Multiple sequence alignment - TraesCS6B01G186500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G186500 chr6B 100.000 4569 0 0 1 4569 212572626 212568058 0.000000e+00 8438.0
1 TraesCS6B01G186500 chr6A 84.335 1781 161 53 1855 3585 158918055 158919767 0.000000e+00 1635.0
2 TraesCS6B01G186500 chr6A 93.610 579 25 3 1022 1590 158916317 158916893 0.000000e+00 854.0
3 TraesCS6B01G186500 chr6A 94.884 430 19 2 4113 4542 158920279 158920705 0.000000e+00 669.0
4 TraesCS6B01G186500 chr6A 85.993 564 42 12 24 563 158915378 158915928 1.840000e-158 569.0
5 TraesCS6B01G186500 chr6A 87.291 299 9 12 717 1004 158916050 158916330 9.540000e-82 315.0
6 TraesCS6B01G186500 chr6A 95.312 128 2 2 486 613 158915928 158916051 2.790000e-47 200.0
7 TraesCS6B01G186500 chr6A 92.366 131 8 2 593 722 108925771 108925900 7.810000e-43 185.0
8 TraesCS6B01G186500 chr6A 90.598 117 9 2 1740 1855 158917023 158917138 2.200000e-33 154.0
9 TraesCS6B01G186500 chr6A 93.750 48 3 0 1642 1689 158916975 158917022 6.340000e-09 73.1
10 TraesCS6B01G186500 chr6D 93.371 875 40 8 3063 3919 120656731 120657605 0.000000e+00 1279.0
11 TraesCS6B01G186500 chr6D 81.053 1272 142 51 1853 3064 120655468 120656700 0.000000e+00 922.0
12 TraesCS6B01G186500 chr6D 96.115 489 18 1 4081 4569 120657653 120658140 0.000000e+00 797.0
13 TraesCS6B01G186500 chr6D 90.435 575 40 6 1070 1631 120654612 120655184 0.000000e+00 743.0
14 TraesCS6B01G186500 chr6D 86.849 403 28 7 24 402 344219439 344219038 1.170000e-115 427.0
15 TraesCS6B01G186500 chr6D 92.708 192 11 2 396 584 120654064 120654255 1.620000e-69 274.0
16 TraesCS6B01G186500 chr6D 86.111 216 16 8 1642 1855 120655238 120655441 2.140000e-53 220.0
17 TraesCS6B01G186500 chr6D 91.892 111 9 0 891 1001 120654443 120654553 6.120000e-34 156.0
18 TraesCS6B01G186500 chr6D 100.000 33 0 0 3891 3923 226778281 226778313 1.370000e-05 62.1
19 TraesCS6B01G186500 chr6D 92.105 38 3 0 1029 1066 120654552 120654589 2.000000e-03 54.7
20 TraesCS6B01G186500 chr5D 86.420 405 29 10 24 402 105068283 105067879 1.970000e-113 420.0
21 TraesCS6B01G186500 chr5D 97.059 34 1 0 3886 3919 329280072 329280039 1.780000e-04 58.4
22 TraesCS6B01G186500 chr2D 86.386 404 30 10 24 402 512911715 512911312 7.070000e-113 418.0
23 TraesCS6B01G186500 chr2D 90.419 167 16 0 3924 4090 649604263 649604429 2.140000e-53 220.0
24 TraesCS6B01G186500 chr5A 85.856 403 33 13 24 402 27775911 27776313 1.530000e-109 407.0
25 TraesCS6B01G186500 chr5A 89.349 169 18 0 3924 4092 345241221 345241389 3.580000e-51 213.0
26 TraesCS6B01G186500 chr5A 94.309 123 7 0 605 727 299768205 299768327 6.030000e-44 189.0
27 TraesCS6B01G186500 chr5A 97.143 35 1 0 3891 3925 691029224 691029258 4.940000e-05 60.2
28 TraesCS6B01G186500 chr1B 85.678 398 32 11 24 397 512445926 512445530 3.310000e-106 396.0
29 TraesCS6B01G186500 chr1B 89.820 167 16 1 3924 4090 192147996 192148161 3.580000e-51 213.0
30 TraesCS6B01G186500 chr1D 86.523 371 26 8 24 370 77393928 77394298 1.990000e-103 387.0
31 TraesCS6B01G186500 chrUn 90.854 164 15 0 3924 4087 126903364 126903201 2.140000e-53 220.0
32 TraesCS6B01G186500 chrUn 93.651 126 8 0 602 727 88214822 88214947 6.030000e-44 189.0
33 TraesCS6B01G186500 chr5B 90.419 167 16 0 3924 4090 312766160 312766326 2.140000e-53 220.0
34 TraesCS6B01G186500 chr5B 88.757 169 19 0 3924 4092 293952200 293952032 1.670000e-49 207.0
35 TraesCS6B01G186500 chr5B 95.041 121 4 2 600 719 666201981 666202100 6.030000e-44 189.0
36 TraesCS6B01G186500 chr3D 89.157 166 16 2 3924 4089 45051197 45051034 5.990000e-49 206.0
37 TraesCS6B01G186500 chr3D 93.798 129 5 3 597 723 435646728 435646855 1.680000e-44 191.0
38 TraesCS6B01G186500 chr2A 88.623 167 19 0 3924 4090 386058406 386058240 2.160000e-48 204.0
39 TraesCS6B01G186500 chr2B 88.235 170 19 1 3926 4095 152858920 152859088 7.750000e-48 202.0
40 TraesCS6B01G186500 chr2B 94.872 39 2 0 3889 3927 105917874 105917836 1.370000e-05 62.1
41 TraesCS6B01G186500 chr3B 98.198 111 2 0 612 722 48886472 48886582 1.300000e-45 195.0
42 TraesCS6B01G186500 chr3B 100.000 33 0 0 3891 3923 665987700 665987668 1.370000e-05 62.1
43 TraesCS6B01G186500 chr7A 95.161 124 3 3 603 724 381253912 381254034 4.660000e-45 193.0
44 TraesCS6B01G186500 chr7B 93.701 127 6 1 609 733 125267566 125267440 6.030000e-44 189.0
45 TraesCS6B01G186500 chr7B 93.701 127 6 1 609 733 125303631 125303505 6.030000e-44 189.0
46 TraesCS6B01G186500 chr7B 87.234 94 12 0 3996 4089 140933883 140933790 1.740000e-19 108.0
47 TraesCS6B01G186500 chr7D 100.000 33 0 0 3891 3923 43876386 43876354 1.370000e-05 62.1
48 TraesCS6B01G186500 chr7D 97.297 37 0 1 3886 3921 133308179 133308215 1.370000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G186500 chr6B 212568058 212572626 4568 True 8438.0000 8438 100.000000 1 4569 1 chr6B.!!$R1 4568
1 TraesCS6B01G186500 chr6A 158915378 158920705 5327 False 558.6375 1635 90.721625 24 4542 8 chr6A.!!$F2 4518
2 TraesCS6B01G186500 chr6D 120654064 120658140 4076 False 555.7125 1279 90.473750 396 4569 8 chr6D.!!$F2 4173

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 137 0.107831 GGTCCTGCTAACCACACACA 59.892 55.0 0.0 0.0 36.75 3.72 F
318 343 0.179089 CAGCCCAGTCGAATCAGAGG 60.179 60.0 0.0 0.0 0.00 3.69 F
1575 1718 0.043940 AGAACAGAGGATCAGGCCCT 59.956 55.0 0.0 0.0 37.82 5.19 F
2091 3199 0.762418 CATGATAACCGCCCCACCTA 59.238 55.0 0.0 0.0 0.00 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1561 1704 0.045469 AAAGGAGGGCCTGATCCTCT 59.955 55.0 12.95 8.33 46.28 3.69 R
1632 1775 0.248661 GCTTCTGCTAGCGTCGATGA 60.249 55.0 9.31 0.00 36.03 2.92 R
2444 3591 0.031917 TAGGGCCATTGTCCGTCCTA 60.032 55.0 6.18 0.00 42.85 2.94 R
3586 4799 0.182775 GGTGGGGCTAATCACCGAAT 59.817 55.0 0.00 0.00 43.11 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 5.762179 ACACAATCATCTCCCAAAGAGTA 57.238 39.130 0.00 0.00 43.71 2.59
53 54 4.335416 TCCCAAAGAGTAGCAAATTCCTG 58.665 43.478 0.00 0.00 0.00 3.86
77 78 0.764890 TGGGTCAAAGTGAGTCCCTG 59.235 55.000 5.74 0.00 34.66 4.45
79 80 0.951040 GGTCAAAGTGAGTCCCTGCG 60.951 60.000 0.00 0.00 0.00 5.18
82 83 1.151668 CAAAGTGAGTCCCTGCGAAG 58.848 55.000 0.00 0.00 0.00 3.79
88 89 1.899814 TGAGTCCCTGCGAAGTGTTAT 59.100 47.619 0.00 0.00 0.00 1.89
101 103 5.446473 GCGAAGTGTTATTTGACTGATCCAG 60.446 44.000 0.00 0.00 37.52 3.86
118 120 2.241176 TCCAGAAGTTGTTGTCAAGGGT 59.759 45.455 0.00 0.00 33.97 4.34
135 137 0.107831 GGTCCTGCTAACCACACACA 59.892 55.000 0.00 0.00 36.75 3.72
144 146 3.003378 GCTAACCACACACACCTTCTTTC 59.997 47.826 0.00 0.00 0.00 2.62
212 214 2.723322 TCAGCCATGAAGATTCCCAG 57.277 50.000 0.00 0.00 30.61 4.45
218 220 5.595542 CAGCCATGAAGATTCCCAGAATTTA 59.404 40.000 0.00 0.00 0.00 1.40
224 249 4.837093 AGATTCCCAGAATTTACACCGA 57.163 40.909 0.00 0.00 0.00 4.69
247 272 1.212751 GCCGCCGCAAAAAGATCTT 59.787 52.632 0.88 0.88 34.03 2.40
253 278 1.978782 CCGCAAAAAGATCTTTGTCGC 59.021 47.619 21.15 20.10 38.35 5.19
259 284 4.739046 AAAAGATCTTTGTCGCTGTCAG 57.261 40.909 21.15 0.00 32.36 3.51
289 314 1.455822 TTCCATTCCCACCCAAGTCT 58.544 50.000 0.00 0.00 0.00 3.24
317 342 0.820226 TCAGCCCAGTCGAATCAGAG 59.180 55.000 0.00 0.00 0.00 3.35
318 343 0.179089 CAGCCCAGTCGAATCAGAGG 60.179 60.000 0.00 0.00 0.00 3.69
323 348 1.338105 CCAGTCGAATCAGAGGCAACA 60.338 52.381 0.00 0.00 41.41 3.33
329 354 2.791560 CGAATCAGAGGCAACATAGTCG 59.208 50.000 0.00 0.00 41.41 4.18
336 361 1.429148 GGCAACATAGTCGAAGGGCG 61.429 60.000 0.00 0.00 42.69 6.13
353 378 2.680913 CGGCCGCAAACTTCTCCAG 61.681 63.158 14.67 0.00 0.00 3.86
376 401 2.917227 GCACACCCAAACCCCCAG 60.917 66.667 0.00 0.00 0.00 4.45
378 403 1.464722 CACACCCAAACCCCCAGAT 59.535 57.895 0.00 0.00 0.00 2.90
390 415 3.754976 ACCCCCAGATATCTTGGGTTTA 58.245 45.455 30.75 0.00 45.08 2.01
391 416 3.462205 ACCCCCAGATATCTTGGGTTTAC 59.538 47.826 30.75 0.00 45.08 2.01
392 417 3.461831 CCCCCAGATATCTTGGGTTTACA 59.538 47.826 30.75 0.00 45.08 2.41
397 422 6.051717 CCAGATATCTTGGGTTTACAGACAG 58.948 44.000 1.33 0.00 0.00 3.51
478 503 8.821686 ATGTGTATAGTGGGAAATGAAATCAA 57.178 30.769 0.00 0.00 0.00 2.57
