Multiple sequence alignment - TraesCS6B01G184600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G184600 chr6B 100.000 4438 0 0 1 4438 207451130 207455567 0.000000e+00 8196.0
1 TraesCS6B01G184600 chr6A 91.901 2630 155 36 1845 4438 145188865 145191472 0.000000e+00 3624.0
2 TraesCS6B01G184600 chr6A 90.030 1003 67 24 592 1586 145187138 145188115 0.000000e+00 1267.0
3 TraesCS6B01G184600 chr6A 87.963 648 63 14 1 640 145186587 145187227 0.000000e+00 750.0
4 TraesCS6B01G184600 chr6D 92.672 1965 125 11 1845 3801 118634760 118632807 0.000000e+00 2813.0
5 TraesCS6B01G184600 chr6D 91.093 1628 119 16 4 1608 118636888 118635264 0.000000e+00 2180.0
6 TraesCS6B01G184600 chr6D 90.550 582 33 13 3873 4438 118632786 118632211 0.000000e+00 750.0
7 TraesCS6B01G184600 chr6D 90.141 71 7 0 1721 1791 118634848 118634778 4.730000e-15 93.5
8 TraesCS6B01G184600 chr6D 82.222 90 13 2 621 709 388409886 388409799 1.710000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G184600 chr6B 207451130 207455567 4437 False 8196.000000 8196 100.000000 1 4438 1 chr6B.!!$F1 4437
1 TraesCS6B01G184600 chr6A 145186587 145191472 4885 False 1880.333333 3624 89.964667 1 4438 3 chr6A.!!$F1 4437
2 TraesCS6B01G184600 chr6D 118632211 118636888 4677 True 1459.125000 2813 91.114000 4 4438 4 chr6D.!!$R2 4434

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
960 974 0.168128 CAACGGCCCAAACTTCGATC 59.832 55.0 0.0 0.0 0.0 3.69 F
1826 2381 0.250252 TGCGTCACATGCCTCTTTGA 60.250 50.0 0.0 0.0 0.0 2.69 F
2318 2874 0.107897 ACTCGGTGTGAACTTGTGCA 60.108 50.0 0.0 0.0 0.0 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1836 2391 0.033781 ATTGGCAACTGCGCATGTTT 59.966 45.0 12.24 1.15 43.26 2.83 R
2795 3352 0.249826 AATTGCCAAACACCAAGCCG 60.250 50.0 0.00 0.00 0.00 5.52 R
3761 4321 0.299895 CACATCGCATCGACTTCAGC 59.700 55.0 0.00 0.00 39.18 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 5.995565 TCTCTCTGGTTTTCTTTATCGGA 57.004 39.130 0.00 0.00 0.00 4.55
61 62 7.947282 TGGTTTTCTTTATCGGATTTTCACTT 58.053 30.769 0.00 0.00 0.00 3.16
96 99 2.840651 TCTTTTGGGGTTTTTGGCTTCA 59.159 40.909 0.00 0.00 0.00 3.02
107 110 4.442375 TTTTGGCTTCACGTTTTCTTCA 57.558 36.364 0.00 0.00 0.00 3.02
152 155 7.809546 TTTTTGAATGGTTTTATTTGGGTCC 57.190 32.000 0.00 0.00 0.00 4.46
162 165 9.343539 TGGTTTTATTTGGGTCCTTTATTTTTG 57.656 29.630 0.00 0.00 0.00 2.44
171 174 8.080363 TGGGTCCTTTATTTTTGTTTAACACT 57.920 30.769 0.00 0.00 0.00 3.55
441 445 7.219154 TGTGTCAAACATTTTTCGAATACACAC 59.781 33.333 0.00 3.46 32.36 3.82
478 482 8.441312 TTTTCTTAATGGTACGAAACACTTCT 57.559 30.769 0.00 0.00 29.80 2.85
494 498 6.348621 ACACTTCTTTTAAACTACGCGAAA 57.651 33.333 15.93 0.00 0.00 3.46
732 740 9.340695 TCAACATTTTCTGAAATTATGCTAACG 57.659 29.630 12.46 0.00 33.25 3.18
960 974 0.168128 CAACGGCCCAAACTTCGATC 59.832 55.000 0.00 0.00 0.00 3.69
977 991 2.806244 CGATCTTTTGGGTTGACTCGTT 59.194 45.455 0.00 0.00 0.00 3.85
1225 1251 2.029844 GCTCAACTGACCTCGCCAC 61.030 63.158 0.00 0.00 0.00 5.01
1352 1378 1.029947 CGGTAGACCAATTGGCACCC 61.030 60.000 24.79 16.89 39.32 4.61
1403 1429 1.079543 CCCTGAGAGTGCGTTCTGG 60.080 63.158 0.00 0.00 33.59 3.86
1542 1569 5.244178 ACTGAACTGAAGACTCGGTAGATTT 59.756 40.000 0.00 0.00 40.49 2.17
1548 1575 4.523173 TGAAGACTCGGTAGATTTGTCAGT 59.477 41.667 0.00 0.00 0.00 3.41
1575 1603 0.810031 GCGATGACCGGCAATACACT 60.810 55.000 0.00 0.00 39.04 3.55
1586 1614 6.354130 ACCGGCAATACACTTCTTAATATGT 58.646 36.000 0.00 0.00 0.00 2.29
1588 1616 7.440255 ACCGGCAATACACTTCTTAATATGTAC 59.560 37.037 0.00 0.00 30.69 2.90
1598 1630 8.744011 CACTTCTTAATATGTACTGTACTTCGC 58.256 37.037 17.98 0.00 0.00 4.70
