Multiple sequence alignment - TraesCS6B01G184400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G184400 chr6B 100.000 3251 0 0 1 3251 207156778 207153528 0.000000e+00 6004
1 TraesCS6B01G184400 chr6B 97.681 345 7 1 2908 3251 142803819 142803475 2.790000e-165 592
2 TraesCS6B01G184400 chr6D 92.012 2917 117 49 18 2894 116954209 116951369 0.000000e+00 3989
3 TraesCS6B01G184400 chr6D 97.101 345 9 1 2908 3251 119965197 119965541 6.050000e-162 580
4 TraesCS6B01G184400 chr6A 91.343 2391 104 45 22 2366 145135505 145133172 0.000000e+00 3173
5 TraesCS6B01G184400 chr6A 89.773 440 23 8 2392 2817 145133103 145132672 7.930000e-151 544
6 TraesCS6B01G184400 chr3B 97.443 352 7 2 2902 3251 456979458 456979809 1.670000e-167 599
7 TraesCS6B01G184400 chr3D 97.965 344 7 0 2908 3251 184378888 184378545 6.000000e-167 597
8 TraesCS6B01G184400 chr3D 97.093 344 10 0 2908 3251 397784174 397784517 6.050000e-162 580
9 TraesCS6B01G184400 chr2D 97.681 345 7 1 2908 3251 203045789 203046133 2.790000e-165 592
10 TraesCS6B01G184400 chr5B 97.391 345 8 1 2908 3251 35185014 35185358 1.300000e-163 586
11 TraesCS6B01G184400 chr5D 97.101 345 9 1 2908 3251 377361185 377361529 6.050000e-162 580
12 TraesCS6B01G184400 chr4B 97.093 344 10 0 2908 3251 561020977 561020634 6.050000e-162 580
13 TraesCS6B01G184400 chr7B 79.121 273 32 19 1146 1407 646210281 646210023 7.220000e-37 165
14 TraesCS6B01G184400 chr7A 81.517 211 25 10 1146 1346 671483722 671483516 9.330000e-36 161
15 TraesCS6B01G184400 chr7D 80.569 211 27 10 1146 1346 579961744 579961538 2.020000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G184400 chr6B 207153528 207156778 3250 True 6004.0 6004 100.000 1 3251 1 chr6B.!!$R2 3250
1 TraesCS6B01G184400 chr6D 116951369 116954209 2840 True 3989.0 3989 92.012 18 2894 1 chr6D.!!$R1 2876
2 TraesCS6B01G184400 chr6A 145132672 145135505 2833 True 1858.5 3173 90.558 22 2817 2 chr6A.!!$R1 2795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
419 448 0.039527 CCACTGTTTGCCGGCTAAAC 60.040 55.0 30.84 30.84 38.26 2.01 F
927 979 0.252057 TCCTCTCCATCCAACGGTGA 60.252 55.0 0.00 0.00 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1819 1874 0.036022 AGAGCGGAGAAAGCAAAGCT 59.964 50.0 0.0 0.00 42.56 3.74 R
2455 2568 0.105401 TCCTCGTGGGCCCACATATA 60.105 55.0 45.4 29.02 46.47 0.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 3.547868 CGTGTAGTGTAGACATGCACATC 59.452 47.826 0.00 0.00 43.79 3.06
80 81 2.093500 GTGTAGACATGCACATCCCTCA 60.093 50.000 0.00 0.00 41.27 3.86
159 174 1.376466 CCCACAGTGGTGCTAGCTT 59.624 57.895 18.82 0.00 43.88 3.74