507 596 4.038883 ACGAAAGCAGACTGTTAGGTACTT 59.961 41.667 3.99 0.00 41.75 2.24
510 599 2.832733 AGCAGACTGTTAGGTACTTCCC 59.167 50.000 3.99 0.00 41.75 3.97
620 712 6.980416 AAGTACATACAATCTACTCCCTCC 57.020 41.667 0.00 0.00 0.00 4.30
621 713 5.071370 AGTACATACAATCTACTCCCTCCG 58.929 45.833 0.00 0.00 0.00 4.63
622 714 3.912248 ACATACAATCTACTCCCTCCGT 58.088 45.455 0.00 0.00 0.00 4.69
623 715 4.287552 ACATACAATCTACTCCCTCCGTT 58.712 43.478 0.00 0.00 0.00 4.44
624 716 4.341520 ACATACAATCTACTCCCTCCGTTC 59.658 45.833 0.00 0.00 0.00 3.95
625 717 2.108970 ACAATCTACTCCCTCCGTTCC 58.891 52.381 0.00 0.00 0.00 3.62
626 718 2.108168 CAATCTACTCCCTCCGTTCCA 58.892 52.381 0.00 0.00 0.00 3.53
627 719 2.500098 CAATCTACTCCCTCCGTTCCAA 59.500 50.000 0.00 0.00 0.00 3.53
628 720 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
629 721 2.829023 TCTACTCCCTCCGTTCCAAAT 58.171 47.619 0.00 0.00 0.00 2.32
630 722 3.178865 TCTACTCCCTCCGTTCCAAATT 58.821 45.455 0.00 0.00 0.00 1.82
631 723 4.355549 TCTACTCCCTCCGTTCCAAATTA 58.644 43.478 0.00 0.00 0.00 1.40
632 724 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
633 725 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
634 726 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
635 727 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
636 728 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
637 729 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
638 730 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
639 731 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
640 732 1.990563 CGTTCCAAATTACTCGTCGCT 59.009 47.619 0.00 0.00 0.00 4.93
641 733 2.222508 CGTTCCAAATTACTCGTCGCTG 60.223 50.000 0.00 0.00 0.00 5.18
642 734 2.991190 GTTCCAAATTACTCGTCGCTGA 59.009 45.455 0.00 0.00 0.00 4.26
643 735 3.306917 TCCAAATTACTCGTCGCTGAA 57.693 42.857 0.00 0.00 0.00 3.02
644 736 3.655486 TCCAAATTACTCGTCGCTGAAA 58.345 40.909 0.00 0.00 0.00 2.69
645 737 4.250464 TCCAAATTACTCGTCGCTGAAAT 58.750 39.130 0.00 0.00 0.00 2.17
646 738 4.092821 TCCAAATTACTCGTCGCTGAAATG 59.907 41.667 0.00 0.00 0.00 2.32
647 739 4.334443 CAAATTACTCGTCGCTGAAATGG 58.666 43.478 0.00 0.00 0.00 3.16
648 740 3.520290 ATTACTCGTCGCTGAAATGGA 57.480 42.857 0.00 0.00 0.00 3.41
649 741 3.520290 TTACTCGTCGCTGAAATGGAT 57.480 42.857 0.00 0.00 0.00 3.41
650 742 1.645034 ACTCGTCGCTGAAATGGATG 58.355 50.000 0.00 0.00 0.00 3.51
651 743 1.066858 ACTCGTCGCTGAAATGGATGT 60.067 47.619 0.00 0.00 0.00 3.06
652 744 2.165641 ACTCGTCGCTGAAATGGATGTA 59.834 45.455 0.00 0.00 0.00 2.29
653 745 3.181475 ACTCGTCGCTGAAATGGATGTAT 60.181 43.478 0.00 0.00 0.00 2.29
654 746 3.381045 TCGTCGCTGAAATGGATGTATC 58.619 45.455 0.00 0.00 0.00 2.24
655 747 3.068165 TCGTCGCTGAAATGGATGTATCT 59.932 43.478 0.00 0.00 0.00 1.98
656 748 4.277423 TCGTCGCTGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 0.00 1.98
657 749 4.618912 CGTCGCTGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 0.00 2.43
658 750 5.562890 CGTCGCTGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 0.00 2.43
659 751 6.216569 GTCGCTGAAATGGATGTATCTAGAA 58.783 40.000 0.00 0.00 0.00 2.10
660 752 6.144724 GTCGCTGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 0.00 3.01
661 753 6.040955 TCGCTGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
662 754 7.230712 TCGCTGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
663 755 7.867909 CGCTGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
664 756 9.547753 GCTGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
690 782 5.955488 ACATCTAGATACATCCATACGTGC 58.045 41.667 4.54 0.00 0.00 5.34
691 783 4.680171 TCTAGATACATCCATACGTGCG 57.320 45.455 0.00 0.00 0.00 5.34
692 784 4.320870 TCTAGATACATCCATACGTGCGA 58.679 43.478 0.00 0.00 0.00 5.10
693 785 3.284323 AGATACATCCATACGTGCGAC 57.716 47.619 0.00 0.00 0.00 5.19
694 786 2.621526 AGATACATCCATACGTGCGACA 59.378 45.455 0.00 0.00 0.00 4.35
695 787 2.943449 TACATCCATACGTGCGACAA 57.057 45.000 0.00 0.00 0.00 3.18
696 788 1.640428 ACATCCATACGTGCGACAAG 58.360 50.000 0.00 0.00 0.00 3.16
697 789 1.067142 ACATCCATACGTGCGACAAGT 60.067 47.619 0.00 0.00 0.00 3.16
698 790 2.164827 ACATCCATACGTGCGACAAGTA 59.835 45.455 0.00 7.72 33.49 2.24
699 791 2.554806 TCCATACGTGCGACAAGTAG 57.445 50.000 0.00 4.72 32.62 2.57
700 792 1.814394 TCCATACGTGCGACAAGTAGT 59.186 47.619 0.00 0.00 32.62 2.73
701 793 2.229543 TCCATACGTGCGACAAGTAGTT 59.770 45.455 0.00 0.00 32.62 2.24
702 794 2.597305 CCATACGTGCGACAAGTAGTTC 59.403 50.000 0.00 0.00 32.62 3.01
703 795 1.954437 TACGTGCGACAAGTAGTTCG 58.046 50.000 0.00 0.00 0.00 3.95
704 796 0.662374 ACGTGCGACAAGTAGTTCGG 60.662 55.000 0.00 0.00 0.00 4.30
705 797 0.386352 CGTGCGACAAGTAGTTCGGA 60.386 55.000 0.00 0.00 0.00 4.55
706 798 1.774639 GTGCGACAAGTAGTTCGGAA 58.225 50.000 0.00 0.00 0.00 4.30
707 799 1.454653 GTGCGACAAGTAGTTCGGAAC 59.545 52.381 12.91 12.91 0.00 3.62
730 822 3.827876 GGAGGGAGTAGTATGGAAGCTAC 59.172 52.174 0.00 0.00 38.20 3.58
745 837 1.952266 GCTACGGCGGAAACAGTTCG 61.952 60.000 13.24 0.00 34.28 3.95
761 860 7.835634 AACAGTTCGCCAGAATTTTTAAAAA 57.164 28.000 15.38 15.38 38.80 1.94
782 881 5.972107 AAATGTGGAGGAGAATTGAGTTG 57.028 39.130 0.00 0.00 0.00 3.16
786 888 5.634118 TGTGGAGGAGAATTGAGTTGATTT 58.366 37.500 0.00 0.00 0.00 2.17
788 890 6.016024 TGTGGAGGAGAATTGAGTTGATTTTG 60.016 38.462 0.00 0.00 0.00 2.44
818 921 6.891908 TGAGGAAATGGATTTCTTTAGGGAAG 59.108 38.462 11.04 0.00 44.21 3.46
836 939 4.528206 GGGAAGTTTGAGGAAATGGATTGT 59.472 41.667 0.00 0.00 0.00 2.71
838 941 5.243730 GGAAGTTTGAGGAAATGGATTGTGA 59.756 40.000 0.00 0.00 0.00 3.58
839 942 5.972107 AGTTTGAGGAAATGGATTGTGAG 57.028 39.130 0.00 0.00 0.00 3.51
840 943 5.388654 AGTTTGAGGAAATGGATTGTGAGT 58.611 37.500 0.00 0.00 0.00 3.41
841 944 5.835280 AGTTTGAGGAAATGGATTGTGAGTT 59.165 36.000 0.00 0.00 0.00 3.01
842 945 5.710513 TTGAGGAAATGGATTGTGAGTTG 57.289 39.130 0.00 0.00 0.00 3.16
843 946 4.984295 TGAGGAAATGGATTGTGAGTTGA 58.016 39.130 0.00 0.00 0.00 3.18
844 947 5.384336 TGAGGAAATGGATTGTGAGTTGAA 58.616 37.500 0.00 0.00 0.00 2.69
845 948 5.241506 TGAGGAAATGGATTGTGAGTTGAAC 59.758 40.000 0.00 0.00 0.00 3.18
846 949 5.388654 AGGAAATGGATTGTGAGTTGAACT 58.611 37.500 0.00 0.00 0.00 3.01
847 950 6.542821 AGGAAATGGATTGTGAGTTGAACTA 58.457 36.000 0.00 0.00 0.00 2.24
848 951 6.656693 AGGAAATGGATTGTGAGTTGAACTAG 59.343 38.462 0.00 0.00 0.00 2.57
849 952 6.431234 GGAAATGGATTGTGAGTTGAACTAGT 59.569 38.462 0.00 0.00 0.00 2.57
850 953 7.040409 GGAAATGGATTGTGAGTTGAACTAGTT 60.040 37.037 8.13 8.13 0.00 2.24
851 954 8.918202 AAATGGATTGTGAGTTGAACTAGTTA 57.082 30.769 8.42 0.00 0.00 2.24
852 955 8.918202 AATGGATTGTGAGTTGAACTAGTTAA 57.082 30.769 8.42 0.00 0.00 2.01
853 956 8.918202 ATGGATTGTGAGTTGAACTAGTTAAA 57.082 30.769 8.42 4.42 0.00 1.52
854 957 8.149973 TGGATTGTGAGTTGAACTAGTTAAAC 57.850 34.615 23.46 23.46 34.77 2.01
855 958 7.990886 TGGATTGTGAGTTGAACTAGTTAAACT 59.009 33.333 30.66 30.66 44.73 2.66
856 959 8.837389 GGATTGTGAGTTGAACTAGTTAAACTT 58.163 33.333 30.71 19.10 42.71 2.66
913 1024 2.143925 GTATCTACTGGGCCGAAATGC 58.856 52.381 0.00 0.00 0.00 3.56
990 1101 1.000486 CTTCTCTCCTCGACCCCCA 60.000 63.158 0.00 0.00 0.00 4.96
993 1104 1.305381 CTCTCCTCGACCCCCAAGT 60.305 63.158 0.00 0.00 0.00 3.16
999 1110 2.742372 CGACCCCCAAGTTGCGAG 60.742 66.667 0.00 0.00 0.00 5.03
1000 1111 2.747686 GACCCCCAAGTTGCGAGA 59.252 61.111 0.00 0.00 0.00 4.04
1001 1112 1.671379 GACCCCCAAGTTGCGAGAC 60.671 63.158 0.00 0.00 0.00 3.36
1002 1113 2.391724 GACCCCCAAGTTGCGAGACA 62.392 60.000 0.00 0.00 0.00 3.41
1003 1114 1.672356 CCCCCAAGTTGCGAGACAG 60.672 63.158 0.00 0.00 0.00 3.51
1004 1115 1.071471 CCCCAAGTTGCGAGACAGT 59.929 57.895 0.00 0.00 0.00 3.55
1005 1116 0.320374 CCCCAAGTTGCGAGACAGTA 59.680 55.000 0.00 0.00 0.00 2.74
1006 1117 1.066143 CCCCAAGTTGCGAGACAGTAT 60.066 52.381 0.00 0.00 0.00 2.12
1007 1118 2.615493 CCCCAAGTTGCGAGACAGTATT 60.615 50.000 0.00 0.00 0.00 1.89
1008 1119 2.416547 CCCAAGTTGCGAGACAGTATTG 59.583 50.000 0.00 0.00 0.00 1.90