1609 1641 7.745015 TGTACTGTACTTCGCATAATTTTTCC 58.255 34.615 17.98 0.00 0.00 3.13
1610 1642 6.811253 ACTGTACTTCGCATAATTTTTCCA 57.189 33.333 0.00 0.00 0.00 3.53
1611 1643 7.391148 ACTGTACTTCGCATAATTTTTCCAT 57.609 32.000 0.00 0.00 0.00 3.41
1613 1645 6.033341 TGTACTTCGCATAATTTTTCCATGC 58.967 36.000 0.00 0.81 41.29 4.06
1614 1646 5.070770 ACTTCGCATAATTTTTCCATGCA 57.929 34.783 10.02 0.00 44.19 3.96
1694 2146 9.729281 AAAAAGGTTATTTATCAACGTAGGAGA 57.271 29.630 0.00 0.00 0.00 3.71
1695 2147 8.713737 AAAGGTTATTTATCAACGTAGGAGAC 57.286 34.615 0.00 0.00 0.00 3.36
1697 2149 7.490000 AGGTTATTTATCAACGTAGGAGACTG 58.510 38.462 0.00 0.00 43.88 3.51
1699 2151 5.934402 ATTTATCAACGTAGGAGACTGGT 57.066 39.130 0.00 0.00 43.88 4.00
1700 2152 5.733620 TTTATCAACGTAGGAGACTGGTT 57.266 39.130 0.00 0.00 43.88 3.67
1701 2153 6.839124 TTTATCAACGTAGGAGACTGGTTA 57.161 37.500 0.00 0.00 43.88 2.85
1702 2154 4.715527 ATCAACGTAGGAGACTGGTTAC 57.284 45.455 0.00 0.00 43.88 2.50
1704 2156 3.504906 TCAACGTAGGAGACTGGTTACTG 59.495 47.826 0.00 0.00 43.88 2.74
1705 2157 3.151912 ACGTAGGAGACTGGTTACTGT 57.848 47.619 0.00 0.00 43.88 3.55
1706 2158 3.494332 ACGTAGGAGACTGGTTACTGTT 58.506 45.455 0.00 0.00 43.88 3.16
1707 2159 3.893813 ACGTAGGAGACTGGTTACTGTTT 59.106 43.478 0.00 0.00 43.88 2.83
1709 2161 5.163374 ACGTAGGAGACTGGTTACTGTTTTT 60.163 40.000 0.00 0.00 43.88 1.94
1791 2346 2.997485 GCAGTTTGCGAAATCCTTCT 57.003 45.000 0.00 0.00 31.71 2.85
1793 2348 3.748298 GCAGTTTGCGAAATCCTTCTAC 58.252 45.455 0.00 0.00 31.71 2.59
1795 2350 4.670221 GCAGTTTGCGAAATCCTTCTACTG 60.670 45.833 0.00 0.00 31.71 2.74
1796 2351 4.690748 CAGTTTGCGAAATCCTTCTACTGA 59.309 41.667 0.00 0.00 32.24 3.41
1797 2352 5.179368 CAGTTTGCGAAATCCTTCTACTGAA 59.821 40.000 0.00 0.00 32.24 3.02
1798 2353 5.179555 AGTTTGCGAAATCCTTCTACTGAAC 59.820 40.000 0.00 0.00 0.00 3.18
1799 2354 4.265904 TGCGAAATCCTTCTACTGAACA 57.734 40.909 0.00 0.00 0.00 3.18
1800 2355 4.637276 TGCGAAATCCTTCTACTGAACAA 58.363 39.130 0.00 0.00 0.00 2.83
1801 2356 4.451096 TGCGAAATCCTTCTACTGAACAAC 59.549 41.667 0.00 0.00 0.00 3.32
1804 2359 5.926542 CGAAATCCTTCTACTGAACAACTGA 59.073 40.000 0.00 0.00 0.00 3.41
1805 2360 6.128795 CGAAATCCTTCTACTGAACAACTGAC 60.129 42.308 0.00 0.00 0.00 3.51
1806 2361 5.808366 ATCCTTCTACTGAACAACTGACA 57.192 39.130 0.00 0.00 0.00 3.58
1807 2362 5.808366 TCCTTCTACTGAACAACTGACAT 57.192 39.130 0.00 0.00 0.00 3.06
1808 2363 5.541845 TCCTTCTACTGAACAACTGACATG 58.458 41.667 0.00 0.00 0.00 3.21
1809 2364 4.153117 CCTTCTACTGAACAACTGACATGC 59.847 45.833 0.00 0.00 0.00 4.06
1810 2365 3.317150 TCTACTGAACAACTGACATGCG 58.683 45.455 0.00 0.00 0.00 4.73
1811 2366 1.953559 ACTGAACAACTGACATGCGT 58.046 45.000 0.00 0.00 0.00 5.24
1812 2367 1.867233 ACTGAACAACTGACATGCGTC 59.133 47.619 0.00 0.00 42.93 5.19
1824 2379 3.254629 ATGCGTCACATGCCTCTTT 57.745 47.368 0.00 0.00 37.70 2.52
1825 2380 0.806868 ATGCGTCACATGCCTCTTTG 59.193 50.000 0.00 0.00 37.70 2.77
1826 2381 0.250252 TGCGTCACATGCCTCTTTGA 60.250 50.000 0.00 0.00 0.00 2.69
1827 2382 1.089920 GCGTCACATGCCTCTTTGAT 58.910 50.000 0.00 0.00 0.00 2.57
1828 2383 1.063174 GCGTCACATGCCTCTTTGATC 59.937 52.381 0.00 0.00 0.00 2.92
1829 2384 2.349590 CGTCACATGCCTCTTTGATCA 58.650 47.619 0.00 0.00 0.00 2.92
1830 2385 2.743664 CGTCACATGCCTCTTTGATCAA 59.256 45.455 3.38 3.38 0.00 2.57
1831 2386 3.376234 CGTCACATGCCTCTTTGATCAAT 59.624 43.478 9.40 0.00 0.00 2.57
1832 2387 4.669318 GTCACATGCCTCTTTGATCAATG 58.331 43.478 9.40 11.92 0.00 2.82
1833 2388 4.157289 GTCACATGCCTCTTTGATCAATGT 59.843 41.667 17.97 10.99 0.00 2.71
1834 2389 5.355071 GTCACATGCCTCTTTGATCAATGTA 59.645 40.000 17.97 5.05 0.00 2.29
