Multiple sequence alignment - TraesCS6B01G186600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G186600 chr6B 100.000 5784 0 0 2623 8406 212629553 212623770 0.000000e+00 10682.0
1 TraesCS6B01G186600 chr6B 100.000 2238 0 0 1 2238 212632175 212629938 0.000000e+00 4133.0
2 TraesCS6B01G186600 chr6B 83.041 1480 215 22 5414 6862 643264124 643265598 0.000000e+00 1310.0
3 TraesCS6B01G186600 chr6B 78.710 930 150 29 2898 3790 643262409 643263327 2.030000e-160 577.0
4 TraesCS6B01G186600 chr6B 97.345 113 3 0 1711 1823 212630102 212629990 8.610000e-45 193.0
5 TraesCS6B01G186600 chr6B 97.345 113 3 0 2074 2186 212630465 212630353 8.610000e-45 193.0
6 TraesCS6B01G186600 chr6A 94.755 5548 230 29 2894 8406 158907250 158912771 0.000000e+00 8576.0
7 TraesCS6B01G186600 chr6A 83.543 1908 263 25 4989 6862 572136563 572138453 0.000000e+00 1736.0
8 TraesCS6B01G186600 chr6A 89.202 1065 68 21 1 1030 158904348 158905400 0.000000e+00 1286.0
9 TraesCS6B01G186600 chr6A 91.562 877 36 11 1034 1898 158905666 158906516 0.000000e+00 1175.0
10 TraesCS6B01G186600 chr6A 78.503 935 156 26 2902 3802 572134924 572135847 9.470000e-159 571.0
11 TraesCS6B01G186600 chr6A 96.875 160 5 0 1900 2059 158906602 158906761 1.390000e-67 268.0
12 TraesCS6B01G186600 chr6A 92.308 195 4 1 2696 2879 158907074 158907268 5.000000e-67 267.0
13 TraesCS6B01G186600 chr6A 89.189 111 12 0 4044 4154 50348989 50348879 1.140000e-28 139.0
14 TraesCS6B01G186600 chr6A 79.330 179 7 4 2075 2236 158906349 158906514 1.930000e-16 99.0
15 TraesCS6B01G186600 chr6D 96.273 3300 99 9 4268 7551 120649773 120653064 0.000000e+00 5391.0
16 TraesCS6B01G186600 chr6D 94.109 1341 60 4 2890 4212 120648431 120649770 0.000000e+00 2021.0
17 TraesCS6B01G186600 chr6D 91.176 1326 72 19 1 1296 120645926 120647236 0.000000e+00 1759.0
18 TraesCS6B01G186600 chr6D 83.106 1906 265 29 4989 6862 427483218 427485098 0.000000e+00 1683.0
19 TraesCS6B01G186600 chr6D 93.986 582 23 5 1489 2069 120647653 120648223 0.000000e+00 870.0
20 TraesCS6B01G186600 chr6D 93.525 417 23 3 7590 8002 120653058 120653474 1.200000e-172 617.0
21 TraesCS6B01G186600 chr6D 78.717 935 154 26 2902 3802 427481506 427482429 4.370000e-162 582.0
22 TraesCS6B01G186600 chr6D 93.365 211 6 2 2656 2858 120648230 120648440 1.060000e-78 305.0
23 TraesCS6B01G186600 chr6D 92.523 214 10 4 8067 8279 120653470 120653678 1.370000e-77 302.0
24 TraesCS6B01G186600 chr6D 93.836 146 6 1 8233 8375 120653679 120653824 5.110000e-52 217.0
25 TraesCS6B01G186600 chr6D 89.404 151 8 1 1292 1434 120647318 120647468 5.180000e-42 183.0
26 TraesCS6B01G186600 chr6D 86.188 181 7 4 2074 2236 120647873 120648053 6.700000e-41 180.0
27 TraesCS6B01G186600 chrUn 81.016 1733 286 22 5163 6862 108321537 108323259 0.000000e+00 1338.0
28 TraesCS6B01G186600 chrUn 80.221 1087 193 15 5799 6865 331495126 331496210 0.000000e+00 797.0
29 TraesCS6B01G186600 chrUn 82.609 276 38 6 3880 4147 134254136 134253863 1.410000e-57 235.0
30 TraesCS6B01G186600 chrUn 82.609 276 38 6 3880 4147 134267694 134267967 1.410000e-57 235.0
31 TraesCS6B01G186600 chr3D 78.541 1906 336 45 4989 6862 561171970 561173834 0.000000e+00 1186.0
32 TraesCS6B01G186600 chr3D 77.900 1905 337 47 4989 6862 561375482 561377333 0.000000e+00 1109.0
33 TraesCS6B01G186600 chr3B 78.380 1901 346 45 4989 6865 747822317 747824176 0.000000e+00 1173.0
34 TraesCS6B01G186600 chr3B 75.833 1080 214 31 3180 4229 748451658 748452720 9.740000e-139 505.0
35 TraesCS6B01G186600 chr3B 75.992 504 88 19 4495 4987 748453009 748453490 6.560000e-56 230.0
36 TraesCS6B01G186600 chr3B 74.257 505 93 22 4495 4987 748413408 748413887 2.410000e-40 178.0
37 TraesCS6B01G186600 chr5D 80.037 1613 276 33 5272 6848 355203507 355205109 0.000000e+00 1153.0
38 TraesCS6B01G186600 chr5D 77.211 294 49 14 2894 3182 355199962 355200242 1.130000e-33 156.0
39 TraesCS6B01G186600 chr5A 80.087 1602 274 33 5282 6848 457435700 457437291 0.000000e+00 1149.0
40 TraesCS6B01G186600 chr5A 77.133 293 51 11 2894 3182 457432335 457432615 1.130000e-33 156.0
41 TraesCS6B01G186600 chr5A 76.452 310 51 13 4052 4355 705071811 705072104 1.890000e-31 148.0
42 TraesCS6B01G186600 chr5A 76.452 310 51 13 4052 4355 705085651 705085944 1.890000e-31 148.0
43 TraesCS6B01G186600 chr5B 79.975 1608 268 37 5272 6848 419998322 419999906 0.000000e+00 1136.0
44 TraesCS6B01G186600 chr5B 77.778 288 45 12 2907 3182 419996010 419996290 8.730000e-35 159.0
45 TraesCS6B01G186600 chr3A 76.497 2255 420 64 4678 6865 697373604 697375815 0.000000e+00 1127.0
46 TraesCS6B01G186600 chr3A 75.621 1087 208 38 3180 4229 697275396 697276462 3.530000e-133 486.0
47 TraesCS6B01G186600 chr3A 82.800 250 43 0 6079 6328 678425205 678424956 3.050000e-54 224.0
48 TraesCS6B01G186600 chr3A 75.644 505 88 20 4495 4987 697276751 697277232 1.420000e-52 219.0
49 TraesCS6B01G186600 chr7B 94.212 311 9 6 8024 8330 522383994 522383689 4.600000e-127 466.0
50 TraesCS6B01G186600 chr4A 74.586 665 130 28 3579 4229 658402580 658401941 1.080000e-63 255.0
51 TraesCS6B01G186600 chr1D 100.000 38 0 0 2818 2855 316619703 316619666 4.210000e-08 71.3
52 TraesCS6B01G186600 chr1B 95.455 44 1 1 2818 2860 4516636 4516679 1.510000e-07 69.4
53 TraesCS6B01G186600 chr1B 97.368 38 1 0 2818 2855 428723303 428723266 1.960000e-06 65.8
54 TraesCS6B01G186600 chr1A 100.000 37 0 0 2818 2854 397738760 397738724 1.510000e-07 69.4
55 TraesCS6B01G186600 chr2D 97.368 38 1 0 2818 2855 172409713 172409750 1.960000e-06 65.8
56 TraesCS6B01G186600 chr2D 94.872 39 2 0 2818 2856 27924491 27924453 2.530000e-05 62.1
57 TraesCS6B01G186600 chr2A 97.368 38 1 0 2818 2855 177658362 177658325 1.960000e-06 65.8
58 TraesCS6B01G186600 chr4B 93.182 44 2 1 4989 5032 625975131 625975173 7.040000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G186600 chr6B 212623770 212632175 8405 True 3800.250000 10682 98.6725 1 8406 4 chr6B.!!$R1 8405
1 TraesCS6B01G186600 chr6B 643262409 643265598 3189 False 943.500000 1310 80.8755 2898 6862 2 chr6B.!!$F1 3964
2 TraesCS6B01G186600 chr6A 158904348 158912771 8423 False 1945.166667 8576 90.6720 1 8406 6 chr6A.!!$F1 8405
3 TraesCS6B01G186600 chr6A 572134924 572138453 3529 False 1153.500000 1736 81.0230 2902 6862 2 chr6A.!!$F2 3960
4 TraesCS6B01G186600 chr6D 120645926 120653824 7898 False 1184.500000 5391 92.4385 1 8375 10 chr6D.!!$F1 8374
5 TraesCS6B01G186600 chr6D 427481506 427485098 3592 False 1132.500000 1683 80.9115 2902 6862 2 chr6D.!!$F2 3960
6 TraesCS6B01G186600 chrUn 108321537 108323259 1722 False 1338.000000 1338 81.0160 5163 6862 1 chrUn.!!$F1 1699
7 TraesCS6B01G186600 chrUn 331495126 331496210 1084 False 797.000000 797 80.2210 5799 6865 1 chrUn.!!$F3 1066
