCCGTGCC 62.035 60.000 0.00 0.00 0.00 5.01
1712 1981 0.600255 CTATTCCCGTCATCCCGTGC 60.600 60.000 0.00 0.00 0.00 5.34
1713 1982 0.600255 GCTATTCCCGTCATCCCGTG 60.600 60.000 0.00 0.00 0.00 4.94
1715 1984 0.321671 ATGCTATTCCCGTCATCCCG 59.678 55.000 0.00 0.00 0.00 5.14
1718 1987 2.417719 GGACATGCTATTCCCGTCATC 58.582 52.381 0.00 0.00 0.00 2.92
1719 1988 1.270305 CGGACATGCTATTCCCGTCAT 60.270 52.381 0.00 0.00 35.83 3.06
1720 1989 0.104120 CGGACATGCTATTCCCGTCA 59.896 55.000 0.00 0.00 35.83 4.35
1721 1990 1.222115 GCGGACATGCTATTCCCGTC 61.222 60.000 0.00 0.00 41.95 4.79
1800 2074 0.604578 GCCACCTGCAACATGTTCAT 59.395 50.000 8.48 0.00 40.77 2.57
2133 2414 2.126071 CTCCGTCGCGTTGTGGAT 60.126 61.111 5.77 0.00 0.00 3.41
2486 2837 3.977244 GCACGCACACCCCAAAGG 61.977 66.667 0.00 0.00 43.78 3.11
2642 3002 4.787280 CTCCCCTCCACGCTCCCT 62.787 72.222 0.00 0.00 0.00 4.20
2752 3113 2.074576 CCACTCACTCAATGTCAGCAG 58.925 52.381 0.00 0.00 0.00 4.24
2834 3209 0.443869 CCGTGGATTCACTTTGCTCG 59.556 55.000 1.86 0.00 41.53 5.03
2848 3223 2.902846 TTGGCAACCGAACCGTGG 60.903 61.111 0.00 0.00 0.00 4.94
2858 3233 0.952010 ACGACGGTATGGTTGGCAAC 60.952 55.000 21.92 21.92 0.00 4.17
2859 3234 0.671163 GACGACGGTATGGTTGGCAA 60.671 55.000 0.00 0.00 29.08 4.52
2860 3235 1.079681 GACGACGGTATGGTTGGCA 60.080 57.895 0.00 0.00 29.08 4.92
2861 3236 1.082117 CAGACGACGGTATGGTTGGC 61.082 60.000 0.00 0.00 31.77 4.52
2862 3237 0.245539 ACAGACGACGGTATGGTTGG 59.754 55.000 0.00 0.00 39.67 3.77
2863 3238 1.201647 AGACAGACGACGGTATGGTTG 59.798 52.381 0.00 0.00 39.67 3.77
2864 3239 1.542492 AGACAGACGACGGTATGGTT 58.458 50.000 0.00 0.00 39.67 3.67
2865 3240 1.542492 AAGACAGACGACGGTATGGT 58.458 50.000 0.00 0.00 39.67 3.55
2866 3241 2.163815 AGAAAGACAGACGACGGTATGG 59.836 50.000 0.00 0.00 39.67 2.74
2867 3242 3.172050 CAGAAAGACAGACGACGGTATG 58.828 50.000 0.00 0.00 41.13 2.39
2868 3243 2.818432 ACAGAAAGACAGACGACGGTAT 59.182 45.455 0.00 0.00 0.00 2.73
2869 3244 2.224606 ACAGAAAGACAGACGACGGTA 58.775 47.619 0.00 0.00 0.00 4.02
2870 3245 1.001597 GACAGAAAGACAGACGACGGT 60.002 52.381 0.00 0.00 0.00 4.83
2871 3246 1.267261 AGACAGAAAGACAGACGACGG 59.733 52.381 0.00 0.00 0.00 4.79
2872 3247 2.287069 ACAGACAGAAAGACAGACGACG 60.287 50.000 0.00 0.00 0.00 5.12
2873 3248 3.046390 CACAGACAGAAAGACAGACGAC 58.954 50.000 0.00 0.00 0.00 4.34
2874 3249 2.688446 ACACAGACAGAAAGACAGACGA 59.312 45.455 0.00 0.00 0.00 4.20
2875 3250 2.791560 CACACAGACAGAAAGACAGACG 59.208 50.000 0.00 0.00 0.00 4.18
2876 3251 3.786635 ACACACAGACAGAAAGACAGAC 58.213 45.455 0.00 0.00 0.00 3.51