1835 2390 6.039047 GTCACATGCCTCTTTGATCAATGTAT 59.961 38.462 17.97 6.82 0.00 2.29
1836 2391 7.227314 GTCACATGCCTCTTTGATCAATGTATA 59.773 37.037 17.97 0.00 0.00 1.47
1837 2392 7.774625 TCACATGCCTCTTTGATCAATGTATAA 59.225 33.333 17.97 6.61 0.00 0.98
1838 2393 8.407832 CACATGCCTCTTTGATCAATGTATAAA 58.592 33.333 17.97 0.00 0.00 1.40
1839 2394 8.408601 ACATGCCTCTTTGATCAATGTATAAAC 58.591 33.333 17.97 6.82 0.00 2.01
1840 2395 7.936496 TGCCTCTTTGATCAATGTATAAACA 57.064 32.000 17.97 8.72 40.69 2.83
1842 2397 8.407832 TGCCTCTTTGATCAATGTATAAACATG 58.592 33.333 17.97 0.00 45.79 3.21
1843 2398 7.380602 GCCTCTTTGATCAATGTATAAACATGC 59.619 37.037 17.97 5.31 45.79 4.06
1889 2444 3.988976 AGCTAATTCTCCAGCAAGTCA 57.011 42.857 1.03 0.00 40.36 3.41
1899 2454 2.682856 TCCAGCAAGTCACTGTTTGTTC 59.317 45.455 0.00 0.00 33.09 3.18
1908 2463 4.062991 GTCACTGTTTGTTCCCTAATCGT 58.937 43.478 0.00 0.00 0.00 3.73
2141 2697 1.201343 GCTTCTCAACCGCTCGATAC 58.799 55.000 0.00 0.00 0.00 2.24
2147 2703 2.093890 TCAACCGCTCGATACTACCAA 58.906 47.619 0.00 0.00 0.00 3.67
2318 2874 0.107897 ACTCGGTGTGAACTTGTGCA 60.108 50.000 0.00 0.00 0.00 4.57
2325 2881 3.066621 GGTGTGAACTTGTGCATTTCTCA 59.933 43.478 0.00 0.00 0.00 3.27
2337 2893 2.621998 GCATTTCTCATAGCATGTGCCT 59.378 45.455 0.57 0.00 43.38 4.75
2369 2925 8.345565 AGTTATATTCATCTCCGTTTGAATTGC 58.654 33.333 3.75 0.00 41.52 3.56
2376 2932 7.047891 TCATCTCCGTTTGAATTGCTACTTAT 58.952 34.615 0.00 0.00 0.00 1.73
2391 2947 4.453819 GCTACTTATCCTCAACATCATGCC 59.546 45.833 0.00 0.00 0.00 4.40
2409 2965 3.979911 TGCCATGATAACCTTTCCATGT 58.020 40.909 0.00 0.00 35.79 3.21
2424 2980 4.537135 TCCATGTCTGAACAGGTTCTAC 57.463 45.455 12.86 11.07 39.20 2.59
2432 2988 9.265434 ATGTCTGAACAGGTTCTACTGGAACAA 62.265 40.741 12.86 0.00 45.01 2.83
2497 3053 4.605354 CGTCGTTGCGATGGTTGTATTATC 60.605 45.833 3.12 0.00 38.96 1.75
2517 3073 1.751437 GGGGTAAGTTCATCTGGCAC 58.249 55.000 0.00 0.00 0.00 5.01
2523 3079 5.455326 GGGTAAGTTCATCTGGCACTGATAT 60.455 44.000 0.00 0.00 45.19 1.63
2524 3080 6.239600 GGGTAAGTTCATCTGGCACTGATATA 60.240 42.308 0.00 0.00 45.19 0.86
2557 3113 6.796426 TCTTCGACCTCTACAAATATGACAG 58.204 40.000 0.00 0.00 0.00 3.51
2567 3123 8.988064 TCTACAAATATGACAGTGAGAAGAAC 57.012 34.615 0.00 0.00 0.00 3.01
2568 3124 6.712241 ACAAATATGACAGTGAGAAGAACG 57.288 37.500 0.00 0.00 0.00 3.95
2589 3145 4.051922 CGGCTTATGAACTGCCTAGTTAG 58.948 47.826 0.00 0.00 46.79 2.34
2603 3159 7.658982 ACTGCCTAGTTAGGTTTAACAAAGTAC 59.341 37.037 7.03 0.00 45.42 2.73
2604 3160 7.738847 TGCCTAGTTAGGTTTAACAAAGTACT 58.261 34.615 7.03 0.00 45.42 2.73
2605 3161 7.658575 TGCCTAGTTAGGTTTAACAAAGTACTG 59.341 37.037 0.00 0.00 45.42 2.74
2606 3162 7.658982 GCCTAGTTAGGTTTAACAAAGTACTGT 59.341 37.037 0.00 0.00 45.42 3.55
2607 3163 8.985805 CCTAGTTAGGTTTAACAAAGTACTGTG 58.014 37.037 11.74 11.74 41.33 3.66
2622 3178 8.826710 CAAAGTACTGTGTTAGACAAGAATCAA 58.173 33.333 4.74 0.00 32.80 2.57
2625 3181 9.561069 AGTACTGTGTTAGACAAGAATCAATTT 57.439 29.630 0.00 0.00 32.80 1.82
2626 3182 9.813080 GTACTGTGTTAGACAAGAATCAATTTC 57.187 33.333 0.00 0.00 32.80 2.17
2634 3190 3.176708 CAAGAATCAATTTCAGGCTGCG 58.823 45.455 10.34 0.00 36.75 5.18
2656 3212 4.168760 GCTGAAAGGCATGAATGTACAAC 58.831 43.478 0.00 0.00 0.00 3.32
2660 3216 7.629222 GCTGAAAGGCATGAATGTACAACTATT 60.629 37.037 0.00 0.00 0.00 1.73
2689 3245 5.411831 TCAGTTCAGTCAATGAGCACTAT 57.588 39.130 0.00 0.00 41.33 2.12
2700 3256 5.582269 TCAATGAGCACTATTTTCTTCTCCG 59.418 40.000 0.00 0.00 0.00 4.63
2709 3265 6.201806 CACTATTTTCTTCTCCGGTCATCATC 59.798 42.308 0.00 0.00 0.00 2.92