8 TraesCS6B01G186600 chr3D 561171970 561173834 1864 False 1186.000000 1186 78.5410 4989 6862 1 chr3D.!!$F1 1873
9 TraesCS6B01G186600 chr3D 561375482 561377333 1851 False 1109.000000 1109 77.9000 4989 6862 1 chr3D.!!$F2 1873
10 TraesCS6B01G186600 chr3B 747822317 747824176 1859 False 1173.000000 1173 78.3800 4989 6865 1 chr3B.!!$F1 1876
11 TraesCS6B01G186600 chr3B 748451658 748453490 1832 False 367.500000 505 75.9125 3180 4987 2 chr3B.!!$F3 1807
12 TraesCS6B01G186600 chr5D 355199962 355205109 5147 False 654.500000 1153 78.6240 2894 6848 2 chr5D.!!$F1 3954
13 TraesCS6B01G186600 chr5A 457432335 457437291 4956 False 652.500000 1149 78.6100 2894 6848 2 chr5A.!!$F3 3954
14 TraesCS6B01G186600 chr5B 419996010 419999906 3896 False 647.500000 1136 78.8765 2907 6848 2 chr5B.!!$F1 3941
15 TraesCS6B01G186600 chr3A 697373604 697375815 2211 False 1127.000000 1127 76.4970 4678 6865 1 chr3A.!!$F1 2187
16 TraesCS6B01G186600 chr3A 697275396 697277232 1836 False 352.500000 486 75.6325 3180 4987 2 chr3A.!!$F2 1807
17 TraesCS6B01G186600 chr4A 658401941 658402580 639 True 255.000000 255 74.5860 3579 4229 1 chr4A.!!$R1 650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
679 698 0.250338 ACCACTTTTCTCACGCCTCC 60.250 55.000 0.00 0.0 0.00 4.30 F
2163 2797 0.388391 CGCCGCATGGTCATTTGTTT 60.388 50.000 0.00 0.0 37.67 2.83 F
3450 4168 0.033920 CTGGGCTTTTGTTTCCAGGC 59.966 55.000 0.00 0.0 42.12 4.85 F
3460 4178 1.230324 GTTTCCAGGCCATAGCGATC 58.770 55.000 5.01 0.0 41.24 3.69 F
5190 7722 1.197721 CGTCATTCTCAAACAGCACCC 59.802 52.381 0.00 0.0 0.00 4.61 F
6508 9208 0.393077 CACAAGGGGAGTCGTCAAGT 59.607 55.000 0.00 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2190 2824 0.179094 TTCGACCTGTGTGTGACCAC 60.179 55.0 0.00 0.00 42.19 4.16 R
3997 4862 0.395311 CTCAGCGGGAGGTACTGGTA 60.395 60.0 0.00 0.00 41.55 3.25 R
4389 5318 0.111061 AGTGATGAGCTGGGTTGCAA 59.889 50.0 0.00 0.00 34.99 4.08 R
5359 8015 1.506493 CCAACTGAGTGACTGCTGAC 58.494 55.0 0.00 0.00 0.00 3.51 R
6820 9523 0.443869 CCAATCACCAAGTCGAAGCG 59.556 55.0 0.00 0.00 0.00 4.68 R
7846 10565 0.250252 TGAAAGCGACATGAGGCACA 60.250 50.0 13.59 8.53 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.176181 CGCTACAACACATAAACAACTAATTTT 57.824 29.630 0.00 0.00 0.00 1.82
101 102 5.982890 AAAGATAAAGGTGGACATGGTTG 57.017 39.130 0.00 0.00 0.00 3.77
102 103 4.657814 AGATAAAGGTGGACATGGTTGT 57.342 40.909 0.00 0.00 39.32 3.32
119 121 2.046988 TGCGAGCACCCACATGAG 60.047 61.111 0.00 0.00 0.00 2.90
185 188 8.726988 TCTAAAATTTTGGGTATCGAACTTGAG 58.273 33.333 13.76 0.00 0.00 3.02
209 212 7.665690 AGCGATCATTCTACTCAAGTATGAAT 58.334 34.615 0.00 4.53 42.95 2.57
284 287 8.908903 TGACGGCTTATTATTCATAAAATGGTT 58.091 29.630 0.00 0.00 0.00 3.67
355 360 0.464870 TGTCGTTCCCTCGGAAAACA 59.535 50.000 0.00 0.83 43.86 2.83
389 394 8.299262 GAGCATCGACTATGTATGTTACAAAT 57.701 34.615 0.00 0.00 42.76 2.32
450 455 0.437295 ATTCGTAAAGCGTGCGTGTC 59.563 50.000 1.43 0.00 42.13 3.67
485 490 2.080286 ACTCTGCGTTGACCATACAC 57.920 50.000 0.00 0.00 0.00 2.90
500 505 8.491045 TGACCATACACTTATGAATGGAGATA 57.509 34.615 7.18 0.00 41.20 1.98
646 664 5.014123 ACCGGTCCACCATCATTATTATCAT 59.986 40.000 0.00 0.00 35.14 2.45
655 673 6.650807 ACCATCATTATTATCATCACCGACAC 59.349 38.462 0.00 0.00 0.00 3.67
658 677 6.455647 TCATTATTATCATCACCGACACCTC 58.544 40.000 0.00 0.00 0.00 3.85
663 682 1.535444 ATCACCGACACCTCCACCA 60.535 57.895 0.00 0.00 0.00 4.17
679 698 0.250338 ACCACTTTTCTCACGCCTCC 60.250 55.000 0.00 0.00 0.00 4.30
775 811 4.926238 CAGAACACATAAAAGTCTCGCTCT 59.074 41.667 0.00 0.00 0.00 4.09
1203 1516 3.411446 TCGTGCTGAAATTTCCACTGAT 58.589 40.909 15.48 0.00 0.00 2.90
1233 1546 8.518702 AGCTCTTATGAAAGATTCCTTTGTTTC 58.481 33.333 0.00 0.00 42.30 2.78
1284 1597 2.279784 CGATGCGGAGGAAGCTCC 60.280 66.667 0.00 0.00 40.04 4.70
1303 1616 9.087424 GAAGCTCCCATGTTTATTATTTTTGAC 57.913 33.333 0.00 0.00 0.00 3.18
1305 1618 6.019881 GCTCCCATGTTTATTATTTTTGACGC 60.020 38.462 0.00 0.00 0.00 5.19
1436 1843 2.076863 GGTGAGTTTGTTCGATGAGGG 58.923 52.381 0.00 0.00 0.00 4.30
1437 1844 2.076863 GTGAGTTTGTTCGATGAGGGG 58.923 52.381 0.00 0.00 0.00 4.79
1467 1874 1.079127 CGATGCGTTCCAGACCCTT 60.079 57.895 0.00 0.00 0.00 3.95
1505 2042 1.944177 ATATAGCGGACCAGGCATCT 58.056 50.000 0.00 0.00 0.00 2.90
1506 2043 2.597578 TATAGCGGACCAGGCATCTA 57.402 50.000 0.00 0.00 0.00 1.98
1552 2089 0.683973 CAGCCTCTGTCCTTGTCTGT 59.316 55.000 0.00 0.00 0.00 3.41
1606 2143 2.158842 ACCAGATAAGATGCTGCAGTCC 60.159 50.000 16.64 4.82 0.00 3.85
1616 2153 2.771089 TGCTGCAGTCCTTAGTCAAAG 58.229 47.619 16.64 0.00 34.73 2.77
1662 2199 1.491505 GCGCCGGCTAAACTCTCATC 61.492 60.000 26.68 0.00 35.83 2.92
1706 2243 8.785946 TCCATTTGATCTGATATACGTACGTTA 58.214 33.333 27.92 17.75 0.00 3.18
1758 2295 4.388165 CACTAGAGTTGAATGACACTGCTG 59.612 45.833 0.00 0.00 0.00 4.41
1759 2296 3.758755 AGAGTTGAATGACACTGCTGA 57.241 42.857 0.00 0.00 0.00 4.26
1760 2297 4.283363 AGAGTTGAATGACACTGCTGAT 57.717 40.909 0.00 0.00 0.00 2.90
1761 2298 4.649692 AGAGTTGAATGACACTGCTGATT 58.350 39.130 0.00 0.00 0.00 2.57
1762 2299 5.068636 AGAGTTGAATGACACTGCTGATTT 58.931 37.500 0.00 0.00 0.00 2.17
1763 2300 5.180868 AGAGTTGAATGACACTGCTGATTTC 59.819 40.000 0.00 0.00 0.00 2.17
1764 2301 4.823442 AGTTGAATGACACTGCTGATTTCA 59.177 37.500 0.00 0.00 0.00 2.69
1765 2302 4.754372 TGAATGACACTGCTGATTTCAC 57.246 40.909 0.00 0.00 0.00 3.18
1766 2303 4.392047 TGAATGACACTGCTGATTTCACT 58.608 39.130 0.00 0.00 0.00 3.41
1767 2304 4.823442 TGAATGACACTGCTGATTTCACTT 59.177 37.500 0.00 0.00 0.00 3.16
1768 2305 5.300034 TGAATGACACTGCTGATTTCACTTT 59.700 36.000 0.00 0.00 0.00 2.66
1769 2306 4.818534 TGACACTGCTGATTTCACTTTC 57.181 40.909 0.00 0.00 0.00 2.62
1876 2426 4.691216 AGCATTAACAGGTCGAAACTCTTC 59.309 41.667 0.00 0.00 0.00 2.87
1937 2571 5.986741 TCGCACTTCAGTTAGTACATTTGAA 59.013 36.000 0.00 0.00 0.00 2.69
2065 2699 5.244178 ACCTGGTCGATCTAATCACCTATTC 59.756 44.000 0.00 0.00 34.02 1.75
2066 2700 5.478679 CCTGGTCGATCTAATCACCTATTCT 59.521 44.000 0.00 0.00 34.02 2.40
2067 2701 6.659668 CCTGGTCGATCTAATCACCTATTCTA 59.340 42.308 0.00 0.00 34.02 2.10
2068 2702 7.148154 CCTGGTCGATCTAATCACCTATTCTAG 60.148 44.444 0.00 0.00 34.02 2.43
2089 2723 8.668510 TCTAGGTGATAATCTTTCTTTGATGC 57.331 34.615 0.00 0.00 0.00 3.91
2090 2724 8.267183 TCTAGGTGATAATCTTTCTTTGATGCA 58.733 33.333 0.00 0.00 0.00 3.96
2091 2725 7.893124 AGGTGATAATCTTTCTTTGATGCAT 57.107 32.000 0.00 0.00 0.00 3.96
2092 2726 8.302515 AGGTGATAATCTTTCTTTGATGCATT 57.697 30.769 0.00 0.00 0.00 3.56
2093 2727 8.411683 AGGTGATAATCTTTCTTTGATGCATTC 58.588 33.333 0.00 0.00 0.00 2.67
