Multiple sequence alignment - TraesCS6B01G186400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G186400 chr6B 100.000 3697 0 0 1 3697 212565571 212569267 0.000000e+00 6828.0
1 TraesCS6B01G186400 chr6D 96.248 1466 48 5 1513 2976 120659113 120657653 0.000000e+00 2396.0
2 TraesCS6B01G186400 chr6D 93.463 566 30 4 939 1503 120659712 120659153 0.000000e+00 833.0
3 TraesCS6B01G186400 chr6D 91.696 578 30 4 3138 3697 120657605 120657028 0.000000e+00 785.0
4 TraesCS6B01G186400 chr6D 85.015 327 21 9 97 408 120663755 120663442 1.290000e-79 307.0
5 TraesCS6B01G186400 chr6D 100.000 33 0 0 3134 3166 226778313 226778281 1.110000e-05 62.1
6 TraesCS6B01G186400 chr6A 92.247 761 41 8 2195 2944 158921032 158920279 0.000000e+00 1062.0
7 TraesCS6B01G186400 chr6A 95.060 668 27 3 1506 2167 158921699 158921032 0.000000e+00 1046.0
8 TraesCS6B01G186400 chr6A 91.115 574 39 7 939 1503 158922345 158921775 0.000000e+00 767.0
9 TraesCS6B01G186400 chr6A 89.181 342 17 10 83 408 158923967 158923630 3.440000e-110 409.0
10 TraesCS6B01G186400 chrUn 90.854 164 15 0 2970 3133 126903201 126903364 1.730000e-53 220.0
11 TraesCS6B01G186400 chr5B 90.419 167 16 0 2967 3133 312766326 312766160 1.730000e-53 220.0
12 TraesCS6B01G186400 chr5B 88.757 169 19 0 2965 3133 293952032 293952200 1.350000e-49 207.0
13 TraesCS6B01G186400 chr2D 90.419 167 16 0 2967 3133 649604429 649604263 1.730000e-53 220.0
14 TraesCS6B01G186400 chr5A 89.349 169 18 0 2965 3133 345241389 345241221 2.890000e-51 213.0
15 TraesCS6B01G186400 chr5A 97.143 35 1 0 3132 3166 691029258 691029224 3.990000e-05 60.2
16 TraesCS6B01G186400 chr1B 89.820 167 16 1 2967 3133 192148161 192147996 2.890000e-51 213.0
17 TraesCS6B01G186400 chr3D 89.157 166 16 2 2968 3133 45051034 45051197 4.840000e-49 206.0
18 TraesCS6B01G186400 chr2A 88.623 167 19 0 2967 3133 386058240 386058406 1.740000e-48 204.0
19 TraesCS6B01G186400 chr2B 88.235 170 19 1 2962 3131 152859088 152858920 6.260000e-48 202.0
20 TraesCS6B01G186400 chr2B 94.872 39 2 0 3130 3168 105917836 105917874 1.110000e-05 62.1
21 TraesCS6B01G186400 chr7B 87.234 94 12 0 2968 3061 140933790 140933883 1.400000e-19 108.0
22 TraesCS6B01G186400 chr7D 100.000 33 0 0 3134 3166 43876354 43876386 1.110000e-05 62.1
23 TraesCS6B01G186400 chr7D 97.297 37 0 1 3136 3171 133308215 133308179 1.110000e-05 62.1
24 TraesCS6B01G186400 chr3B 100.000 33 0 0 3134 3166 665987668 665987700 1.110000e-05 62.1
25 TraesCS6B01G186400 chr5D 97.059 34 1 0 3138 3171 329280039 329280072 1.430000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G186400 chr6B 212565571 212569267 3696 False 6828.00 6828 100.00000 1 3697 1 chr6B.!!$F1 3696
1 TraesCS6B01G186400 chr6D 120657028 120663755 6727 True 1080.25 2396 91.60550 97 3697 4 chr6D.!!$R2 3600
2 TraesCS6B01G186400 chr6A 158920279 158923967 3688 True 821.00 1062 91.90075 83 2944 4 chr6A.!!$R1 2861

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
866 4768 0.036294 GGCACCACCACCTACTTCTC 60.036 60.0 0.00 0.0 38.86 2.87 F
1331 5282 0.098200 CTGTTCACGCGTCGGAGATA 59.902 55.0 9.86 0.0 40.67 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1752 5778 0.313987 CGGCTGGGTTTTCTCCAAAC 59.686 55.0 0.0 0.0 43.78 2.93 R
3051 7115 0.106708 TTATCTGTGATGCTCCCGCC 59.893 55.0 0.0 0.0 34.43 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.502191 TGTTCAAACAGACCAAGCAAC 57.498 42.857 0.00 0.00 34.30 4.17
34 35 3.088532 TGTTCAAACAGACCAAGCAACT 58.911 40.909 0.00 0.00 34.30 3.16
35 36 3.119531 TGTTCAAACAGACCAAGCAACTG 60.120 43.478 0.00 0.00 37.62 3.16
36 37 2.997980 TCAAACAGACCAAGCAACTGA 58.002 42.857 0.00 0.00 35.85 3.41
37 38 3.351740 TCAAACAGACCAAGCAACTGAA 58.648 40.909 0.00 0.00 35.85 3.02
38 39 3.761218 TCAAACAGACCAAGCAACTGAAA 59.239 39.130 0.00 0.00 35.85 2.69
39 40 4.107622 CAAACAGACCAAGCAACTGAAAG 58.892 43.478 0.00 0.00 42.29 2.62
40 41 1.678101 ACAGACCAAGCAACTGAAAGC 59.322 47.619 0.00 0.00 37.60 3.51
41 42 1.677576 CAGACCAAGCAACTGAAAGCA 59.322 47.619 0.00 0.00 37.60 3.91
42 43 1.678101 AGACCAAGCAACTGAAAGCAC 59.322 47.619 0.00 0.00 37.60 4.40
43 44 0.746659 ACCAAGCAACTGAAAGCACC 59.253 50.000 0.00 0.00 37.60 5.01
44 45 1.035139 CCAAGCAACTGAAAGCACCT 58.965 50.000 0.00 0.00 37.60 4.00
45 46 2.229792 CCAAGCAACTGAAAGCACCTA 58.770 47.619 0.00 0.00 37.60 3.08
46 47 2.227388 CCAAGCAACTGAAAGCACCTAG 59.773 50.000 0.00 0.00 37.60 3.02
47 48 3.141398 CAAGCAACTGAAAGCACCTAGA 58.859 45.455 0.00 0.00 37.60 2.43
48 49 3.710209 AGCAACTGAAAGCACCTAGAT 57.290 42.857 0.00 0.00 37.60 1.98
49 50 4.026356 AGCAACTGAAAGCACCTAGATT 57.974 40.909 0.00 0.00 37.60 2.40
50 51 5.165961 AGCAACTGAAAGCACCTAGATTA 57.834 39.130 0.00 0.00 37.60 1.75
51 52 4.938226 AGCAACTGAAAGCACCTAGATTAC 59.062 41.667 0.00 0.00 37.60 1.89
52 53 4.938226 GCAACTGAAAGCACCTAGATTACT 59.062 41.667 0.00 0.00 37.60 2.24
53 54 5.163814 GCAACTGAAAGCACCTAGATTACTG 60.164 44.000 0.00 0.00 37.60 2.74
54 55 5.746990 ACTGAAAGCACCTAGATTACTGT 57.253 39.130 0.00 0.00 37.60 3.55
55 56 6.115448 ACTGAAAGCACCTAGATTACTGTT 57.885 37.500 0.00 0.00 37.60 3.16
56 57 6.166982 ACTGAAAGCACCTAGATTACTGTTC 58.833 40.000 0.00 0.00 37.60 3.18
57 58 6.109156 TGAAAGCACCTAGATTACTGTTCA 57.891 37.500 0.00 0.00 0.00 3.18
58 59 6.530120 TGAAAGCACCTAGATTACTGTTCAA 58.470 36.000 0.00 0.00 0.00 2.69
59 60 6.995686 TGAAAGCACCTAGATTACTGTTCAAA 59.004 34.615 0.00 0.00 0.00 2.69
60 61 6.803154 AAGCACCTAGATTACTGTTCAAAC 57.197 37.500 0.00 0.00 0.00 2.93
61 62 5.865085 AGCACCTAGATTACTGTTCAAACA 58.135 37.500 0.00 0.00 37.37 2.83
62 63 6.476378 AGCACCTAGATTACTGTTCAAACAT 58.524 36.000 0.00 0.00 38.41 2.71
63 64 6.942576 AGCACCTAGATTACTGTTCAAACATT 59.057 34.615 0.00 0.00 38.41 2.71
64 65 7.023575 GCACCTAGATTACTGTTCAAACATTG 58.976 38.462 0.00 0.00 38.41 2.82
65 66 7.308589 GCACCTAGATTACTGTTCAAACATTGT 60.309 37.037 0.00 0.00 38.41 2.71
66 67 8.567948 CACCTAGATTACTGTTCAAACATTGTT 58.432 33.333 0.00 0.00 38.41 2.83
67 68 9.131791 ACCTAGATTACTGTTCAAACATTGTTT 57.868 29.630 8.97 8.97 38.41 2.83
68 69 9.965824 CCTAGATTACTGTTCAAACATTGTTTT 57.034 29.630 12.02 0.08 38.41 2.43
71 72 9.736023 AGATTACTGTTCAAACATTGTTTTCTC 57.264 29.630 12.02 6.29 38.41 2.87
72 73 9.736023 GATTACTGTTCAAACATTGTTTTCTCT 57.264 29.630 12.02 0.00 38.41 3.10
156 157 1.998315 CTTGCGTCCTGATCAGAAGTG 59.002 52.381 24.62 11.41 0.00 3.16
165 166 1.198713 GATCAGAAGTGGAGAGCCCA 58.801 55.000 0.00 0.00 44.25 5.36
328 338 2.223803 TAACGATGCCCCAACCAAAT 57.776 45.000 0.00 0.00 0.00 2.32
332 342 0.826062 GATGCCCCAACCAAATCCAG 59.174 55.000 0.00 0.00 0.00 3.86
342 352 1.846439 ACCAAATCCAGACCCATCGAT 59.154 47.619 0.00 0.00 0.00 3.59
352 362 2.158900 AGACCCATCGATCATCAACCAC 60.159 50.000 0.00 0.00 0.00 4.16
356 366 1.134128 CATCGATCATCAACCACCCCA 60.134 52.381 0.00 0.00 0.00 4.96