2711 3267 0.385751 TCTTCTCCGGTCATCATCGC 59.614 55.000 0.00 0.00 0.00 4.58
2721 3277 3.488216 CGGTCATCATCGCGATCTGATAT 60.488 47.826 25.35 11.24 31.05 1.63
2773 3330 6.778108 TGTCCTTTTACTTGTCGTTTCTTTC 58.222 36.000 0.00 0.00 0.00 2.62
2778 3335 8.989980 CCTTTTACTTGTCGTTTCTTTCTCTAT 58.010 33.333 0.00 0.00 0.00 1.98
2782 3339 6.522054 ACTTGTCGTTTCTTTCTCTATTGGA 58.478 36.000 0.00 0.00 0.00 3.53
2785 3342 4.326548 GTCGTTTCTTTCTCTATTGGACCG 59.673 45.833 0.00 0.00 0.00 4.79
2821 3378 4.052159 TGGTGTTTGGCAATTGTTACAG 57.948 40.909 7.40 0.00 0.00 2.74
2826 3383 6.037098 GTGTTTGGCAATTGTTACAGTGTAA 58.963 36.000 11.75 11.75 0.00 2.41
2882 3439 4.501921 GGCTATTCGTACTCCAAGTTAACG 59.498 45.833 0.00 0.00 32.97 3.18
2889 3446 7.566858 TCGTACTCCAAGTTAACGTAAAATC 57.433 36.000 0.00 0.00 33.34 2.17
2893 3450 5.180680 ACTCCAAGTTAACGTAAAATCTGCC 59.819 40.000 0.00 0.00 0.00 4.85
2904 3461 4.142622 CGTAAAATCTGCCAATGCTCTTCA 60.143 41.667 0.00 0.00 38.71 3.02
2913 3470 3.426525 GCCAATGCTCTTCAAAAGAAACG 59.573 43.478 0.00 0.00 37.02 3.60
2923 3480 7.322938 GCTCTTCAAAAGAAACGTAAATGTACC 59.677 37.037 0.00 0.00 37.02 3.34
2924 3481 8.211116 TCTTCAAAAGAAACGTAAATGTACCA 57.789 30.769 0.00 0.00 33.83 3.25
2925 3482 8.675504 TCTTCAAAAGAAACGTAAATGTACCAA 58.324 29.630 0.00 0.00 33.83 3.67
2958 3515 9.554395 TCAGTAATCATGTTCTGTCAGTTTTTA 57.446 29.630 0.00 0.00 0.00 1.52
3042 3599 3.243359 TGTTGCTGAGGATTCCCTTTT 57.757 42.857 0.00 0.00 44.53 2.27
3062 3619 0.319297 GCAGGCCAAAGTTGAAGCAG 60.319 55.000 5.01 0.00 0.00 4.24
3176 3733 2.267961 GCCGTACAACCCCAGAGG 59.732 66.667 0.00 0.00 43.78 3.69
3382 3940 3.945921 TCAGTATACACCTTCCTCAGACG 59.054 47.826 5.50 0.00 0.00 4.18
3416 3974 0.748729 TTGAACCGTTCCTTGGCGTT 60.749 50.000 8.80 0.00 0.00 4.84
3490 4048 1.160329 CCGGATCATGAAACCTCGGC 61.160 60.000 16.57 0.00 0.00 5.54
3528 4086 2.200067 CTGTAAATCGCTGAGGCAGAG 58.800 52.381 0.00 0.00 38.60 3.35
3581 4139 1.325476 CCAATTTCAGGGCCAGGCTC 61.325 60.000 12.43 7.53 0.00 4.70
3590 4148 0.255890 GGGCCAGGCTCTGTAAATGA 59.744 55.000 12.43 0.00 0.00 2.57
3633 4191 4.569564 CGTGTTAACTGGGCCTTATTAGTC 59.430 45.833 4.53 0.00 0.00 2.59
3708 4266 1.719780 CGTACACTCTTTCTTGGCGTC 59.280 52.381 0.00 0.00 0.00 5.19
3761 4321 1.197721 GAACTGCAAAGTGGTCATCGG 59.802 52.381 0.00 0.00 0.00 4.18
3802 4366 5.533903 GTGACAAATATGAGCTTGGATGGAT 59.466 40.000 0.00 0.00 0.00 3.41
3803 4367 5.766670 TGACAAATATGAGCTTGGATGGATC 59.233 40.000 0.00 0.00 0.00 3.36
3806 4370 2.251409 ATGAGCTTGGATGGATCACG 57.749 50.000 0.00 0.00 31.88 4.35
3811 4388 2.766263 AGCTTGGATGGATCACGAAGTA 59.234 45.455 0.00 0.00 41.61 2.24
3823 4400 1.037493 ACGAAGTAGTGCACACAGGA 58.963 50.000 21.04 0.00 41.94 3.86
3846 4423 4.094684 GAGGTGAACTCGATGGCG 57.905 61.111 0.00 0.00 36.29 5.69
3847 4424 1.519455 GAGGTGAACTCGATGGCGG 60.519 63.158 0.00 0.00 36.29 6.13
3848 4425 3.195698 GGTGAACTCGATGGCGGC 61.196 66.667 0.00 0.00 38.28 6.53
3849 4426 3.554692 GTGAACTCGATGGCGGCG 61.555 66.667 0.51 0.51 38.28 6.46
3909 4490 2.914289 GGCCATCAGTCCAGAGGG 59.086 66.667 0.00 0.00 42.19 4.30
3969 4553 1.306226 AAGGGAAGGGAGGAGACCG 60.306 63.158 0.00 0.00 0.00 4.79
4042 4626 2.610859 GGGCCTGGACTGGGAGAA 60.611 66.667 0.84 0.00 0.00 2.87
4050 4634 3.959991 GACTGGGAGAAGGTGCCGC 62.960 68.421 0.00 0.00 40.42 6.53
4143 4730 4.157120 CGTCGTGGATGGACCCCC 62.157 72.222 0.00 0.00 38.00 5.40
4214 4802 0.450583 TCTGCACCGTCGCTAACTAG 59.549 55.000 0.00 0.00 0.00 2.57
4221 4809 0.525668 CGTCGCTAACTAGGCAGTGG 60.526 60.000 0.00 0.00 34.36 4.00
4224 4812 1.084370 CGCTAACTAGGCAGTGGCAC 61.084 60.000 20.04 10.29 43.71 5.01