2094 2728 8.411683 GGTGATAATCTTTCTTTGATGCATTCT 58.588 33.333 0.00 0.00 0.00 2.40
2095 2729 9.234384 GTGATAATCTTTCTTTGATGCATTCTG 57.766 33.333 0.00 0.00 0.00 3.02
2096 2730 9.181061 TGATAATCTTTCTTTGATGCATTCTGA 57.819 29.630 0.00 0.00 0.00 3.27
2097 2731 9.666626 GATAATCTTTCTTTGATGCATTCTGAG 57.333 33.333 0.00 0.00 0.00 3.35
2098 2732 5.306532 TCTTTCTTTGATGCATTCTGAGC 57.693 39.130 0.00 0.00 0.00 4.26
2100 2734 4.430137 TTCTTTGATGCATTCTGAGCAC 57.570 40.909 0.00 0.00 45.95 4.40
2101 2735 3.682696 TCTTTGATGCATTCTGAGCACT 58.317 40.909 0.00 0.00 45.95 4.40
2102 2736 4.835678 TCTTTGATGCATTCTGAGCACTA 58.164 39.130 0.00 0.00 45.95 2.74
2103 2737 4.874396 TCTTTGATGCATTCTGAGCACTAG 59.126 41.667 0.00 0.00 45.95 2.57
2104 2738 4.476628 TTGATGCATTCTGAGCACTAGA 57.523 40.909 0.00 0.00 45.95 2.43
2105 2739 4.056092 TGATGCATTCTGAGCACTAGAG 57.944 45.455 0.00 0.00 45.95 2.43
2106 2740 3.450096 TGATGCATTCTGAGCACTAGAGT 59.550 43.478 0.00 0.00 45.95 3.24
2107 2741 3.969287 TGCATTCTGAGCACTAGAGTT 57.031 42.857 0.00 0.00 37.02 3.01
2108 2742 3.593096 TGCATTCTGAGCACTAGAGTTG 58.407 45.455 0.00 0.00 37.02 3.16
2109 2743 3.259123 TGCATTCTGAGCACTAGAGTTGA 59.741 43.478 0.00 0.00 37.02 3.18
2110 2744 4.248859 GCATTCTGAGCACTAGAGTTGAA 58.751 43.478 0.00 0.00 0.00 2.69
2111 2745 4.874966 GCATTCTGAGCACTAGAGTTGAAT 59.125 41.667 0.00 0.00 0.00 2.57
2112 2746 5.220624 GCATTCTGAGCACTAGAGTTGAATG 60.221 44.000 0.00 9.50 41.09 2.67
2113 2747 5.728637 TTCTGAGCACTAGAGTTGAATGA 57.271 39.130 0.00 0.00 0.00 2.57
2114 2748 5.065704 TCTGAGCACTAGAGTTGAATGAC 57.934 43.478 0.00 0.00 0.00 3.06
2115 2749 4.524328 TCTGAGCACTAGAGTTGAATGACA 59.476 41.667 0.00 0.00 0.00 3.58
2116 2750 4.560128 TGAGCACTAGAGTTGAATGACAC 58.440 43.478 0.00 0.00 0.00 3.67
2117 2751 4.281941 TGAGCACTAGAGTTGAATGACACT 59.718 41.667 0.00 0.00 0.00 3.55
2118 2752 4.564041 AGCACTAGAGTTGAATGACACTG 58.436 43.478 0.00 0.00 0.00 3.66
2119 2753 3.124297 GCACTAGAGTTGAATGACACTGC 59.876 47.826 0.00 0.00 0.00 4.40
2120 2754 4.564041 CACTAGAGTTGAATGACACTGCT 58.436 43.478 0.00 0.00 0.00 4.24
2121 2755 4.388165 CACTAGAGTTGAATGACACTGCTG 59.612 45.833 0.00 0.00 0.00 4.41
2122 2756 3.758755 AGAGTTGAATGACACTGCTGA 57.241 42.857 0.00 0.00 0.00 4.26
2123 2757 4.283363 AGAGTTGAATGACACTGCTGAT 57.717 40.909 0.00 0.00 0.00 2.90
2124 2758 4.649692 AGAGTTGAATGACACTGCTGATT 58.350 39.130 0.00 0.00 0.00 2.57
2125 2759 5.068636 AGAGTTGAATGACACTGCTGATTT 58.931 37.500 0.00 0.00 0.00 2.17
2126 2760 5.180868 AGAGTTGAATGACACTGCTGATTTC 59.819 40.000 0.00 0.00 0.00 2.17
2127 2761 4.823442 AGTTGAATGACACTGCTGATTTCA 59.177 37.500 0.00 0.00 0.00 2.69
2128 2762 4.754372 TGAATGACACTGCTGATTTCAC 57.246 40.909 0.00 0.00 0.00 3.18
2129 2763 4.392047 TGAATGACACTGCTGATTTCACT 58.608 39.130 0.00 0.00 0.00 3.41
2130 2764 4.823442 TGAATGACACTGCTGATTTCACTT 59.177 37.500 0.00 0.00 0.00 3.16
2131 2765 5.300034 TGAATGACACTGCTGATTTCACTTT 59.700 36.000 0.00 0.00 0.00 2.66
2132 2766 4.818534 TGACACTGCTGATTTCACTTTC 57.181 40.909 0.00 0.00 0.00 2.62
2133 2767 3.248363 TGACACTGCTGATTTCACTTTCG 59.752 43.478 0.00 0.00 0.00 3.46
2134 2768 2.549754 ACACTGCTGATTTCACTTTCGG 59.450 45.455 0.00 0.00 0.00 4.30
2135 2769 2.095567 CACTGCTGATTTCACTTTCGGG 60.096 50.000 0.00 0.00 0.00 5.14
2136 2770 2.224523 ACTGCTGATTTCACTTTCGGGA 60.225 45.455 0.00 0.00 0.00 5.14
2137 2771 3.012518 CTGCTGATTTCACTTTCGGGAT 58.987 45.455 0.00 0.00 0.00 3.85
2138 2772 3.420893 TGCTGATTTCACTTTCGGGATT 58.579 40.909 0.00 0.00 0.00 3.01
2139 2773 3.826157 TGCTGATTTCACTTTCGGGATTT 59.174 39.130 0.00 0.00 0.00 2.17
2140 2774 4.082787 TGCTGATTTCACTTTCGGGATTTC 60.083 41.667 0.00 0.00 0.00 2.17
2141 2775 4.651994 CTGATTTCACTTTCGGGATTTCG 58.348 43.478 0.00 0.00 0.00 3.46
2142 2776 3.438781 TGATTTCACTTTCGGGATTTCGG 59.561 43.478 0.00 0.00 0.00 4.30
2143 2777 1.161843 TTCACTTTCGGGATTTCGGC 58.838 50.000 0.00 0.00 0.00 5.54
2144 2778 0.675522 TCACTTTCGGGATTTCGGCC 60.676 55.000 0.00 0.00 0.00 6.13
2145 2779 1.743995 ACTTTCGGGATTTCGGCCG 60.744 57.895 22.12 22.12 0.00 6.13
2146 2780 3.108357 CTTTCGGGATTTCGGCCGC 62.108 63.158 23.51 6.01 0.00 6.53
2159 2793 3.825611 GCCGCCGCATGGTCATTT 61.826 61.111 0.00 0.00 37.67 2.32
2160 2794 2.102749 CCGCCGCATGGTCATTTG 59.897 61.111 0.00 0.00 37.67 2.32
2161 2795 2.699768 CCGCCGCATGGTCATTTGT 61.700 57.895 0.00 0.00 37.67 2.83
2162 2796 1.212490 CGCCGCATGGTCATTTGTT 59.788 52.632 0.00 0.00 37.67 2.83
2163 2797 0.388391 CGCCGCATGGTCATTTGTTT 60.388 50.000 0.00 0.00 37.67 2.83
2164 2798 1.349234 GCCGCATGGTCATTTGTTTC 58.651 50.000 0.00 0.00 37.67 2.78
2165 2799 1.336702 GCCGCATGGTCATTTGTTTCA 60.337 47.619 0.00 0.00 37.67 2.69
2166 2800 2.674747 GCCGCATGGTCATTTGTTTCAT 60.675 45.455 0.00 0.00 37.67 2.57
2167 2801 3.428725 GCCGCATGGTCATTTGTTTCATA 60.429 43.478 0.00 0.00 37.67 2.15
2168 2802 4.737352 GCCGCATGGTCATTTGTTTCATAT 60.737 41.667 0.00 0.00 37.67 1.78
2169 2803 4.741185 CCGCATGGTCATTTGTTTCATATG 59.259 41.667 0.00 0.00 0.00 1.78
2170 2804 5.342433 CGCATGGTCATTTGTTTCATATGT 58.658 37.500 1.90 0.00 0.00 2.29
2171 2805 5.806502 CGCATGGTCATTTGTTTCATATGTT 59.193 36.000 1.90 0.00 0.00 2.71
2172 2806 6.237622 CGCATGGTCATTTGTTTCATATGTTG 60.238 38.462 1.90 0.00 0.00 3.33
2173 2807 6.591062 GCATGGTCATTTGTTTCATATGTTGT 59.409 34.615 1.90 0.00 0.00 3.32
2174 2808 7.201461 GCATGGTCATTTGTTTCATATGTTGTC 60.201 37.037 1.90 0.00 0.00 3.18
2175 2809 6.686630 TGGTCATTTGTTTCATATGTTGTCC 58.313 36.000 1.90 0.13 0.00 4.02
2176 2810 6.266330 TGGTCATTTGTTTCATATGTTGTCCA 59.734 34.615 1.90 2.33 0.00 4.02
2177 2811 7.039152 TGGTCATTTGTTTCATATGTTGTCCAT 60.039 33.333 1.90 0.00 37.58 3.41
2178 2812 7.276218 GGTCATTTGTTTCATATGTTGTCCATG 59.724 37.037 1.90 1.27 34.86 3.66
2179 2813 7.814107 GTCATTTGTTTCATATGTTGTCCATGT 59.186 33.333 1.90 0.00 34.86 3.21
2180 2814 8.366401 TCATTTGTTTCATATGTTGTCCATGTT 58.634 29.630 1.90 0.00 34.86 2.71
2181 2815 7.943413 TTTGTTTCATATGTTGTCCATGTTG 57.057 32.000 1.90 0.00 34.86 3.33
2182 2816 6.890979 TGTTTCATATGTTGTCCATGTTGA 57.109 33.333 1.90 0.00 34.86 3.18
2183 2817 6.676950 TGTTTCATATGTTGTCCATGTTGAC 58.323 36.000 1.90 0.00 34.86 3.18
2184 2818 6.264067 TGTTTCATATGTTGTCCATGTTGACA 59.736 34.615 1.90 1.13 43.26 3.58
2185 2819 5.878332 TCATATGTTGTCCATGTTGACAC 57.122 39.130 1.90 2.39 44.55 3.67
2186 2820 5.559770 TCATATGTTGTCCATGTTGACACT 58.440 37.500 1.90 0.00 44.55 3.55
2187 2821 5.643348 TCATATGTTGTCCATGTTGACACTC 59.357 40.000 1.90 3.05 44.55 3.51
2188 2822 3.558931 TGTTGTCCATGTTGACACTCT 57.441 42.857 4.49 0.00 44.55 3.24
2189 2823 3.884895 TGTTGTCCATGTTGACACTCTT 58.115 40.909 4.49 0.00 44.55 2.85