377 390 1.943730 AAGCAAGAACCCACACCCCA 61.944 55.000 0.00 0.00 0.00 4.96
378 391 1.456705 GCAAGAACCCACACCCCAA 60.457 57.895 0.00 0.00 0.00 4.12
391 412 2.516888 CCCCAAGTCGAGTGGTGGT 61.517 63.158 12.85 0.00 34.01 4.16
408 429 3.007635 GTGGTAAGAATCTTTCCGTGGG 58.992 50.000 12.88 0.00 0.00 4.61
409 430 2.640826 TGGTAAGAATCTTTCCGTGGGT 59.359 45.455 12.88 0.00 0.00 4.51
410 431 3.073356 TGGTAAGAATCTTTCCGTGGGTT 59.927 43.478 12.88 0.00 0.00 4.11
411 432 4.286549 TGGTAAGAATCTTTCCGTGGGTTA 59.713 41.667 12.88 0.00 0.00 2.85
412 433 4.874396 GGTAAGAATCTTTCCGTGGGTTAG 59.126 45.833 0.00 0.00 0.00 2.34
413 434 2.987232 AGAATCTTTCCGTGGGTTAGC 58.013 47.619 0.00 0.00 0.00 3.09
415 436 2.403252 ATCTTTCCGTGGGTTAGCTG 57.597 50.000 0.00 0.00 0.00 4.24
416 437 0.323629 TCTTTCCGTGGGTTAGCTGG 59.676 55.000 0.00 0.00 0.00 4.85
417 438 0.323629 CTTTCCGTGGGTTAGCTGGA 59.676 55.000 0.00 0.00 0.00 3.86
418 439 0.766131 TTTCCGTGGGTTAGCTGGAA 59.234 50.000 0.00 0.00 36.95 3.53
419 440 0.766131 TTCCGTGGGTTAGCTGGAAA 59.234 50.000 0.00 0.00 35.86 3.13
420 441 0.766131 TCCGTGGGTTAGCTGGAAAA 59.234 50.000 0.00 0.00 0.00 2.29
421 442 1.143277 TCCGTGGGTTAGCTGGAAAAA 59.857 47.619 0.00 0.00 0.00 1.94
422 443 1.268625 CCGTGGGTTAGCTGGAAAAAC 59.731 52.381 0.00 0.00 0.00 2.43
423 444 1.268625 CGTGGGTTAGCTGGAAAAACC 59.731 52.381 6.78 6.78 41.62 3.27
433 454 2.656947 TGGAAAAACCAGTCCTCCAG 57.343 50.000 0.00 0.00 44.64 3.86
440 461 1.920325 CCAGTCCTCCAGGCTCCAA 60.920 63.158 0.00 0.00 34.44 3.53
444 465 0.402121 GTCCTCCAGGCTCCAAAGTT 59.598 55.000 0.00 0.00 34.44 2.66
445 466 0.401738 TCCTCCAGGCTCCAAAGTTG 59.598 55.000 0.00 0.00 34.44 3.16
466 487 6.655003 AGTTGTTTGGTGACTACATTATCAGG 59.345 38.462 0.00 0.00 0.00 3.86
469 490 5.353394 TTGGTGACTACATTATCAGGGAC 57.647 43.478 0.00 0.00 0.00 4.46
477 498 8.723365 TGACTACATTATCAGGGACCAATAATT 58.277 33.333 0.00 0.00 0.00 1.40
490 722 8.914011 AGGGACCAATAATTAATTCTTAAGCAC 58.086 33.333 3.39 0.00 0.00 4.40
495 727 9.301153 CCAATAATTAATTCTTAAGCACCACAC 57.699 33.333 3.39 0.00 0.00 3.82
498 730 5.957842 TTAATTCTTAAGCACCACACTGG 57.042 39.130 0.00 0.00 45.02 4.00
506 738 4.189580 ACCACACTGGCGCTTGGT 62.190 61.111 7.64 9.74 42.67 3.67
507 739 2.906897 CCACACTGGCGCTTGGTT 60.907 61.111 7.64 0.00 0.00 3.67
508 740 2.332514 CACACTGGCGCTTGGTTG 59.667 61.111 7.64 0.11 0.00 3.77
509 741 3.595758 ACACTGGCGCTTGGTTGC 61.596 61.111 7.64 0.00 0.00 4.17
510 742 3.289834 CACTGGCGCTTGGTTGCT 61.290 61.111 7.64 0.00 0.00 3.91
512 744 3.289834 CTGGCGCTTGGTTGCTGT 61.290 61.111 7.64 0.00 0.00 4.40
513 745 1.965930 CTGGCGCTTGGTTGCTGTA 60.966 57.895 7.64 0.00 0.00 2.74
514 746 1.915614 CTGGCGCTTGGTTGCTGTAG 61.916 60.000 7.64 0.00 0.00 2.74
517 749 2.176792 GCTTGGTTGCTGTAGCGC 59.823 61.111 0.00 0.00 45.83 5.92
518 750 2.476051 CTTGGTTGCTGTAGCGCG 59.524 61.111 0.00 0.00 45.83 6.86
519 751 2.027073 CTTGGTTGCTGTAGCGCGA 61.027 57.895 12.10 0.00 45.83 5.87
521 753 2.126071 GGTTGCTGTAGCGCGAGA 60.126 61.111 12.10 0.00 45.83 4.04
522 754 2.161486 GGTTGCTGTAGCGCGAGAG 61.161 63.158 12.10 10.39 45.83 3.20
526 758 1.356979 GCTGTAGCGCGAGAGATCA 59.643 57.895 18.73 0.00 0.00 2.92
545 807 2.561419 TCACAGTAGTGGTTAGGCACTC 59.439 50.000 1.92 0.00 45.91 3.51
549 811 3.006967 CAGTAGTGGTTAGGCACTCAGTT 59.993 47.826 0.00 0.00 41.75 3.16
554 816 2.028112 TGGTTAGGCACTCAGTTAGCAG 60.028 50.000 0.00 0.00 41.75 4.24
555 817 2.622436 GTTAGGCACTCAGTTAGCAGG 58.378 52.381 0.00 0.00 41.75 4.85
556 818 2.231716 TAGGCACTCAGTTAGCAGGA 57.768 50.000 0.00 0.00 41.75 3.86
557 819 1.577736 AGGCACTCAGTTAGCAGGAT 58.422 50.000 0.00 0.00 0.00 3.24
558 820 2.752030 AGGCACTCAGTTAGCAGGATA 58.248 47.619 0.00 0.00 0.00 2.59
560 822 3.070734 AGGCACTCAGTTAGCAGGATATG 59.929 47.826 0.00 0.00 0.00 1.78
590 1469 0.469144 TTTTCACCCCTGCCCAAGTC 60.469 55.000 0.00 0.00 0.00 3.01
598 1477 2.105821 CCCCTGCCCAAGTCGATATTTA 59.894 50.000 0.00 0.00 0.00 1.40
605 1484 5.301551 TGCCCAAGTCGATATTTATGCAAAT 59.698 36.000 0.00 0.00 38.02 2.32
608 1487 7.306749 GCCCAAGTCGATATTTATGCAAATTTG 60.307 37.037 14.03 14.03 35.88 2.32
611 1490 9.890085 CAAGTCGATATTTATGCAAATTTGTTG 57.110 29.630 19.03 6.95 35.88 3.33
619 1498 1.585297 GCAAATTTGTTGCAGTGCCT 58.415 45.000 19.03 0.00 44.34 4.75
620 1499 2.753296 GCAAATTTGTTGCAGTGCCTA 58.247 42.857 19.03 0.00 44.34 3.93
621 1500 2.476241 GCAAATTTGTTGCAGTGCCTAC 59.524 45.455 19.03 11.40 44.34 3.18
622 1501 3.799917 GCAAATTTGTTGCAGTGCCTACT 60.800 43.478 19.03 0.00 44.34 2.57
623 1502 3.923017 AATTTGTTGCAGTGCCTACTC 57.077 42.857 13.72 0.00 34.07 2.59
624 1503 2.340210 TTTGTTGCAGTGCCTACTCA 57.660 45.000 13.72 1.83 34.07 3.41
625 1504 1.882912 TTGTTGCAGTGCCTACTCAG 58.117 50.000 13.72 0.00 34.07 3.35
626 1505 0.603707 TGTTGCAGTGCCTACTCAGC 60.604 55.000 13.72 0.00 34.07 4.26
627 1506 0.603707 GTTGCAGTGCCTACTCAGCA 60.604 55.000 13.72 0.00 34.98 4.41
653 1532 8.686334 ACTTTTGCTGTCTTGATCTTCTAAAAA 58.314 29.630 0.00 0.00 0.00 1.94
654 1533 9.688592 CTTTTGCTGTCTTGATCTTCTAAAAAT 57.311 29.630 0.00 0.00 0.00 1.82
660 1539 8.567285 TGTCTTGATCTTCTAAAAATTCTCCC 57.433 34.615 0.00 0.00 0.00 4.30
662 1541 6.823689 TCTTGATCTTCTAAAAATTCTCCCGG 59.176 38.462 0.00 0.00 0.00 5.73
665 1544 7.346471 TGATCTTCTAAAAATTCTCCCGGAAT 58.654 34.615 0.73 0.00 45.61 3.01
666 1545 7.283127 TGATCTTCTAAAAATTCTCCCGGAATG 59.717 37.037 0.73 0.00 43.17 2.67
667 1546 6.717289 TCTTCTAAAAATTCTCCCGGAATGA 58.283 36.000 0.73 0.00 43.17 2.57
669 1548 7.834181 TCTTCTAAAAATTCTCCCGGAATGAAT 59.166 33.333 0.73 6.88 43.17 2.57
670 1549 9.120538 CTTCTAAAAATTCTCCCGGAATGAATA 57.879 33.333 0.73 0.00 43.17 1.75
675 1605 7.454260 AAATTCTCCCGGAATGAATAATAGC 57.546 36.000 0.73 0.00 43.17 2.97
681 1662 6.361433 TCCCGGAATGAATAATAGCTGAAAA 58.639 36.000 0.73 0.00 0.00 2.29
682 1663 7.004086 TCCCGGAATGAATAATAGCTGAAAAT 58.996 34.615 0.73 0.00 0.00 1.82
683 1664 7.505585 TCCCGGAATGAATAATAGCTGAAAATT 59.494 33.333 0.73 0.00 0.00 1.82
708 1689 4.751767 TTTCAGTTTGCCAGGAAATTGT 57.248 36.364 6.95 0.00 0.00 2.71
710 1691 3.030291 TCAGTTTGCCAGGAAATTGTGT 58.970 40.909 6.95 0.00 0.00 3.72
711 1692 3.125316 CAGTTTGCCAGGAAATTGTGTG 58.875 45.455 0.00 0.00 0.00 3.82
712 1693 2.765699 AGTTTGCCAGGAAATTGTGTGT 59.234 40.909 0.00 0.00 0.00 3.72
713 1694 3.197549 AGTTTGCCAGGAAATTGTGTGTT 59.802 39.130 0.00 0.00 0.00 3.32
714 1695 3.902881 TTGCCAGGAAATTGTGTGTTT 57.097 38.095 0.00 0.00 0.00 2.83
716 1697 4.213564 TGCCAGGAAATTGTGTGTTTTT 57.786 36.364 0.00 0.00 0.00 1.94
718 1699 5.734720 TGCCAGGAAATTGTGTGTTTTTAA 58.265 33.333 0.00 0.00 0.00 1.52
719 1700 6.173339 TGCCAGGAAATTGTGTGTTTTTAAA 58.827 32.000 0.00 0.00 0.00 1.52
720 1701 6.314896 TGCCAGGAAATTGTGTGTTTTTAAAG 59.685 34.615 0.00 0.00 0.00 1.85
721 1702 6.536941 GCCAGGAAATTGTGTGTTTTTAAAGA 59.463 34.615 0.00 0.00 0.00 2.52