1009 1120 3.067106 CCAAGTTGCGAGACAGTATTGT 58.933 45.455 0.00 0.00 41.18 2.71
1189 1320 3.827898 CTCGCTCCAGTCGACCCC 61.828 72.222 13.01 0.00 32.08 4.95
1190 1321 4.361971 TCGCTCCAGTCGACCCCT 62.362 66.667 13.01 0.00 0.00 4.79
1191 1322 3.827898 CGCTCCAGTCGACCCCTC 61.828 72.222 13.01 0.00 0.00 4.30
1192 1323 2.363147 GCTCCAGTCGACCCCTCT 60.363 66.667 13.01 0.00 0.00 3.69
1193 1324 2.716017 GCTCCAGTCGACCCCTCTG 61.716 68.421 13.01 3.11 0.00 3.35
1263 1404 2.069430 CCAGGGGAGGAAGAGGAGC 61.069 68.421 0.00 0.00 0.00 4.70
1345 1486 1.749638 GCGACGAGGAGGAGGAGAA 60.750 63.158 0.00 0.00 0.00 2.87
1476 1619 0.476338 TAGCTTGGTTCCTTGTGCCA 59.524 50.000 0.00 0.00 0.00 4.92
1482 1625 1.039856 GGTTCCTTGTGCCATTGTGT 58.960 50.000 0.00 0.00 0.00 3.72
1494 1637 7.643569 TGTGCCATTGTGTGATATCTTAAAT 57.356 32.000 3.98 0.00 0.00 1.40
1528 1671 2.024414 GGGCAATACCATTGAGTGACC 58.976 52.381 3.11 0.00 42.05 4.02
1529 1672 1.670811 GGCAATACCATTGAGTGACCG 59.329 52.381 3.11 0.00 38.86 4.79
1553 1696 5.227569 TCAATCTTCACAAGCTTCACCTA 57.772 39.130 0.00 0.00 0.00 3.08
1560 1703 4.569943 TCACAAGCTTCACCTATGAGAAC 58.430 43.478 0.00 0.00 35.83 3.01
1561 1704 4.040339 TCACAAGCTTCACCTATGAGAACA 59.960 41.667 0.00 0.00 35.83 3.18
1575 1718 0.043940 AGAACAGAGGATCAGGCCCT 59.956 55.000 0.00 0.00 37.82 5.19
1582 1725 2.127708 GAGGATCAGGCCCTCCTTTAA 58.872 52.381 17.71 0.00 42.02 1.52
1593 1736 3.056821 GCCCTCCTTTAAACCATGAACAC 60.057 47.826 0.00 0.00 0.00 3.32
1631 1774 1.732259 TCTTCAGCGCTCCGAAAATTC 59.268 47.619 7.13 0.00 0.00 2.17
1632 1775 1.734465 CTTCAGCGCTCCGAAAATTCT 59.266 47.619 7.13 0.00 0.00 2.40
1636 1779 1.936547 AGCGCTCCGAAAATTCTCATC 59.063 47.619 2.64 0.00 0.00 2.92
1639 1782 2.034507 CGCTCCGAAAATTCTCATCGAC 60.035 50.000 0.00 0.00 38.82 4.20
1680 1866 3.658351 AATCAAAACTAGCATCGACGC 57.342 42.857 0.00 0.00 0.00 5.19
1695 1881 3.787785 TCGACGCTTATTTATGCCTGAA 58.212 40.909 0.00 0.00 0.00 3.02
1700 1886 6.019779 ACGCTTATTTATGCCTGAACAAAA 57.980 33.333 0.00 0.00 0.00 2.44
1702 1888 6.072175 ACGCTTATTTATGCCTGAACAAAAGA 60.072 34.615 0.00 0.00 0.00 2.52
1712 1898 3.954258 CCTGAACAAAAGAAGGTGAGGTT 59.046 43.478 0.00 0.00 0.00 3.50
1713 1899 4.202050 CCTGAACAAAAGAAGGTGAGGTTG 60.202 45.833 0.00 0.00 0.00 3.77
1714 1900 4.594970 TGAACAAAAGAAGGTGAGGTTGA 58.405 39.130 0.00 0.00 0.00 3.18
1715 1901 5.200483 TGAACAAAAGAAGGTGAGGTTGAT 58.800 37.500 0.00 0.00 0.00 2.57
1716 1902 5.067674 TGAACAAAAGAAGGTGAGGTTGATG 59.932 40.000 0.00 0.00 0.00 3.07
1717 1903 4.536765 ACAAAAGAAGGTGAGGTTGATGT 58.463 39.130 0.00 0.00 0.00 3.06
1728 1914 1.625818 AGGTTGATGTCCTGACCTCAC 59.374 52.381 4.98 2.22 38.03 3.51
1729 1915 1.347707 GGTTGATGTCCTGACCTCACA 59.652 52.381 4.98 0.00 36.06 3.58
1730 1916 2.224523 GGTTGATGTCCTGACCTCACAA 60.225 50.000 4.98 0.00 36.06 3.33
1731 1917 3.070018 GTTGATGTCCTGACCTCACAAG 58.930 50.000 4.98 0.00 36.06 3.16
1732 1918 2.329267 TGATGTCCTGACCTCACAAGT 58.671 47.619 1.73 0.00 32.36 3.16
1733 1919 2.300152 TGATGTCCTGACCTCACAAGTC 59.700 50.000 1.73 0.00 32.36 3.01
1734 1920 1.788229 TGTCCTGACCTCACAAGTCA 58.212 50.000 0.00 0.00 41.84 3.41
1737 1923 2.115427 TCCTGACCTCACAAGTCACAA 58.885 47.619 0.00 0.00 39.29 3.33
1760 1946 4.166725 AGTGATTGATTATTGGCCCTCTGA 59.833 41.667 0.00 0.00 0.00 3.27
1832 2020 2.359230 GAAGAGCGCCAAGGCAGT 60.359 61.111 12.19 0.00 42.06 4.40
1838 2026 4.335647 CGCCAAGGCAGTCCCAGT 62.336 66.667 12.19 0.00 42.06 4.00
1951 3056 5.366477 TGTATCTGATCATCTACTTGGGCAA 59.634 40.000 13.14 0.00 0.00 4.52
1954 3059 4.657504 TCTGATCATCTACTTGGGCAAGAT 59.342 41.667 0.00 0.00 40.79 2.40
1961 3066 6.945435 TCATCTACTTGGGCAAGATACAAAAA 59.055 34.615 0.00 0.00 40.79 1.94
2030 3138 6.440436 GCCGTAAATTCCAAACAGTCTTAAA 58.560 36.000 0.00 0.00 0.00 1.52
2032 3140 7.096353 GCCGTAAATTCCAAACAGTCTTAAAAC 60.096 37.037 0.00 0.00 0.00 2.43
2083 3191 2.616969 ATCACCGCATGATAACCGC 58.383 52.632 0.00 0.00 46.80 5.68
2091 3199 0.762418 CATGATAACCGCCCCACCTA 59.238 55.000 0.00 0.00 0.00 3.08
2116 3224 6.147000 ACCAAACCAAAAATATCGTGAATTGC 59.853 34.615 0.00 0.00 0.00 3.56
2132 3240 7.224949 TCGTGAATTGCGTTTGTATCCATATTA 59.775 33.333 0.00 0.00 0.00 0.98
2203 3321 9.764363 TTGTGATCATTTAACTATAGTGCTAGG 57.236 33.333 6.06 0.00 0.00 3.02
2232 3350 4.423732 TGATGATGATGTGTACGTGACTG 58.576 43.478 0.00 0.00 0.00 3.51
2300 3418 4.536090 TCCAAGGAGAAGGATAAGAGCAAA 59.464 41.667 0.00 0.00 0.00 3.68
2315 3433 3.312697 AGAGCAAACGAAAAGACAAGGAC 59.687 43.478 0.00 0.00 0.00 3.85
2330 3448 3.458189 CAAGGACGTTGTGAGTTCTCTT 58.542 45.455 0.00 0.00 0.00 2.85
2333 3451 2.795470 GGACGTTGTGAGTTCTCTTGAC 59.205 50.000 0.00 0.00 0.00 3.18
2366 3488 6.456501 AGAGTATCAACCACAGTAGTTTGTC 58.543 40.000 0.00 0.00 37.82 3.18
2373 3495 7.097192 TCAACCACAGTAGTTTGTCTATGATC 58.903 38.462 0.00 0.00 0.00 2.92
2377 3499 8.758829 ACCACAGTAGTTTGTCTATGATCAATA 58.241 33.333 0.00 0.00 0.00 1.90
2378 3500 9.770097 CCACAGTAGTTTGTCTATGATCAATAT 57.230 33.333 0.00 0.00 0.00 1.28
2406 3528 2.233922 TCTGGACCTTTTAGCTCTTCGG 59.766 50.000 0.00 0.00 0.00 4.30
2418 3540 2.808543 AGCTCTTCGGTAGCACTTTTTG 59.191 45.455 7.20 0.00 42.62 2.44
2420 3542 3.003378 GCTCTTCGGTAGCACTTTTTGTT 59.997 43.478 0.00 0.00 39.83 2.83
2421 3543 4.527564 CTCTTCGGTAGCACTTTTTGTTG 58.472 43.478 0.00 0.00 0.00 3.33
2422 3544 3.942748 TCTTCGGTAGCACTTTTTGTTGT 59.057 39.130 0.00 0.00 0.00 3.32
2423 3545 4.396790 TCTTCGGTAGCACTTTTTGTTGTT 59.603 37.500 0.00 0.00 0.00 2.83
2424 3546 4.022464 TCGGTAGCACTTTTTGTTGTTG 57.978 40.909 0.00 0.00 0.00 3.33
2444 3591 7.701539 TGTTGTTGCAAAGGTCTGATAATAT 57.298 32.000 0.00 0.00 0.00 1.28
2445 3592 8.800370 TGTTGTTGCAAAGGTCTGATAATATA 57.200 30.769 0.00 0.00 0.00 0.86
2499 3646 7.669722 ACATGAAGTAGGGTTGAACAAATATGT 59.330 33.333 0.00 0.00 43.14 2.29
2528 3675 2.496899 ACCATTCGGAAGCACATCTT 57.503 45.000 0.00 0.00 37.83 2.40
2539 3686 4.333926 GGAAGCACATCTTGTAGGCTTAAG 59.666 45.833 0.00 0.00 38.97 1.85
2582 3741 0.107945 TGCAACCAACCTGGCAAAAC 60.108 50.000 0.00 0.00 42.67 2.43
2589 3748 1.067516 CAACCTGGCAAAACTGTCCAG 59.932 52.381 6.34 6.34 45.24 3.86
2605 3764 4.148838 TGTCCAGACCATGTTTTTAAGGG 58.851 43.478 0.00 0.00 0.00 3.95
2624 3783 3.394606 AGGGGTCTTTGAAGCACTCTTAA 59.605 43.478 0.00 0.00 31.48 1.85
2644 3803 0.537371 AACTGAACCTGCCCCTTTCG 60.537 55.000 0.00 0.00 0.00 3.46
2653 3812 2.171870 CCTGCCCCTTTCGAGGTAAATA 59.828 50.000 0.00 0.00 0.00 1.40
2681 3840 8.297470 TCAGGCTAAGATATTGCAAATTTCTT 57.703 30.769 19.42 19.42 0.00 2.52
2684 3844 8.411683 AGGCTAAGATATTGCAAATTTCTTCAG 58.588 33.333 19.19 15.99 0.00 3.02
2688 3848 8.752766 AAGATATTGCAAATTTCTTCAGTGTG 57.247 30.769 1.71 0.00 0.00 3.82
2718 3878 7.075674 TGATATGCAAGTCTGTTGTATTGTG 57.924 36.000 0.00 0.00 0.00 3.33
2752 3913 4.327680 AGTTCCATAGAAACTTGGCAGAC 58.672 43.478 0.00 0.00 32.58 3.51
2754 3915 5.248477 AGTTCCATAGAAACTTGGCAGACTA 59.752 40.000 0.00 0.00 32.58 2.59
2761 3922 9.330063 CATAGAAACTTGGCAGACTATATTTCA 57.670 33.333 0.00 0.00 0.00 2.69
2767 3928 8.023021 ACTTGGCAGACTATATTTCACATCTA 57.977 34.615 0.00 0.00 0.00 1.98
2823 3984 8.862325 TGTCATTGAACTAAAATAGTGATGGT 57.138 30.769 0.00 0.00 39.39 3.55
2836 3997 8.451908 AAATAGTGATGGTAATTTAGGTGCTC 57.548 34.615 0.00 0.00 0.00 4.26
2840 4001 7.806180 AGTGATGGTAATTTAGGTGCTCTATT 58.194 34.615 0.00 0.00 0.00 1.73
2841 4002 8.275040 AGTGATGGTAATTTAGGTGCTCTATTT 58.725 33.333 0.00 0.00 0.00 1.40
2842 4003 8.903820 GTGATGGTAATTTAGGTGCTCTATTTT 58.096 33.333 0.00 0.00 0.00 1.82
2879 4040 2.548464 TTGCCTTATCCCCTGCAATT 57.452 45.000 0.00 0.00 38.68 2.32
2884 4045 4.161377 TGCCTTATCCCCTGCAATTTTTAC 59.839 41.667 0.00 0.00 0.00 2.01
2885 4046 4.161377 GCCTTATCCCCTGCAATTTTTACA 59.839 41.667 0.00 0.00 0.00 2.41
2888 4049 3.252554 TCCCCTGCAATTTTTACACCT 57.747 42.857 0.00 0.00 0.00 4.00
2890 4051 2.632512 CCCCTGCAATTTTTACACCTGT 59.367 45.455 0.00 0.00 0.00 4.00
2900 4061 7.870445 GCAATTTTTACACCTGTAATGAAAGGA 59.130 33.333 0.00 0.00 39.89 3.36
2924 4085 7.234988 GGATTGTAGTATATACACCCCTGAAGT 59.765 40.741 15.18 0.00 0.00 3.01
2938 4099 3.969287 CTGAAGTGATCTTGAGGACCA 57.031 47.619 0.00 0.00 32.63 4.02