2190 2824 3.627123 TGTTGTCCATGTTGACACTCTTG 59.373 43.478 4.49 0.00 44.55 3.02
2191 2825 3.558931 TGTCCATGTTGACACTCTTGT 57.441 42.857 1.13 0.00 40.22 3.16
2192 2826 3.627123 TTGTCCATGTTGACACTCTTGTG 59.373 43.478 4.49 0.00 44.55 3.33
2207 2841 4.027755 GTGGTCACACACAGGTCG 57.972 61.111 0.00 0.00 46.90 4.79
2208 2842 1.440060 GTGGTCACACACAGGTCGA 59.560 57.895 0.00 0.00 46.90 4.20
2209 2843 0.179094 GTGGTCACACACAGGTCGAA 60.179 55.000 0.00 0.00 46.90 3.71
2210 2844 0.537653 TGGTCACACACAGGTCGAAA 59.462 50.000 0.00 0.00 0.00 3.46
2211 2845 0.935196 GGTCACACACAGGTCGAAAC 59.065 55.000 0.00 0.00 0.00 2.78
2212 2846 1.472728 GGTCACACACAGGTCGAAACT 60.473 52.381 0.00 0.00 0.00 2.66
2213 2847 1.859080 GTCACACACAGGTCGAAACTC 59.141 52.381 0.00 0.00 0.00 3.01
2214 2848 1.754803 TCACACACAGGTCGAAACTCT 59.245 47.619 0.00 0.00 0.00 3.24
2215 2849 2.167693 TCACACACAGGTCGAAACTCTT 59.832 45.455 0.00 0.00 0.00 2.85
2216 2850 2.936498 CACACACAGGTCGAAACTCTTT 59.064 45.455 0.00 0.00 0.00 2.52
2217 2851 3.374058 CACACACAGGTCGAAACTCTTTT 59.626 43.478 0.00 0.00 0.00 2.27
2218 2852 4.569162 CACACACAGGTCGAAACTCTTTTA 59.431 41.667 0.00 0.00 0.00 1.52
2219 2853 5.236478 CACACACAGGTCGAAACTCTTTTAT 59.764 40.000 0.00 0.00 0.00 1.40
2220 2854 5.820947 ACACACAGGTCGAAACTCTTTTATT 59.179 36.000 0.00 0.00 0.00 1.40
2221 2855 6.987992 ACACACAGGTCGAAACTCTTTTATTA 59.012 34.615 0.00 0.00 0.00 0.98
2222 2856 7.496591 ACACACAGGTCGAAACTCTTTTATTAA 59.503 33.333 0.00 0.00 0.00 1.40
2223 2857 8.339714 CACACAGGTCGAAACTCTTTTATTAAA 58.660 33.333 0.00 0.00 0.00 1.52
2224 2858 9.063615 ACACAGGTCGAAACTCTTTTATTAAAT 57.936 29.630 0.00 0.00 0.00 1.40
2645 3279 5.690464 ATACTTCCTGACATCTCAAAGCT 57.310 39.130 0.00 0.00 0.00 3.74
2646 3280 6.798427 ATACTTCCTGACATCTCAAAGCTA 57.202 37.500 0.00 0.00 0.00 3.32
2647 3281 5.083533 ACTTCCTGACATCTCAAAGCTAG 57.916 43.478 0.00 0.00 0.00 3.42
2648 3282 3.533606 TCCTGACATCTCAAAGCTAGC 57.466 47.619 6.62 6.62 0.00 3.42
2649 3283 2.833943 TCCTGACATCTCAAAGCTAGCA 59.166 45.455 18.83 0.00 0.00 3.49
2650 3284 3.453717 TCCTGACATCTCAAAGCTAGCAT 59.546 43.478 18.83 0.65 0.00 3.79
2651 3285 4.651045 TCCTGACATCTCAAAGCTAGCATA 59.349 41.667 18.83 0.00 0.00 3.14
2652 3286 5.306419 TCCTGACATCTCAAAGCTAGCATAT 59.694 40.000 18.83 0.00 0.00 1.78
2653 3287 5.996513 CCTGACATCTCAAAGCTAGCATATT 59.003 40.000 18.83 6.04 0.00 1.28
2654 3288 6.485984 CCTGACATCTCAAAGCTAGCATATTT 59.514 38.462 18.83 6.03 0.00 1.40
2692 3326 7.896383 TCCCCATAACTGGAAATTGAATTAG 57.104 36.000 0.00 0.00 46.37 1.73
2693 3327 7.647827 TCCCCATAACTGGAAATTGAATTAGA 58.352 34.615 0.00 0.00 46.37 2.10
2694 3328 8.119246 TCCCCATAACTGGAAATTGAATTAGAA 58.881 33.333 0.00 0.00 46.37 2.10
2749 3402 5.220854 GCTTAATGTCTTGTTGTGACAGTGT 60.221 40.000 0.00 0.00 45.88 3.55
2857 3510 9.537852 TTACATTAGTTTACAGAGGGAGTAGAA 57.462 33.333 0.00 0.00 0.00 2.10
2858 3511 7.838884 ACATTAGTTTACAGAGGGAGTAGAAC 58.161 38.462 0.00 0.00 0.00 3.01
2859 3512 7.674772 ACATTAGTTTACAGAGGGAGTAGAACT 59.325 37.037 0.00 0.00 32.70 3.01
2860 3513 5.986501 AGTTTACAGAGGGAGTAGAACTG 57.013 43.478 0.00 0.00 35.14 3.16
2861 3514 5.642165 AGTTTACAGAGGGAGTAGAACTGA 58.358 41.667 0.00 0.00 33.53 3.41
2862 3515 6.075984 AGTTTACAGAGGGAGTAGAACTGAA 58.924 40.000 0.00 0.00 33.53 3.02
2863 3516 6.726764 AGTTTACAGAGGGAGTAGAACTGAAT 59.273 38.462 0.00 0.00 33.53 2.57
2864 3517 7.894364 AGTTTACAGAGGGAGTAGAACTGAATA 59.106 37.037 0.00 0.00 33.53 1.75
2865 3518 8.697292 GTTTACAGAGGGAGTAGAACTGAATAT 58.303 37.037 0.00 0.00 33.53 1.28
2866 3519 9.931698 TTTACAGAGGGAGTAGAACTGAATATA 57.068 33.333 0.00 0.00 33.53 0.86
2867 3520 9.575868 TTACAGAGGGAGTAGAACTGAATATAG 57.424 37.037 0.00 0.00 33.53 1.31
2868 3521 7.588169 ACAGAGGGAGTAGAACTGAATATAGT 58.412 38.462 0.00 0.00 33.53 2.12
2869 3522 8.062536 ACAGAGGGAGTAGAACTGAATATAGTT 58.937 37.037 0.00 0.00 43.24 2.24
2870 3523 8.356657 CAGAGGGAGTAGAACTGAATATAGTTG 58.643 40.741 0.00 0.00 40.78 3.16
2871 3524 8.062536 AGAGGGAGTAGAACTGAATATAGTTGT 58.937 37.037 0.00 0.00 40.78 3.32
2872 3525 9.352191 GAGGGAGTAGAACTGAATATAGTTGTA 57.648 37.037 0.00 0.00 40.78 2.41
2924 3588 4.363138 TGTACTGATTTGCGCTAGAGATG 58.637 43.478 9.73 0.00 0.00 2.90
2945 3609 2.549754 GTCAATGGCGATATCTTGTGGG 59.450 50.000 0.34 0.00 0.00 4.61
2970 3634 3.146066 TGTGGGCTTGTGACAGAATAAC 58.854 45.455 0.00 0.00 0.00 1.89
3026 3692 3.689161 GCTTTTCTGGTGGTTTGCTTTTT 59.311 39.130 0.00 0.00 0.00 1.94
3076 3750 2.905880 AGGACCGGGATAGCGACG 60.906 66.667 6.32 0.00 0.00 5.12
3118 3792 1.168714 GTGGGAAAGTGATGGTGAGC 58.831 55.000 0.00 0.00 0.00 4.26
3260 3969 6.215121 TGTTTGTGCAAATGTCTAAAGGATG 58.785 36.000 0.46 0.00 32.36 3.51
3267 3976 6.602803 TGCAAATGTCTAAAGGATGCTAATGA 59.397 34.615 0.00 0.00 33.66 2.57
3364 4073 3.133003 TCGTGAAGGGAATGAAGGAGATC 59.867 47.826 0.00 0.00 0.00 2.75
3370 4079 3.643792 AGGGAATGAAGGAGATCGGTAAG 59.356 47.826 0.00 0.00 0.00 2.34
3445 4163 3.535280 TTCAACCTGGGCTTTTGTTTC 57.465 42.857 0.00 0.00 0.00 2.78
3450 4168 0.033920 CTGGGCTTTTGTTTCCAGGC 59.966 55.000 0.00 0.00 42.12 4.85
3460 4178 1.230324 GTTTCCAGGCCATAGCGATC 58.770 55.000 5.01 0.00 41.24 3.69
3587 4308 8.549338 TGTTATACGATTGGTAATGTGAAACA 57.451 30.769 0.00 0.00 42.06 2.83
3680 4413 8.665643 AAGAAGAAGATGATGATGATCTTGAC 57.334 34.615 11.82 0.00 39.72 3.18
3687 4420 6.483974 AGATGATGATGATCTTGACTTTGAGC 59.516 38.462 0.00 0.00 0.00 4.26
3892 4751 2.937799 TCCTTGTGTTTCAACGGTGTAC 59.062 45.455 0.00 0.49 32.18 2.90
3922 4783 4.355543 TGTGAAGTTTGAGCACTTTGTC 57.644 40.909 0.00 0.00 37.11 3.18
4013 4878 2.761786 TTATACCAGTACCTCCCGCT 57.238 50.000 0.00 0.00 0.00 5.52
4086 4951 7.599998 GTCCTGCTTGTTTGTGATTTTTATGAT 59.400 33.333 0.00 0.00 0.00 2.45
4119 4984 3.665745 TTTACGTTAGACACCACTCCC 57.334 47.619 0.00 0.00 0.00 4.30
4186 5051 2.134789 ACTTGTGGAATCAGGATGGC 57.865 50.000 0.00 0.00 36.16 4.40
4293 5187 8.404000 ACTTTGTAGTCCAAGATATAGTGTACG 58.596 37.037 0.00 0.00 33.75 3.67
4453 5382 3.408634 TGGAAACTAGCTTGCTGGTTAC 58.591 45.455 21.26 17.50 0.00 2.50
4466 5395 4.751060 TGCTGGTTACGACGAATAAGATT 58.249 39.130 0.00 0.00 0.00 2.40
4474 5403 8.529911 GGTTACGACGAATAAGATTTACAAGAG 58.470 37.037 0.00 0.00 0.00 2.85
4682 5646 7.836842 TGCTAGAAATACATACACAGAGTCAA 58.163 34.615 0.00 0.00 0.00 3.18
4763 7216 6.422776 ACGCAAATAAAACTAGTGATGAGG 57.577 37.500 0.00 0.00 0.00 3.86
4836 7311 7.281549 TGAAAACAACAAGTAGGGAAAGAGTAC 59.718 37.037 0.00 0.00 0.00 2.73
4922 7405 3.719268 ACCTGAATAGTGTGGAATGCA 57.281 42.857 0.00 0.00 0.00 3.96
4939 7422 8.623903 GTGGAATGCAAATATCTTCATGTTCTA 58.376 33.333 0.00 0.00 0.00 2.10
4969 7452 4.685169 ACACACATTTGCCTTATCTTCG 57.315 40.909 0.00 0.00 0.00 3.79