723 1704 8.387354 CCAGGAAATTGTGTGTTTTTAAAGAAC 58.613 33.333 6.41 6.41 0.00 3.01
724 1705 8.387354 CAGGAAATTGTGTGTTTTTAAAGAACC 58.613 33.333 9.35 0.00 0.00 3.62
725 1706 8.097662 AGGAAATTGTGTGTTTTTAAAGAACCA 58.902 29.630 9.35 5.98 0.00 3.67
726 1707 8.387354 GGAAATTGTGTGTTTTTAAAGAACCAG 58.613 33.333 9.35 0.00 0.00 4.00
727 1708 8.840833 AAATTGTGTGTTTTTAAAGAACCAGT 57.159 26.923 9.35 0.00 0.00 4.00
728 1709 9.930693 AAATTGTGTGTTTTTAAAGAACCAGTA 57.069 25.926 9.35 2.61 0.00 2.74
731 4632 9.930693 TTGTGTGTTTTTAAAGAACCAGTATTT 57.069 25.926 9.35 0.00 0.00 1.40
774 4675 9.822727 ACCAGGAAATATTTTAGAAGAGGAAAA 57.177 29.630 1.43 0.00 0.00 2.29
825 4726 2.544277 GCCCAAAAACCTACCACGAAAC 60.544 50.000 0.00 0.00 0.00 2.78
828 4729 3.379057 CCAAAAACCTACCACGAAACACT 59.621 43.478 0.00 0.00 0.00 3.55
830 4731 4.888038 AAAACCTACCACGAAACACTTC 57.112 40.909 0.00 0.00 0.00 3.01
832 4733 4.942761 AACCTACCACGAAACACTTCTA 57.057 40.909 0.00 0.00 0.00 2.10
834 4735 3.893813 ACCTACCACGAAACACTTCTACT 59.106 43.478 0.00 0.00 0.00 2.57
835 4736 5.072741 ACCTACCACGAAACACTTCTACTA 58.927 41.667 0.00 0.00 0.00 1.82
836 4737 5.048434 ACCTACCACGAAACACTTCTACTAC 60.048 44.000 0.00 0.00 0.00 2.73
840 4741 6.285990 ACCACGAAACACTTCTACTACATTT 58.714 36.000 0.00 0.00 0.00 2.32
842 4743 7.281549 ACCACGAAACACTTCTACTACATTTTT 59.718 33.333 0.00 0.00 0.00 1.94
844 4745 7.111593 CACGAAACACTTCTACTACATTTTTGC 59.888 37.037 0.00 0.00 0.00 3.68
845 4746 6.577427 CGAAACACTTCTACTACATTTTTGCC 59.423 38.462 0.00 0.00 0.00 4.52
846 4747 5.959618 ACACTTCTACTACATTTTTGCCC 57.040 39.130 0.00 0.00 0.00 5.36
847 4748 4.454504 ACACTTCTACTACATTTTTGCCCG 59.545 41.667 0.00 0.00 0.00 6.13
866 4768 0.036294 GGCACCACCACCTACTTCTC 60.036 60.000 0.00 0.00 38.86 2.87
867 4769 0.389948 GCACCACCACCTACTTCTCG 60.390 60.000 0.00 0.00 0.00 4.04
869 4771 1.067776 CACCACCACCTACTTCTCGTC 60.068 57.143 0.00 0.00 0.00 4.20
870 4772 1.203025 ACCACCACCTACTTCTCGTCT 60.203 52.381 0.00 0.00 0.00 4.18
871 4773 1.473278 CCACCACCTACTTCTCGTCTC 59.527 57.143 0.00 0.00 0.00 3.36
873 4775 0.733729 CCACCTACTTCTCGTCTCCG 59.266 60.000 0.00 0.00 0.00 4.63
874 4776 0.099082 CACCTACTTCTCGTCTCCGC 59.901 60.000 0.00 0.00 0.00 5.54
875 4777 1.031029 ACCTACTTCTCGTCTCCGCC 61.031 60.000 0.00 0.00 0.00 6.13
876 4778 1.726533 CCTACTTCTCGTCTCCGCCC 61.727 65.000 0.00 0.00 0.00 6.13
877 4779 1.726533 CTACTTCTCGTCTCCGCCCC 61.727 65.000 0.00 0.00 0.00 5.80
878 4780 2.207501 TACTTCTCGTCTCCGCCCCT 62.208 60.000 0.00 0.00 0.00 4.79
879 4781 3.068691 TTCTCGTCTCCGCCCCTG 61.069 66.667 0.00 0.00 0.00 4.45
880 4782 3.881019 TTCTCGTCTCCGCCCCTGT 62.881 63.158 0.00 0.00 0.00 4.00
882 4784 1.828660 CTCGTCTCCGCCCCTGTAT 60.829 63.158 0.00 0.00 0.00 2.29
883 4785 1.380785 TCGTCTCCGCCCCTGTATT 60.381 57.895 0.00 0.00 0.00 1.89
884 4786 0.974010 TCGTCTCCGCCCCTGTATTT 60.974 55.000 0.00 0.00 0.00 1.40
885 4787 0.107848 CGTCTCCGCCCCTGTATTTT 60.108 55.000 0.00 0.00 0.00 1.82
923 4825 0.336737 AGAAACCACCACCAAACCCA 59.663 50.000 0.00 0.00 0.00 4.51
924 4826 0.750249 GAAACCACCACCAAACCCAG 59.250 55.000 0.00 0.00 0.00 4.45
927 4834 1.231641 CCACCACCAAACCCAGGAA 59.768 57.895 0.00 0.00 0.00 3.36
1281 5232 2.030007 TCGTTGGTCGATCCGTTTTACT 60.030 45.455 0.00 0.00 44.01 2.24
1286 5237 5.138125 TGGTCGATCCGTTTTACTAGTTT 57.862 39.130 0.00 0.00 39.52 2.66
1287 5238 5.540911 TGGTCGATCCGTTTTACTAGTTTT 58.459 37.500 0.00 0.00 39.52 2.43
1311 5262 0.670546 CGGTGATTTCGGCAGTGACT 60.671 55.000 0.00 0.00 0.00 3.41
1331 5282 0.098200 CTGTTCACGCGTCGGAGATA 59.902 55.000 9.86 0.00 40.67 1.98
1341 5292 2.033662 GCGTCGGAGATATTTGCAGAAC 60.034 50.000 0.00 0.00 40.67 3.01
1364 5315 0.179200 GTGTAATGCCGCCGAGTTTG 60.179 55.000 0.00 0.00 0.00 2.93
1408 5359 2.432444 CGGTGGCAGGTTTTATCTTCA 58.568 47.619 0.00 0.00 0.00 3.02
1412 5363 3.821033 GTGGCAGGTTTTATCTTCACTGT 59.179 43.478 0.00 0.00 0.00 3.55
1413 5364 5.001232 GTGGCAGGTTTTATCTTCACTGTA 58.999 41.667 0.00 0.00 0.00 2.74
1490 5441 5.549742 TCAACATTTCTGCCTTGGATTTT 57.450 34.783 0.00 0.00 0.00 1.82
1569 5595 0.324368 AGGTCAGTAGGCCGATGTCA 60.324 55.000 0.00 0.00 0.00 3.58
1635 5661 6.535865 TGTTATTTCTTTTGATGGCATGATGC 59.464 34.615 9.33 9.33 44.08 3.91
1665 5691 9.372541 GTTTGTTTGATGCATTTGAAAACTATG 57.627 29.630 19.79 0.00 33.07 2.23
1730 5756 6.993079 ACCCCATGATTTAGTCAAAAGTTTC 58.007 36.000 0.00 0.00 40.97 2.78
1752 5778 1.796617 GCAATAGGCTCGCAAAAGCTG 60.797 52.381 0.00 0.00 42.13 4.24
1765 5791 3.309682 GCAAAAGCTGTTTGGAGAAAACC 59.690 43.478 17.37 0.00 46.47 3.27
1786 5812 1.819632 GCCGCATTGGGACCTACAG 60.820 63.158 1.69 0.00 38.63 2.74
1787 5813 1.602237 CCGCATTGGGACCTACAGT 59.398 57.895 1.69 0.00 0.00 3.55
1846 5872 3.188048 GTGTGAAGCAGAGAAACTGATGG 59.812 47.826 0.00 0.00 44.93 3.51
1915 5941 2.684881 GTGCATATTTCAGGGTGGACAG 59.315 50.000 0.00 0.00 33.77 3.51
1918 5944 3.877508 GCATATTTCAGGGTGGACAGTAC 59.122 47.826 0.00 0.00 0.00 2.73
1954 5981 3.610911 AGGGAACTACTGCATTAGTTGC 58.389 45.455 28.85 28.85 46.53 4.17
2048 6076 3.120683 ACACGTTATGACACGCATCTTTG 60.121 43.478 0.00 0.00 44.37 2.77
2131 6159 1.750778 GGTTGATGGTGATTCCGCAAT 59.249 47.619 0.00 0.00 39.52 3.56
2292 6325 6.474427 CACATGCCATAATAGAGCTGTTTTTG 59.526 38.462 0.00 0.00 0.00 2.44
2355 6389 1.004440 AGAAGTTGGCGCCTCTGTC 60.004 57.895 29.70 19.05 0.00 3.51
2403 6437 0.746659 AAAGTGTGAAGGCAACCAGC 59.253 50.000 0.00 0.00 44.65 4.85
2496 6530 3.326747 ACGTTTCAGCTTAGCCTTACTG 58.673 45.455 0.00 0.00 0.00 2.74
2497 6531 2.673368 CGTTTCAGCTTAGCCTTACTGG 59.327 50.000 0.00 0.00 39.35 4.00
2649 6689 1.277557 AGCTCAACTCACTGATGGACC 59.722 52.381 0.00 0.00 0.00 4.46
2663 6703 3.056821 TGATGGACCACAAGAAGTACTCG 60.057 47.826 0.00 0.00 0.00 4.18
2852 6892 1.078214 CAAGGGCTTGCGAGATCCA 60.078 57.895 4.70 0.00 33.45 3.41
2899 6939 1.268794 TGTTTCGTTGCCATGGTTTCG 60.269 47.619 14.67 14.79 0.00 3.46
2976 7016 6.964464 TCTGATGATAGTAGATACTCCCTCC 58.036 44.000 0.00 0.00 37.73 4.30
2977 7017 6.738086 TCTGATGATAGTAGATACTCCCTCCT 59.262 42.308 0.00 0.00 37.73 3.69
2979 7019 7.770662 TGATGATAGTAGATACTCCCTCCTTT 58.229 38.462 0.00 0.00 37.73 3.11
2980 7020 8.235230 TGATGATAGTAGATACTCCCTCCTTTT 58.765 37.037 0.00 0.00 37.73 2.27
2994 7058 5.046591 TCCCTCCTTTTCATAGTGTAGTGTG 60.047 44.000 0.00 0.00 0.00 3.82
2995 7059 4.631813 CCTCCTTTTCATAGTGTAGTGTGC 59.368 45.833 0.00 0.00 0.00 4.57
2996 7060 4.575885 TCCTTTTCATAGTGTAGTGTGCC 58.424 43.478 0.00 0.00 0.00 5.01
2997 7061 3.689649 CCTTTTCATAGTGTAGTGTGCCC 59.310 47.826 0.00 0.00 0.00 5.36
2999 7063 4.568072 TTTCATAGTGTAGTGTGCCCAT 57.432 40.909 0.00 0.00 0.00 4.00
3000 7064 3.541996 TCATAGTGTAGTGTGCCCATG 57.458 47.619 0.00 0.00 0.00 3.66
3002 7066 1.651737 TAGTGTAGTGTGCCCATGGT 58.348 50.000 11.73 0.00 0.00 3.55