2877 3252 3.701542 AGACACACAGACAGAAAGACAGA 59.298 43.478 0.00 0.00 0.00 3.41
2878 3253 3.801050 CAGACACACAGACAGAAAGACAG 59.199 47.826 0.00 0.00 0.00 3.51
2879 3254 3.195610 ACAGACACACAGACAGAAAGACA 59.804 43.478 0.00 0.00 0.00 3.41
2880 3255 3.553511 CACAGACACACAGACAGAAAGAC 59.446 47.826 0.00 0.00 0.00 3.01
2881 3256 3.195610 ACACAGACACACAGACAGAAAGA 59.804 43.478 0.00 0.00 0.00 2.52
2882 3257 3.308053 CACACAGACACACAGACAGAAAG 59.692 47.826 0.00 0.00 0.00 2.62
2883 3258 3.261580 CACACAGACACACAGACAGAAA 58.738 45.455 0.00 0.00 0.00 2.52
2884 3259 2.233676 ACACACAGACACACAGACAGAA 59.766 45.455 0.00 0.00 0.00 3.02
2885 3260 1.824852 ACACACAGACACACAGACAGA 59.175 47.619 0.00 0.00 0.00 3.41
2886 3261 1.929169 CACACACAGACACACAGACAG 59.071 52.381 0.00 0.00 0.00 3.51
2887 3262 1.275010 ACACACACAGACACACAGACA 59.725 47.619 0.00 0.00 0.00 3.41
2888 3263 1.927174 GACACACACAGACACACAGAC 59.073 52.381 0.00 0.00 0.00 3.51
2889 3264 1.824852 AGACACACACAGACACACAGA 59.175 47.619 0.00 0.00 0.00 3.41
2890 3265 1.929169 CAGACACACACAGACACACAG 59.071 52.381 0.00 0.00 0.00 3.66
2891 3266 1.275010 ACAGACACACACAGACACACA 59.725 47.619 0.00 0.00 0.00 3.72
2892 3267 2.010145 ACAGACACACACAGACACAC 57.990 50.000 0.00 0.00 0.00 3.82
2893 3268 2.758423 AGTACAGACACACACAGACACA 59.242 45.455 0.00 0.00 0.00 3.72
2894 3269 3.438297 AGTACAGACACACACAGACAC 57.562 47.619 0.00 0.00 0.00 3.67
2895 3270 3.004419 GCTAGTACAGACACACACAGACA 59.996 47.826 0.00 0.00 0.00 3.41
2896 3271 3.004419 TGCTAGTACAGACACACACAGAC 59.996 47.826 0.00 0.00 0.00 3.51
2897 3272 3.219281 TGCTAGTACAGACACACACAGA 58.781 45.455 0.00 0.00 0.00 3.41
2898 3273 3.569548 CTGCTAGTACAGACACACACAG 58.430 50.000 0.00 0.00 40.25 3.66
2899 3274 2.296190 CCTGCTAGTACAGACACACACA 59.704 50.000 0.00 0.00 40.25 3.72
2900 3275 2.352814 CCCTGCTAGTACAGACACACAC 60.353 54.545 0.00 0.00 40.25 3.82
2901 3276 1.893137 CCCTGCTAGTACAGACACACA 59.107 52.381 0.00 0.00 40.25 3.72
2902 3277 1.893801 ACCCTGCTAGTACAGACACAC 59.106 52.381 0.00 0.00 40.25 3.82
2903 3278 2.304221 ACCCTGCTAGTACAGACACA 57.696 50.000 0.00 0.00 40.25 3.72
2904 3279 3.258622 AGAAACCCTGCTAGTACAGACAC 59.741 47.826 0.00 0.00 40.25 3.67
2905 3280 3.507411 AGAAACCCTGCTAGTACAGACA 58.493 45.455 0.00 0.00 40.25 3.41
2906 3281 3.119065 GGAGAAACCCTGCTAGTACAGAC 60.119 52.174 0.00 0.00 40.25 3.51
2907 3282 3.097614 GGAGAAACCCTGCTAGTACAGA 58.902 50.000 0.00 0.00 40.25 3.41
2908 3283 3.100671 AGGAGAAACCCTGCTAGTACAG 58.899 50.000 0.00 0.00 42.13 2.74
2909 3284 3.185880 AGGAGAAACCCTGCTAGTACA 57.814 47.619 0.00 0.00 42.13 2.90