2941 4102 5.982356 CTGAAGTGATCTTGAGGACCATAA 58.018 41.667 0.00 0.00 32.63 1.90
3032 4202 6.862711 AGTAGGTTGTTAAGAAAGAAGTGC 57.137 37.500 0.00 0.00 0.00 4.40
3033 4203 4.813296 AGGTTGTTAAGAAAGAAGTGCG 57.187 40.909 0.00 0.00 0.00 5.34
3040 4210 0.250901 AGAAAGAAGTGCGGCACCAT 60.251 50.000 28.14 18.23 34.49 3.55
3050 4220 1.952990 TGCGGCACCATATGTATTTGG 59.047 47.619 0.00 0.55 39.02 3.28
3052 4222 2.621055 GCGGCACCATATGTATTTGGAA 59.379 45.455 8.11 0.00 36.79 3.53
3053 4223 3.255642 GCGGCACCATATGTATTTGGAAT 59.744 43.478 8.11 0.00 36.79 3.01
3054 4224 4.797471 CGGCACCATATGTATTTGGAATG 58.203 43.478 8.11 0.00 36.79 2.67
3057 4227 5.536161 GGCACCATATGTATTTGGAATGACT 59.464 40.000 8.11 0.00 36.79 3.41
3071 4273 9.739276 ATTTGGAATGACTAGTTAGTGATTGAA 57.261 29.630 8.41 2.83 39.63 2.69
3086 4288 5.591877 AGTGATTGAACTTGCTTGTTCTTCT 59.408 36.000 18.17 7.39 44.63 2.85
3096 4298 2.227626 GCTTGTTCTTCTCCTGCCTTTC 59.772 50.000 0.00 0.00 0.00 2.62
3103 4305 3.328931 TCTTCTCCTGCCTTTCTCATGTT 59.671 43.478 0.00 0.00 0.00 2.71
3128 4330 2.811410 TGCCTCTCATTTTCAGCCATT 58.189 42.857 0.00 0.00 0.00 3.16
3174 4376 1.968493 TCCAAGGACGACTACTTTGCT 59.032 47.619 0.00 0.00 0.00 3.91
3183 4385 5.107568 GGACGACTACTTTGCTAAGAACAAC 60.108 44.000 14.98 1.88 35.30 3.32
3391 4593 1.122019 AGGCTCGTCTTCCTTGTGGT 61.122 55.000 0.00 0.00 34.23 4.16
3400 4602 1.605710 CTTCCTTGTGGTCTGCAGTTG 59.394 52.381 14.67 0.00 34.23 3.16
3412 4614 2.521465 CAGTTGGGGTGCCTTGCA 60.521 61.111 0.00 0.00 35.60 4.08
3461 4664 2.315176 ACCAAATGCTTGTGCCACTTA 58.685 42.857 0.00 0.00 38.71 2.24
3507 4720 9.178758 GATCTAAACCTGGATGAACAATAGTTT 57.821 33.333 0.00 0.00 38.30 2.66
3508 4721 8.335532 TCTAAACCTGGATGAACAATAGTTTG 57.664 34.615 0.00 0.00 38.30 2.93
3541 4754 7.390823 TGTGTTTAGCATTGATGTTAGTCCTA 58.609 34.615 0.00 0.00 0.00 2.94
3657 4895 7.921786 TTTGATGGGTCTTCTGTATAACTTG 57.078 36.000 0.00 0.00 0.00 3.16
3662 4900 7.743116 TGGGTCTTCTGTATAACTTGGATAA 57.257 36.000 0.00 0.00 0.00 1.75
3682 4920 7.334421 TGGATAATCTTGCTGTAAACTGAAGAC 59.666 37.037 0.00 0.00 0.00 3.01
3688 5128 6.597672 TCTTGCTGTAAACTGAAGACTTTCAA 59.402 34.615 0.00 0.00 42.48 2.69
3694 5134 9.651718 CTGTAAACTGAAGACTTTCAATGTTAC 57.348 33.333 0.00 8.76 42.48 2.50
3762 5220 8.898761 TGTAAACTGATTTTGAAGAGTTTGCTA 58.101 29.630 0.00 0.00 39.98 3.49
3763 5221 9.730420 GTAAACTGATTTTGAAGAGTTTGCTAA 57.270 29.630 0.00 0.00 38.70 3.09
3782 5240 8.504812 TTGCTAATGTTATGAATTAGTCTGCA 57.495 30.769 5.38 0.00 39.04 4.41
3829 5287 2.693069 CAGTCCAGTCTGTTAAGGCAG 58.307 52.381 0.00 0.00 37.81 4.85
3870 5328 1.609208 TCCTCCAGAAAAACTGCAGC 58.391 50.000 15.27 0.00 44.52 5.25
3875 5334 1.891150 CCAGAAAAACTGCAGCCAGAT 59.109 47.619 15.27 0.00 44.52 2.90
3900 5359 0.611714 GGCGAAAACTACTCCCTCCA 59.388 55.000 0.00 0.00 0.00 3.86
3902 5361 2.355818 GGCGAAAACTACTCCCTCCATT 60.356 50.000 0.00 0.00 0.00 3.16
3910 5369 5.832539 ACTACTCCCTCCATTCCATAATG 57.167 43.478 0.00 0.00 41.90 1.90
3913 5372 5.832539 ACTCCCTCCATTCCATAATGTAG 57.167 43.478 0.00 0.00 40.84 2.74
3914 5373 5.227593 ACTCCCTCCATTCCATAATGTAGT 58.772 41.667 0.00 0.00 40.84 2.73
3915 5374 5.072329 ACTCCCTCCATTCCATAATGTAGTG 59.928 44.000 0.00 0.00 40.84 2.74
3916 5375 4.074970 CCCTCCATTCCATAATGTAGTGC 58.925 47.826 0.00 0.00 40.84 4.40
3917 5376 3.748048 CCTCCATTCCATAATGTAGTGCG 59.252 47.826 0.00 0.00 40.84 5.34
3918 5377 4.380531 CTCCATTCCATAATGTAGTGCGT 58.619 43.478 0.00 0.00 40.84 5.24
3919 5378 4.377021 TCCATTCCATAATGTAGTGCGTC 58.623 43.478 0.00 0.00 40.84 5.19
3920 5379 3.498397 CCATTCCATAATGTAGTGCGTCC 59.502 47.826 0.00 0.00 40.84 4.79
3921 5380 3.897141 TTCCATAATGTAGTGCGTCCA 57.103 42.857 0.00 0.00 0.00 4.02
3922 5381 3.173668 TCCATAATGTAGTGCGTCCAC 57.826 47.619 0.00 0.00 42.39 4.02
3923 5382 2.498078 TCCATAATGTAGTGCGTCCACA 59.502 45.455 0.00 0.00 44.53 4.17
3924 5383 2.607635 CCATAATGTAGTGCGTCCACAC 59.392 50.000 0.00 0.00 44.53 3.82
3925 5384 3.258228 CATAATGTAGTGCGTCCACACA 58.742 45.455 0.00 0.31 44.53 3.72
3926 5385 2.472695 AATGTAGTGCGTCCACACAT 57.527 45.000 0.00 2.40 44.53 3.21
3927 5386 3.603158 AATGTAGTGCGTCCACACATA 57.397 42.857 10.17 0.00 44.53 2.29
3928 5387 3.603158 ATGTAGTGCGTCCACACATAA 57.397 42.857 8.86 0.00 44.53 1.90
3929 5388 3.388345 TGTAGTGCGTCCACACATAAA 57.612 42.857 0.00 0.00 44.53 1.40
3930 5389 3.932822 TGTAGTGCGTCCACACATAAAT 58.067 40.909 0.00 0.00 44.53 1.40
3931 5390 3.930229 TGTAGTGCGTCCACACATAAATC 59.070 43.478 0.00 0.00 44.53 2.17
3932 5391 3.052455 AGTGCGTCCACACATAAATCA 57.948 42.857 0.00 0.00 44.53 2.57
3933 5392 3.609853 AGTGCGTCCACACATAAATCAT 58.390 40.909 0.00 0.00 44.53 2.45
3934 5393 4.009675 AGTGCGTCCACACATAAATCATT 58.990 39.130 0.00 0.00 44.53 2.57
3935 5394 4.458989 AGTGCGTCCACACATAAATCATTT 59.541 37.500 0.00 0.00 44.53 2.32
3936 5395 5.048083 AGTGCGTCCACACATAAATCATTTT 60.048 36.000 0.00 0.00 44.53 1.82
3937 5396 6.150307 AGTGCGTCCACACATAAATCATTTTA 59.850 34.615 0.00 0.00 44.53 1.52
3938 5397 6.250527 GTGCGTCCACACATAAATCATTTTAC 59.749 38.462 0.00 0.00 41.67 2.01
3939 5398 6.150307 TGCGTCCACACATAAATCATTTTACT 59.850 34.615 0.00 0.00 30.33 2.24
3940 5399 6.468956 GCGTCCACACATAAATCATTTTACTG 59.531 38.462 0.00 0.00 30.33 2.74
3941 5400 7.625395 GCGTCCACACATAAATCATTTTACTGA 60.625 37.037 0.00 0.00 30.33 3.41
3942 5401 8.233868 CGTCCACACATAAATCATTTTACTGAA 58.766 33.333 0.00 0.00 30.33 3.02
3943 5402 9.906660 GTCCACACATAAATCATTTTACTGAAA 57.093 29.630 0.00 0.00 30.33 2.69
3956 5415 9.619316 TCATTTTACTGAAAAATCATACCGTTG 57.381 29.630 0.00 0.00 44.27 4.10
3957 5416 9.619316 CATTTTACTGAAAAATCATACCGTTGA 57.381 29.630 0.00 0.00 44.27 3.18
3961 5420 7.924103 ACTGAAAAATCATACCGTTGAAAAC 57.076 32.000 0.00 0.00 45.31 2.43
3962 5421 7.712797 ACTGAAAAATCATACCGTTGAAAACT 58.287 30.769 0.00 0.00 46.99 2.66
3963 5422 8.194769 ACTGAAAAATCATACCGTTGAAAACTT 58.805 29.630 0.00 0.00 46.99 2.66
3964 5423 8.568732 TGAAAAATCATACCGTTGAAAACTTC 57.431 30.769 0.00 0.00 46.99 3.01
3965 5424 8.410141 TGAAAAATCATACCGTTGAAAACTTCT 58.590 29.630 0.00 0.00 46.99 2.85
3966 5425 9.244799 GAAAAATCATACCGTTGAAAACTTCTT 57.755 29.630 0.00 0.00 46.99 2.52
3967 5426 9.594478 AAAAATCATACCGTTGAAAACTTCTTT 57.406 25.926 0.00 0.00 46.99 2.52
3968 5427 8.797266 AAATCATACCGTTGAAAACTTCTTTC 57.203 30.769 0.00 0.00 46.99 2.62
3969 5428 5.981174 TCATACCGTTGAAAACTTCTTTCG 58.019 37.500 0.00 0.00 46.99 3.46
3970 5429 5.754406 TCATACCGTTGAAAACTTCTTTCGA 59.246 36.000 0.00 0.00 46.99 3.71
3971 5430 4.950434 ACCGTTGAAAACTTCTTTCGAA 57.050 36.364 0.00 0.00 46.99 3.71
3972 5431 5.494632 ACCGTTGAAAACTTCTTTCGAAT 57.505 34.783 0.00 0.00 46.99 3.34
3973 5432 6.607735 ACCGTTGAAAACTTCTTTCGAATA 57.392 33.333 0.00 0.00 46.99 1.75
3974 5433 6.424683 ACCGTTGAAAACTTCTTTCGAATAC 58.575 36.000 0.00 0.00 46.99 1.89
3975 5434 5.558888 CCGTTGAAAACTTCTTTCGAATACG 59.441 40.000 0.00 0.00 46.99 3.06
3976 5435 6.349426 CGTTGAAAACTTCTTTCGAATACGA 58.651 36.000 0.00 0.00 46.99 3.43
3992 5451 8.697846 TCGAATACGAATTCAAAGTTATCTGT 57.302 30.769 6.22 0.00 45.74 3.41
3993 5452 8.592155 TCGAATACGAATTCAAAGTTATCTGTG 58.408 33.333 6.22 0.00 45.74 3.66
3994 5453 8.592155 CGAATACGAATTCAAAGTTATCTGTGA 58.408 33.333 6.22 0.00 41.44 3.58
3997 5456 6.546395 ACGAATTCAAAGTTATCTGTGATGC 58.454 36.000 6.22 0.00 37.71 3.91
3998 5457 6.372659 ACGAATTCAAAGTTATCTGTGATGCT 59.627 34.615 6.22 0.00 37.71 3.79
3999 5458 6.904011 CGAATTCAAAGTTATCTGTGATGCTC 59.096 38.462 6.22 0.00 37.71 4.26
4000 5459 6.690194 ATTCAAAGTTATCTGTGATGCTCC 57.310 37.500 0.00 0.00 37.71 4.70
4001 5460 4.517285 TCAAAGTTATCTGTGATGCTCCC 58.483 43.478 0.00 0.00 33.44 4.30
4002 5461 2.898729 AGTTATCTGTGATGCTCCCG 57.101 50.000 0.00 0.00 0.00 5.14
4003 5462 1.202580 AGTTATCTGTGATGCTCCCGC 60.203 52.381 0.00 0.00 0.00 6.13
4004 5463 0.106708 TTATCTGTGATGCTCCCGCC 59.893 55.000 0.00 0.00 34.43 6.13
4005 5464 2.087462 TATCTGTGATGCTCCCGCCG 62.087 60.000 0.00 0.00 34.43 6.46
4009 5468 4.488136 TGATGCTCCCGCCGCAAT 62.488 61.111 0.00 0.00 41.26 3.56
4010 5469 3.654020 GATGCTCCCGCCGCAATC 61.654 66.667 0.00 0.00 41.26 2.67