3004 7068 1.144913 AGTGTAGTGTGCCCATGGTTT 59.855 47.619 11.73 0.00 0.00 3.27
3006 7070 2.030274 GTGTAGTGTGCCCATGGTTTTC 60.030 50.000 11.73 0.00 0.00 2.29
3007 7071 2.158534 TGTAGTGTGCCCATGGTTTTCT 60.159 45.455 11.73 5.10 0.00 2.52
3008 7072 2.969821 AGTGTGCCCATGGTTTTCTA 57.030 45.000 11.73 0.00 0.00 2.10
3009 7073 2.795329 AGTGTGCCCATGGTTTTCTAG 58.205 47.619 11.73 0.00 0.00 2.43
3010 7074 2.375174 AGTGTGCCCATGGTTTTCTAGA 59.625 45.455 11.73 0.00 0.00 2.43
3011 7075 3.010584 AGTGTGCCCATGGTTTTCTAGAT 59.989 43.478 11.73 0.00 0.00 1.98
3012 7076 3.763897 GTGTGCCCATGGTTTTCTAGATT 59.236 43.478 11.73 0.00 0.00 2.40
3013 7077 4.220602 GTGTGCCCATGGTTTTCTAGATTT 59.779 41.667 11.73 0.00 0.00 2.17
3014 7078 5.417580 GTGTGCCCATGGTTTTCTAGATTTA 59.582 40.000 11.73 0.00 0.00 1.40
3015 7079 6.013379 TGTGCCCATGGTTTTCTAGATTTAA 58.987 36.000 11.73 0.00 0.00 1.52
3016 7080 6.071616 TGTGCCCATGGTTTTCTAGATTTAAC 60.072 38.462 11.73 0.00 0.00 2.01
3017 7081 6.152831 GTGCCCATGGTTTTCTAGATTTAACT 59.847 38.462 11.73 0.00 0.00 2.24
3018 7082 6.723977 TGCCCATGGTTTTCTAGATTTAACTT 59.276 34.615 11.73 0.00 0.00 2.66
3019 7083 7.234577 TGCCCATGGTTTTCTAGATTTAACTTT 59.765 33.333 11.73 0.00 0.00 2.66
3020 7084 7.545615 GCCCATGGTTTTCTAGATTTAACTTTG 59.454 37.037 11.73 2.18 0.00 2.77
3021 7085 8.802267 CCCATGGTTTTCTAGATTTAACTTTGA 58.198 33.333 11.73 0.00 0.00 2.69
3022 7086 9.626045 CCATGGTTTTCTAGATTTAACTTTGAC 57.374 33.333 2.57 0.00 0.00 3.18
3023 7087 9.626045 CATGGTTTTCTAGATTTAACTTTGACC 57.374 33.333 0.00 0.00 0.00 4.02
3024 7088 8.754991 TGGTTTTCTAGATTTAACTTTGACCA 57.245 30.769 0.00 0.00 0.00 4.02
3025 7089 9.362151 TGGTTTTCTAGATTTAACTTTGACCAT 57.638 29.630 0.00 0.00 0.00 3.55
3041 7105 9.487790 ACTTTGACCATAAATTTAACCAACATG 57.512 29.630 1.21 0.00 0.00 3.21
3042 7106 8.839310 TTTGACCATAAATTTAACCAACATGG 57.161 30.769 10.89 10.89 45.02 3.66
3043 7107 6.940739 TGACCATAAATTTAACCAACATGGG 58.059 36.000 15.13 0.00 43.37 4.00
3044 7108 5.739959 ACCATAAATTTAACCAACATGGGC 58.260 37.500 15.13 0.00 43.37 5.36
3045 7109 4.808364 CCATAAATTTAACCAACATGGGCG 59.192 41.667 1.21 0.00 43.37 6.13
3046 7110 5.394663 CCATAAATTTAACCAACATGGGCGA 60.395 40.000 1.21 0.00 43.37 5.54
3047 7111 4.817318 AAATTTAACCAACATGGGCGAT 57.183 36.364 0.00 0.00 43.37 4.58
3048 7112 4.817318 AATTTAACCAACATGGGCGATT 57.183 36.364 0.00 0.00 43.37 3.34
3049 7113 3.584406 TTTAACCAACATGGGCGATTG 57.416 42.857 0.00 0.00 43.37 2.67
3050 7114 0.814457 TAACCAACATGGGCGATTGC 59.186 50.000 0.00 0.00 43.37 3.56
3051 7115 2.102749 CCAACATGGGCGATTGCG 59.897 61.111 0.00 0.00 44.10 4.85
3052 7116 2.102749 CAACATGGGCGATTGCGG 59.897 61.111 0.00 0.00 44.10 5.69
3072 7136 2.898729 CGGGAGCATCACAGATAACT 57.101 50.000 0.00 0.00 39.81 2.24
3073 7137 3.185246 CGGGAGCATCACAGATAACTT 57.815 47.619 0.00 0.00 39.81 2.66
3074 7138 3.535561 CGGGAGCATCACAGATAACTTT 58.464 45.455 0.00 0.00 39.81 2.66
3075 7139 3.310774 CGGGAGCATCACAGATAACTTTG 59.689 47.826 0.00 0.00 39.81 2.77
3076 7140 4.517285 GGGAGCATCACAGATAACTTTGA 58.483 43.478 0.00 0.00 39.41 2.69
3077 7141 4.943705 GGGAGCATCACAGATAACTTTGAA 59.056 41.667 0.00 0.00 39.41 2.69
3078 7142 5.591877 GGGAGCATCACAGATAACTTTGAAT 59.408 40.000 0.00 0.00 39.41 2.57
3079 7143 6.096001 GGGAGCATCACAGATAACTTTGAATT 59.904 38.462 0.00 0.00 39.41 2.17
3080 7144 7.192232 GGAGCATCACAGATAACTTTGAATTC 58.808 38.462 0.00 0.00 36.59 2.17
3081 7145 6.779117 AGCATCACAGATAACTTTGAATTCG 58.221 36.000 0.04 0.00 36.59 3.34
3082 7146 6.372659 AGCATCACAGATAACTTTGAATTCGT 59.627 34.615 0.04 0.00 36.59 3.85
3083 7147 7.549134 AGCATCACAGATAACTTTGAATTCGTA 59.451 33.333 0.04 0.00 36.59 3.43
3084 7148 8.338259 GCATCACAGATAACTTTGAATTCGTAT 58.662 33.333 0.04 0.00 36.59 3.06
3087 7151 8.592155 TCACAGATAACTTTGAATTCGTATTCG 58.408 33.333 9.79 0.00 42.55 3.34
3088 7152 8.592155 CACAGATAACTTTGAATTCGTATTCGA 58.408 33.333 9.79 5.55 42.55 3.71
3105 7169 4.950434 TTCGAAAGAAGTTTTCAACGGT 57.050 36.364 0.00 0.00 46.92 4.83
3107 7171 6.607735 TTCGAAAGAAGTTTTCAACGGTAT 57.392 33.333 0.00 0.00 46.92 2.73
3108 7172 5.981174 TCGAAAGAAGTTTTCAACGGTATG 58.019 37.500 0.00 0.00 37.03 2.39
3109 7173 5.754406 TCGAAAGAAGTTTTCAACGGTATGA 59.246 36.000 0.00 0.00 37.03 2.15
3110 7174 6.425721 TCGAAAGAAGTTTTCAACGGTATGAT 59.574 34.615 0.00 0.00 37.03 2.45
3111 7175 7.041644 TCGAAAGAAGTTTTCAACGGTATGATT 60.042 33.333 0.00 0.00 37.03 2.57
3112 7176 7.589954 CGAAAGAAGTTTTCAACGGTATGATTT 59.410 33.333 0.00 0.00 36.23 2.17
3113 7177 9.244799 GAAAGAAGTTTTCAACGGTATGATTTT 57.755 29.630 0.00 0.00 36.23 1.82
3114 7178 9.594478 AAAGAAGTTTTCAACGGTATGATTTTT 57.406 25.926 0.00 0.00 36.23 1.94
3115 7179 8.797266 AGAAGTTTTCAACGGTATGATTTTTC 57.203 30.769 0.00 0.00 36.23 2.29
3116 7180 8.410141 AGAAGTTTTCAACGGTATGATTTTTCA 58.590 29.630 0.00 0.00 36.23 2.69
3117 7181 8.574196 AAGTTTTCAACGGTATGATTTTTCAG 57.426 30.769 0.00 0.00 36.23 3.02
3118 7182 7.712797 AGTTTTCAACGGTATGATTTTTCAGT 58.287 30.769 0.00 0.00 36.23 3.41
3119 7183 8.842280 AGTTTTCAACGGTATGATTTTTCAGTA 58.158 29.630 0.00 0.00 36.23 2.74
3120 7184 9.453325 GTTTTCAACGGTATGATTTTTCAGTAA 57.547 29.630 0.00 0.00 0.00 2.24
3124 7188 9.619316 TCAACGGTATGATTTTTCAGTAAAATG 57.381 29.630 2.67 0.00 44.46 2.32
3125 7189 9.619316 CAACGGTATGATTTTTCAGTAAAATGA 57.381 29.630 2.67 0.00 44.46 2.57
3138 7202 9.906660 TTTCAGTAAAATGATTTATGTGTGGAC 57.093 29.630 0.00 0.00 33.76 4.02
3139 7203 7.747888 TCAGTAAAATGATTTATGTGTGGACG 58.252 34.615 0.00 0.00 33.76 4.79
3140 7204 6.468956 CAGTAAAATGATTTATGTGTGGACGC 59.531 38.462 0.00 0.00 33.76 5.19
3141 7205 5.384063 AAAATGATTTATGTGTGGACGCA 57.616 34.783 0.00 0.00 40.98 5.24
3142 7206 4.355543 AATGATTTATGTGTGGACGCAC 57.644 40.909 8.95 8.95 39.39 5.34
3143 7207 3.052455 TGATTTATGTGTGGACGCACT 57.948 42.857 15.95 5.63 39.39 4.40
3144 7208 4.195225 TGATTTATGTGTGGACGCACTA 57.805 40.909 15.95 4.51 39.39 2.74
3145 7209 3.930229 TGATTTATGTGTGGACGCACTAC 59.070 43.478 15.95 3.69 39.39 2.73
3153 7217 2.498078 TGTGGACGCACTACATTATGGA 59.502 45.455 0.00 0.00 35.15 3.41
3155 7219 4.127171 GTGGACGCACTACATTATGGAAT 58.873 43.478 0.00 0.00 0.00 3.01
3180 7244 1.551883 GGAGTAGTTTTCGCCCTGGTA 59.448 52.381 0.00 0.00 0.00 3.25
3184 7248 2.403252 AGTTTTCGCCCTGGTATCTG 57.597 50.000 0.00 0.00 0.00 2.90
3226 7291 8.854614 AGGAATTTGCAATAGGATCAGTATAC 57.145 34.615 0.00 0.00 0.00 1.47
3232 7297 5.307976 TGCAATAGGATCAGTATACTGCCTT 59.692 40.000 27.18 19.50 43.46 4.35
3245 7310 2.330216 ACTGCCTTAACAGACTGGACT 58.670 47.619 7.51 0.00 40.25 3.85
3273 7338 2.698855 AGTGGCGATGCTGAAATACT 57.301 45.000 0.00 0.00 0.00 2.12
3334 7399 1.993956 TTACATGCTGCCAAAGTGGT 58.006 45.000 0.00 0.00 40.46 4.16
3341 7406 0.523072 CTGCCAAAGTGGTGATTCCG 59.477 55.000 0.00 0.00 40.46 4.30
3361 7426 4.356162 CGAAATACGGCAGACTAATTCG 57.644 45.455 0.00 0.00 38.46 3.34