162 177 0.604780 CACAGTGGTGCTAGCTTGCT 60.605 55.000 20.64 6.09 38.37 3.91
293 312 2.231529 CCACGATATTCCCTCGTCTCT 58.768 52.381 0.00 0.00 45.63 3.10
419 448 0.039527 CCACTGTTTGCCGGCTAAAC 60.040 55.000 30.84 30.84 38.26 2.01
421 450 1.176619 ACTGTTTGCCGGCTAAACCC 61.177 55.000 32.54 20.81 37.25 4.11
427 456 3.810896 CCGGCTAAACCCTTGCGC 61.811 66.667 0.00 0.00 33.26 6.09
509 538 2.978010 CCCAAGTGGACGTGCACC 60.978 66.667 32.88 17.30 37.39 5.01
927 979 0.252057 TCCTCTCCATCCAACGGTGA 60.252 55.000 0.00 0.00 0.00 4.02
929 981 0.898320 CTCTCCATCCAACGGTGAGT 59.102 55.000 0.00 0.00 38.68 3.41
938 990 2.836020 AACGGTGAGTTGTCTCCCT 58.164 52.632 0.00 0.00 42.39 4.20
992 1044 1.190178 AAGTAGACGCCTTCCCCGTT 61.190 55.000 0.00 0.00 39.30 4.44
1041 1093 2.048222 GCGGTCAGTGCTACTGCA 60.048 61.111 10.17 0.00 45.54 4.41
1051 1103 1.454479 GCTACTGCATGCCATGGGT 60.454 57.895 16.68 3.96 39.41 4.51
1633 1688 4.790861 GGGTTCGAGTCGTCGGCC 62.791 72.222 13.12 10.12 46.80 6.13
1796 1851 0.746063 AATCAGAGAGCCAGCGAGAG 59.254 55.000 0.00 0.00 0.00 3.20
1816 1871 3.555917 GCAGCAAGCTATCATCAATCC 57.444 47.619 0.00 0.00 41.15 3.01
1817 1872 2.882761 GCAGCAAGCTATCATCAATCCA 59.117 45.455 0.00 0.00 41.15 3.41
1818 1873 3.304525 GCAGCAAGCTATCATCAATCCAC 60.305 47.826 0.00 0.00 41.15 4.02
1819 1874 3.881089 CAGCAAGCTATCATCAATCCACA 59.119 43.478 0.00 0.00 0.00 4.17
1820 1875 4.023963 CAGCAAGCTATCATCAATCCACAG 60.024 45.833 0.00 0.00 0.00 3.66
1821 1876 3.304525 GCAAGCTATCATCAATCCACAGC 60.305 47.826 0.00 0.00 0.00 4.40
1822 1877 4.135306 CAAGCTATCATCAATCCACAGCT 58.865 43.478 0.00 0.00 39.46 4.24
1903 1964 1.050988 TGCTGTAGAGAGGGATGGGC 61.051 60.000 0.00 0.00 0.00 5.36
1908 1969 1.414550 GTAGAGAGGGATGGGCTGAAC 59.585 57.143 0.00 0.00 0.00 3.18
1909 1970 0.043940 AGAGAGGGATGGGCTGAACT 59.956 55.000 0.00 0.00 0.00 3.01
1910 1971 0.467804 GAGAGGGATGGGCTGAACTC 59.532 60.000 0.00 0.00 0.00 3.01
1911 1972 0.043940 AGAGGGATGGGCTGAACTCT 59.956 55.000 0.00 0.00 0.00 3.24
1912 1973 0.179936 GAGGGATGGGCTGAACTCTG 59.820 60.000 0.00 0.00 0.00 3.35
1913 1974 0.252881 AGGGATGGGCTGAACTCTGA 60.253 55.000 0.00 0.00 0.00 3.27
1914 1975 0.620556 GGGATGGGCTGAACTCTGAA 59.379 55.000 0.00 0.00 0.00 3.02
1915 1976 1.407989 GGGATGGGCTGAACTCTGAAG 60.408 57.143 0.00 0.00 0.00 3.02
1916 1977 1.377536 GATGGGCTGAACTCTGAAGC 58.622 55.000 0.00 0.00 36.17 3.86
1921 1982 1.163554 GCTGAACTCTGAAGCAAGGG 58.836 55.000 0.00 0.00 36.91 3.95
1946 2007 9.819267 GGTAGCTGATTAAGACAGTAATTAGTT 57.181 33.333 0.00 0.00 37.64 2.24