4019 5478 3.825611 GCCGCAATCGCCCATGTT 61.826 61.111 0.00 0.00 33.11 2.71
4020 5479 2.102749 CCGCAATCGCCCATGTTG 59.897 61.111 0.00 0.00 33.11 3.33
4021 5480 2.102749 CGCAATCGCCCATGTTGG 59.897 61.111 0.00 0.00 37.25 3.77
4022 5481 2.699768 CGCAATCGCCCATGTTGGT 61.700 57.895 0.00 0.00 35.17 3.67
4023 5482 1.591183 GCAATCGCCCATGTTGGTT 59.409 52.632 0.00 0.00 35.17 3.67
4024 5483 0.814457 GCAATCGCCCATGTTGGTTA 59.186 50.000 0.00 0.00 35.17 2.85
4025 5484 1.203523 GCAATCGCCCATGTTGGTTAA 59.796 47.619 0.00 0.00 35.17 2.01
4026 5485 2.353208 GCAATCGCCCATGTTGGTTAAA 60.353 45.455 0.00 0.00 35.17 1.52
4027 5486 3.678529 GCAATCGCCCATGTTGGTTAAAT 60.679 43.478 0.00 0.00 35.17 1.40
4028 5487 4.502962 CAATCGCCCATGTTGGTTAAATT 58.497 39.130 0.00 0.00 35.17 1.82
4029 5488 4.817318 ATCGCCCATGTTGGTTAAATTT 57.183 36.364 0.00 0.00 35.17 1.82
4030 5489 5.923733 ATCGCCCATGTTGGTTAAATTTA 57.076 34.783 0.00 0.00 35.17 1.40
4031 5490 5.923733 TCGCCCATGTTGGTTAAATTTAT 57.076 34.783 0.00 0.00 35.17 1.40
4032 5491 5.655488 TCGCCCATGTTGGTTAAATTTATG 58.345 37.500 0.00 0.00 35.17 1.90
4033 5492 4.808364 CGCCCATGTTGGTTAAATTTATGG 59.192 41.667 0.00 3.07 35.17 2.74
4034 5493 5.625656 CGCCCATGTTGGTTAAATTTATGGT 60.626 40.000 11.23 0.00 35.17 3.55
4035 5494 5.815222 GCCCATGTTGGTTAAATTTATGGTC 59.185 40.000 11.23 0.00 35.17 4.02
4036 5495 6.575254 GCCCATGTTGGTTAAATTTATGGTCA 60.575 38.462 11.23 4.14 35.17 4.02
4037 5496 7.390027 CCCATGTTGGTTAAATTTATGGTCAA 58.610 34.615 11.23 6.22 35.17 3.18
4038 5497 7.880195 CCCATGTTGGTTAAATTTATGGTCAAA 59.120 33.333 11.23 0.00 35.17 2.69
4039 5498 8.934825 CCATGTTGGTTAAATTTATGGTCAAAG 58.065 33.333 0.00 0.00 31.35 2.77
4040 5499 9.487790 CATGTTGGTTAAATTTATGGTCAAAGT 57.512 29.630 0.00 0.00 0.00 2.66
4056 5515 8.754991 TGGTCAAAGTTAAATCTAGAAAACCA 57.245 30.769 0.00 0.00 0.00 3.67
4057 5516 9.362151 TGGTCAAAGTTAAATCTAGAAAACCAT 57.638 29.630 0.00 0.00 0.00 3.55
4058 5517 9.626045 GGTCAAAGTTAAATCTAGAAAACCATG 57.374 33.333 0.00 4.81 0.00 3.66
4059 5518 9.626045 GTCAAAGTTAAATCTAGAAAACCATGG 57.374 33.333 11.19 11.19 0.00 3.66
4060 5519 8.802267 TCAAAGTTAAATCTAGAAAACCATGGG 58.198 33.333 18.09 0.00 0.00 4.00
4061 5520 6.775594 AGTTAAATCTAGAAAACCATGGGC 57.224 37.500 18.09 2.23 0.00 5.36
4073 5532 2.196595 ACCATGGGCACACTACACTAT 58.803 47.619 18.09 0.00 0.00 2.12
4074 5533 2.092968 ACCATGGGCACACTACACTATG 60.093 50.000 18.09 0.00 0.00 2.23
4075 5534 2.170397 CCATGGGCACACTACACTATGA 59.830 50.000 2.85 0.00 0.00 2.15
4076 5535 3.370421 CCATGGGCACACTACACTATGAA 60.370 47.826 2.85 0.00 0.00 2.57
4079 5538 4.323417 TGGGCACACTACACTATGAAAAG 58.677 43.478 0.00 0.00 0.00 2.27
4156 5639 6.393990 TCAGAACAGAGCTTAAATCAGAGAC 58.606 40.000 0.00 0.00 0.00 3.36
4203 5686 8.012957 AGGAACTCGAGTGATATACAGATTTT 57.987 34.615 20.85 0.00 0.00 1.82
4336 5819 0.734253 ATGAGTGTCGAAGCGCAGAC 60.734 55.000 11.47 16.52 37.85 3.51
4337 5820 2.049063 AGTGTCGAAGCGCAGACC 60.049 61.111 21.84 15.22 36.61 3.85
4392 5875 2.933260 GTCCTCTTCCTCGCAGAATTTC 59.067 50.000 0.00 0.00 34.09 2.17
4406 5889 5.612865 GCAGAATTTCGAGTACTTCTTGTG 58.387 41.667 0.00 0.00 0.00 3.33
4468 5951 3.755526 TTGATGATCCAGCCGCCCG 62.756 63.158 0.00 0.00 0.00 6.13
4558 6041 5.195940 TCAATCCTTGACAATGGATTCCTC 58.804 41.667 20.22 0.00 46.61 3.71
4559 6042 3.652057 TCCTTGACAATGGATTCCTCC 57.348 47.619 3.95 0.00 42.45 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 6.767456 AGATGATTGTGTTAGGATGATCTCC 58.233 40.000 0.00 0.00 45.33 3.71
8 9 6.873076 GGAGATGATTGTGTTAGGATGATCTC 59.127 42.308 0.00 0.00 38.79 2.75
9 10 6.239829 GGGAGATGATTGTGTTAGGATGATCT 60.240 42.308 0.00 0.00 0.00 2.75
10 11 5.936956 GGGAGATGATTGTGTTAGGATGATC 59.063 44.000 0.00 0.00 0.00 2.92
11 12 5.370584 TGGGAGATGATTGTGTTAGGATGAT 59.629 40.000 0.00 0.00 0.00 2.45
12 13 4.721274 TGGGAGATGATTGTGTTAGGATGA 59.279 41.667 0.00 0.00 0.00 2.92
13 14 5.039920 TGGGAGATGATTGTGTTAGGATG 57.960 43.478 0.00 0.00 0.00 3.51
14 15 5.715439 TTGGGAGATGATTGTGTTAGGAT 57.285 39.130 0.00 0.00 0.00 3.24
15 16 5.250543 TCTTTGGGAGATGATTGTGTTAGGA 59.749 40.000 0.00 0.00 0.00 2.94
16 17 5.500234 TCTTTGGGAGATGATTGTGTTAGG 58.500 41.667 0.00 0.00 0.00 2.69
17 18 6.176183 ACTCTTTGGGAGATGATTGTGTTAG 58.824 40.000 0.00 0.00 44.45 2.34
18 19 6.126863 ACTCTTTGGGAGATGATTGTGTTA 57.873 37.500 0.00 0.00 44.45 2.41
19 20 4.990526 ACTCTTTGGGAGATGATTGTGTT 58.009 39.130 0.00 0.00 44.45 3.32
20 21 4.647564 ACTCTTTGGGAGATGATTGTGT 57.352 40.909 0.00 0.00 44.45 3.72
21 22 4.574013 GCTACTCTTTGGGAGATGATTGTG 59.426 45.833 0.00 0.00 44.45 3.33
22 23 4.225942 TGCTACTCTTTGGGAGATGATTGT 59.774 41.667 0.00 0.00 44.45 2.71
42 43 3.205056 TGACCCATATCCAGGAATTTGCT 59.795 43.478 0.00 0.00 0.00 3.91
53 54 3.433740 GGGACTCACTTTGACCCATATCC 60.434 52.174 0.00 0.00 38.84 2.59
77 78 4.391830 TGGATCAGTCAAATAACACTTCGC 59.608 41.667 0.00 0.00 0.00 4.70
79 80 7.389053 ACTTCTGGATCAGTCAAATAACACTTC 59.611 37.037 0.00 0.00 32.61 3.01
82 83 7.041098 ACAACTTCTGGATCAGTCAAATAACAC 60.041 37.037 0.00 0.00 32.61 3.32
88 89 5.192927 ACAACAACTTCTGGATCAGTCAAA 58.807 37.500 0.00 0.00 32.61 2.69
101 103 2.618709 CAGGACCCTTGACAACAACTTC 59.381 50.000 0.00 0.00 32.27 3.01
118 120 0.107831 GGTGTGTGTGGTTAGCAGGA 59.892 55.000 0.00 0.00 0.00 3.86
135 137 7.660030 TTTTTGAAATCTCCAGAAAGAAGGT 57.340 32.000 0.00 0.00 0.00 3.50
164 166 2.573340 CCCAAAGACATTGCGCCC 59.427 61.111 4.18 0.00 37.73 6.13
212 214 1.063469 CGGCCACATCGGTGTAAATTC 59.937 52.381 0.00 0.00 43.71 2.17
224 249 3.572196 CTTTTTGCGGCGGCCACAT 62.572 57.895 20.71 0.00 38.85 3.21
229 254 0.388520 AAAGATCTTTTTGCGGCGGC 60.389 50.000 15.11 9.68 40.52 6.53
232 257 1.978782 CGACAAAGATCTTTTTGCGGC 59.021 47.619 18.16 8.38 40.80 6.53
247 272 1.511850 CCATGTTCTGACAGCGACAA 58.488 50.000 13.25 0.00 39.58 3.18
253 278 2.821378 TGGAAATGCCATGTTCTGACAG 59.179 45.455 0.00 0.00 43.33 3.51
300 325 1.965754 GCCTCTGATTCGACTGGGCT 61.966 60.000 0.00 0.00 35.73 5.19
312 337 2.166459 CCTTCGACTATGTTGCCTCTGA 59.834 50.000 0.00 0.00 0.00 3.27
317 342 1.429148 CGCCCTTCGACTATGTTGCC 61.429 60.000 0.00 0.00 41.67 4.52
318 343 1.429148 CCGCCCTTCGACTATGTTGC 61.429 60.000 0.00 0.00 41.67 4.17
323 348 3.912907 CGGCCGCCCTTCGACTAT 61.913 66.667 14.67 0.00 41.67 2.12
336 361 0.678048 ATCTGGAGAAGTTTGCGGCC 60.678 55.000 0.00 0.00 0.00 6.13
340 365 2.294233 TGCACAATCTGGAGAAGTTTGC 59.706 45.455 0.00 0.00 38.61 3.68
353 378 0.033366 GGGTTTGGGTGTGCACAATC 59.967 55.000 23.59 16.80 37.91 2.67
376 401 5.104485 ACCCTGTCTGTAAACCCAAGATATC 60.104 44.000 0.00 0.00 0.00 1.63
378 403 4.172807 ACCCTGTCTGTAAACCCAAGATA 58.827 43.478 0.00 0.00 0.00 1.98
390 415 2.896685 CAAGAAGAGAGACCCTGTCTGT 59.103 50.000 0.69 0.00 43.53 3.41
391 416 2.896685 ACAAGAAGAGAGACCCTGTCTG 59.103 50.000 0.69 0.00 43.53 3.51
392 417 3.252554 ACAAGAAGAGAGACCCTGTCT 57.747 47.619 0.00 0.00 46.42 3.41
397 422 4.616373 CGTACTGAACAAGAAGAGAGACCC 60.616 50.000 0.00 0.00 0.00 4.46
478 503 5.869888 CCTAACAGTCTGCTTTCGTCTATTT 59.130 40.000 0.00 0.00 0.00 1.40
613 705 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
614 706 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
615 707 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
616 708 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
619 711 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
620 712 1.990563 AGCGACGAGTAATTTGGAACG 59.009 47.619 0.00 0.00 0.00 3.95
621 713 2.991190 TCAGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
622 714 3.306917 TCAGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
623 715 3.306917 TTCAGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
624 716 4.334443 CATTTCAGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
625 717 4.092821 TCCATTTCAGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
626 718 4.250464 TCCATTTCAGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
627 719 3.857052 TCCATTTCAGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
628 720 3.520290 TCCATTTCAGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