3367 7432 4.119442 ACGGCAGACTAATTCGTAACAT 57.881 40.909 0.00 0.00 32.03 2.71
3373 7438 6.961554 GGCAGACTAATTCGTAACATTGAAAG 59.038 38.462 0.00 0.00 0.00 2.62
3393 7458 6.767902 TGAAAGTCTTCAGTTTACAGCAAGAT 59.232 34.615 0.00 0.00 36.62 2.40
3398 7463 7.550906 AGTCTTCAGTTTACAGCAAGATTATCC 59.449 37.037 0.00 0.00 0.00 2.59
3467 7532 3.316029 GGTGGGGCTAATCACCGA 58.684 61.111 0.00 0.00 43.11 4.69
3469 7534 0.182775 GGTGGGGCTAATCACCGAAT 59.817 55.000 0.00 0.00 43.11 3.34
3470 7535 1.418637 GGTGGGGCTAATCACCGAATA 59.581 52.381 0.00 0.00 43.11 1.75
3514 7595 3.380004 TCTTTTCACTGAACGTTGGCAAT 59.620 39.130 5.00 0.00 0.00 3.56
3547 7628 3.621268 TCAATGCTAAACACAGCGATACC 59.379 43.478 0.00 0.00 44.88 2.73
3548 7629 2.753055 TGCTAAACACAGCGATACCA 57.247 45.000 0.00 0.00 44.88 3.25
3643 7724 1.588674 TCGTCAAGAAACCGCACAAT 58.411 45.000 0.00 0.00 0.00 2.71
3655 7736 2.658422 CACAATGCAAGGCACCCC 59.342 61.111 0.00 0.00 43.04 4.95
3664 7745 2.766925 AAGGCACCCCAACTGCAGA 61.767 57.895 23.35 0.00 36.27 4.26
3673 7754 0.179020 CCAACTGCAGACCACAAGGA 60.179 55.000 23.35 0.00 38.69 3.36
3678 7759 0.249868 TGCAGACCACAAGGAAGACG 60.250 55.000 0.00 0.00 38.69 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 3.088532 AGTTGCTTGGTCTGTTTGAACA 58.911 40.909 0.00 0.00 41.27 3.18
14 15 3.128589 TCAGTTGCTTGGTCTGTTTGAAC 59.871 43.478 0.00 0.00 0.00 3.18
15 16 3.351740 TCAGTTGCTTGGTCTGTTTGAA 58.648 40.909 0.00 0.00 0.00 2.69
16 17 2.997980 TCAGTTGCTTGGTCTGTTTGA 58.002 42.857 0.00 0.00 0.00 2.69
17 18 3.781079 TTCAGTTGCTTGGTCTGTTTG 57.219 42.857 0.00 0.00 0.00 2.93
18 19 3.429410 GCTTTCAGTTGCTTGGTCTGTTT 60.429 43.478 0.00 0.00 0.00 2.83
19 20 2.099756 GCTTTCAGTTGCTTGGTCTGTT 59.900 45.455 0.00 0.00 0.00 3.16
20 21 1.678101 GCTTTCAGTTGCTTGGTCTGT 59.322 47.619 0.00 0.00 0.00 3.41
21 22 1.677576 TGCTTTCAGTTGCTTGGTCTG 59.322 47.619 0.00 0.00 0.00 3.51
22 23 1.678101 GTGCTTTCAGTTGCTTGGTCT 59.322 47.619 0.00 0.00 0.00 3.85
23 24 1.269257 GGTGCTTTCAGTTGCTTGGTC 60.269 52.381 0.00 0.00 0.00 4.02
24 25 0.746659 GGTGCTTTCAGTTGCTTGGT 59.253 50.000 0.00 0.00 0.00 3.67
25 26 1.035139 AGGTGCTTTCAGTTGCTTGG 58.965 50.000 0.00 0.00 0.00 3.61
26 27 3.141398 TCTAGGTGCTTTCAGTTGCTTG 58.859 45.455 0.00 0.00 0.00 4.01
27 28 3.492102 TCTAGGTGCTTTCAGTTGCTT 57.508 42.857 0.00 0.00 0.00 3.91
28 29 3.710209 ATCTAGGTGCTTTCAGTTGCT 57.290 42.857 0.00 0.00 0.00 3.91
29 30 4.938226 AGTAATCTAGGTGCTTTCAGTTGC 59.062 41.667 0.00 0.00 0.00 4.17
30 31 5.934625 ACAGTAATCTAGGTGCTTTCAGTTG 59.065 40.000 0.00 0.00 0.00 3.16
31 32 6.115448 ACAGTAATCTAGGTGCTTTCAGTT 57.885 37.500 0.00 0.00 0.00 3.16
32 33 5.746990 ACAGTAATCTAGGTGCTTTCAGT 57.253 39.130 0.00 0.00 0.00 3.41
33 34 6.166279 TGAACAGTAATCTAGGTGCTTTCAG 58.834 40.000 0.00 0.00 0.00 3.02
34 35 6.109156 TGAACAGTAATCTAGGTGCTTTCA 57.891 37.500 0.00 0.00 0.00 2.69
35 36 7.041372 TGTTTGAACAGTAATCTAGGTGCTTTC 60.041 37.037 0.00 0.00 34.30 2.62
36 37 6.770785 TGTTTGAACAGTAATCTAGGTGCTTT 59.229 34.615 0.00 0.00 34.30 3.51
37 38 6.296026 TGTTTGAACAGTAATCTAGGTGCTT 58.704 36.000 0.00 0.00 34.30 3.91
38 39 5.865085 TGTTTGAACAGTAATCTAGGTGCT 58.135 37.500 0.00 0.00 34.30 4.40
39 40 6.743575 ATGTTTGAACAGTAATCTAGGTGC 57.256 37.500 2.77 0.00 43.04 5.01
40 41 8.099364 ACAATGTTTGAACAGTAATCTAGGTG 57.901 34.615 2.77 0.00 43.04 4.00
41 42 8.691661 AACAATGTTTGAACAGTAATCTAGGT 57.308 30.769 2.77 0.00 43.04 3.08
42 43 9.965824 AAAACAATGTTTGAACAGTAATCTAGG 57.034 29.630 12.50 0.00 43.04 3.02
45 46 9.736023 GAGAAAACAATGTTTGAACAGTAATCT 57.264 29.630 12.50 7.75 43.04 2.40
46 47 9.736023 AGAGAAAACAATGTTTGAACAGTAATC 57.264 29.630 12.50 3.00 43.04 1.75
81 82 9.329913 CGGAAACATGAAATAGTTTAGTTTCTG 57.670 33.333 18.91 17.51 41.62 3.02
87 88 9.893305 ACTTTTCGGAAACATGAAATAGTTTAG 57.107 29.630 1.96 0.00 38.01 1.85
106 107 3.983344 CAGCAAGGGATTCAAACTTTTCG 59.017 43.478 0.00 0.00 0.00 3.46
110 111 1.270550 CGCAGCAAGGGATTCAAACTT 59.729 47.619 0.00 0.00 0.00 2.66
156 157 0.990818 AGGGGATCTTTGGGCTCTCC 60.991 60.000 0.00 0.00 0.00 3.71
165 166 1.272147 GCAGTTGGTGAGGGGATCTTT 60.272 52.381 0.00 0.00 0.00 2.52
328 338 2.086610 TGATGATCGATGGGTCTGGA 57.913 50.000 0.54 0.00 0.00 3.86
332 342 2.213499 GTGGTTGATGATCGATGGGTC 58.787 52.381 0.54 0.00 0.00 4.46
342 352 1.337118 GCTTTTGGGGTGGTTGATGA 58.663 50.000 0.00 0.00 0.00 2.92
352 362 0.392706 GTGGGTTCTTGCTTTTGGGG 59.607 55.000 0.00 0.00 0.00 4.96
356 366 1.119684 GGGTGTGGGTTCTTGCTTTT 58.880 50.000 0.00 0.00 0.00 2.27
377 390 3.833070 AGATTCTTACCACCACTCGACTT 59.167 43.478 0.00 0.00 0.00 3.01
378 391 3.432378 AGATTCTTACCACCACTCGACT 58.568 45.455 0.00 0.00 0.00 4.18
391 412 4.224370 AGCTAACCCACGGAAAGATTCTTA 59.776 41.667 0.00 0.00 0.00 2.10
415 436 1.911057 CCTGGAGGACTGGTTTTTCC 58.089 55.000 0.00 0.00 37.39 3.13
416 437 1.202940 AGCCTGGAGGACTGGTTTTTC 60.203 52.381 0.00 0.00 40.14 2.29
417 438 0.853530 AGCCTGGAGGACTGGTTTTT 59.146 50.000 0.00 0.00 40.14 1.94
418 439 0.402121 GAGCCTGGAGGACTGGTTTT 59.598 55.000 0.00 0.00 40.14 2.43
419 440 1.492993 GGAGCCTGGAGGACTGGTTT 61.493 60.000 0.00 0.00 40.14 3.27
420 441 1.920835 GGAGCCTGGAGGACTGGTT 60.921 63.158 0.00 0.00 40.14 3.67
421 442 2.284995 GGAGCCTGGAGGACTGGT 60.285 66.667 0.00 0.00 40.14 4.00
422 443 1.492133 TTTGGAGCCTGGAGGACTGG 61.492 60.000 0.00 0.00 40.89 4.00
423 444 0.035630 CTTTGGAGCCTGGAGGACTG 60.036 60.000 0.00 0.00 37.39 3.51
424 445 0.474660 ACTTTGGAGCCTGGAGGACT 60.475 55.000 0.00 0.00 37.39 3.85
425 446 0.402121 AACTTTGGAGCCTGGAGGAC 59.598 55.000 0.00 0.00 37.39 3.85
426 447 0.401738 CAACTTTGGAGCCTGGAGGA 59.598 55.000 0.00 0.00 37.39 3.71
427 448 0.111253 ACAACTTTGGAGCCTGGAGG 59.889 55.000 0.00 0.00 38.53 4.30
428 449 1.986882 AACAACTTTGGAGCCTGGAG 58.013 50.000 0.00 0.00 0.00 3.86
429 450 2.031120 CAAACAACTTTGGAGCCTGGA 58.969 47.619 0.00 0.00 34.20 3.86
430 451 2.514205 CAAACAACTTTGGAGCCTGG 57.486 50.000 0.00 0.00 34.20 4.45
440 461 7.174946 CCTGATAATGTAGTCACCAAACAACTT 59.825 37.037 0.00 0.00 0.00 2.66
444 465 5.249622 TCCCTGATAATGTAGTCACCAAACA 59.750 40.000 0.00 0.00 0.00 2.83
445 466 5.585047 GTCCCTGATAATGTAGTCACCAAAC 59.415 44.000 0.00 0.00 0.00 2.93
466 487 8.691797 TGGTGCTTAAGAATTAATTATTGGTCC 58.308 33.333 16.44 14.15 40.24 4.46
469 490 9.301153 GTGTGGTGCTTAAGAATTAATTATTGG 57.699 33.333 16.44 10.71 40.24 3.16
477 498 3.756434 GCCAGTGTGGTGCTTAAGAATTA 59.244 43.478 6.67 0.00 40.46 1.40
478 499 2.558359 GCCAGTGTGGTGCTTAAGAATT 59.442 45.455 6.67 0.00 40.46 2.17
479 500 2.162681 GCCAGTGTGGTGCTTAAGAAT 58.837 47.619 6.67 0.00 40.46 2.40
480 501 1.604604 GCCAGTGTGGTGCTTAAGAA 58.395 50.000 6.67 0.00 40.46 2.52
481 502 0.602638 CGCCAGTGTGGTGCTTAAGA 60.603 55.000 6.67 0.00 41.59 2.10
482 503 1.868997 CGCCAGTGTGGTGCTTAAG 59.131 57.895 0.00 0.00 41.59 1.85