4240 4833 8.603203 GCAGTGGCACTATTGTCTCAACAAAA 62.603 42.308 21.59 0.00 43.50 2.44
4272 4870 5.824904 AGCAATGACACCTCAATTATGAC 57.175 39.130 0.00 0.00 0.00 3.06
4297 4895 4.301505 GCCTGAGGCGTGATTTCA 57.698 55.556 8.16 0.00 39.62 2.69
4298 4896 2.555123 GCCTGAGGCGTGATTTCAA 58.445 52.632 8.16 0.00 39.62 2.69
4299 4897 0.881118 GCCTGAGGCGTGATTTCAAA 59.119 50.000 8.16 0.00 39.62 2.69
4300 4898 1.269448 GCCTGAGGCGTGATTTCAAAA 59.731 47.619 8.16 0.00 39.62 2.44
4359 4965 1.799403 GGATTCTGCTGCATCGATCAG 59.201 52.381 16.05 16.05 34.79 2.90
4392 4999 1.602377 GTGAGTTTGTGTAGGTGGTGC 59.398 52.381 0.00 0.00 0.00 5.01
4427 5035 2.187946 CAGGGGAGACATGGTCGC 59.812 66.667 0.00 1.60 37.67 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 8.651589 AACCCCAAAAGAAACCAATTTTAAAA 57.348 26.923 2.51 2.51 0.00 1.52
70 71 3.874193 GCCAAAAACCCCAAAAGAAACCA 60.874 43.478 0.00 0.00 0.00 3.67
459 463 9.934190 GTTTAAAAGAAGTGTTTCGTACCATTA 57.066 29.630 0.00 0.00 38.38 1.90
478 482 8.170999 ACACAAAAATTTCGCGTAGTTTAAAA 57.829 26.923 5.77 0.00 0.00 1.52
960 974 3.127895 TGTCAAACGAGTCAACCCAAAAG 59.872 43.478 0.00 0.00 0.00 2.27
1352 1378 4.154347 GCTCCCCTCCTGTCTGCG 62.154 72.222 0.00 0.00 0.00 5.18
1403 1429 2.641815 AGATCTTATCCCCCTGCATGAC 59.358 50.000 0.00 0.00 0.00 3.06
1477 1503 5.557866 ACAAGTAGAATTACCTTGGTGGAC 58.442 41.667 2.03 0.00 39.71 4.02
1510 1537 5.091261 AGTCTTCAGTTCAGTTGACAACT 57.909 39.130 15.23 15.23 44.06 3.16
1542 1569 0.108662 CATCGCCTACTGCACTGACA 60.109 55.000 0.00 0.00 41.33 3.58
1548 1575 2.494445 CGGTCATCGCCTACTGCA 59.506 61.111 0.00 0.00 41.33 4.41
1562 1590 6.354130 ACATATTAAGAAGTGTATTGCCGGT 58.646 36.000 1.90 0.00 0.00 5.28
1571 1599 9.784680 CGAAGTACAGTACATATTAAGAAGTGT 57.215 33.333 13.37 0.00 0.00 3.55
1586 1614 7.908827 TGGAAAAATTATGCGAAGTACAGTA 57.091 32.000 0.00 0.00 0.00 2.74
1588 1616 6.197096 GCATGGAAAAATTATGCGAAGTACAG 59.803 38.462 0.00 0.00 37.97 2.74
1668 2120 9.729281 TCTCCTACGTTGATAAATAACCTTTTT 57.271 29.630 0.00 0.00 0.00 1.94
1669 2121 9.159364 GTCTCCTACGTTGATAAATAACCTTTT 57.841 33.333 0.00 0.00 0.00 2.27
1670 2122 8.537858 AGTCTCCTACGTTGATAAATAACCTTT 58.462 33.333 0.00 0.00 0.00 3.11
1671 2123 7.980099 CAGTCTCCTACGTTGATAAATAACCTT 59.020 37.037 0.00 0.00 0.00 3.50
1672 2124 7.417570 CCAGTCTCCTACGTTGATAAATAACCT 60.418 40.741 0.00 0.00 0.00 3.50
1673 2125 6.700520 CCAGTCTCCTACGTTGATAAATAACC 59.299 42.308 0.00 0.00 0.00 2.85
1674 2126 7.263496 ACCAGTCTCCTACGTTGATAAATAAC 58.737 38.462 0.00 0.00 0.00 1.89
1675 2127 7.414222 ACCAGTCTCCTACGTTGATAAATAA 57.586 36.000 0.00 0.00 0.00 1.40
1677 2129 5.934402 ACCAGTCTCCTACGTTGATAAAT 57.066 39.130 0.00 0.00 0.00 1.40
1678 2130 5.733620 AACCAGTCTCCTACGTTGATAAA 57.266 39.130 0.00 0.00 0.00 1.40
1679 2131 5.948162 AGTAACCAGTCTCCTACGTTGATAA 59.052 40.000 0.00 0.00 0.00 1.75
1680 2132 5.356190 CAGTAACCAGTCTCCTACGTTGATA 59.644 44.000 0.00 0.00 0.00 2.15
1684 2136 3.494332 ACAGTAACCAGTCTCCTACGTT 58.506 45.455 0.00 0.00 0.00 3.99
1686 2138 4.516365 AAACAGTAACCAGTCTCCTACG 57.484 45.455 0.00 0.00 0.00 3.51
1749 2304 7.957002 TGCTAACCATACCAAGAAATTTTTGA 58.043 30.769 12.02 0.00 0.00 2.69
1756 2311 5.278758 GCAAACTGCTAACCATACCAAGAAA 60.279 40.000 0.00 0.00 40.96 2.52
1786 2341 4.153117 GCATGTCAGTTGTTCAGTAGAAGG 59.847 45.833 0.00 0.00 33.63 3.46
1791 2346 3.057019 GACGCATGTCAGTTGTTCAGTA 58.943 45.455 0.00 0.00 44.82 2.74
1792 2347 1.867233 GACGCATGTCAGTTGTTCAGT 59.133 47.619 0.00 0.00 44.82 3.41
1793 2348 2.584166 GACGCATGTCAGTTGTTCAG 57.416 50.000 0.00 0.00 44.82 3.02
1806 2361 0.806868 CAAAGAGGCATGTGACGCAT 59.193 50.000 0.00 0.00 38.60 4.73
1807 2362 0.250252 TCAAAGAGGCATGTGACGCA 60.250 50.000 0.00 0.00 0.00 5.24