1971 2032 4.094476 AGTAATAGTAGCCACACCACACT 58.906 43.478 0.00 0.00 0.00 3.55
2050 2111 7.916914 AATAGTTTTAGCTTTCGGTGTGTAT 57.083 32.000 0.00 0.00 0.00 2.29
2110 2176 2.032620 TCCTCCTTCTAGATTGGACGC 58.967 52.381 10.02 0.00 0.00 5.19
2111 2177 1.069358 CCTCCTTCTAGATTGGACGCC 59.931 57.143 10.02 0.00 0.00 5.68
2112 2178 2.035632 CTCCTTCTAGATTGGACGCCT 58.964 52.381 10.02 0.00 0.00 5.52
2113 2179 2.432510 CTCCTTCTAGATTGGACGCCTT 59.567 50.000 10.02 0.00 0.00 4.35
2114 2180 2.168521 TCCTTCTAGATTGGACGCCTTG 59.831 50.000 10.02 0.00 0.00 3.61
2332 2399 8.457238 AAGATATCAGCTCCTTAATTTGTTCC 57.543 34.615 5.32 0.00 0.00 3.62
2338 2405 3.127030 GCTCCTTAATTTGTTCCCTGACG 59.873 47.826 0.00 0.00 0.00 4.35
2385 2468 7.103641 ACCGTGATTAACTGATGACTACATTT 58.896 34.615 0.00 0.00 36.82 2.32
2390 2473 8.729756 TGATTAACTGATGACTACATTTTGTGG 58.270 33.333 0.00 0.00 36.82 4.17
2525 2643 3.550656 GACGGCAGGTCAAAGTCG 58.449 61.111 2.57 0.00 45.36 4.18
2533 2651 1.670811 CAGGTCAAAGTCGCAACTGTT 59.329 47.619 0.00 0.00 35.36 3.16
2571 2689 3.072211 GGAAAAGTCTAACCCAACTCGG 58.928 50.000 0.00 0.00 0.00 4.63
2654 2772 1.512926 CAAGTCTTTCAGTGGGGTCG 58.487 55.000 0.00 0.00 0.00 4.79
2757 2875 3.108343 CGTCGTCGTATCCAGCCT 58.892 61.111 0.00 0.00 0.00 4.58
2817 2943 1.652563 GGAAGCCACAAACCACGTC 59.347 57.895 0.00 0.00 0.00 4.34
2830 2957 7.245604 CACAAACCACGTCTTAACTTTAGTTT 58.754 34.615 0.00 0.00 39.31 2.66
2837 2964 7.075741 CACGTCTTAACTTTAGTTTTGATGGG 58.924 38.462 0.00 3.31 39.31 4.00
2838 2965 6.769341 ACGTCTTAACTTTAGTTTTGATGGGT 59.231 34.615 0.00 0.00 39.31 4.51
2839 2966 7.283807 ACGTCTTAACTTTAGTTTTGATGGGTT 59.716 33.333 0.00 0.00 39.31 4.11
2852 2979 7.121759 AGTTTTGATGGGTTGAAGATATCACTG 59.878 37.037 5.32 0.00 37.92 3.66
2858 2985 5.014123 TGGGTTGAAGATATCACTGTCCTTT 59.986 40.000 5.32 0.00 37.92 3.11
2864 2991 8.134202 TGAAGATATCACTGTCCTTTTAGTCA 57.866 34.615 5.32 0.00 31.50 3.41
2867 2994 9.606631 AAGATATCACTGTCCTTTTAGTCATTC 57.393 33.333 5.32 0.00 0.00 2.67
2876 3003 8.698973 TGTCCTTTTAGTCATTCAACCATAAA 57.301 30.769 0.00 0.00 0.00 1.40
2894 3021 5.393461 CCATAAATTGGTCTGCAACTCCTTC 60.393 44.000 0.00 0.00 40.99 3.46
2895 3022 3.515602 AATTGGTCTGCAACTCCTTCT 57.484 42.857 0.00 0.00 0.00 2.85
2896 3023 2.260844 TTGGTCTGCAACTCCTTCTG 57.739 50.000 0.00 0.00 0.00 3.02
2897 3024 1.423584 TGGTCTGCAACTCCTTCTGA 58.576 50.000 0.00 0.00 0.00 3.27
2898 3025 1.980765 TGGTCTGCAACTCCTTCTGAT 59.019 47.619 0.00 0.00 0.00 2.90
2899 3026 2.373169 TGGTCTGCAACTCCTTCTGATT 59.627 45.455 0.00 0.00 0.00 2.57