490 722 2.906897 AACCAAGCGCCAGTGTGG 60.907 61.111 2.29 6.97 41.55 4.17
495 727 1.915614 CTACAGCAACCAAGCGCCAG 61.916 60.000 2.29 0.00 40.15 4.85
498 730 2.176792 GCTACAGCAACCAAGCGC 59.823 61.111 0.00 0.00 41.59 5.92
506 738 0.248661 GATCTCTCGCGCTACAGCAA 60.249 55.000 5.56 0.00 42.21 3.91
507 739 1.356979 GATCTCTCGCGCTACAGCA 59.643 57.895 5.56 0.00 42.21 4.41
508 740 0.932585 GTGATCTCTCGCGCTACAGC 60.933 60.000 5.56 0.00 37.78 4.40
509 741 0.378610 TGTGATCTCTCGCGCTACAG 59.621 55.000 5.56 0.00 34.50 2.74
510 742 0.378610 CTGTGATCTCTCGCGCTACA 59.621 55.000 5.56 0.00 34.50 2.74
512 744 1.867865 CTACTGTGATCTCTCGCGCTA 59.132 52.381 5.56 0.00 34.50 4.26
513 745 0.660488 CTACTGTGATCTCTCGCGCT 59.340 55.000 5.56 0.00 34.50 5.92
514 746 0.378962 ACTACTGTGATCTCTCGCGC 59.621 55.000 0.00 0.00 34.50 6.86
516 748 1.746220 ACCACTACTGTGATCTCTCGC 59.254 52.381 0.00 0.00 46.55 5.03
517 749 4.035792 CCTAACCACTACTGTGATCTCTCG 59.964 50.000 0.00 0.00 46.55 4.04
518 750 4.202070 GCCTAACCACTACTGTGATCTCTC 60.202 50.000 0.00 0.00 46.55 3.20
519 751 3.702045 GCCTAACCACTACTGTGATCTCT 59.298 47.826 0.00 0.00 46.55 3.10
521 753 3.195825 GTGCCTAACCACTACTGTGATCT 59.804 47.826 0.00 0.00 46.55 2.75
522 754 3.195825 AGTGCCTAACCACTACTGTGATC 59.804 47.826 0.00 0.00 46.55 2.92
526 758 2.563179 CTGAGTGCCTAACCACTACTGT 59.437 50.000 0.00 0.00 45.55 3.55
545 807 6.202379 CACAAGATCACATATCCTGCTAACTG 59.798 42.308 0.00 0.00 0.00 3.16
549 811 5.876651 ACACAAGATCACATATCCTGCTA 57.123 39.130 0.00 0.00 0.00 3.49
554 816 6.404734 GGGTGAAAACACAAGATCACATATCC 60.405 42.308 7.03 0.00 43.02 2.59
555 817 6.404734 GGGGTGAAAACACAAGATCACATATC 60.405 42.308 7.03 0.00 43.02 1.63
556 818 5.418840 GGGGTGAAAACACAAGATCACATAT 59.581 40.000 7.03 0.00 43.02 1.78
557 819 4.764823 GGGGTGAAAACACAAGATCACATA 59.235 41.667 7.03 0.00 43.02 2.29
558 820 3.573967 GGGGTGAAAACACAAGATCACAT 59.426 43.478 7.03 0.00 43.02 3.21
560 822 3.004734 CAGGGGTGAAAACACAAGATCAC 59.995 47.826 0.00 0.00 41.06 3.06
582 1151 4.829064 TTGCATAAATATCGACTTGGGC 57.171 40.909 0.00 0.00 0.00 5.36
583 1152 7.706179 ACAAATTTGCATAAATATCGACTTGGG 59.294 33.333 18.12 0.00 35.50 4.12
584 1153 8.633075 ACAAATTTGCATAAATATCGACTTGG 57.367 30.769 18.12 0.00 35.50 3.61
605 1484 2.221169 CTGAGTAGGCACTGCAACAAA 58.779 47.619 2.82 0.00 45.83 2.83
608 1487 0.603707 TGCTGAGTAGGCACTGCAAC 60.604 55.000 2.82 0.51 45.83 4.17
626 1505 5.686159 AGAAGATCAAGACAGCAAAAGTG 57.314 39.130 0.00 0.00 0.00 3.16
627 1506 7.807977 TTTAGAAGATCAAGACAGCAAAAGT 57.192 32.000 0.00 0.00 0.00 2.66
628 1507 9.688592 ATTTTTAGAAGATCAAGACAGCAAAAG 57.311 29.630 0.00 0.00 0.00 2.27
641 1520 7.499232 TCATTCCGGGAGAATTTTTAGAAGATC 59.501 37.037 0.00 0.00 42.86 2.75
653 1532 6.013379 TCAGCTATTATTCATTCCGGGAGAAT 60.013 38.462 17.02 17.02 46.54 2.40
654 1533 5.306937 TCAGCTATTATTCATTCCGGGAGAA 59.693 40.000 0.00 3.93 39.32 2.87
655 1534 4.838423 TCAGCTATTATTCATTCCGGGAGA 59.162 41.667 0.00 0.00 0.00 3.71
681 1662 8.785946 CAATTTCCTGGCAAACTGAAATAAAAT 58.214 29.630 11.76 0.00 0.00 1.82
682 1663 7.772757 ACAATTTCCTGGCAAACTGAAATAAAA 59.227 29.630 11.76 0.00 0.00 1.52
683 1664 7.226325 CACAATTTCCTGGCAAACTGAAATAAA 59.774 33.333 11.76 0.00 0.00 1.40
686 1667 5.058490 CACAATTTCCTGGCAAACTGAAAT 58.942 37.500 6.94 7.65 0.00 2.17
690 1671 3.125316 CACACAATTTCCTGGCAAACTG 58.875 45.455 0.00 0.00 0.00 3.16
694 1675 3.902881 AAACACACAATTTCCTGGCAA 57.097 38.095 0.00 0.00 0.00 4.52
695 1676 3.902881 AAAACACACAATTTCCTGGCA 57.097 38.095 0.00 0.00 0.00 4.92
696 1677 6.536941 TCTTTAAAAACACACAATTTCCTGGC 59.463 34.615 0.00 0.00 0.00 4.85
700 1681 8.257830 TGGTTCTTTAAAAACACACAATTTCC 57.742 30.769 12.29 0.00 0.00 3.13
773 4674 4.286032 GGCCTTTTCATACTTCCCCTTTTT 59.714 41.667 0.00 0.00 0.00 1.94
774 4675 3.838317 GGCCTTTTCATACTTCCCCTTTT 59.162 43.478 0.00 0.00 0.00 2.27
775 4676 3.441101 GGCCTTTTCATACTTCCCCTTT 58.559 45.455 0.00 0.00 0.00 3.11
776 4677 2.292257 GGGCCTTTTCATACTTCCCCTT 60.292 50.000 0.84 0.00 0.00 3.95
777 4678 1.288037 GGGCCTTTTCATACTTCCCCT 59.712 52.381 0.84 0.00 0.00 4.79
778 4679 1.006639 TGGGCCTTTTCATACTTCCCC 59.993 52.381 4.53 0.00 0.00 4.81
779 4680 2.379005 CTGGGCCTTTTCATACTTCCC 58.621 52.381 4.53 0.00 0.00 3.97
780 4681 2.025321 TCCTGGGCCTTTTCATACTTCC 60.025 50.000 4.53 0.00 0.00 3.46
781 4682 3.282885 CTCCTGGGCCTTTTCATACTTC 58.717 50.000 4.53 0.00 0.00 3.01
782 4683 2.024941 CCTCCTGGGCCTTTTCATACTT 60.025 50.000 4.53 0.00 0.00 2.24
783 4684 1.566231 CCTCCTGGGCCTTTTCATACT 59.434 52.381 4.53 0.00 0.00 2.12
784 4685 2.058593 CCTCCTGGGCCTTTTCATAC 57.941 55.000 4.53 0.00 0.00 2.39
811 4712 3.832615 AGAAGTGTTTCGTGGTAGGTT 57.167 42.857 0.00 0.00 38.38 3.50
825 4726 4.142687 CCGGGCAAAAATGTAGTAGAAGTG 60.143 45.833 0.00 0.00 0.00 3.16
828 4729 2.750712 GCCGGGCAAAAATGTAGTAGAA 59.249 45.455 15.62 0.00 0.00 2.10
830 4731 2.088423 TGCCGGGCAAAAATGTAGTAG 58.912 47.619 21.55 0.00 34.76 2.57
832 4733 0.601057 GTGCCGGGCAAAAATGTAGT 59.399 50.000 25.70 0.00 41.47 2.73
834 4735 0.827925 TGGTGCCGGGCAAAAATGTA 60.828 50.000 25.70 2.16 41.47 2.29
835 4736 2.136878 TGGTGCCGGGCAAAAATGT 61.137 52.632 25.70 0.00 41.47 2.71
836 4737 1.667510 GTGGTGCCGGGCAAAAATG 60.668 57.895 25.70 0.00 41.47 2.32
844 4745 4.404098 GTAGGTGGTGGTGCCGGG 62.404 72.222 2.18 0.00 41.21 5.73
845 4746 2.798148 GAAGTAGGTGGTGGTGCCGG 62.798 65.000 0.00 0.00 41.21 6.13
846 4747 1.375523 GAAGTAGGTGGTGGTGCCG 60.376 63.158 0.00 0.00 41.21 5.69
847 4748 0.036294 GAGAAGTAGGTGGTGGTGCC 60.036 60.000 0.00 0.00 37.90 5.01
867 4769 2.124277 AAAAATACAGGGGCGGAGAC 57.876 50.000 0.00 0.00 0.00 3.36
883 4785 9.203421 GTTTCTCTTCCAACTTTTTCTGAAAAA 57.797 29.630 22.74 22.74 37.99 1.94
884 4786 7.817478 GGTTTCTCTTCCAACTTTTTCTGAAAA 59.183 33.333 11.33 11.33 33.86 2.29
885 4787 7.039363 TGGTTTCTCTTCCAACTTTTTCTGAAA 60.039 33.333 0.00 0.00 0.00 2.69
887 4789 5.949354 TGGTTTCTCTTCCAACTTTTTCTGA 59.051 36.000 0.00 0.00 0.00 3.27
888 4790 6.036470 GTGGTTTCTCTTCCAACTTTTTCTG 58.964 40.000 0.00 0.00 35.38 3.02
889 4791 5.127194 GGTGGTTTCTCTTCCAACTTTTTCT 59.873 40.000 0.00 0.00 38.29 2.52
890 4792 5.105513 TGGTGGTTTCTCTTCCAACTTTTTC 60.106 40.000 0.00 0.00 41.52 2.29
891 4793 4.775253 TGGTGGTTTCTCTTCCAACTTTTT 59.225 37.500 0.00 0.00 41.52 1.94
892 4794 4.159693 GTGGTGGTTTCTCTTCCAACTTTT 59.840 41.667 0.00 0.00 41.52 2.27
893 4795 3.699538 GTGGTGGTTTCTCTTCCAACTTT 59.300 43.478 0.00 0.00 41.52 2.66
894 4796 3.288092 GTGGTGGTTTCTCTTCCAACTT 58.712 45.455 0.00 0.00 41.52 2.66
895 4797 2.422945 GGTGGTGGTTTCTCTTCCAACT 60.423 50.000 0.00 0.00 41.52 3.16
896 4798 1.954382 GGTGGTGGTTTCTCTTCCAAC 59.046 52.381 0.00 0.00 41.35 3.77
897 4799 1.566703 TGGTGGTGGTTTCTCTTCCAA 59.433 47.619 0.00 0.00 35.38 3.53
898 4800 1.217916 TGGTGGTGGTTTCTCTTCCA 58.782 50.000 0.00 0.00 0.00 3.53