1808 2363 1.063174 GATCAAAGAGGCATGTGACGC 59.937 52.381 0.00 0.00 0.00 5.19
1809 2364 2.349590 TGATCAAAGAGGCATGTGACG 58.650 47.619 0.00 0.00 0.00 4.35
1810 2365 4.157289 ACATTGATCAAAGAGGCATGTGAC 59.843 41.667 17.08 0.00 0.00 3.67
1811 2366 4.338012 ACATTGATCAAAGAGGCATGTGA 58.662 39.130 17.08 0.00 0.00 3.58
1812 2367 4.713824 ACATTGATCAAAGAGGCATGTG 57.286 40.909 17.08 7.86 0.00 3.21
1813 2368 8.408601 GTTTATACATTGATCAAAGAGGCATGT 58.591 33.333 17.08 14.22 0.00 3.21
1814 2369 8.407832 TGTTTATACATTGATCAAAGAGGCATG 58.592 33.333 17.08 9.23 0.00 4.06
1815 2370 8.523915 TGTTTATACATTGATCAAAGAGGCAT 57.476 30.769 17.08 7.20 0.00 4.40
1816 2371 7.936496 TGTTTATACATTGATCAAAGAGGCA 57.064 32.000 17.08 4.81 0.00 4.75
1817 2372 7.380602 GCATGTTTATACATTGATCAAAGAGGC 59.619 37.037 17.08 5.04 42.29 4.70
1818 2373 7.588854 CGCATGTTTATACATTGATCAAAGAGG 59.411 37.037 17.08 7.76 42.29 3.69
1819 2374 7.112565 GCGCATGTTTATACATTGATCAAAGAG 59.887 37.037 17.08 10.40 42.29 2.85
1820 2375 6.912051 GCGCATGTTTATACATTGATCAAAGA 59.088 34.615 17.08 3.91 42.29 2.52
1821 2376 6.692249 TGCGCATGTTTATACATTGATCAAAG 59.308 34.615 13.09 10.92 42.29 2.77
1822 2377 6.558909 TGCGCATGTTTATACATTGATCAAA 58.441 32.000 13.09 0.00 42.29 2.69
1823 2378 6.129053 TGCGCATGTTTATACATTGATCAA 57.871 33.333 5.66 11.26 42.29 2.57
1824 2379 5.296531 ACTGCGCATGTTTATACATTGATCA 59.703 36.000 12.24 0.00 42.29 2.92
1825 2380 5.751680 ACTGCGCATGTTTATACATTGATC 58.248 37.500 12.24 0.00 42.29 2.92
1826 2381 5.756195 ACTGCGCATGTTTATACATTGAT 57.244 34.783 12.24 0.00 42.29 2.57
1827 2382 5.331098 CAACTGCGCATGTTTATACATTGA 58.669 37.500 12.24 0.00 42.29 2.57
1828 2383 4.027458 GCAACTGCGCATGTTTATACATTG 60.027 41.667 12.24 5.25 42.29 2.82
1829 2384 4.104776 GCAACTGCGCATGTTTATACATT 58.895 39.130 12.24 0.00 42.29 2.71
1830 2385 3.489059 GGCAACTGCGCATGTTTATACAT 60.489 43.478 12.24 0.00 43.15 2.29
1831 2386 2.159448 GGCAACTGCGCATGTTTATACA 60.159 45.455 12.24 0.00 43.26 2.29
1832 2387 2.159448 TGGCAACTGCGCATGTTTATAC 60.159 45.455 12.24 7.87 43.26 1.47
1833 2388 2.087646 TGGCAACTGCGCATGTTTATA 58.912 42.857 12.24 3.41 43.26 0.98
1834 2389 0.887247 TGGCAACTGCGCATGTTTAT 59.113 45.000 12.24 0.00 43.26 1.40
1835 2390 0.670706 TTGGCAACTGCGCATGTTTA 59.329 45.000 12.24 4.09 43.26 2.01
1836 2391 0.033781 ATTGGCAACTGCGCATGTTT 59.966 45.000 12.24 1.15 43.26 2.83
1837 2392 0.033781 AATTGGCAACTGCGCATGTT 59.966 45.000 12.24 14.86 43.26 2.71
1838 2393 0.033781 AAATTGGCAACTGCGCATGT 59.966 45.000 12.24 8.79 43.26 3.21
1839 2394 1.136197 CAAAATTGGCAACTGCGCATG 60.136 47.619 12.24 8.95 43.26 4.06
1840 2395 1.149987 CAAAATTGGCAACTGCGCAT 58.850 45.000 12.24 0.00 43.26 4.73
1841 2396 0.103755 TCAAAATTGGCAACTGCGCA 59.896 45.000 10.98 10.98 43.26 6.09
1842 2397 1.070643 GTTCAAAATTGGCAACTGCGC 60.071 47.619 0.00 0.00 43.26 6.09
1843 2398 2.472816 AGTTCAAAATTGGCAACTGCG 58.527 42.857 0.00 0.00 43.26 5.18
1878 2433 2.418368 ACAAACAGTGACTTGCTGGA 57.582 45.000 0.00 0.00 38.22 3.86
1889 2444 4.345859 TGACGATTAGGGAACAAACAGT 57.654 40.909 0.00 0.00 0.00 3.55
1899 2454 4.755411 ACACATGTACTTGACGATTAGGG 58.245 43.478 15.13 0.00 0.00 3.53
1908 2463 6.932400 CCTTGTAAACCTACACATGTACTTGA 59.068 38.462 15.13 0.00 37.77 3.02
1996 2552 4.958581 CCTTAGAAATTGAGGGCCAAGATT 59.041 41.667 6.18 0.00 38.31 2.40
2099 2655 3.390311 AGGTTACGGGATCTGGAATAACC 59.610 47.826 12.84 12.84 41.16 2.85
2141 2697 4.035017 CGTGAAACACTTGCTTTTGGTAG 58.965 43.478 0.00 0.00 35.74 3.18
2147 2703 4.024048 CCAGATACGTGAAACACTTGCTTT 60.024 41.667 0.00 0.00 35.74 3.51
2318 2874 4.160642 TCAGGCACATGCTATGAGAAAT 57.839 40.909 3.48 0.00 41.70 2.17