5088 7617 5.368230 TCCAGCACCACCAATACTTCATATA 59.632 40.000 0.00 0.00 0.00 0.86
5190 7722 1.197721 CGTCATTCTCAAACAGCACCC 59.802 52.381 0.00 0.00 0.00 4.61
5359 8015 6.864685 TGTTGGTACGTAGTTGTATTTCTCTG 59.135 38.462 0.00 0.00 37.78 3.35
5588 8248 2.665537 GTCTCGACAGTCATGCTTTCAG 59.334 50.000 0.41 0.00 0.00 3.02
5647 8309 1.951209 TCCTAGGTGTGGATGCTGAA 58.049 50.000 9.08 0.00 0.00 3.02
5737 8399 3.175133 CCATCAGGTACCTTGTGCC 57.825 57.895 13.15 0.00 38.59 5.01
5934 8619 1.098050 CCTTTGCTGGTAGCCATGAC 58.902 55.000 0.00 0.00 41.51 3.06
6508 9208 0.393077 CACAAGGGGAGTCGTCAAGT 59.607 55.000 0.00 0.00 0.00 3.16
6817 9520 6.417191 TTGCATCGTTAGTTGGTAGATTTC 57.583 37.500 0.00 0.00 0.00 2.17
6820 9523 5.276254 GCATCGTTAGTTGGTAGATTTCGTC 60.276 44.000 0.00 0.00 0.00 4.20
6924 9627 3.455910 AGTCAGCTATGGCAAGGATGTAA 59.544 43.478 3.10 0.00 41.70 2.41
6927 9630 2.173356 AGCTATGGCAAGGATGTAAGCA 59.827 45.455 3.10 0.00 41.70 3.91
6948 9651 6.234177 AGCAAAGCATCATAGTACCTATTCC 58.766 40.000 0.00 0.00 0.00 3.01
7418 10135 5.654209 AGAGGAAGTTGATTATGAAAAGCCC 59.346 40.000 0.00 0.00 0.00 5.19
7434 10151 7.591821 TGAAAAGCCCATATAGGAAGGTAAAT 58.408 34.615 0.00 0.00 41.22 1.40
7435 10152 7.505585 TGAAAAGCCCATATAGGAAGGTAAATG 59.494 37.037 0.00 0.00 41.22 2.32
7438 10155 5.610982 AGCCCATATAGGAAGGTAAATGTGA 59.389 40.000 0.00 0.00 41.22 3.58
7439 10156 5.705905 GCCCATATAGGAAGGTAAATGTGAC 59.294 44.000 0.00 0.00 41.22 3.67
7440 10157 6.238648 CCCATATAGGAAGGTAAATGTGACC 58.761 44.000 0.00 0.00 41.22 4.02
7441 10158 6.044404 CCCATATAGGAAGGTAAATGTGACCT 59.956 42.308 0.00 0.00 41.19 3.85
7442 10159 7.959940 CCCATATAGGAAGGTAAATGTGACCTG 60.960 44.444 0.00 0.00 42.54 4.00
7462 10179 5.221722 ACCTGATCTTCTTCTGCTGTTAACA 60.222 40.000 8.28 8.28 0.00 2.41
7584 10301 4.518249 TGACTGGTACATTCACACAAACA 58.482 39.130 0.00 0.00 43.06 2.83
7613 10330 5.250313 ACATCTTCTATTCTGGGATGGGATC 59.750 44.000 0.00 0.00 38.33 3.36
7634 10351 7.364144 GGGATCCAAAAGAAGCTGATACAAATT 60.364 37.037 15.23 0.00 0.00 1.82
7693 10410 0.863144 TTCGTTTCGCACACTAAGCC 59.137 50.000 0.00 0.00 0.00 4.35
7718 10435 4.217550 GCCAAGCTGAAACAAGTACCAATA 59.782 41.667 0.00 0.00 0.00 1.90
7720 10437 6.572314 GCCAAGCTGAAACAAGTACCAATATT 60.572 38.462 0.00 0.00 0.00 1.28
7722 10439 7.370383 CAAGCTGAAACAAGTACCAATATTGT 58.630 34.615 14.25 5.42 38.76 2.71
7756 10474 4.202284 ACTTGAAATGCATTCTTTGGCACT 60.202 37.500 13.38 0.00 43.75 4.40
7757 10475 3.655486 TGAAATGCATTCTTTGGCACTG 58.345 40.909 13.38 0.00 43.75 3.66
7793 10511 8.868522 TCATTCTTTGGTAGTGATGAAAAGAT 57.131 30.769 0.00 0.00 36.89 2.40
7797 10515 7.874940 TCTTTGGTAGTGATGAAAAGATTGTG 58.125 34.615 0.00 0.00 33.21 3.33
7798 10516 5.627499 TGGTAGTGATGAAAAGATTGTGC 57.373 39.130 0.00 0.00 0.00 4.57
7828 10547 2.093306 TTTCACTCAGGGCATACGTG 57.907 50.000 0.00 0.00 36.32 4.49
7846 10565 8.491950 GCATACGTGTTTTTGGAAAAATACATT 58.508 29.630 18.63 10.71 44.88 2.71
8006 10726 5.425539 TGTTATAAGACTTTAGAGCCTGCCT 59.574 40.000 0.00 0.00 0.00 4.75
8008 10728 7.125204 TGTTATAAGACTTTAGAGCCTGCCTAA 59.875 37.037 0.00 0.00 0.00 2.69
8009 10729 3.897141 AGACTTTAGAGCCTGCCTAAC 57.103 47.619 0.00 0.00 0.00 2.34
8044 10771 8.986847 CAAGGATAATATAGTGCTTCTTCTGTG 58.013 37.037 0.00 0.00 0.00 3.66
8063 10790 6.871844 TCTGTGCTAGCATGGATAGATATTC 58.128 40.000 22.51 3.33 0.00 1.75
8083 10810 0.679960 GGGAGCCGGTGTAAATGCTT 60.680 55.000 1.90 0.00 33.41 3.91
8124 10851 2.771089 TGTTGGAGCTCTGTGTTCATC 58.229 47.619 14.64 1.90 0.00 2.92
8125 10852 2.104622 TGTTGGAGCTCTGTGTTCATCA 59.895 45.455 14.64 4.53 0.00 3.07
8126 10853 3.244665 TGTTGGAGCTCTGTGTTCATCAT 60.245 43.478 14.64 0.00 0.00 2.45
8147 10874 6.210796 TCATCAAGATTGAAAACAACAGCAG 58.789 36.000 0.00 0.00 41.13 4.24
8206 10935 4.141711 TGGCTTCACTTCTGTGTAACTTCT 60.142 41.667 0.00 0.00 44.14 2.85
8274 11003 1.349357 ACTCTCTTGGGGCTCTGAAAC 59.651 52.381 0.00 0.00 0.00 2.78
8279 11008 3.454082 CTCTTGGGGCTCTGAAACTAGAT 59.546 47.826 0.00 0.00 0.00 1.98
8316 11092 1.911057 CTTCAAAACCTGGGGTCTCC 58.089 55.000 0.00 0.00 33.12 3.71
8331 11110 2.239907 GGTCTCCTGGTTGCCTTTATCT 59.760 50.000 0.00 0.00 0.00 1.98
8340 11119 3.375299 GGTTGCCTTTATCTACTGCACTG 59.625 47.826 0.00 0.00 0.00 3.66
8395 11174 5.640732 TGAAACTGAAGCTGAAACTGAAAC 58.359 37.500 0.00 0.00 0.00 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 1.540435 TACTCATGTGGGTGCTCGCA 61.540 55.000 0.87 0.87 0.00 5.10
158 161 9.238368 TCAAGTTCGATACCCAAAATTTTAGAT 57.762 29.630 2.44 0.00 0.00 1.98
176 179 4.355437 AGTAGAATGATCGCTCAAGTTCG 58.645 43.478 0.00 0.00 34.37 3.95
185 188 7.881643 ATTCATACTTGAGTAGAATGATCGC 57.118 36.000 11.55 0.00 32.49 4.58
209 212 6.164876 CCATGGTGTCAATGCTTCATTAAAA 58.835 36.000 2.57 0.00 32.35 1.52
299 302 8.825745 TCTAGGCAAAAATGACAAAAATCAAAC 58.174 29.630 0.00 0.00 30.82 2.93
344 347 3.117794 TCGCGTATAATGTTTTCCGAGG 58.882 45.455 5.77 0.00 0.00 4.63
355 360 2.991434 AGTCGATGCTCGCGTATAAT 57.009 45.000 5.77 0.00 40.21 1.28
450 455 3.063997 GCAGAGTTGGTGAATATTGTCCG 59.936 47.826 0.00 0.00 0.00 4.79
646 664 2.123208 TGGTGGAGGTGTCGGTGA 60.123 61.111 0.00 0.00 0.00 4.02
655 673 1.512926 CGTGAGAAAAGTGGTGGAGG 58.487 55.000 0.00 0.00 0.00 4.30
658 677 0.535102 AGGCGTGAGAAAAGTGGTGG 60.535 55.000 0.00 0.00 0.00 4.61
663 682 0.321996 GAGGGAGGCGTGAGAAAAGT 59.678 55.000 0.00 0.00 0.00 2.66
679 698 4.096081 GCACATCTCAATGAGGAAAAGAGG 59.904 45.833 10.71 0.00 36.67 3.69
713 749 0.542232 AGGACCCGCTACACAGTTCT 60.542 55.000 0.00 0.00 0.00 3.01
747 783 5.164177 CGAGACTTTTATGTGTTCTGTCGAC 60.164 44.000 9.11 9.11 0.00 4.20
775 811 0.692756 TAGTTCGGGGCCATGGATGA 60.693 55.000 18.40 3.55 0.00 2.92
1165 1478 1.001378 ACGAATGCTGTGCAAAGGAAC 60.001 47.619 0.73 0.00 43.62 3.62
1233 1546 6.820656 ACTTTGTATGATTGAGCAGTAGGAAG 59.179 38.462 0.00 0.00 0.00 3.46
1235 1548 6.299805 ACTTTGTATGATTGAGCAGTAGGA 57.700 37.500 0.00 0.00 0.00 2.94
1284 1597 8.404889 TGATGCGTCAAAAATAATAAACATGG 57.595 30.769 6.04 0.00 0.00 3.66
1305 1618 1.445066 AGTCGCGCACAGACTGATG 60.445 57.895 14.51 5.13 46.12 3.07
1493 2030 3.077359 GCAACATATAGATGCCTGGTCC 58.923 50.000 0.00 0.00 39.87 4.46
1505 2042 5.890985 AGCTAACCAACCAATGCAACATATA 59.109 36.000 0.00 0.00 0.00 0.86
1506 2043 4.711355 AGCTAACCAACCAATGCAACATAT 59.289 37.500 0.00 0.00 0.00 1.78
1552 2089 7.629157 TGATACCTGACCAATGTGAGAAAATA 58.371 34.615 0.00 0.00 0.00 1.40
1606 2143 3.587797 TGAGCCGGTACTTTGACTAAG 57.412 47.619 1.90 0.00 39.87 2.18
1675 2212 5.871524 CGTATATCAGATCAAATGGACCCTG 59.128 44.000 0.00 0.00 33.31 4.45
1714 2251 5.010314 AGTGCTCAGAATGCATCAAAGAAAA 59.990 36.000 0.00 0.00 42.69 2.29
1733 2270 4.564041 CAGTGTCATTCAACTCTAGTGCT 58.436 43.478 0.00 0.00 0.00 4.40