2900 3027 2.746362 GGTCTGCAACTCCTTCTGATTG 59.254 50.000 0.00 0.00 0.00 2.67
2901 3028 3.406764 GTCTGCAACTCCTTCTGATTGT 58.593 45.455 0.00 0.00 0.00 2.71
2902 3029 4.563580 GGTCTGCAACTCCTTCTGATTGTA 60.564 45.833 0.00 0.00 0.00 2.41
2903 3030 5.181748 GTCTGCAACTCCTTCTGATTGTAT 58.818 41.667 0.00 0.00 0.00 2.29
2904 3031 5.064452 GTCTGCAACTCCTTCTGATTGTATG 59.936 44.000 0.00 0.00 0.00 2.39
2905 3032 4.910195 TGCAACTCCTTCTGATTGTATGT 58.090 39.130 0.00 0.00 0.00 2.29
2906 3033 4.696877 TGCAACTCCTTCTGATTGTATGTG 59.303 41.667 0.00 0.00 0.00 3.21
2907 3034 4.697352 GCAACTCCTTCTGATTGTATGTGT 59.303 41.667 0.00 0.00 0.00 3.72
2908 3035 5.182001 GCAACTCCTTCTGATTGTATGTGTT 59.818 40.000 0.00 0.00 0.00 3.32
2909 3036 6.294176 GCAACTCCTTCTGATTGTATGTGTTT 60.294 38.462 0.00 0.00 0.00 2.83
2910 3037 7.651808 CAACTCCTTCTGATTGTATGTGTTTT 58.348 34.615 0.00 0.00 0.00 2.43
2911 3038 7.823745 ACTCCTTCTGATTGTATGTGTTTTT 57.176 32.000 0.00 0.00 0.00 1.94
2933 3060 5.975693 TTTTTGAAACGGAGGCATAAGAT 57.024 34.783 0.00 0.00 0.00 2.40
2934 3061 5.975693 TTTTGAAACGGAGGCATAAGATT 57.024 34.783 0.00 0.00 0.00 2.40
2935 3062 5.975693 TTTGAAACGGAGGCATAAGATTT 57.024 34.783 0.00 0.00 0.00 2.17
2936 3063 7.455641 TTTTGAAACGGAGGCATAAGATTTA 57.544 32.000 0.00 0.00 0.00 1.40
2937 3064 6.431198 TTGAAACGGAGGCATAAGATTTAC 57.569 37.500 0.00 0.00 0.00 2.01
2938 3065 4.879545 TGAAACGGAGGCATAAGATTTACC 59.120 41.667 0.00 0.00 0.00 2.85
2939 3066 4.772886 AACGGAGGCATAAGATTTACCT 57.227 40.909 0.00 0.00 0.00 3.08
2940 3067 4.338379 ACGGAGGCATAAGATTTACCTC 57.662 45.455 0.00 0.00 45.10 3.85
2980 3107 9.469097 AGAGAGAATAGAGTTTAGAGCTTTACA 57.531 33.333 0.00 0.00 0.00 2.41
2984 3111 9.810545 AGAATAGAGTTTAGAGCTTTACATGAC 57.189 33.333 0.00 0.00 0.00 3.06
2985 3112 9.587772 GAATAGAGTTTAGAGCTTTACATGACA 57.412 33.333 0.00 0.00 0.00 3.58
2986 3113 8.934507 ATAGAGTTTAGAGCTTTACATGACAC 57.065 34.615 0.00 0.00 0.00 3.67
2987 3114 6.166982 AGAGTTTAGAGCTTTACATGACACC 58.833 40.000 0.00 0.00 0.00 4.16
2988 3115 5.246307 AGTTTAGAGCTTTACATGACACCC 58.754 41.667 0.00 0.00 0.00 4.61
2989 3116 2.789409 AGAGCTTTACATGACACCCC 57.211 50.000 0.00 0.00 0.00 4.95
2990 3117 1.985159 AGAGCTTTACATGACACCCCA 59.015 47.619 0.00 0.00 0.00 4.96
2991 3118 2.578021 AGAGCTTTACATGACACCCCAT 59.422 45.455 0.00 0.00 0.00 4.00
2992 3119 3.780294 AGAGCTTTACATGACACCCCATA 59.220 43.478 0.00 0.00 0.00 2.74
2993 3120 3.877508 GAGCTTTACATGACACCCCATAC 59.122 47.826 0.00 0.00 0.00 2.39
2994 3121 3.265737 AGCTTTACATGACACCCCATACA 59.734 43.478 0.00 0.00 0.00 2.29