2325 2881 9.745018 AATATAACTTAATCAGGCACATGCTAT 57.255 29.630 3.48 0.00 41.70 2.97
2367 2923 5.059161 GCATGATGTTGAGGATAAGTAGCA 58.941 41.667 0.00 0.00 0.00 3.49
2369 2925 5.614308 TGGCATGATGTTGAGGATAAGTAG 58.386 41.667 0.00 0.00 0.00 2.57
2391 2947 6.375174 TGTTCAGACATGGAAAGGTTATCATG 59.625 38.462 0.00 0.00 41.74 3.07
2398 2954 2.443255 ACCTGTTCAGACATGGAAAGGT 59.557 45.455 0.00 0.00 34.72 3.50
2404 2960 4.248859 CAGTAGAACCTGTTCAGACATGG 58.751 47.826 12.21 0.00 41.84 3.66
2424 2980 4.520492 AGTACAATTTGAGCCTTGTTCCAG 59.480 41.667 2.79 0.00 36.92 3.86
2432 2988 5.500234 TCAGCAATAGTACAATTTGAGCCT 58.500 37.500 2.79 0.00 0.00 4.58
2439 2995 4.137116 TCCGCTCAGCAATAGTACAATT 57.863 40.909 0.00 0.00 0.00 2.32
2497 3053 0.251916 TGCCAGATGAACTTACCCCG 59.748 55.000 0.00 0.00 0.00 5.73
2537 3093 5.891451 TCACTGTCATATTTGTAGAGGTCG 58.109 41.667 0.00 0.00 0.00 4.79
2548 3104 4.081420 AGCCGTTCTTCTCACTGTCATATT 60.081 41.667 0.00 0.00 0.00 1.28
2557 3113 4.092091 CAGTTCATAAGCCGTTCTTCTCAC 59.908 45.833 0.00 0.00 36.25 3.51
2568 3124 4.381411 CCTAACTAGGCAGTTCATAAGCC 58.619 47.826 5.75 0.00 44.04 4.35
2589 3145 8.200364 TGTCTAACACAGTACTTTGTTAAACC 57.800 34.615 25.03 18.81 37.66 3.27
2603 3159 8.019669 CCTGAAATTGATTCTTGTCTAACACAG 58.980 37.037 0.00 0.00 38.92 3.66
2604 3160 7.522073 GCCTGAAATTGATTCTTGTCTAACACA 60.522 37.037 0.00 0.00 38.92 3.72
2605 3161 6.803807 GCCTGAAATTGATTCTTGTCTAACAC 59.196 38.462 0.00 0.00 38.92 3.32
2606 3162 6.716628 AGCCTGAAATTGATTCTTGTCTAACA 59.283 34.615 0.00 0.00 38.92 2.41
2607 3163 7.025963 CAGCCTGAAATTGATTCTTGTCTAAC 58.974 38.462 0.00 0.00 38.92 2.34
2612 3168 3.366679 CGCAGCCTGAAATTGATTCTTGT 60.367 43.478 0.00 0.00 38.92 3.16
2634 3190 4.082571 AGTTGTACATTCATGCCTTTCAGC 60.083 41.667 0.00 0.00 0.00 4.26
2660 3216 7.654923 GTGCTCATTGACTGAACTGATATATGA 59.345 37.037 0.00 0.00 32.14 2.15
2689 3245 3.521560 CGATGATGACCGGAGAAGAAAA 58.478 45.455 9.46 0.00 0.00 2.29
2700 3256 2.360553 ATCAGATCGCGATGATGACC 57.639 50.000 29.09 10.95 37.47 4.02
2709 3265 8.062231 ACTGTTAGTTTTTATATCAGATCGCG 57.938 34.615 0.00 0.00 0.00 5.87
2742 3298 7.972832 ACGACAAGTAAAAGGACATTATTGA 57.027 32.000 0.00 0.00 0.00 2.57
2746 3302 8.441312 AAGAAACGACAAGTAAAAGGACATTA 57.559 30.769 0.00 0.00 0.00 1.90
2758 3315 6.424207 GTCCAATAGAGAAAGAAACGACAAGT 59.576 38.462 0.00 0.00 0.00 3.16
2773 3330 2.362717 GAGAACCTCCGGTCCAATAGAG 59.637 54.545 0.00 0.00 33.12 2.43
2778 3335 3.801620 GGAGAACCTCCGGTCCAA 58.198 61.111 0.00 0.00 41.08 3.53
2785 3342 2.269241 CCAAGCCGGAGAACCTCC 59.731 66.667 5.05 2.97 46.44 4.30
2793 3350 2.909965 GCCAAACACCAAGCCGGA 60.910 61.111 5.05 0.00 38.63 5.14
2795 3352 0.249826 AATTGCCAAACACCAAGCCG 60.250 50.000 0.00 0.00 0.00 5.52
2797 3354 1.952193 ACAATTGCCAAACACCAAGC 58.048 45.000 5.05 0.00 0.00 4.01
2801 3358 3.801594 CACTGTAACAATTGCCAAACACC 59.198 43.478 5.05 0.00 0.00 4.16
2821 3378 2.034179 GGAACCAGGTGCAGTTTTACAC 59.966 50.000 0.00 0.00 36.03 2.90
2826 3383 1.774856 ACTAGGAACCAGGTGCAGTTT 59.225 47.619 0.00 0.00 0.00 2.66
2882 3439 5.314923 TGAAGAGCATTGGCAGATTTTAC 57.685 39.130 0.00 0.00 44.61 2.01
2889 3446 3.928727 TCTTTTGAAGAGCATTGGCAG 57.071 42.857 0.00 0.00 44.61 4.85
2893 3450 7.678194 TTTACGTTTCTTTTGAAGAGCATTG 57.322 32.000 0.00 0.00 39.88 2.82
2923 3480 9.376075 ACAGAACATGATTACTGAGAACTATTG 57.624 33.333 0.00 0.00 34.88 1.90
2924 3481 9.593134 GACAGAACATGATTACTGAGAACTATT 57.407 33.333 0.00 0.00 34.88 1.73
2925 3482 8.753133 TGACAGAACATGATTACTGAGAACTAT 58.247 33.333 0.00 0.00 34.88 2.12
2958 3515 3.228453 GCCATGATTTCACAGGATCCAT 58.772 45.455 15.82 0.00 0.00 3.41