1758 2295 3.730963 GCCGAAATCCCGAAAGTGAAATC 60.731 47.826 0.00 0.00 0.00 2.17
1759 2296 2.163613 GCCGAAATCCCGAAAGTGAAAT 59.836 45.455 0.00 0.00 0.00 2.17
1760 2297 1.538075 GCCGAAATCCCGAAAGTGAAA 59.462 47.619 0.00 0.00 0.00 2.69
1761 2298 1.161843 GCCGAAATCCCGAAAGTGAA 58.838 50.000 0.00 0.00 0.00 3.18
1762 2299 0.323629 AGCCGAAATCCCGAAAGTGA 59.676 50.000 0.00 0.00 0.00 3.41
1763 2300 0.447801 CAGCCGAAATCCCGAAAGTG 59.552 55.000 0.00 0.00 0.00 3.16
1764 2301 1.305930 GCAGCCGAAATCCCGAAAGT 61.306 55.000 0.00 0.00 0.00 2.66
1765 2302 1.429423 GCAGCCGAAATCCCGAAAG 59.571 57.895 0.00 0.00 0.00 2.62
1766 2303 2.043980 GGCAGCCGAAATCCCGAAA 61.044 57.895 0.00 0.00 0.00 3.46
1767 2304 2.437716 GGCAGCCGAAATCCCGAA 60.438 61.111 0.00 0.00 0.00 4.30
1845 2395 3.138304 GACCTGTTAATGCTGTGTGTGA 58.862 45.455 0.00 0.00 0.00 3.58
1846 2396 2.096268 CGACCTGTTAATGCTGTGTGTG 60.096 50.000 0.00 0.00 0.00 3.82
1847 2397 2.143122 CGACCTGTTAATGCTGTGTGT 58.857 47.619 0.00 0.00 0.00 3.72
1848 2398 2.412870 TCGACCTGTTAATGCTGTGTG 58.587 47.619 0.00 0.00 0.00 3.82
1849 2399 2.831685 TCGACCTGTTAATGCTGTGT 57.168 45.000 0.00 0.00 0.00 3.72
1850 2400 3.498397 AGTTTCGACCTGTTAATGCTGTG 59.502 43.478 0.00 0.00 0.00 3.66
1937 2571 3.701040 AGTTTGCAGTCCAAATGAACAGT 59.299 39.130 0.00 0.00 44.61 3.55
2065 2699 8.442632 TGCATCAAAGAAAGATTATCACCTAG 57.557 34.615 0.00 0.00 0.00 3.02
2066 2700 8.985315 ATGCATCAAAGAAAGATTATCACCTA 57.015 30.769 0.00 0.00 0.00 3.08
2067 2701 7.893124 ATGCATCAAAGAAAGATTATCACCT 57.107 32.000 0.00 0.00 0.00 4.00
2068 2702 8.411683 AGAATGCATCAAAGAAAGATTATCACC 58.588 33.333 0.00 0.00 0.00 4.02
2069 2703 9.234384 CAGAATGCATCAAAGAAAGATTATCAC 57.766 33.333 0.00 0.00 0.00 3.06
2071 2705 9.666626 CTCAGAATGCATCAAAGAAAGATTATC 57.333 33.333 0.00 0.00 34.76 1.75
2073 2707 7.121611 TGCTCAGAATGCATCAAAGAAAGATTA 59.878 33.333 0.00 0.00 35.31 1.75
2074 2708 6.071560 TGCTCAGAATGCATCAAAGAAAGATT 60.072 34.615 0.00 0.00 35.31 2.40
2075 2709 5.417894 TGCTCAGAATGCATCAAAGAAAGAT 59.582 36.000 0.00 0.00 35.31 2.40
2076 2710 4.763279 TGCTCAGAATGCATCAAAGAAAGA 59.237 37.500 0.00 0.00 35.31 2.52
2077 2711 4.857588 GTGCTCAGAATGCATCAAAGAAAG 59.142 41.667 0.00 0.00 42.69 2.62
2078 2712 4.521639 AGTGCTCAGAATGCATCAAAGAAA 59.478 37.500 0.00 0.00 42.69 2.52
2079 2713 4.077108 AGTGCTCAGAATGCATCAAAGAA 58.923 39.130 0.00 0.00 42.69 2.52
2080 2714 3.682696 AGTGCTCAGAATGCATCAAAGA 58.317 40.909 0.00 0.00 42.69 2.52
2081 2715 4.874396 TCTAGTGCTCAGAATGCATCAAAG 59.126 41.667 0.00 0.00 42.69 2.77
2082 2716 4.835678 TCTAGTGCTCAGAATGCATCAAA 58.164 39.130 0.00 0.00 42.69 2.69
2083 2717 4.081254 ACTCTAGTGCTCAGAATGCATCAA 60.081 41.667 0.00 0.00 42.69 2.57
2084 2718 3.450096 ACTCTAGTGCTCAGAATGCATCA 59.550 43.478 0.00 0.00 42.69 3.07
2085 2719 4.057406 ACTCTAGTGCTCAGAATGCATC 57.943 45.455 0.00 0.00 42.69 3.91
2086 2720 4.081254 TCAACTCTAGTGCTCAGAATGCAT 60.081 41.667 0.00 0.00 42.69 3.96
2087 2721 3.259123 TCAACTCTAGTGCTCAGAATGCA 59.741 43.478 0.00 0.00 38.19 3.96
2088 2722 3.854666 TCAACTCTAGTGCTCAGAATGC 58.145 45.455 0.00 0.00 34.76 3.56
2089 2723 6.035866 GTCATTCAACTCTAGTGCTCAGAATG 59.964 42.308 15.52 15.52 41.27 2.67
2090 2724 6.105333 GTCATTCAACTCTAGTGCTCAGAAT 58.895 40.000 0.00 0.00 0.00 2.40
2091 2725 5.011023 TGTCATTCAACTCTAGTGCTCAGAA 59.989 40.000 0.00 0.00 0.00 3.02
2092 2726 4.524328 TGTCATTCAACTCTAGTGCTCAGA 59.476 41.667 0.00 0.00 0.00 3.27
2093 2727 4.624882 GTGTCATTCAACTCTAGTGCTCAG 59.375 45.833 0.00 0.00 0.00 3.35
2094 2728 4.281941 AGTGTCATTCAACTCTAGTGCTCA 59.718 41.667 0.00 0.00 0.00 4.26
2095 2729 4.624882 CAGTGTCATTCAACTCTAGTGCTC 59.375 45.833 0.00 0.00 0.00 4.26
2096 2730 4.564041 CAGTGTCATTCAACTCTAGTGCT 58.436 43.478 0.00 0.00 0.00 4.40
2097 2731 3.124297 GCAGTGTCATTCAACTCTAGTGC 59.876 47.826 0.00 0.00 0.00 4.40
2098 2732 4.388165 CAGCAGTGTCATTCAACTCTAGTG 59.612 45.833 0.00 0.00 0.00 2.74
2099 2733 4.281941 TCAGCAGTGTCATTCAACTCTAGT 59.718 41.667 0.00 0.00 0.00 2.57
2100 2734 4.814147 TCAGCAGTGTCATTCAACTCTAG 58.186 43.478 0.00 0.00 0.00 2.43
2101 2735 4.871933 TCAGCAGTGTCATTCAACTCTA 57.128 40.909 0.00 0.00 0.00 2.43
2102 2736 3.758755 TCAGCAGTGTCATTCAACTCT 57.241 42.857 0.00 0.00 0.00 3.24
2103 2737 5.049198 TGAAATCAGCAGTGTCATTCAACTC 60.049 40.000 0.00 0.00 0.00 3.01
2104 2738 4.823442 TGAAATCAGCAGTGTCATTCAACT 59.177 37.500 0.00 0.00 0.00 3.16
2105 2739 4.913924 GTGAAATCAGCAGTGTCATTCAAC 59.086 41.667 0.00 0.00 0.00 3.18
2106 2740 4.823442 AGTGAAATCAGCAGTGTCATTCAA 59.177 37.500 0.00 0.00 0.00 2.69
2107 2741 4.392047 AGTGAAATCAGCAGTGTCATTCA 58.608 39.130 0.00 0.00 0.00 2.57
2108 2742 5.368256 AAGTGAAATCAGCAGTGTCATTC 57.632 39.130 0.00 0.00 0.00 2.67
2109 2743 5.561532 CGAAAGTGAAATCAGCAGTGTCATT 60.562 40.000 0.00 0.00 0.00 2.57
2110 2744 4.083643 CGAAAGTGAAATCAGCAGTGTCAT 60.084 41.667 0.00 0.00 0.00 3.06
2111 2745 3.248363 CGAAAGTGAAATCAGCAGTGTCA 59.752 43.478 0.00 0.00 0.00 3.58
2112 2746 3.364366 CCGAAAGTGAAATCAGCAGTGTC 60.364 47.826 0.00 0.00 0.00 3.67
2113 2747 2.549754 CCGAAAGTGAAATCAGCAGTGT 59.450 45.455 0.00 0.00 0.00 3.55
2114 2748 2.095567 CCCGAAAGTGAAATCAGCAGTG 60.096 50.000 0.00 0.00 0.00 3.66
2115 2749 2.154462 CCCGAAAGTGAAATCAGCAGT 58.846 47.619 0.00 0.00 0.00 4.40
2116 2750 2.426522 TCCCGAAAGTGAAATCAGCAG 58.573 47.619 0.00 0.00 0.00 4.24
2117 2751 2.559698 TCCCGAAAGTGAAATCAGCA 57.440 45.000 0.00 0.00 0.00 4.41
2118 2752 4.415735 GAAATCCCGAAAGTGAAATCAGC 58.584 43.478 0.00 0.00 0.00 4.26
2119 2753 4.437390 CCGAAATCCCGAAAGTGAAATCAG 60.437 45.833 0.00 0.00 0.00 2.90
2120 2754 3.438781 CCGAAATCCCGAAAGTGAAATCA 59.561 43.478 0.00 0.00 0.00 2.57
2121 2755 3.730963 GCCGAAATCCCGAAAGTGAAATC 60.731 47.826 0.00 0.00 0.00 2.17
2122 2756 2.163613 GCCGAAATCCCGAAAGTGAAAT 59.836 45.455 0.00 0.00 0.00 2.17
2123 2757 1.538075 GCCGAAATCCCGAAAGTGAAA 59.462 47.619 0.00 0.00 0.00 2.69
2124 2758 1.161843 GCCGAAATCCCGAAAGTGAA 58.838 50.000 0.00 0.00 0.00 3.18
2125 2759 0.675522 GGCCGAAATCCCGAAAGTGA 60.676 55.000 0.00 0.00 0.00 3.41
2126 2760 1.800681 GGCCGAAATCCCGAAAGTG 59.199 57.895 0.00 0.00 0.00 3.16
2127 2761 4.313819 GGCCGAAATCCCGAAAGT 57.686 55.556 0.00 0.00 0.00 2.66
2142 2776 3.825611 AAATGACCATGCGGCGGC 61.826 61.111 9.78 9.68 40.52 6.53
2143 2777 2.102749 CAAATGACCATGCGGCGG 59.897 61.111 9.78 0.00 34.57 6.13
2144 2778 0.388391 AAACAAATGACCATGCGGCG 60.388 50.000 0.51 0.51 34.57 6.46
2145 2779 1.336702 TGAAACAAATGACCATGCGGC 60.337 47.619 0.00 0.00 34.57 6.53
2146 2780 2.721274 TGAAACAAATGACCATGCGG 57.279 45.000 0.00 0.00 38.77 5.69
2147 2781 5.342433 ACATATGAAACAAATGACCATGCG 58.658 37.500 10.38 0.00 0.00 4.73