629 721 3.186909 CATCCATTTCAGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
630 722 2.165641 ACATCCATTTCAGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
631 723 1.066858 ACATCCATTTCAGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
632 724 1.645034 ACATCCATTTCAGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
633 725 2.951457 TACATCCATTTCAGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
634 726 3.384668 AGATACATCCATTTCAGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
635 727 5.773575 TCTAGATACATCCATTTCAGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
636 728 6.040955 AGTTCTAGATACATCCATTTCAGCGA 59.959 38.462 0.00 0.00 0.00 4.93
637 729 6.219473 AGTTCTAGATACATCCATTTCAGCG 58.781 40.000 0.00 0.00 0.00 5.18
638 730 9.547753 TTTAGTTCTAGATACATCCATTTCAGC 57.452 33.333 0.00 0.00 0.00 4.26
664 756 8.191446 GCACGTATGGATGTATCTAGATGTATT 58.809 37.037 15.79 0.00 29.44 1.89
665 757 7.467403 CGCACGTATGGATGTATCTAGATGTAT 60.467 40.741 15.79 9.11 29.44 2.29
666 758 6.183360 CGCACGTATGGATGTATCTAGATGTA 60.183 42.308 15.79 4.44 29.44 2.29
667 759 5.392057 CGCACGTATGGATGTATCTAGATGT 60.392 44.000 15.79 1.25 30.36 3.06
668 760 5.030936 CGCACGTATGGATGTATCTAGATG 58.969 45.833 15.79 0.00 0.00 2.90
669 761 4.941873 TCGCACGTATGGATGTATCTAGAT 59.058 41.667 10.73 10.73 0.00 1.98
670 762 4.153655 GTCGCACGTATGGATGTATCTAGA 59.846 45.833 0.00 0.00 0.00 2.43
671 763 4.083484 TGTCGCACGTATGGATGTATCTAG 60.083 45.833 0.00 0.00 0.00 2.43
672 764 3.816523 TGTCGCACGTATGGATGTATCTA 59.183 43.478 0.00 0.00 0.00 1.98
673 765 2.621526 TGTCGCACGTATGGATGTATCT 59.378 45.455 0.00 0.00 0.00 1.98
674 766 3.007979 TGTCGCACGTATGGATGTATC 57.992 47.619 0.00 0.00 0.00 2.24
675 767 3.181479 ACTTGTCGCACGTATGGATGTAT 60.181 43.478 0.00 0.00 0.00 2.29
676 768 2.164827 ACTTGTCGCACGTATGGATGTA 59.835 45.455 0.00 0.00 0.00 2.29
677 769 1.067142 ACTTGTCGCACGTATGGATGT 60.067 47.619 0.00 0.00 0.00 3.06
678 770 1.640428 ACTTGTCGCACGTATGGATG 58.360 50.000 0.00 0.00 0.00 3.51
679 771 2.426024 ACTACTTGTCGCACGTATGGAT 59.574 45.455 0.00 0.00 0.00 3.41
680 772 1.814394 ACTACTTGTCGCACGTATGGA 59.186 47.619 0.00 0.00 0.00 3.41
681 773 2.273370 ACTACTTGTCGCACGTATGG 57.727 50.000 0.00 0.00 0.00 2.74
682 774 2.275510 CGAACTACTTGTCGCACGTATG 59.724 50.000 0.00 0.00 0.00 2.39
683 775 2.512885 CGAACTACTTGTCGCACGTAT 58.487 47.619 0.00 0.00 0.00 3.06
684 776 1.400113 CCGAACTACTTGTCGCACGTA 60.400 52.381 0.00 0.00 0.00 3.57
685 777 0.662374 CCGAACTACTTGTCGCACGT 60.662 55.000 0.00 0.00 0.00 4.49
686 778 0.386352 TCCGAACTACTTGTCGCACG 60.386 55.000 0.00 0.00 0.00 5.34
687 779 1.454653 GTTCCGAACTACTTGTCGCAC 59.545 52.381 3.88 0.00 0.00 5.34
688 780 1.774639 GTTCCGAACTACTTGTCGCA 58.225 50.000 3.88 0.00 0.00 5.10
689 781 0.706729 CGTTCCGAACTACTTGTCGC 59.293 55.000 9.55 0.00 0.00 5.19
690 782 1.069022 TCCGTTCCGAACTACTTGTCG 60.069 52.381 9.55 0.00 0.00 4.35
691 783 2.593257 CTCCGTTCCGAACTACTTGTC 58.407 52.381 9.55 0.00 0.00 3.18
692 784 1.271656 CCTCCGTTCCGAACTACTTGT 59.728 52.381 9.55 0.00 0.00 3.16
693 785 1.403780 CCCTCCGTTCCGAACTACTTG 60.404 57.143 9.55 0.00 0.00 3.16
694 786 0.893447 CCCTCCGTTCCGAACTACTT 59.107 55.000 9.55 0.00 0.00 2.24
695 787 0.038744 TCCCTCCGTTCCGAACTACT 59.961 55.000 9.55 0.00 0.00 2.57
696 788 0.455005 CTCCCTCCGTTCCGAACTAC 59.545 60.000 9.55 0.00 0.00 2.73
697 789 0.038744 ACTCCCTCCGTTCCGAACTA 59.961 55.000 9.55 0.00 0.00 2.24
698 790 0.038744 TACTCCCTCCGTTCCGAACT 59.961 55.000 9.55 0.00 0.00 3.01
699 791 0.455005 CTACTCCCTCCGTTCCGAAC 59.545 60.000 0.76 0.76 0.00 3.95
700 792 0.038744 ACTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
701 793 0.911769 TACTACTCCCTCCGTTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
702 794 1.607628 CATACTACTCCCTCCGTTCCG 59.392 57.143 0.00 0.00 0.00 4.30
703 795 1.962100 CCATACTACTCCCTCCGTTCC 59.038 57.143 0.00 0.00 0.00 3.62
704 796 2.941480 TCCATACTACTCCCTCCGTTC 58.059 52.381 0.00 0.00 0.00 3.95
705 797 3.297736 CTTCCATACTACTCCCTCCGTT 58.702 50.000 0.00 0.00 0.00 4.44
706 798 2.946785 CTTCCATACTACTCCCTCCGT 58.053 52.381 0.00 0.00 0.00 4.69
707 799 1.614413 GCTTCCATACTACTCCCTCCG 59.386 57.143 0.00 0.00 0.00 4.63
708 800 2.965562 AGCTTCCATACTACTCCCTCC 58.034 52.381 0.00 0.00 0.00 4.30
709 801 3.502979 CGTAGCTTCCATACTACTCCCTC 59.497 52.174 0.00 0.00 37.26 4.30
710 802 3.488363 CGTAGCTTCCATACTACTCCCT 58.512 50.000 0.00 0.00 37.26 4.20
711 803 2.557490 CCGTAGCTTCCATACTACTCCC 59.443 54.545 0.00 0.00 37.26 4.30
712 804 2.030096 GCCGTAGCTTCCATACTACTCC 60.030 54.545 0.00 0.00 37.26 3.85
713 805 2.350580 CGCCGTAGCTTCCATACTACTC 60.351 54.545 0.00 0.00 37.26 2.59
714 806 1.607628 CGCCGTAGCTTCCATACTACT 59.392 52.381 0.00 0.00 37.26 2.57
715 807 1.335689 CCGCCGTAGCTTCCATACTAC 60.336 57.143 0.00 0.00 36.60 2.73
716 808 0.956633 CCGCCGTAGCTTCCATACTA 59.043 55.000 0.00 0.00 36.60 1.82
717 809 0.754217 TCCGCCGTAGCTTCCATACT 60.754 55.000 0.00 0.00 36.60 2.12
730 822 4.084888 GGCGAACTGTTTCCGCCG 62.085 66.667 23.83 11.06 39.74 6.46
761 860 5.246981 TCAACTCAATTCTCCTCCACATT 57.753 39.130 0.00 0.00 0.00 2.71
777 876 8.337532 CCATTTCCTCAAAAACAAAATCAACTC 58.662 33.333 0.00 0.00 0.00 3.01
778 877 8.046107 TCCATTTCCTCAAAAACAAAATCAACT 58.954 29.630 0.00 0.00 0.00 3.16
782 881 9.882996 GAAATCCATTTCCTCAAAAACAAAATC 57.117 29.630 1.11 0.00 40.10 2.17
788 890 9.208022 CCTAAAGAAATCCATTTCCTCAAAAAC 57.792 33.333 8.18 0.00 45.52 2.43
818 921 5.712152 ACTCACAATCCATTTCCTCAAAC 57.288 39.130 0.00 0.00 0.00 2.93
913 1024 0.096976 CAAGCCCGCTCGTTACATTG 59.903 55.000 0.00 0.00 0.00 2.82
983 1094 1.671379 GTCTCGCAACTTGGGGGTC 60.671 63.158 5.66 0.00 32.00 4.46
1018 1129 4.058817 CCTCTACTGTCTCGCAACTTTTT 58.941 43.478 0.00 0.00 0.00 1.94
1019 1130 3.555168 CCCTCTACTGTCTCGCAACTTTT 60.555 47.826 0.00 0.00 0.00 2.27
1020 1131 2.028930 CCCTCTACTGTCTCGCAACTTT 60.029 50.000 0.00 0.00 0.00 2.66
1035 1146 2.682494 ACCGCCTTTCGCCCTCTA 60.682 61.111 0.00 0.00 36.73 2.43
1189 1320 3.777925 CACGGCGCGGAAACAGAG 61.778 66.667 22.76 0.00 0.00 3.35
1263 1404 2.496817 CCTCTTCTTCCGCTCCCG 59.503 66.667 0.00 0.00 0.00 5.14
1345 1486 1.190643 CTTCTTCTTCCTCCTCCGCT 58.809 55.000 0.00 0.00 0.00 5.52
1494 1637 3.939740 ATTGCCCATTCTCTAGCTCAA 57.060 42.857 0.00 0.00 0.00 3.02
1521 1664 3.390135 TGTGAAGATTGAACGGTCACTC 58.610 45.455 12.58 12.58 39.45 3.51
1528 1671 4.214437 GTGAAGCTTGTGAAGATTGAACG 58.786 43.478 2.10 0.00 37.23 3.95
1529 1672 4.276926 AGGTGAAGCTTGTGAAGATTGAAC 59.723 41.667 2.10 0.00 37.23 3.18
1553 1696 1.767681 GGCCTGATCCTCTGTTCTCAT 59.232 52.381 0.00 0.00 0.00 2.90
1560 1703 0.693767 AAGGAGGGCCTGATCCTCTG 60.694 60.000 12.95 0.00 46.28 3.35
1561 1704 0.045469 AAAGGAGGGCCTGATCCTCT 59.955 55.000 12.95 8.33 46.28 3.69
1567 1710 1.451449 TGGTTTAAAGGAGGGCCTGA 58.549 50.000 12.95 0.00 46.28 3.86
1570 1713 2.496070 GTTCATGGTTTAAAGGAGGGCC 59.504 50.000 0.00 0.00 0.00 5.80
1571 1714 3.056821 GTGTTCATGGTTTAAAGGAGGGC 60.057 47.826 0.00 0.00 0.00 5.19
1575 1718 5.835819 TGGATTGTGTTCATGGTTTAAAGGA 59.164 36.000 0.00 0.00 0.00 3.36
1582 1725 4.834496 AGTTGATGGATTGTGTTCATGGTT 59.166 37.500 0.00 0.00 0.00 3.67
1593 1736 1.134280 AGAGGCCGAGTTGATGGATTG 60.134 52.381 0.00 0.00 0.00 2.67
1631 1774 1.752753 CTTCTGCTAGCGTCGATGAG 58.247 55.000 9.31 0.00 0.00 2.90
1632 1775 0.248661 GCTTCTGCTAGCGTCGATGA 60.249 55.000 9.31 0.00 36.03 2.92
1636 1779 2.161486 GGTGCTTCTGCTAGCGTCG 61.161 63.158 10.77 0.96 44.18 5.12
1639 1782 1.639298 GGTTGGTGCTTCTGCTAGCG 61.639 60.000 10.77 5.22 44.18 4.26
1680 1866 8.306761 ACCTTCTTTTGTTCAGGCATAAATAAG 58.693 33.333 0.00 0.00 0.00 1.73
1695 1881 4.536765 ACATCAACCTCACCTTCTTTTGT 58.463 39.130 0.00 0.00 0.00 2.83
1700 1886 2.304180 CAGGACATCAACCTCACCTTCT 59.696 50.000 0.00 0.00 35.35 2.85
1702 1888 2.039084 GTCAGGACATCAACCTCACCTT 59.961 50.000 0.00 0.00 35.35 3.50
1713 1899 2.300152 TGACTTGTGAGGTCAGGACATC 59.700 50.000 7.11 7.11 41.97 3.06
1714 1900 2.037772 GTGACTTGTGAGGTCAGGACAT 59.962 50.000 1.41 0.00 43.17 3.06