3042 3599 1.042003 TGCTTCAACTTTGGCCTGCA 61.042 50.000 3.32 0.00 0.00 4.41
3062 3619 5.284864 TCGTCTTGCATCTGATCTTGTATC 58.715 41.667 0.00 0.00 0.00 2.24
3246 3804 1.466360 GCGCAATTAGCTGTGGTTCTG 60.466 52.381 0.30 0.00 42.61 3.02
3356 3914 3.945921 TGAGGAAGGTGTATACTGACTCG 59.054 47.826 4.17 0.00 0.00 4.18
3362 3920 3.946558 GACGTCTGAGGAAGGTGTATACT 59.053 47.826 8.70 0.00 0.00 2.12
3382 3940 1.300971 TTCAAGCGCTGCCAGATGAC 61.301 55.000 12.58 0.00 0.00 3.06
3416 3974 2.503765 TCATGACGAAGAATAAGGGGCA 59.496 45.455 0.00 0.00 0.00 5.36
3490 4048 3.136763 ACAGCTCCATTATTCATCTGCG 58.863 45.455 0.00 0.00 0.00 5.18
3528 4086 2.474712 GCCGCAACGTTAGCTGTC 59.525 61.111 16.76 6.85 0.00 3.51
3581 4139 3.195396 CCCAACCAACCCATCATTTACAG 59.805 47.826 0.00 0.00 0.00 2.74
3633 4191 1.265236 TTGGGCCCTAAATTGCACAG 58.735 50.000 25.70 0.00 42.76 3.66
3689 4247 3.027974 AGACGCCAAGAAAGAGTGTAC 57.972 47.619 0.00 0.00 0.00 2.90
3740 4299 2.146342 CGATGACCACTTTGCAGTTCT 58.854 47.619 0.00 0.00 0.00 3.01
3741 4300 1.197721 CCGATGACCACTTTGCAGTTC 59.802 52.381 0.00 0.00 0.00 3.01
3761 4321 0.299895 CACATCGCATCGACTTCAGC 59.700 55.000 0.00 0.00 39.18 4.26
3802 4366 1.269569 CCTGTGTGCACTACTTCGTGA 60.270 52.381 19.41 0.00 37.06 4.35
3803 4367 1.139989 CCTGTGTGCACTACTTCGTG 58.860 55.000 19.41 0.00 37.94 4.35
3806 4370 1.001406 AGCTCCTGTGTGCACTACTTC 59.999 52.381 19.41 4.24 33.44 3.01
3811 4388 3.234349 ACAGCTCCTGTGTGCACT 58.766 55.556 19.41 0.00 43.63 4.40
3823 4400 1.067283 CATCGAGTTCACCTCACAGCT 60.067 52.381 0.00 0.00 40.48 4.24
3847 4424 4.436998 AGCTCCCTACACGTGCGC 62.437 66.667 17.22 0.00 0.00 6.09
3848 4425 2.507102 CAGCTCCCTACACGTGCG 60.507 66.667 17.22 6.99 0.00 5.34
3849 4426 2.815647 GCAGCTCCCTACACGTGC 60.816 66.667 17.22 0.00 0.00 5.34
3850 4427 1.738099 GTGCAGCTCCCTACACGTG 60.738 63.158 15.48 15.48 0.00 4.49
3851 4428 2.657237 GTGCAGCTCCCTACACGT 59.343 61.111 0.00 0.00 0.00 4.49
3852 4429 2.125512 GGTGCAGCTCCCTACACG 60.126 66.667 9.07 0.00 36.41 4.49
3853 4430 2.269241 GGGTGCAGCTCCCTACAC 59.731 66.667 23.37 0.00 41.58 2.90
3854 4431 3.009115 GGGGTGCAGCTCCCTACA 61.009 66.667 28.06 0.00 44.07 2.74
3909 4490 3.160748 GCCAGCTCCCTCCCTCTC 61.161 72.222 0.00 0.00 0.00 3.20
3969 4553 0.735287 GTACCGTCTCTTTGACCGCC 60.735 60.000 0.00 0.00 42.49 6.13
3980 4564 4.632153 GCTCCATTATCATTGTACCGTCT 58.368 43.478 0.00 0.00 0.00 4.18
4050 4634 4.832608 GGTAACGGGAGGCAGCGG 62.833 72.222 0.00 0.00 0.00 5.52
4065 4649 2.121992 CTTGAGTGAGGCTGCAGGGT 62.122 60.000 17.12 0.00 0.00 4.34
4143 4730 1.577468 GGGAACAAAACAAAAGGCCG 58.423 50.000 0.00 0.00 0.00 6.13
4214 4802 1.339055 TGAGACAATAGTGCCACTGCC 60.339 52.381 7.83 0.00 36.33 4.85
4291 4889 8.055986 GGTCGTGTTTCTTTTGATTTTGAAATC 58.944 33.333 9.05 9.05 43.91 2.17
4292 4890 7.547370 TGGTCGTGTTTCTTTTGATTTTGAAAT 59.453 29.630 0.00 0.00 32.22 2.17
4295 4893 5.955488 TGGTCGTGTTTCTTTTGATTTTGA 58.045 33.333 0.00 0.00 0.00 2.69
4296 4894 6.454981 GGTTGGTCGTGTTTCTTTTGATTTTG 60.455 38.462 0.00 0.00 0.00 2.44
4297 4895 5.579119 GGTTGGTCGTGTTTCTTTTGATTTT 59.421 36.000 0.00 0.00 0.00 1.82
4298 4896 5.106442 GGTTGGTCGTGTTTCTTTTGATTT 58.894 37.500 0.00 0.00 0.00 2.17
4299 4897 4.678622 GGTTGGTCGTGTTTCTTTTGATT 58.321 39.130 0.00 0.00 0.00 2.57
4300 4898 3.242936 CGGTTGGTCGTGTTTCTTTTGAT 60.243 43.478 0.00 0.00 0.00 2.57
4325 4931 0.830648 GAATCCGTGACCCAGGATCA 59.169 55.000 0.00 0.00 45.78 2.92
4359 4965 4.896238 CACAAACTCACACGAAATAACGTC 59.104 41.667 0.00 0.00 44.76 4.34
4392 4999 2.791256 CCCCATGCACTTTACGCG 59.209 61.111 3.53 3.53 0.00 6.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.