2148 2782 6.591062 ACAACATATGAAACAAATGACCATGC 59.409 34.615 10.38 0.00 0.00 4.06
2149 2783 7.276218 GGACAACATATGAAACAAATGACCATG 59.724 37.037 10.38 0.00 0.00 3.66
2150 2784 7.039152 TGGACAACATATGAAACAAATGACCAT 60.039 33.333 10.38 0.00 0.00 3.55
2151 2785 6.266330 TGGACAACATATGAAACAAATGACCA 59.734 34.615 10.38 8.98 0.00 4.02
2152 2786 6.686630 TGGACAACATATGAAACAAATGACC 58.313 36.000 10.38 6.85 0.00 4.02
2153 2787 7.814107 ACATGGACAACATATGAAACAAATGAC 59.186 33.333 10.38 0.00 37.84 3.06
2154 2788 7.894708 ACATGGACAACATATGAAACAAATGA 58.105 30.769 10.38 0.00 37.84 2.57
2155 2789 8.436970 CAACATGGACAACATATGAAACAAATG 58.563 33.333 10.38 8.75 37.84 2.32
2156 2790 8.366401 TCAACATGGACAACATATGAAACAAAT 58.634 29.630 10.38 0.00 37.84 2.32
2157 2791 7.651304 GTCAACATGGACAACATATGAAACAAA 59.349 33.333 10.38 0.00 37.84 2.83
2158 2792 7.144661 GTCAACATGGACAACATATGAAACAA 58.855 34.615 10.38 0.00 37.84 2.83
2159 2793 6.264067 TGTCAACATGGACAACATATGAAACA 59.736 34.615 10.38 1.55 44.34 2.83
2160 2794 6.676950 TGTCAACATGGACAACATATGAAAC 58.323 36.000 10.38 0.00 44.34 2.78
2161 2795 6.890979 TGTCAACATGGACAACATATGAAA 57.109 33.333 10.38 0.00 44.34 2.69
2171 2805 3.205338 CACAAGAGTGTCAACATGGACA 58.795 45.455 0.00 0.00 45.06 4.02
2172 2806 2.549754 CCACAAGAGTGTCAACATGGAC 59.450 50.000 0.00 0.00 44.39 4.02
2173 2807 2.172505 ACCACAAGAGTGTCAACATGGA 59.827 45.455 0.00 0.00 44.39 3.41
2174 2808 2.549754 GACCACAAGAGTGTCAACATGG 59.450 50.000 0.00 0.00 44.39 3.66
2175 2809 3.002656 GTGACCACAAGAGTGTCAACATG 59.997 47.826 0.00 0.00 44.39 3.21
2176 2810 3.206150 GTGACCACAAGAGTGTCAACAT 58.794 45.455 0.00 0.00 44.39 2.71
2177 2811 2.027653 TGTGACCACAAGAGTGTCAACA 60.028 45.455 0.00 0.00 44.39 3.33
2178 2812 2.351726 GTGTGACCACAAGAGTGTCAAC 59.648 50.000 4.21 0.00 44.39 3.18
2179 2813 2.627945 GTGTGACCACAAGAGTGTCAA 58.372 47.619 4.21 0.00 44.39 3.18
2180 2814 2.309528 GTGTGACCACAAGAGTGTCA 57.690 50.000 4.21 0.00 44.39 3.58
2190 2824 0.179094 TTCGACCTGTGTGTGACCAC 60.179 55.000 0.00 0.00 42.19 4.16
2191 2825 0.537653 TTTCGACCTGTGTGTGACCA 59.462 50.000 0.00 0.00 0.00 4.02
2192 2826 0.935196 GTTTCGACCTGTGTGTGACC 59.065 55.000 0.00 0.00 0.00 4.02
2193 2827 1.859080 GAGTTTCGACCTGTGTGTGAC 59.141 52.381 0.00 0.00 0.00 3.67
2194 2828 1.754803 AGAGTTTCGACCTGTGTGTGA 59.245 47.619 0.00 0.00 0.00 3.58
2195 2829 2.225068 AGAGTTTCGACCTGTGTGTG 57.775 50.000 0.00 0.00 0.00 3.82
2196 2830 2.981859 AAGAGTTTCGACCTGTGTGT 57.018 45.000 0.00 0.00 0.00 3.72
2197 2831 5.924475 ATAAAAGAGTTTCGACCTGTGTG 57.076 39.130 0.00 0.00 0.00 3.82
2198 2832 8.441312 TTTAATAAAAGAGTTTCGACCTGTGT 57.559 30.769 0.00 0.00 0.00 3.72
2622 3256 6.059787 AGCTTTGAGATGTCAGGAAGTATT 57.940 37.500 6.26 0.00 32.98 1.89
2623 3257 5.690464 AGCTTTGAGATGTCAGGAAGTAT 57.310 39.130 6.26 0.00 32.98 2.12
2624 3258 5.394663 GCTAGCTTTGAGATGTCAGGAAGTA 60.395 44.000 7.70 0.00 32.98 2.24
2625 3259 4.622695 GCTAGCTTTGAGATGTCAGGAAGT 60.623 45.833 7.70 0.00 32.98 3.01
2626 3260 3.870419 GCTAGCTTTGAGATGTCAGGAAG 59.130 47.826 7.70 0.94 32.98 3.46
2627 3261 3.261643 TGCTAGCTTTGAGATGTCAGGAA 59.738 43.478 17.23 0.00 32.98 3.36
2628 3262 2.833943 TGCTAGCTTTGAGATGTCAGGA 59.166 45.455 17.23 0.00 32.98 3.86
2629 3263 3.257469 TGCTAGCTTTGAGATGTCAGG 57.743 47.619 17.23 0.00 32.98 3.86
2630 3264 7.226128 TGAAATATGCTAGCTTTGAGATGTCAG 59.774 37.037 17.23 0.00 32.98 3.51
2631 3265 7.049754 TGAAATATGCTAGCTTTGAGATGTCA 58.950 34.615 17.23 6.24 0.00 3.58
2632 3266 7.226325 ACTGAAATATGCTAGCTTTGAGATGTC 59.774 37.037 17.23 3.58 0.00 3.06
2633 3267 7.052873 ACTGAAATATGCTAGCTTTGAGATGT 58.947 34.615 17.23 4.35 0.00 3.06
2634 3268 7.493743 ACTGAAATATGCTAGCTTTGAGATG 57.506 36.000 17.23 3.73 0.00 2.90
2635 3269 9.790344 ATAACTGAAATATGCTAGCTTTGAGAT 57.210 29.630 17.23 8.97 0.00 2.75
2636 3270 9.618890 AATAACTGAAATATGCTAGCTTTGAGA 57.381 29.630 17.23 0.00 0.00 3.27
2641 3275 9.342308 TGCTAAATAACTGAAATATGCTAGCTT 57.658 29.630 17.23 12.56 32.01 3.74
2642 3276 8.908786 TGCTAAATAACTGAAATATGCTAGCT 57.091 30.769 17.23 4.07 32.01 3.32
2643 3277 9.766277 GATGCTAAATAACTGAAATATGCTAGC 57.234 33.333 8.10 8.10 31.71 3.42
2645 3279 9.231297 GGGATGCTAAATAACTGAAATATGCTA 57.769 33.333 0.00 0.00 0.00 3.49
2646 3280 7.177392 GGGGATGCTAAATAACTGAAATATGCT 59.823 37.037 0.00 0.00 0.00 3.79
2647 3281 7.039784 TGGGGATGCTAAATAACTGAAATATGC 60.040 37.037 0.00 0.00 0.00 3.14
2648 3282 8.408043 TGGGGATGCTAAATAACTGAAATATG 57.592 34.615 0.00 0.00 0.00 1.78
2651 3285 8.860088 GTTATGGGGATGCTAAATAACTGAAAT 58.140 33.333 8.73 0.00 33.12 2.17
2652 3286 8.058847 AGTTATGGGGATGCTAAATAACTGAAA 58.941 33.333 14.24 0.00 40.67 2.69
2653 3287 7.582719 AGTTATGGGGATGCTAAATAACTGAA 58.417 34.615 14.24 0.00 40.67 3.02
2654 3288 7.149202 AGTTATGGGGATGCTAAATAACTGA 57.851 36.000 14.24 0.00 40.67 3.41
2699 3341 6.693315 ATGGGCAAAACATATACTGTACAC 57.307 37.500 0.00 0.00 36.98 2.90
2749 3402 4.627284 TTATCGAACAAACTCCCTCCAA 57.373 40.909 0.00 0.00 0.00 3.53
2814 3467 4.799419 TGTAAGACGTTTTTGCAGTACC 57.201 40.909 0.00 0.00 0.00 3.34
2881 3534 8.832735 AGTACAACTATATTCTCCCCTCAAAAA 58.167 33.333 0.00 0.00 0.00 1.94
2882 3535 8.265055 CAGTACAACTATATTCTCCCCTCAAAA 58.735 37.037 0.00 0.00 0.00 2.44
2883 3536 7.622081 TCAGTACAACTATATTCTCCCCTCAAA 59.378 37.037 0.00 0.00 0.00 2.69
2884 3537 7.130099 TCAGTACAACTATATTCTCCCCTCAA 58.870 38.462 0.00 0.00 0.00 3.02
2885 3538 6.679542 TCAGTACAACTATATTCTCCCCTCA 58.320 40.000 0.00 0.00 0.00 3.86
2886 3539 7.784470 ATCAGTACAACTATATTCTCCCCTC 57.216 40.000 0.00 0.00 0.00 4.30
2887 3540 8.432805 CAAATCAGTACAACTATATTCTCCCCT 58.567 37.037 0.00 0.00 0.00 4.79
2888 3541 7.173390 GCAAATCAGTACAACTATATTCTCCCC 59.827 40.741 0.00 0.00 0.00 4.81
2889 3542 7.095607 CGCAAATCAGTACAACTATATTCTCCC 60.096 40.741 0.00 0.00 0.00 4.30
2890 3543 7.569591 GCGCAAATCAGTACAACTATATTCTCC 60.570 40.741 0.30 0.00 0.00 3.71
2891 3544 7.169982 AGCGCAAATCAGTACAACTATATTCTC 59.830 37.037 11.47 0.00 0.00 2.87
2892 3545 6.986817 AGCGCAAATCAGTACAACTATATTCT 59.013 34.615 11.47 0.00 0.00 2.40
2924 3588 2.549754 CCCACAAGATATCGCCATTGAC 59.450 50.000 8.87 0.00 0.00 3.18
2945 3609 0.381801 CTGTCACAAGCCCACAACAC 59.618 55.000 0.00 0.00 0.00 3.32
2970 3634 3.993081 AGAAAATGACGCACAGAGAAGAG 59.007 43.478 0.00 0.00 0.00 2.85
3026 3692 7.050970 AGTTAAGCACACCTCGATCAATATA 57.949 36.000 0.00 0.00 0.00 0.86
3076 3750 5.041951 TCAAACTTAACATTGTCATCGCC 57.958 39.130 0.00 0.00 0.00 5.54
3260 3969 1.022451 TCGTTGGCCCGTTCATTAGC 61.022 55.000 0.00 0.00 0.00 3.09
3267 3976 2.032071 CTTCCTCGTTGGCCCGTT 59.968 61.111 0.00 0.00 35.26 4.44
3364 4073 7.864379 TGAAACTAGTTACTTTGAGTCTTACCG 59.136 37.037 8.92 0.00 0.00 4.02