899 4801 2.358322 TTGGTGGTGGTTTCTCTTCC 57.642 50.000 0.00 0.00 0.00 3.46
900 4802 2.361119 GGTTTGGTGGTGGTTTCTCTTC 59.639 50.000 0.00 0.00 0.00 2.87
901 4803 2.384828 GGTTTGGTGGTGGTTTCTCTT 58.615 47.619 0.00 0.00 0.00 2.85
1190 5139 2.480845 GTTCTAGCACCAACGAAGTGT 58.519 47.619 0.00 0.00 45.00 3.55
1193 5142 1.068474 CCGTTCTAGCACCAACGAAG 58.932 55.000 14.10 0.00 46.70 3.79
1292 5243 0.670546 AGTCACTGCCGAAATCACCG 60.671 55.000 0.00 0.00 0.00 4.94
1311 5262 1.583495 ATCTCCGACGCGTGAACAGA 61.583 55.000 20.70 12.95 0.00 3.41
1331 5282 2.279935 TTACACCCCGTTCTGCAAAT 57.720 45.000 0.00 0.00 0.00 2.32
1364 5315 5.289595 GGAAAGGATCAAAACAACCAGAAC 58.710 41.667 0.00 0.00 0.00 3.01
1493 5444 8.632679 CCGTACTAAAATTGGTATACAGGACTA 58.367 37.037 5.01 0.00 0.00 2.59
1494 5445 7.124750 ACCGTACTAAAATTGGTATACAGGACT 59.875 37.037 5.01 0.00 0.00 3.85
1495 5446 7.223387 CACCGTACTAAAATTGGTATACAGGAC 59.777 40.741 5.01 0.00 0.00 3.85
1496 5447 7.123997 TCACCGTACTAAAATTGGTATACAGGA 59.876 37.037 5.01 0.00 0.00 3.86
1497 5448 7.267128 TCACCGTACTAAAATTGGTATACAGG 58.733 38.462 5.01 0.00 0.00 4.00
1498 5449 8.761497 CATCACCGTACTAAAATTGGTATACAG 58.239 37.037 5.01 0.00 0.00 2.74
1500 5451 7.712205 ACCATCACCGTACTAAAATTGGTATAC 59.288 37.037 0.00 0.00 33.38 1.47
1501 5452 7.794041 ACCATCACCGTACTAAAATTGGTATA 58.206 34.615 0.00 0.00 33.38 1.47
1502 5453 6.655930 ACCATCACCGTACTAAAATTGGTAT 58.344 36.000 0.00 0.00 33.38 2.73
1503 5454 6.052405 ACCATCACCGTACTAAAATTGGTA 57.948 37.500 0.00 0.00 33.38 3.25
1504 5455 4.913784 ACCATCACCGTACTAAAATTGGT 58.086 39.130 0.00 0.00 0.00 3.67
1614 5640 4.116961 CGCATCATGCCATCAAAAGAAAT 58.883 39.130 3.38 0.00 41.12 2.17
1635 5661 5.825905 TCAAATGCATCAAACAAACATCG 57.174 34.783 0.00 0.00 0.00 3.84
1665 5691 9.546909 CATGTATTTCATCAACTTTCACACTAC 57.453 33.333 0.00 0.00 34.09 2.73
1752 5778 0.313987 CGGCTGGGTTTTCTCCAAAC 59.686 55.000 0.00 0.00 43.78 2.93
1765 5791 3.042733 TAGGTCCCAATGCGGCTGG 62.043 63.158 0.00 0.81 0.00 4.85
1786 5812 3.554324 TGCGTCAACAAACTCTTGTAGAC 59.446 43.478 0.00 0.00 45.25 2.59
1787 5813 3.554324 GTGCGTCAACAAACTCTTGTAGA 59.446 43.478 0.00 0.00 45.25 2.59
1915 5941 5.927281 TCCCTCATAACCACTACAAGTAC 57.073 43.478 0.00 0.00 0.00 2.73
1918 5944 5.422214 AGTTCCCTCATAACCACTACAAG 57.578 43.478 0.00 0.00 0.00 3.16
1954 5981 6.678900 GCATATAAAGAGTTCCAAAGCCACTG 60.679 42.308 0.00 0.00 0.00 3.66
2035 6063 2.774439 AAACCACAAAGATGCGTGTC 57.226 45.000 0.00 0.00 0.00 3.67
2048 6076 1.484653 ACTGGAAAAGGGCAAAACCAC 59.515 47.619 0.00 0.00 42.05 4.16
2108 6136 1.133025 GCGGAATCACCATCAACCTTG 59.867 52.381 0.00 0.00 38.90 3.61
2131 6159 2.679639 GCATGGTCTGTAATCCCAACGA 60.680 50.000 0.00 0.00 0.00 3.85
2292 6325 0.897621 CCAAATGGTCCTGAAAGCCC 59.102 55.000 0.00 0.00 0.00 5.19
2355 6389 1.620822 CAAAGTTGGTTCCCTGGGAG 58.379 55.000 16.38 0.00 31.21 4.30
2367 6401 3.613737 CACTTTCAACAGCACCAAAGTTG 59.386 43.478 0.00 0.00 42.90 3.16
2403 6437 2.126071 ACCGGCGAGTTGATGTCG 60.126 61.111 9.30 0.00 40.50 4.35
2496 6530 3.652057 TCCTTGACAATGGATTCCTCC 57.348 47.619 3.95 0.00 42.45 4.30
2497 6531 5.195940 TCAATCCTTGACAATGGATTCCTC 58.804 41.667 20.22 0.00 46.61 3.71
2587 6627 3.755526 TTGATGATCCAGCCGCCCG 62.756 63.158 0.00 0.00 0.00 6.13
2649 6689 5.612865 GCAGAATTTCGAGTACTTCTTGTG 58.387 41.667 0.00 0.00 0.00 3.33
2663 6703 2.933260 GTCCTCTTCCTCGCAGAATTTC 59.067 50.000 0.00 0.00 34.09 2.17
2718 6758 2.049063 AGTGTCGAAGCGCAGACC 60.049 61.111 21.84 15.22 36.61 3.85
2719 6759 0.734253 ATGAGTGTCGAAGCGCAGAC 60.734 55.000 11.47 16.52 37.85 3.51
2852 6892 8.012957 AGGAACTCGAGTGATATACAGATTTT 57.987 34.615 20.85 0.00 0.00 1.82
2899 6939 6.393990 TCAGAACAGAGCTTAAATCAGAGAC 58.606 40.000 0.00 0.00 0.00 3.36
2976 7016 4.323417 TGGGCACACTACACTATGAAAAG 58.677 43.478 0.00 0.00 0.00 2.27
2977 7017 4.359434 TGGGCACACTACACTATGAAAA 57.641 40.909 0.00 0.00 0.00 2.29
2979 7019 3.370421 CCATGGGCACACTACACTATGAA 60.370 47.826 2.85 0.00 0.00 2.57
2980 7020 2.170397 CCATGGGCACACTACACTATGA 59.830 50.000 2.85 0.00 0.00 2.15
2994 7058 6.775594 AGTTAAATCTAGAAAACCATGGGC 57.224 37.500 18.09 2.23 0.00 5.36
2995 7059 8.802267 TCAAAGTTAAATCTAGAAAACCATGGG 58.198 33.333 18.09 0.00 0.00 4.00
2996 7060 9.626045 GTCAAAGTTAAATCTAGAAAACCATGG 57.374 33.333 11.19 11.19 0.00 3.66
2997 7061 9.626045 GGTCAAAGTTAAATCTAGAAAACCATG 57.374 33.333 0.00 4.81 0.00 3.66
2999 7063 8.754991 TGGTCAAAGTTAAATCTAGAAAACCA 57.245 30.769 0.00 0.00 0.00 3.67
3015 7079 9.487790 CATGTTGGTTAAATTTATGGTCAAAGT 57.512 29.630 0.00 0.00 0.00 2.66
3016 7080 8.934825 CCATGTTGGTTAAATTTATGGTCAAAG 58.065 33.333 0.00 0.00 31.35 2.77
3017 7081 7.880195 CCCATGTTGGTTAAATTTATGGTCAAA 59.120 33.333 11.23 0.00 35.17 2.69
3018 7082 7.390027 CCCATGTTGGTTAAATTTATGGTCAA 58.610 34.615 11.23 6.22 35.17 3.18
3019 7083 6.575254 GCCCATGTTGGTTAAATTTATGGTCA 60.575 38.462 11.23 4.14 35.17 4.02
3020 7084 5.815222 GCCCATGTTGGTTAAATTTATGGTC 59.185 40.000 11.23 0.00 35.17 4.02
3021 7085 5.625656 CGCCCATGTTGGTTAAATTTATGGT 60.626 40.000 11.23 0.00 35.17 3.55
3022 7086 4.808364 CGCCCATGTTGGTTAAATTTATGG 59.192 41.667 0.00 3.07 35.17 2.74
3023 7087 5.655488 TCGCCCATGTTGGTTAAATTTATG 58.345 37.500 0.00 0.00 35.17 1.90
3024 7088 5.923733 TCGCCCATGTTGGTTAAATTTAT 57.076 34.783 0.00 0.00 35.17 1.40
3025 7089 5.923733 ATCGCCCATGTTGGTTAAATTTA 57.076 34.783 0.00 0.00 35.17 1.40
3026 7090 4.817318 ATCGCCCATGTTGGTTAAATTT 57.183 36.364 0.00 0.00 35.17 1.82
3027 7091 4.502962 CAATCGCCCATGTTGGTTAAATT 58.497 39.130 0.00 0.00 35.17 1.82
3028 7092 3.678529 GCAATCGCCCATGTTGGTTAAAT 60.679 43.478 0.00 0.00 35.17 1.40
3029 7093 2.353208 GCAATCGCCCATGTTGGTTAAA 60.353 45.455 0.00 0.00 35.17 1.52
3030 7094 1.203523 GCAATCGCCCATGTTGGTTAA 59.796 47.619 0.00 0.00 35.17 2.01
3031 7095 0.814457 GCAATCGCCCATGTTGGTTA 59.186 50.000 0.00 0.00 35.17 2.85
3032 7096 1.591183 GCAATCGCCCATGTTGGTT 59.409 52.632 0.00 0.00 35.17 3.67
3033 7097 2.699768 CGCAATCGCCCATGTTGGT 61.700 57.895 0.00 0.00 35.17 3.67
3034 7098 2.102749 CGCAATCGCCCATGTTGG 59.897 61.111 0.00 0.00 37.25 3.77
3035 7099 2.102749 CCGCAATCGCCCATGTTG 59.897 61.111 0.00 0.00 33.11 3.33
3036 7100 3.825611 GCCGCAATCGCCCATGTT 61.826 61.111 0.00 0.00 33.11 2.71
3045 7109 3.654020 GATGCTCCCGCCGCAATC 61.654 66.667 0.00 0.00 41.26 2.67
3046 7110 4.488136 TGATGCTCCCGCCGCAAT 62.488 61.111 0.00 0.00 41.26 3.56
3050 7114 2.087462 TATCTGTGATGCTCCCGCCG 62.087 60.000 0.00 0.00 34.43 6.46
3051 7115 0.106708 TTATCTGTGATGCTCCCGCC 59.893 55.000 0.00 0.00 34.43 6.13
3052 7116 1.202580 AGTTATCTGTGATGCTCCCGC 60.203 52.381 0.00 0.00 0.00 6.13
3053 7117 2.898729 AGTTATCTGTGATGCTCCCG 57.101 50.000 0.00 0.00 0.00 5.14
3054 7118 4.517285 TCAAAGTTATCTGTGATGCTCCC 58.483 43.478 0.00 0.00 33.44 4.30