1715 1901 1.412710 GTGACTTGTGAGGTCAGGACA 59.587 52.381 1.41 0.00 43.17 4.02
1716 1902 1.412710 TGTGACTTGTGAGGTCAGGAC 59.587 52.381 0.00 0.00 43.17 3.85
1717 1903 1.788229 TGTGACTTGTGAGGTCAGGA 58.212 50.000 0.00 0.00 43.17 3.86
1728 1914 6.529125 GCCAATAATCAATCACTTGTGACTTG 59.471 38.462 5.53 11.10 33.87 3.16
1729 1915 6.350445 GGCCAATAATCAATCACTTGTGACTT 60.350 38.462 5.53 0.13 33.87 3.01
1730 1916 5.126061 GGCCAATAATCAATCACTTGTGACT 59.874 40.000 5.53 0.00 33.87 3.41
1731 1917 5.343249 GGCCAATAATCAATCACTTGTGAC 58.657 41.667 5.53 0.00 33.87 3.67
1732 1918 4.402155 GGGCCAATAATCAATCACTTGTGA 59.598 41.667 4.39 5.89 33.87 3.58
1733 1919 4.403432 AGGGCCAATAATCAATCACTTGTG 59.597 41.667 6.18 0.00 33.87 3.33
1734 1920 4.613437 AGGGCCAATAATCAATCACTTGT 58.387 39.130 6.18 0.00 33.87 3.16
1737 1923 4.166725 TCAGAGGGCCAATAATCAATCACT 59.833 41.667 6.18 0.00 0.00 3.41
1760 1946 0.251922 ACCACCATTGCTTGCCTGAT 60.252 50.000 0.00 0.00 0.00 2.90
1832 2020 5.337169 GCCAAAATTATGTTGCTTACTGGGA 60.337 40.000 0.00 0.00 0.00 4.37
1835 2023 6.401367 GCAAGCCAAAATTATGTTGCTTACTG 60.401 38.462 0.00 0.00 37.80 2.74
1838 2026 4.934602 GGCAAGCCAAAATTATGTTGCTTA 59.065 37.500 6.14 0.00 40.11 3.09
1965 3070 2.375014 AGTGGTCGGGATTGGTTTTT 57.625 45.000 0.00 0.00 0.00 1.94
1966 3071 2.375014 AAGTGGTCGGGATTGGTTTT 57.625 45.000 0.00 0.00 0.00 2.43
1967 3072 2.375014 AAAGTGGTCGGGATTGGTTT 57.625 45.000 0.00 0.00 0.00 3.27
2030 3138 1.608590 CTCATGCTGTTCGGTTTGGTT 59.391 47.619 0.00 0.00 0.00 3.67
2032 3140 0.523072 CCTCATGCTGTTCGGTTTGG 59.477 55.000 0.00 0.00 0.00 3.28
2083 3191 2.089600 TTTTGGTTTGGTAGGTGGGG 57.910 50.000 0.00 0.00 0.00 4.96
2091 3199 6.147000 GCAATTCACGATATTTTTGGTTTGGT 59.853 34.615 0.00 0.00 0.00 3.67
2132 3240 6.438425 ACTTGCTATTGAAATTGGTGGAGAAT 59.562 34.615 0.00 0.00 0.00 2.40
2203 3321 6.684131 CACGTACACATCATCATCAAATGAAC 59.316 38.462 0.00 0.00 43.50 3.18
2232 3350 7.246674 TCTCTGTCAAGACAAACAAATACAC 57.753 36.000 4.29 0.00 41.33 2.90
2300 3418 2.350498 CACAACGTCCTTGTCTTTTCGT 59.650 45.455 0.00 0.00 41.50 3.85
2315 3433 1.787155 CCGTCAAGAGAACTCACAACG 59.213 52.381 4.64 9.38 33.05 4.10
2366 3488 9.868277 GGTCCAGAACTCTTATATTGATCATAG 57.132 37.037 0.00 0.00 0.00 2.23
2373 3495 8.831550 GCTAAAAGGTCCAGAACTCTTATATTG 58.168 37.037 0.00 0.00 0.00 1.90
2377 3499 6.442244 AGAGCTAAAAGGTCCAGAACTCTTAT 59.558 38.462 2.65 0.00 43.38 1.73
2378 3500 5.780793 AGAGCTAAAAGGTCCAGAACTCTTA 59.219 40.000 2.65 0.00 43.38 2.10
2379 3501 4.595350 AGAGCTAAAAGGTCCAGAACTCTT 59.405 41.667 2.65 0.00 43.38 2.85
2406 3528 4.387256 TGCAACAACAACAAAAAGTGCTAC 59.613 37.500 0.00 0.00 0.00 3.58
2418 3540 3.502191 TCAGACCTTTGCAACAACAAC 57.498 42.857 0.00 0.00 0.00 3.32
2420 3542 7.701539 ATATTATCAGACCTTTGCAACAACA 57.298 32.000 0.00 0.00 0.00 3.33
2421 3543 8.345565 CCTATATTATCAGACCTTTGCAACAAC 58.654 37.037 0.00 0.00 0.00 3.32
2422 3544 8.271458 TCCTATATTATCAGACCTTTGCAACAA 58.729 33.333 0.00 0.00 0.00 2.83
2423 3545 7.715249 GTCCTATATTATCAGACCTTTGCAACA 59.285 37.037 0.00 0.00 0.00 3.33
2424 3546 7.095607 CGTCCTATATTATCAGACCTTTGCAAC 60.096 40.741 0.00 0.00 0.00 4.17
2444 3591 0.031917 TAGGGCCATTGTCCGTCCTA 60.032 55.000 6.18 0.00 42.85 2.94
2445 3592 0.912487 TTAGGGCCATTGTCCGTCCT 60.912 55.000 6.18 0.00 42.85 3.85
2517 3664 4.938226 ACTTAAGCCTACAAGATGTGCTTC 59.062 41.667 10.24 0.00 38.42 3.86
2520 3667 6.351327 CTTACTTAAGCCTACAAGATGTGC 57.649 41.667 1.29 0.00 0.00 4.57
2539 3686 7.862873 GCATGGATTCAAAGGTAATTAGCTTAC 59.137 37.037 25.77 15.70 42.60 2.34
2551 3698 3.328505 GTTGGTTGCATGGATTCAAAGG 58.671 45.455 0.00 0.00 0.00 3.11
2555 3702 1.894466 CAGGTTGGTTGCATGGATTCA 59.106 47.619 0.00 0.00 0.00 2.57
2559 3706 1.907807 GCCAGGTTGGTTGCATGGA 60.908 57.895 4.42 0.00 39.89 3.41
2582 3741 4.218417 CCCTTAAAAACATGGTCTGGACAG 59.782 45.833 0.00 0.00 0.00 3.51
2589 3748 5.303333 TCAAAGACCCCTTAAAAACATGGTC 59.697 40.000 0.00 0.00 42.00 4.02
2605 3764 6.038271 TCAGTTTTAAGAGTGCTTCAAAGACC 59.962 38.462 0.00 0.00 35.56 3.85
2624 3783 1.704641 GAAAGGGGCAGGTTCAGTTT 58.295 50.000 0.00 0.00 0.00 2.66
2653 3812 9.538508 GAAATTTGCAATATCTTAGCCTGAAAT 57.461 29.630 0.00 0.00 0.00 2.17
2671 3830 7.558435 CAGTTATCACACTGAAGAAATTTGC 57.442 36.000 0.00 0.00 46.29 3.68
2684 3844 6.536582 ACAGACTTGCATATCAGTTATCACAC 59.463 38.462 0.00 0.00 0.00 3.82
2688 3848 7.545362 ACAACAGACTTGCATATCAGTTATC 57.455 36.000 7.80 0.00 0.00 1.75
2697 3857 5.003160 AGCACAATACAACAGACTTGCATA 58.997 37.500 0.00 0.00 0.00 3.14
2718 3878 3.650647 TGGAACTCCATTGTCCAGC 57.349 52.632 0.00 0.00 42.01 4.85
2747 3907 7.659390 AGCCTTTAGATGTGAAATATAGTCTGC 59.341 37.037 0.00 0.00 0.00 4.26
2754 3915 9.007901 GCTATTCAGCCTTTAGATGTGAAATAT 57.992 33.333 0.00 0.00 42.37 1.28
2796 3957 9.941664 CCATCACTATTTTAGTTCAATGACATC 57.058 33.333 0.00 0.00 36.76 3.06
2797 3958 9.466497 ACCATCACTATTTTAGTTCAATGACAT 57.534 29.630 0.00 0.00 36.76 3.06
2851 4012 3.138468 AGGGGATAAGGCAATAACTGTCC 59.862 47.826 0.00 0.00 0.00 4.02
2852 4013 4.137543 CAGGGGATAAGGCAATAACTGTC 58.862 47.826 0.00 0.00 0.00 3.51
2869 4030 2.632512 ACAGGTGTAAAAATTGCAGGGG 59.367 45.455 0.00 0.00 0.00 4.79
2879 4040 8.472007 ACAATCCTTTCATTACAGGTGTAAAA 57.528 30.769 6.66 0.00 42.93 1.52
2884 4045 8.964476 ATACTACAATCCTTTCATTACAGGTG 57.036 34.615 0.00 0.00 0.00 4.00
2900 4061 7.787904 TCACTTCAGGGGTGTATATACTACAAT 59.212 37.037 13.89 0.00 36.25 2.71
2910 4071 4.104086 TCAAGATCACTTCAGGGGTGTAT 58.896 43.478 0.00 0.00 36.25 2.29
2915 4076 2.093235 GTCCTCAAGATCACTTCAGGGG 60.093 54.545 0.00 0.00 43.22 4.79
2924 4085 6.484288 ACACAAATTATGGTCCTCAAGATCA 58.516 36.000 0.00 0.00 40.82 2.92
2988 4149 9.601217 CCTACTACTACTTTTGCTGAATTACAT 57.399 33.333 0.00 0.00 0.00 2.29
3012 4182 3.564225 CCGCACTTCTTTCTTAACAACCT 59.436 43.478 0.00 0.00 0.00 3.50
3032 4202 4.518590 TCATTCCAAATACATATGGTGCCG 59.481 41.667 7.80 0.00 37.94 5.69
3033 4203 5.536161 AGTCATTCCAAATACATATGGTGCC 59.464 40.000 7.80 0.00 37.94 5.01
3050 4220 8.171840 GCAAGTTCAATCACTAACTAGTCATTC 58.828 37.037 0.00 0.00 34.91 2.67
3052 4222 7.390027 AGCAAGTTCAATCACTAACTAGTCAT 58.610 34.615 0.00 0.00 34.91 3.06
3053 4223 6.759272 AGCAAGTTCAATCACTAACTAGTCA 58.241 36.000 0.00 0.00 34.91 3.41
3054 4224 7.171678 ACAAGCAAGTTCAATCACTAACTAGTC 59.828 37.037 0.00 0.00 34.91 2.59
3057 4227 7.801716 AACAAGCAAGTTCAATCACTAACTA 57.198 32.000 0.00 0.00 34.91 2.24
3071 4273 2.225467 GCAGGAGAAGAACAAGCAAGT 58.775 47.619 0.00 0.00 0.00 3.16
3086 4288 2.639347 TCAGAACATGAGAAAGGCAGGA 59.361 45.455 0.00 0.00 32.77 3.86
3096 4298 3.538634 TGAGAGGCATCAGAACATGAG 57.461 47.619 0.00 0.00 42.53 2.90
3103 4305 3.276857 GCTGAAAATGAGAGGCATCAGA 58.723 45.455 0.00 0.00 34.52 3.27
3128 4330 6.707440 TTTCTTTGATGTCCTGTTTTAGCA 57.293 33.333 0.00 0.00 0.00 3.49
3183 4385 0.878523 TCAACCAGGTTGCGAACTCG 60.879 55.000 25.70 1.61 42.55 4.18
3189 4391 0.593128 CTTCCTTCAACCAGGTTGCG 59.407 55.000 25.70 18.18 42.55 4.85
3391 4593 2.766925 AAGGCACCCCAACTGCAGA 61.767 57.895 23.35 0.00 36.27 4.26
3400 4602 2.658422 CACAATGCAAGGCACCCC 59.342 61.111 0.00 0.00 43.04 4.95
3412 4614 1.588674 TCGTCAAGAAACCGCACAAT 58.411 45.000 0.00 0.00 0.00 2.71
3507 4720 2.753055 TGCTAAACACAGCGATACCA 57.247 45.000 0.00 0.00 44.88 3.25
3508 4721 3.621268 TCAATGCTAAACACAGCGATACC 59.379 43.478 0.00 0.00 44.88 2.73
3541 4754 3.380004 TCTTTTCACTGAACGTTGGCAAT 59.620 39.130 5.00 0.00 0.00 3.56
3585 4798 1.418637 GGTGGGGCTAATCACCGAATA 59.581 52.381 0.00 0.00 43.11 1.75
3586 4799 0.182775 GGTGGGGCTAATCACCGAAT 59.817 55.000 0.00 0.00 43.11 3.34
3587 4800 1.605453 GGTGGGGCTAATCACCGAA 59.395 57.895 0.00 0.00 43.11 4.30
3588 4801 3.316029 GGTGGGGCTAATCACCGA 58.684 61.111 0.00 0.00 43.11 4.69
3657 4895 7.550906 AGTCTTCAGTTTACAGCAAGATTATCC 59.449 37.037 0.00 0.00 0.00 2.59
3662 4900 6.767902 TGAAAGTCTTCAGTTTACAGCAAGAT 59.232 34.615 0.00 0.00 36.62 2.40
3682 4920 6.961554 GGCAGACTAATTCGTAACATTGAAAG 59.038 38.462 0.00 0.00 0.00 2.62
3688 5128 4.119442 ACGGCAGACTAATTCGTAACAT 57.881 40.909 0.00 0.00 32.03 2.71
3694 5134 4.356162 CGAAATACGGCAGACTAATTCG 57.644 45.455 0.00 0.00 38.46 3.34