2910 3285 3.118702 GGAAGGAGAAACCCTGCTAGTAC 60.119 52.174 0.00 0.00 43.21 2.73
2911 3286 3.105283 GGAAGGAGAAACCCTGCTAGTA 58.895 50.000 0.00 0.00 43.21 1.82
2912 3287 1.909986 GGAAGGAGAAACCCTGCTAGT 59.090 52.381 0.00 0.00 43.21 2.57
2913 3288 1.210722 GGGAAGGAGAAACCCTGCTAG 59.789 57.143 0.00 0.00 43.21 3.42
2914 3289 1.286248 GGGAAGGAGAAACCCTGCTA 58.714 55.000 0.00 0.00 43.21 3.49
2915 3290 1.501654 GGGGAAGGAGAAACCCTGCT 61.502 60.000 0.00 0.00 46.19 4.24
2916 3291 1.000771 GGGGAAGGAGAAACCCTGC 60.001 63.158 0.00 0.00 42.86 4.85
2919 3294 2.706723 GAGATAGGGGAAGGAGAAACCC 59.293 54.545 0.00 0.00 43.69 4.11
2920 3295 2.706723 GGAGATAGGGGAAGGAGAAACC 59.293 54.545 0.00 0.00 39.35 3.27
2921 3296 3.134985 GTGGAGATAGGGGAAGGAGAAAC 59.865 52.174 0.00 0.00 0.00 2.78
2922 3297 3.014110 AGTGGAGATAGGGGAAGGAGAAA 59.986 47.826 0.00 0.00 0.00 2.52
2923 3298 2.592512 AGTGGAGATAGGGGAAGGAGAA 59.407 50.000 0.00 0.00 0.00 2.87
2924 3299 2.178106 GAGTGGAGATAGGGGAAGGAGA 59.822 54.545 0.00 0.00 0.00 3.71
2925 3300 2.178984 AGAGTGGAGATAGGGGAAGGAG 59.821 54.545 0.00 0.00 0.00 3.69
2926 3301 2.178106 GAGAGTGGAGATAGGGGAAGGA 59.822 54.545 0.00 0.00 0.00 3.36
2927 3302 2.604139 GAGAGTGGAGATAGGGGAAGG 58.396 57.143 0.00 0.00 0.00 3.46
2928 3303 2.178984 AGGAGAGTGGAGATAGGGGAAG 59.821 54.545 0.00 0.00 0.00 3.46
2929 3304 2.178106 GAGGAGAGTGGAGATAGGGGAA 59.822 54.545 0.00 0.00 0.00 3.97
2930 3305 1.783979 GAGGAGAGTGGAGATAGGGGA 59.216 57.143 0.00 0.00 0.00 4.81
2931 3306 1.786441 AGAGGAGAGTGGAGATAGGGG 59.214 57.143 0.00 0.00 0.00 4.79
2932 3307 2.552155 CGAGAGGAGAGTGGAGATAGGG 60.552 59.091 0.00 0.00 0.00 3.53
2933 3308 2.778299 CGAGAGGAGAGTGGAGATAGG 58.222 57.143 0.00 0.00 0.00 2.57
2934 3309 2.151202 GCGAGAGGAGAGTGGAGATAG 58.849 57.143 0.00 0.00 0.00 2.08
2935 3310 1.541452 CGCGAGAGGAGAGTGGAGATA 60.541 57.143 0.00 0.00 0.00 1.98
2936 3311 0.817634 CGCGAGAGGAGAGTGGAGAT 60.818 60.000 0.00 0.00 0.00 2.75
2937 3312 1.450491 CGCGAGAGGAGAGTGGAGA 60.450 63.158 0.00 0.00 0.00 3.71
2938 3313 2.477176 CCGCGAGAGGAGAGTGGAG 61.477 68.421 8.23 0.00 37.73 3.86
2939 3314 2.438614 CCGCGAGAGGAGAGTGGA 60.439 66.667 8.23 0.00 37.73 4.02
2940 3315 4.200283 GCCGCGAGAGGAGAGTGG 62.200 72.222 8.23 0.00 38.48 4.00
2941 3316 4.544689 CGCCGCGAGAGGAGAGTG 62.545 72.222 8.23 0.00 32.51 3.51
3105 3480 4.854924 CGCCGGCCATGACCATGA 62.855 66.667 23.46 0.00 41.20 3.07
3623 4010 5.172205 CGTCATCCGATCTACTGATCTAGA 58.828 45.833 0.00 0.00 45.10 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.