3432 4145 1.406860 GGCCTGGAAACAAAAGCCCA 61.407 55.000 0.00 0.00 42.40 5.36
3445 4163 1.004080 CTGGATCGCTATGGCCTGG 60.004 63.158 3.32 0.00 34.44 4.45
3450 4168 2.398252 ATGCATCTGGATCGCTATGG 57.602 50.000 0.00 0.00 0.00 2.74
3460 4178 0.814410 AGCTCGAGCAATGCATCTGG 60.814 55.000 36.87 0.00 45.16 3.86
3577 4298 3.149196 CCTAGTGCCTGTGTTTCACATT 58.851 45.455 3.06 0.00 43.71 2.71
3680 4413 2.165030 GTCACCATCCCAATGCTCAAAG 59.835 50.000 0.00 0.00 0.00 2.77
3687 4420 2.330440 TCATCGTCACCATCCCAATG 57.670 50.000 0.00 0.00 0.00 2.82
3867 4726 1.403679 CCGTTGAAACACAAGGAGCAA 59.596 47.619 0.00 0.00 44.13 3.91
3868 4727 1.021202 CCGTTGAAACACAAGGAGCA 58.979 50.000 0.00 0.00 44.13 4.26
3892 4751 6.477688 AGTGCTCAAACTTCACAATTCAATTG 59.522 34.615 8.67 8.67 45.59 2.32
3997 4862 0.395311 CTCAGCGGGAGGTACTGGTA 60.395 60.000 0.00 0.00 41.55 3.25
4102 4967 1.713297 AAGGGAGTGGTGTCTAACGT 58.287 50.000 0.00 0.00 0.00 3.99
4103 4968 2.299297 AGAAAGGGAGTGGTGTCTAACG 59.701 50.000 0.00 0.00 0.00 3.18
4119 4984 8.509690 TCAAATGCATAAGAACTGAAGAGAAAG 58.490 33.333 0.00 0.00 0.00 2.62
4155 5020 1.668751 TCCACAAGTTTCAAGTCGTGC 59.331 47.619 0.00 0.00 0.00 5.34
4204 5069 8.982723 AGTATCTTCTCTTGGTTAAAGCATCTA 58.017 33.333 0.00 0.00 35.69 1.98
4293 5187 2.020720 TCTTCTCAGCTCAGTCCGATC 58.979 52.381 0.00 0.00 0.00 3.69
4389 5318 0.111061 AGTGATGAGCTGGGTTGCAA 59.889 50.000 0.00 0.00 34.99 4.08
4466 5395 7.012515 TCGAACAATGCCTTTTAACTCTTGTAA 59.987 33.333 0.00 0.00 0.00 2.41
4474 5403 6.612306 AGAATCTCGAACAATGCCTTTTAAC 58.388 36.000 0.00 0.00 0.00 2.01
4480 5409 4.213564 AGAAGAATCTCGAACAATGCCT 57.786 40.909 0.00 0.00 0.00 4.75
4578 5509 2.408565 TCTTGAGGTTGGTCTTGGAGT 58.591 47.619 0.00 0.00 0.00 3.85
4763 7216 6.714810 TGTATAGGGTTCAACCATGCAATATC 59.285 38.462 9.35 0.00 41.02 1.63
4770 7223 3.569701 GCCATGTATAGGGTTCAACCATG 59.430 47.826 9.35 2.05 41.02 3.66
4836 7311 7.598118 CAGGTATAATAGACATCAAGCACTCTG 59.402 40.741 0.00 0.00 0.00 3.35
4939 7422 4.655963 AGGCAAATGTGTGTATCTTCAGT 58.344 39.130 0.00 0.00 0.00 3.41
4969 7452 6.128418 GCAGTGGAAGAAAGTTAGAACTGATC 60.128 42.308 3.79 0.00 39.66 2.92
5190 7722 4.372656 AGGAACTCAACTTCTTGTTCTCG 58.627 43.478 0.00 0.00 38.86 4.04
5359 8015 1.506493 CCAACTGAGTGACTGCTGAC 58.494 55.000 0.00 0.00 0.00 3.51
5434 8092 5.946972 TCTCGTAGAAAATCCTTCAGAGAGT 59.053 40.000 0.00 0.00 34.09 3.24
5490 8148 3.706594 TCAGGAAAGCCCATGTCTACTAG 59.293 47.826 0.00 0.00 37.41 2.57
5536 8194 5.809001 TCAGAAAGAGCATACCACATCTTT 58.191 37.500 0.00 0.00 42.96 2.52
5588 8248 5.363005 TGTATAGTCTAAGTTGCCTTCTCCC 59.637 44.000 0.00 0.00 31.89 4.30
5647 8309 9.737427 CTAATCGAATCAACTAATACACAGAGT 57.263 33.333 0.00 0.00 0.00 3.24
5934 8619 2.960129 GGGATACGCGTTGGCTCG 60.960 66.667 20.78 0.00 36.88 5.03
6508 9208 4.380973 CGCAAGAGATTTGTACCTCTCTGA 60.381 45.833 16.16 0.00 45.78 3.27
6820 9523 0.443869 CCAATCACCAAGTCGAAGCG 59.556 55.000 0.00 0.00 0.00 4.68
6948 9651 5.527951 TCCTAGAGATAAGCACTAAGTGACG 59.472 44.000 0.00 0.00 35.23 4.35
7418 10135 7.735917 TCAGGTCACATTTACCTTCCTATATG 58.264 38.462 0.00 0.00 45.26 1.78
7434 10151 2.902486 AGCAGAAGAAGATCAGGTCACA 59.098 45.455 0.00 0.00 0.00 3.58
7435 10152 3.260740 CAGCAGAAGAAGATCAGGTCAC 58.739 50.000 0.00 0.00 0.00 3.67
7438 10155 5.221722 TGTTAACAGCAGAAGAAGATCAGGT 60.222 40.000 3.59 0.00 0.00 4.00
7439 10156 5.240891 TGTTAACAGCAGAAGAAGATCAGG 58.759 41.667 3.59 0.00 0.00 3.86
7440 10157 6.370994 ACATGTTAACAGCAGAAGAAGATCAG 59.629 38.462 14.65 0.00 0.00 2.90
7441 10158 6.233434 ACATGTTAACAGCAGAAGAAGATCA 58.767 36.000 14.65 0.00 0.00 2.92
7442 10159 6.734104 ACATGTTAACAGCAGAAGAAGATC 57.266 37.500 14.65 0.00 0.00 2.75
7443 10160 7.547370 GTCTACATGTTAACAGCAGAAGAAGAT 59.453 37.037 14.65 0.00 0.00 2.40
7444 10161 6.868864 GTCTACATGTTAACAGCAGAAGAAGA 59.131 38.462 14.65 5.50 0.00 2.87
7445 10162 6.646653 TGTCTACATGTTAACAGCAGAAGAAG 59.353 38.462 14.65 3.42 0.00 2.85
7446 10163 6.521162 TGTCTACATGTTAACAGCAGAAGAA 58.479 36.000 14.65 3.63 0.00 2.52
7462 10179 3.508845 AAACACCCTGCTTGTCTACAT 57.491 42.857 0.00 0.00 0.00 2.29
7584 10301 7.059156 CCATCCCAGAATAGAAGATGTCTTTT 58.941 38.462 0.00 0.00 37.84 2.27
7613 10330 7.596494 TCTGAATTTGTATCAGCTTCTTTTGG 58.404 34.615 0.00 0.00 43.19 3.28
7693 10410 2.030805 GGTACTTGTTTCAGCTTGGCAG 60.031 50.000 0.00 0.00 0.00 4.85
7718 10435 6.351286 GCATTTCAAGTTCTATCCCCAACAAT 60.351 38.462 0.00 0.00 0.00 2.71
7720 10437 4.462483 GCATTTCAAGTTCTATCCCCAACA 59.538 41.667 0.00 0.00 0.00 3.33
7722 10439 4.671831 TGCATTTCAAGTTCTATCCCCAA 58.328 39.130 0.00 0.00 0.00 4.12
7756 10474 3.316029 CCAAAGAATGAAGTGTGCTGTCA 59.684 43.478 0.00 0.00 0.00 3.58
7757 10475 3.316308 ACCAAAGAATGAAGTGTGCTGTC 59.684 43.478 0.00 0.00 0.00 3.51
7793 10511 4.382291 AGTGAAATACCAGTTACGCACAA 58.618 39.130 0.00 0.00 0.00 3.33
7797 10515 3.617263 CCTGAGTGAAATACCAGTTACGC 59.383 47.826 0.00 0.00 0.00 4.42
7798 10516 4.181578 CCCTGAGTGAAATACCAGTTACG 58.818 47.826 0.00 0.00 0.00 3.18
7828 10547 7.011857 TGAGGCACAATGTATTTTTCCAAAAAC 59.988 33.333 0.00 0.00 40.33 2.43
7846 10565 0.250252 TGAAAGCGACATGAGGCACA 60.250 50.000 13.59 8.53 0.00 4.57
7997 10717 2.821679 AAAGGGCGTTAGGCAGGCTC 62.822 60.000 0.00 0.00 46.16 4.70
8024 10751 7.148641 GCTAGCACAGAAGAAGCACTATATTA 58.851 38.462 10.63 0.00 33.38 0.98
8026 10753 5.069648 TGCTAGCACAGAAGAAGCACTATAT 59.930 40.000 14.93 0.00 38.22 0.86
8028 10755 3.196469 TGCTAGCACAGAAGAAGCACTAT 59.804 43.478 14.93 0.00 38.22 2.12
8029 10756 2.562738 TGCTAGCACAGAAGAAGCACTA 59.437 45.455 14.93 0.00 38.22 2.74
8030 10757 1.345741 TGCTAGCACAGAAGAAGCACT 59.654 47.619 14.93 0.00 38.22 4.40
8044 10771 4.342378 TCCCGAATATCTATCCATGCTAGC 59.658 45.833 8.10 8.10 0.00 3.42
8083 10810 9.228949 CCAACATCCAAAATATCCATTCAAAAA 57.771 29.630 0.00 0.00 0.00 1.94
8124 10851 5.981315 ACTGCTGTTGTTTTCAATCTTGATG 59.019 36.000 0.00 0.00 42.08 3.07
8125 10852 5.981315 CACTGCTGTTGTTTTCAATCTTGAT 59.019 36.000 0.00 0.00 42.08 2.57
8126 10853 5.342433 CACTGCTGTTGTTTTCAATCTTGA 58.658 37.500 0.00 0.00 42.08 3.02
8147 10874 9.220635 GCAATTGTTTTCTTTTTGTAAATCCAC 57.779 29.630 7.40 0.00 0.00 4.02
8206 10935 7.661437 GGTATGAATGATCTAACTTACCATGCA 59.339 37.037 15.92 0.00 34.98 3.96
8274 11003 9.713740 GAAGCAATTGTTTACTGAATGATCTAG 57.286 33.333 7.58 0.00 0.00 2.43
8279 11008 8.816144 GTTTTGAAGCAATTGTTTACTGAATGA 58.184 29.630 7.58 0.00 0.00 2.57
8316 11092 3.375299 GTGCAGTAGATAAAGGCAACCAG 59.625 47.826 0.00 0.00 36.08 4.00
8331 11110 2.221169 CTTCTGGTTTGCAGTGCAGTA 58.779 47.619 18.81 7.92 40.61 2.74
8340 11119 3.486285 GCTTCAGCTTCTGGTTTGC 57.514 52.632 0.00 0.00 38.21 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.