3055 7119 6.690194 ATTCAAAGTTATCTGTGATGCTCC 57.310 37.500 0.00 0.00 37.71 4.70
3056 7120 6.904011 CGAATTCAAAGTTATCTGTGATGCTC 59.096 38.462 6.22 0.00 37.71 4.26
3057 7121 6.372659 ACGAATTCAAAGTTATCTGTGATGCT 59.627 34.615 6.22 0.00 37.71 3.79
3058 7122 6.546395 ACGAATTCAAAGTTATCTGTGATGC 58.454 36.000 6.22 0.00 37.71 3.91
3061 7125 8.592155 CGAATACGAATTCAAAGTTATCTGTGA 58.408 33.333 6.22 0.00 41.44 3.58
3062 7126 8.592155 TCGAATACGAATTCAAAGTTATCTGTG 58.408 33.333 6.22 0.00 45.74 3.66
3063 7127 8.697846 TCGAATACGAATTCAAAGTTATCTGT 57.302 30.769 6.22 0.00 45.74 3.41
3079 7143 6.349426 CGTTGAAAACTTCTTTCGAATACGA 58.651 36.000 0.00 0.00 46.99 3.43
3080 7144 5.558888 CCGTTGAAAACTTCTTTCGAATACG 59.441 40.000 0.00 0.00 46.99 3.06
3081 7145 6.424683 ACCGTTGAAAACTTCTTTCGAATAC 58.575 36.000 0.00 0.00 46.99 1.89
3082 7146 6.607735 ACCGTTGAAAACTTCTTTCGAATA 57.392 33.333 0.00 0.00 46.99 1.75
3083 7147 5.494632 ACCGTTGAAAACTTCTTTCGAAT 57.505 34.783 0.00 0.00 46.99 3.34
3084 7148 4.950434 ACCGTTGAAAACTTCTTTCGAA 57.050 36.364 0.00 0.00 46.99 3.71
3085 7149 5.754406 TCATACCGTTGAAAACTTCTTTCGA 59.246 36.000 0.00 0.00 46.99 3.71
3086 7150 5.981174 TCATACCGTTGAAAACTTCTTTCG 58.019 37.500 0.00 0.00 46.99 3.46
3087 7151 8.797266 AAATCATACCGTTGAAAACTTCTTTC 57.203 30.769 0.00 0.00 46.99 2.62
3088 7152 9.594478 AAAAATCATACCGTTGAAAACTTCTTT 57.406 25.926 0.00 0.00 46.99 2.52
3089 7153 9.244799 GAAAAATCATACCGTTGAAAACTTCTT 57.755 29.630 0.00 0.00 46.99 2.52
3090 7154 8.410141 TGAAAAATCATACCGTTGAAAACTTCT 58.590 29.630 0.00 0.00 46.99 2.85
3091 7155 8.568732 TGAAAAATCATACCGTTGAAAACTTC 57.431 30.769 0.00 0.00 46.99 3.01
3092 7156 8.194769 ACTGAAAAATCATACCGTTGAAAACTT 58.805 29.630 0.00 0.00 46.99 2.66
3093 7157 7.712797 ACTGAAAAATCATACCGTTGAAAACT 58.287 30.769 0.00 0.00 46.99 2.66
3094 7158 7.924103 ACTGAAAAATCATACCGTTGAAAAC 57.076 32.000 0.00 0.00 45.31 2.43
3098 7162 9.619316 CATTTTACTGAAAAATCATACCGTTGA 57.381 29.630 0.00 0.00 44.27 3.18
3099 7163 9.619316 TCATTTTACTGAAAAATCATACCGTTG 57.381 29.630 0.00 0.00 44.27 4.10
3112 7176 9.906660 GTCCACACATAAATCATTTTACTGAAA 57.093 29.630 0.00 0.00 30.33 2.69
3113 7177 8.233868 CGTCCACACATAAATCATTTTACTGAA 58.766 33.333 0.00 0.00 30.33 3.02
3114 7178 7.625395 GCGTCCACACATAAATCATTTTACTGA 60.625 37.037 0.00 0.00 30.33 3.41
3115 7179 6.468956 GCGTCCACACATAAATCATTTTACTG 59.531 38.462 0.00 0.00 30.33 2.74
3116 7180 6.150307 TGCGTCCACACATAAATCATTTTACT 59.850 34.615 0.00 0.00 30.33 2.24
3117 7181 6.250527 GTGCGTCCACACATAAATCATTTTAC 59.749 38.462 0.00 0.00 41.67 2.01
3118 7182 6.150307 AGTGCGTCCACACATAAATCATTTTA 59.850 34.615 0.00 0.00 44.53 1.52
3119 7183 5.048083 AGTGCGTCCACACATAAATCATTTT 60.048 36.000 0.00 0.00 44.53 1.82
3120 7184 4.458989 AGTGCGTCCACACATAAATCATTT 59.541 37.500 0.00 0.00 44.53 2.32
3121 7185 4.009675 AGTGCGTCCACACATAAATCATT 58.990 39.130 0.00 0.00 44.53 2.57
3122 7186 3.609853 AGTGCGTCCACACATAAATCAT 58.390 40.909 0.00 0.00 44.53 2.45
3123 7187 3.052455 AGTGCGTCCACACATAAATCA 57.948 42.857 0.00 0.00 44.53 2.57
3124 7188 3.930229 TGTAGTGCGTCCACACATAAATC 59.070 43.478 0.00 0.00 44.53 2.17
3125 7189 3.932822 TGTAGTGCGTCCACACATAAAT 58.067 40.909 0.00 0.00 44.53 1.40
3126 7190 3.388345 TGTAGTGCGTCCACACATAAA 57.612 42.857 0.00 0.00 44.53 1.40
3127 7191 3.603158 ATGTAGTGCGTCCACACATAA 57.397 42.857 8.86 0.00 44.53 1.90
3128 7192 3.603158 AATGTAGTGCGTCCACACATA 57.397 42.857 10.17 0.00 44.53 2.29
3129 7193 2.472695 AATGTAGTGCGTCCACACAT 57.527 45.000 0.00 2.40 44.53 3.21
3130 7194 3.258228 CATAATGTAGTGCGTCCACACA 58.742 45.455 0.00 0.31 44.53 3.72
3131 7195 2.607635 CCATAATGTAGTGCGTCCACAC 59.392 50.000 0.00 0.00 44.53 3.82
3132 7196 2.498078 TCCATAATGTAGTGCGTCCACA 59.502 45.455 0.00 0.00 44.53 4.17
3133 7197 3.173668 TCCATAATGTAGTGCGTCCAC 57.826 47.619 0.00 0.00 42.39 4.02
3134 7198 3.897141 TTCCATAATGTAGTGCGTCCA 57.103 42.857 0.00 0.00 0.00 4.02
3135 7199 3.498397 CCATTCCATAATGTAGTGCGTCC 59.502 47.826 0.00 0.00 40.84 4.79
3136 7200 4.377021 TCCATTCCATAATGTAGTGCGTC 58.623 43.478 0.00 0.00 40.84 5.19
3137 7201 4.380531 CTCCATTCCATAATGTAGTGCGT 58.619 43.478 0.00 0.00 40.84 5.24
3138 7202 3.748048 CCTCCATTCCATAATGTAGTGCG 59.252 47.826 0.00 0.00 40.84 5.34
3139 7203 4.074970 CCCTCCATTCCATAATGTAGTGC 58.925 47.826 0.00 0.00 40.84 4.40
3140 7204 5.072329 ACTCCCTCCATTCCATAATGTAGTG 59.928 44.000 0.00 0.00 40.84 2.74
3141 7205 5.227593 ACTCCCTCCATTCCATAATGTAGT 58.772 41.667 0.00 0.00 40.84 2.73
3142 7206 5.832539 ACTCCCTCCATTCCATAATGTAG 57.167 43.478 0.00 0.00 40.84 2.74
3143 7207 6.390504 ACTACTCCCTCCATTCCATAATGTA 58.609 40.000 0.00 0.00 40.84 2.29
3144 7208 5.227593 ACTACTCCCTCCATTCCATAATGT 58.772 41.667 0.00 0.00 40.84 2.71
3145 7209 5.832539 ACTACTCCCTCCATTCCATAATG 57.167 43.478 0.00 0.00 41.90 1.90
3153 7217 2.355818 GGCGAAAACTACTCCCTCCATT 60.356 50.000 0.00 0.00 0.00 3.16
3155 7219 0.611714 GGCGAAAACTACTCCCTCCA 59.388 55.000 0.00 0.00 0.00 3.86
3180 7244 1.891150 CCAGAAAAACTGCAGCCAGAT 59.109 47.619 15.27 0.00 44.52 2.90
3184 7248 0.600057 CCTCCAGAAAAACTGCAGCC 59.400 55.000 15.27 0.00 44.52 4.85
3226 7291 2.693069 CAGTCCAGTCTGTTAAGGCAG 58.307 52.381 0.00 0.00 37.81 4.85
3232 7297 0.321671 GGCAGCAGTCCAGTCTGTTA 59.678 55.000 0.00 0.00 37.70 2.41
3273 7338 8.504812 TTGCTAATGTTATGAATTAGTCTGCA 57.495 30.769 5.38 0.00 39.04 4.41
3292 7357 9.730420 GTAAACTGATTTTGAAGAGTTTGCTAA 57.270 29.630 0.00 0.00 38.70 3.09
3293 7358 8.898761 TGTAAACTGATTTTGAAGAGTTTGCTA 58.101 29.630 0.00 0.00 39.98 3.49
3341 7406 6.254157 TGTTACGAATTAGTCTGCCGTATTTC 59.746 38.462 0.00 0.00 35.94 2.17
3361 7426 9.651718 CTGTAAACTGAAGACTTTCAATGTTAC 57.348 33.333 0.00 8.76 42.48 2.50
3367 7432 6.597672 TCTTGCTGTAAACTGAAGACTTTCAA 59.402 34.615 0.00 0.00 42.48 2.69
3373 7438 7.334421 TGGATAATCTTGCTGTAAACTGAAGAC 59.666 37.037 0.00 0.00 0.00 3.01
3393 7458 7.743116 TGGGTCTTCTGTATAACTTGGATAA 57.257 36.000 0.00 0.00 0.00 1.75
3398 7463 7.921786 TTTGATGGGTCTTCTGTATAACTTG 57.078 36.000 0.00 0.00 0.00 3.16
3514 7595 7.390823 TGTGTTTAGCATTGATGTTAGTCCTA 58.609 34.615 0.00 0.00 0.00 2.94
3547 7628 8.335532 TCTAAACCTGGATGAACAATAGTTTG 57.664 34.615 0.00 0.00 38.30 2.93
3548 7629 9.178758 GATCTAAACCTGGATGAACAATAGTTT 57.821 33.333 0.00 0.00 38.30 2.66
3594 7675 2.315176 ACCAAATGCTTGTGCCACTTA 58.685 42.857 0.00 0.00 38.71 2.24
3637 7718 2.047939 GGGTGCCTTGCATTGTGC 60.048 61.111 0.00 0.00 41.91 4.57
3643 7724 2.521465 CAGTTGGGGTGCCTTGCA 60.521 61.111 0.00 0.00 35.60 4.08
3655 7736 1.605710 CTTCCTTGTGGTCTGCAGTTG 59.394 52.381 14.67 0.00 34.23 3.16
3664 7745 1.122019 AGGCTCGTCTTCCTTGTGGT 61.122 55.000 0.00 0.00 34.23 4.16
3673 7754 0.107945 GGCATGAGAAGGCTCGTCTT 60.108 55.000 0.00 0.00 44.33 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.