3721 5179 1.993956 TTACATGCTGCCAAAGTGGT 58.006 45.000 0.00 0.00 40.46 4.16
3782 5240 2.698855 AGTGGCGATGCTGAAATACT 57.301 45.000 0.00 0.00 0.00 2.12
3810 5268 2.330216 ACTGCCTTAACAGACTGGACT 58.670 47.619 7.51 0.00 40.25 3.85
3829 5287 8.854614 AGGAATTTGCAATAGGATCAGTATAC 57.145 34.615 0.00 0.00 0.00 1.47
3870 5328 1.065418 AGTTTTCGCCCTGGTATCTGG 60.065 52.381 0.00 0.00 0.00 3.86
3875 5334 1.551883 GGAGTAGTTTTCGCCCTGGTA 59.448 52.381 0.00 0.00 0.00 3.25
3900 5359 4.127171 GTGGACGCACTACATTATGGAAT 58.873 43.478 0.00 0.00 0.00 3.01
3902 5361 2.498078 TGTGGACGCACTACATTATGGA 59.502 45.455 0.00 0.00 35.15 3.41
3910 5369 3.930229 TGATTTATGTGTGGACGCACTAC 59.070 43.478 15.95 3.69 39.39 2.73
3913 5372 4.355543 AATGATTTATGTGTGGACGCAC 57.644 40.909 8.95 8.95 39.39 5.34
3914 5373 5.384063 AAAATGATTTATGTGTGGACGCA 57.616 34.783 0.00 0.00 40.98 5.24
3915 5374 6.468956 CAGTAAAATGATTTATGTGTGGACGC 59.531 38.462 0.00 0.00 33.76 5.19
3916 5375 7.747888 TCAGTAAAATGATTTATGTGTGGACG 58.252 34.615 0.00 0.00 33.76 4.79
3917 5376 9.906660 TTTCAGTAAAATGATTTATGTGTGGAC 57.093 29.630 0.00 0.00 33.76 4.02
3930 5389 9.619316 CAACGGTATGATTTTTCAGTAAAATGA 57.381 29.630 2.67 0.00 44.46 2.57
3931 5390 9.619316 TCAACGGTATGATTTTTCAGTAAAATG 57.381 29.630 2.67 0.00 44.46 2.32
3935 5394 9.453325 GTTTTCAACGGTATGATTTTTCAGTAA 57.547 29.630 0.00 0.00 0.00 2.24
3936 5395 8.842280 AGTTTTCAACGGTATGATTTTTCAGTA 58.158 29.630 0.00 0.00 36.23 2.74
3937 5396 7.712797 AGTTTTCAACGGTATGATTTTTCAGT 58.287 30.769 0.00 0.00 36.23 3.41
3938 5397 8.574196 AAGTTTTCAACGGTATGATTTTTCAG 57.426 30.769 0.00 0.00 36.23 3.02
3939 5398 8.410141 AGAAGTTTTCAACGGTATGATTTTTCA 58.590 29.630 0.00 0.00 36.23 2.69
3940 5399 8.797266 AGAAGTTTTCAACGGTATGATTTTTC 57.203 30.769 0.00 0.00 36.23 2.29
3941 5400 9.594478 AAAGAAGTTTTCAACGGTATGATTTTT 57.406 25.926 0.00 0.00 36.23 1.94
3942 5401 9.244799 GAAAGAAGTTTTCAACGGTATGATTTT 57.755 29.630 0.00 0.00 36.23 1.82
3943 5402 7.589954 CGAAAGAAGTTTTCAACGGTATGATTT 59.410 33.333 0.00 0.00 36.23 2.17
3944 5403 7.041644 TCGAAAGAAGTTTTCAACGGTATGATT 60.042 33.333 0.00 0.00 37.03 2.57
3945 5404 6.425721 TCGAAAGAAGTTTTCAACGGTATGAT 59.574 34.615 0.00 0.00 37.03 2.45
3946 5405 5.754406 TCGAAAGAAGTTTTCAACGGTATGA 59.246 36.000 0.00 0.00 37.03 2.15
3947 5406 5.981174 TCGAAAGAAGTTTTCAACGGTATG 58.019 37.500 0.00 0.00 37.03 2.39
3948 5407 6.607735 TTCGAAAGAAGTTTTCAACGGTAT 57.392 33.333 0.00 0.00 46.92 2.73
3950 5409 4.950434 TTCGAAAGAAGTTTTCAACGGT 57.050 36.364 0.00 0.00 46.92 4.83
3967 5426 8.592155 CACAGATAACTTTGAATTCGTATTCGA 58.408 33.333 9.79 5.55 42.55 3.71
3968 5427 8.592155 TCACAGATAACTTTGAATTCGTATTCG 58.408 33.333 9.79 0.00 42.55 3.34
3971 5430 8.338259 GCATCACAGATAACTTTGAATTCGTAT 58.662 33.333 0.04 0.00 36.59 3.06
3972 5431 7.549134 AGCATCACAGATAACTTTGAATTCGTA 59.451 33.333 0.04 0.00 36.59 3.43
3973 5432 6.372659 AGCATCACAGATAACTTTGAATTCGT 59.627 34.615 0.04 0.00 36.59 3.85
3974 5433 6.779117 AGCATCACAGATAACTTTGAATTCG 58.221 36.000 0.04 0.00 36.59 3.34
3975 5434 7.192232 GGAGCATCACAGATAACTTTGAATTC 58.808 38.462 0.00 0.00 36.59 2.17
3976 5435 6.096001 GGGAGCATCACAGATAACTTTGAATT 59.904 38.462 0.00 0.00 39.41 2.17
3977 5436 5.591877 GGGAGCATCACAGATAACTTTGAAT 59.408 40.000 0.00 0.00 39.41 2.57
3978 5437 4.943705 GGGAGCATCACAGATAACTTTGAA 59.056 41.667 0.00 0.00 39.41 2.69
3979 5438 4.517285 GGGAGCATCACAGATAACTTTGA 58.483 43.478 0.00 0.00 39.41 2.69
3980 5439 3.310774 CGGGAGCATCACAGATAACTTTG 59.689 47.826 0.00 0.00 39.81 2.77
3981 5440 3.535561 CGGGAGCATCACAGATAACTTT 58.464 45.455 0.00 0.00 39.81 2.66
3982 5441 3.185246 CGGGAGCATCACAGATAACTT 57.815 47.619 0.00 0.00 39.81 2.66
3983 5442 2.898729 CGGGAGCATCACAGATAACT 57.101 50.000 0.00 0.00 39.81 2.24
4003 5462 2.102749 CAACATGGGCGATTGCGG 59.897 61.111 0.00 0.00 44.10 5.69
4004 5463 2.102749 CCAACATGGGCGATTGCG 59.897 61.111 0.00 0.00 44.10 4.85
4005 5464 0.814457 TAACCAACATGGGCGATTGC 59.186 50.000 0.00 0.00 43.37 3.56
4006 5465 3.584406 TTTAACCAACATGGGCGATTG 57.416 42.857 0.00 0.00 43.37 2.67
4007 5466 4.817318 AATTTAACCAACATGGGCGATT 57.183 36.364 0.00 0.00 43.37 3.34
4008 5467 4.817318 AAATTTAACCAACATGGGCGAT 57.183 36.364 0.00 0.00 43.37 4.58
4009 5468 5.394663 CCATAAATTTAACCAACATGGGCGA 60.395 40.000 1.21 0.00 43.37 5.54
4010 5469 4.808364 CCATAAATTTAACCAACATGGGCG 59.192 41.667 1.21 0.00 43.37 6.13
4011 5470 5.739959 ACCATAAATTTAACCAACATGGGC 58.260 37.500 15.13 0.00 43.37 5.36
4012 5471 6.940739 TGACCATAAATTTAACCAACATGGG 58.059 36.000 15.13 0.00 43.37 4.00
4013 5472 8.839310 TTTGACCATAAATTTAACCAACATGG 57.161 30.769 10.89 10.89 45.02 3.66
4014 5473 9.487790 ACTTTGACCATAAATTTAACCAACATG 57.512 29.630 1.21 0.00 0.00 3.21
4030 5489 9.362151 TGGTTTTCTAGATTTAACTTTGACCAT 57.638 29.630 0.00 0.00 0.00 3.55
4031 5490 8.754991 TGGTTTTCTAGATTTAACTTTGACCA 57.245 30.769 0.00 0.00 0.00 4.02
4032 5491 9.626045 CATGGTTTTCTAGATTTAACTTTGACC 57.374 33.333 0.00 0.00 0.00 4.02
4033 5492 9.626045 CCATGGTTTTCTAGATTTAACTTTGAC 57.374 33.333 2.57 0.00 0.00 3.18
4034 5493 8.802267 CCCATGGTTTTCTAGATTTAACTTTGA 58.198 33.333 11.73 0.00 0.00 2.69
4035 5494 7.545615 GCCCATGGTTTTCTAGATTTAACTTTG 59.454 37.037 11.73 2.18 0.00 2.77
4036 5495 7.234577 TGCCCATGGTTTTCTAGATTTAACTTT 59.765 33.333 11.73 0.00 0.00 2.66
4037 5496 6.723977 TGCCCATGGTTTTCTAGATTTAACTT 59.276 34.615 11.73 0.00 0.00 2.66
4038 5497 6.152831 GTGCCCATGGTTTTCTAGATTTAACT 59.847 38.462 11.73 0.00 0.00 2.24
4039 5498 6.071616 TGTGCCCATGGTTTTCTAGATTTAAC 60.072 38.462 11.73 0.00 0.00 2.01
4040 5499 6.013379 TGTGCCCATGGTTTTCTAGATTTAA 58.987 36.000 11.73 0.00 0.00 1.52
4041 5500 5.417580 GTGTGCCCATGGTTTTCTAGATTTA 59.582 40.000 11.73 0.00 0.00 1.40
4042 5501 4.220602 GTGTGCCCATGGTTTTCTAGATTT 59.779 41.667 11.73 0.00 0.00 2.17
4043 5502 3.763897 GTGTGCCCATGGTTTTCTAGATT 59.236 43.478 11.73 0.00 0.00 2.40
4044 5503 3.010584 AGTGTGCCCATGGTTTTCTAGAT 59.989 43.478 11.73 0.00 0.00 1.98
4045 5504 2.375174 AGTGTGCCCATGGTTTTCTAGA 59.625 45.455 11.73 0.00 0.00 2.43
4046 5505 2.795329 AGTGTGCCCATGGTTTTCTAG 58.205 47.619 11.73 0.00 0.00 2.43
4047 5506 2.969821 AGTGTGCCCATGGTTTTCTA 57.030 45.000 11.73 0.00 0.00 2.10
4048 5507 2.158534 TGTAGTGTGCCCATGGTTTTCT 60.159 45.455 11.73 5.10 0.00 2.52
4049 5508 2.030274 GTGTAGTGTGCCCATGGTTTTC 60.030 50.000 11.73 0.00 0.00 2.29
4050 5509 1.960689 GTGTAGTGTGCCCATGGTTTT 59.039 47.619 11.73 0.00 0.00 2.43
4051 5510 1.144913 AGTGTAGTGTGCCCATGGTTT 59.855 47.619 11.73 0.00 0.00 3.27
4052 5511 0.771127 AGTGTAGTGTGCCCATGGTT 59.229 50.000 11.73 0.00 0.00 3.67
4053 5512 1.651737 TAGTGTAGTGTGCCCATGGT 58.348 50.000 11.73 0.00 0.00 3.55
4054 5513 2.170397 TCATAGTGTAGTGTGCCCATGG 59.830 50.000 4.14 4.14 0.00 3.66
4055 5514 3.541996 TCATAGTGTAGTGTGCCCATG 57.458 47.619 0.00 0.00 0.00 3.66
4056 5515 4.568072 TTTCATAGTGTAGTGTGCCCAT 57.432 40.909 0.00 0.00 0.00 4.00
4057 5516 4.323417 CTTTTCATAGTGTAGTGTGCCCA 58.677 43.478 0.00 0.00 0.00 5.36
4058 5517 3.689649 CCTTTTCATAGTGTAGTGTGCCC 59.310 47.826 0.00 0.00 0.00 5.36
4059 5518 4.575885 TCCTTTTCATAGTGTAGTGTGCC 58.424 43.478 0.00 0.00 0.00 5.01
4060 5519 4.631813 CCTCCTTTTCATAGTGTAGTGTGC 59.368 45.833 0.00 0.00 0.00 4.57
4061 5520 5.046591 TCCCTCCTTTTCATAGTGTAGTGTG 60.047 44.000 0.00 0.00 0.00 3.82
4073 5532 7.592736 TGATAGTAGATACTCCCTCCTTTTCA 58.407 38.462 0.00 0.00 37.73 2.69
4074 5533 8.658840 ATGATAGTAGATACTCCCTCCTTTTC 57.341 38.462 0.00 0.00 37.73 2.29
4075 5534 8.235230 TGATGATAGTAGATACTCCCTCCTTTT 58.765 37.037 0.00 0.00 37.73 2.27
4076 5535 7.770662 TGATGATAGTAGATACTCCCTCCTTT 58.229 38.462 0.00 0.00 37.73 3.11
4079 5538 6.964464 TCTGATGATAGTAGATACTCCCTCC 58.036 44.000 0.00 0.00 37.73 4.30
4156 5639 1.268794 TGTTTCGTTGCCATGGTTTCG 60.269 47.619 14.67 14.79 0.00 3.46
4203 5686 1.078214 CAAGGGCTTGCGAGATCCA 60.078 57.895 4.70 0.00 33.45 3.41
4392 5875 3.056821 TGATGGACCACAAGAAGTACTCG 60.057 47.826 0.00 0.00 0.00 4.18
4406 5889 1.277557 AGCTCAACTCACTGATGGACC 59.722 52.381 0.00 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.