2995 3122 4.013728 GCTTTACATGACACCCCATACAA 58.986 43.478 0.00 0.00 0.00 2.41
2996 3123 4.096382 GCTTTACATGACACCCCATACAAG 59.904 45.833 0.00 0.00 0.00 3.16
2997 3124 2.128771 ACATGACACCCCATACAAGC 57.871 50.000 0.00 0.00 0.00 4.01
2998 3125 1.016627 CATGACACCCCATACAAGCG 58.983 55.000 0.00 0.00 0.00 4.68
2999 3126 0.908910 ATGACACCCCATACAAGCGA 59.091 50.000 0.00 0.00 0.00 4.93
3000 3127 0.036765 TGACACCCCATACAAGCGAC 60.037 55.000 0.00 0.00 0.00 5.19
3001 3128 0.036765 GACACCCCATACAAGCGACA 60.037 55.000 0.00 0.00 0.00 4.35
3002 3129 0.618458 ACACCCCATACAAGCGACAT 59.382 50.000 0.00 0.00 0.00 3.06
3003 3130 1.016627 CACCCCATACAAGCGACATG 58.983 55.000 0.00 0.00 0.00 3.21
3004 3131 0.908910 ACCCCATACAAGCGACATGA 59.091 50.000 0.00 0.00 0.00 3.07
3005 3132 1.299541 CCCCATACAAGCGACATGAC 58.700 55.000 0.00 0.00 0.00 3.06
3006 3133 1.406751 CCCCATACAAGCGACATGACA 60.407 52.381 0.00 0.00 0.00 3.58
3007 3134 2.355197 CCCATACAAGCGACATGACAA 58.645 47.619 0.00 0.00 0.00 3.18
3008 3135 2.945008 CCCATACAAGCGACATGACAAT 59.055 45.455 0.00 0.00 0.00 2.71
3009 3136 3.378112 CCCATACAAGCGACATGACAATT 59.622 43.478 0.00 0.00 0.00 2.32
3010 3137 4.574421 CCCATACAAGCGACATGACAATTA 59.426 41.667 0.00 0.00 0.00 1.40
3011 3138 5.501715 CCATACAAGCGACATGACAATTAC 58.498 41.667 0.00 0.00 0.00 1.89
3012 3139 5.294306 CCATACAAGCGACATGACAATTACT 59.706 40.000 0.00 0.00 0.00 2.24
3013 3140 4.928661 ACAAGCGACATGACAATTACTC 57.071 40.909 0.00 0.00 0.00 2.59
3014 3141 4.314961 ACAAGCGACATGACAATTACTCA 58.685 39.130 0.00 0.00 0.00 3.41
3015 3142 4.152402 ACAAGCGACATGACAATTACTCAC 59.848 41.667 0.00 0.00 0.00 3.51
3016 3143 3.925379 AGCGACATGACAATTACTCACA 58.075 40.909 0.00 0.00 0.00 3.58
3017 3144 4.507710 AGCGACATGACAATTACTCACAT 58.492 39.130 0.00 0.00 0.00 3.21
3018 3145 5.660460 AGCGACATGACAATTACTCACATA 58.340 37.500 0.00 0.00 0.00 2.29
3019 3146 5.520288 AGCGACATGACAATTACTCACATAC 59.480 40.000 0.00 0.00 0.00 2.39
3020 3147 5.290885 GCGACATGACAATTACTCACATACA 59.709 40.000 0.00 0.00 0.00 2.29
3021 3148 6.183360 GCGACATGACAATTACTCACATACAA 60.183 38.462 0.00 0.00 0.00 2.41
3022 3149 7.465916 GCGACATGACAATTACTCACATACAAT 60.466 37.037 0.00 0.00 0.00 2.71
3023 3150 7.847564 CGACATGACAATTACTCACATACAATG 59.152 37.037 0.00 0.00 0.00 2.82
3024 3151 8.791327 ACATGACAATTACTCACATACAATGA 57.209 30.769 0.00 0.00 0.00 2.57
3025 3152 9.399797 ACATGACAATTACTCACATACAATGAT 57.600 29.630 0.00 0.00 0.00 2.45
3030 3157 9.547753 ACAATTACTCACATACAATGATAGTCC 57.452 33.333 0.00 0.00 33.33 3.85
3031 3158 8.993121 CAATTACTCACATACAATGATAGTCCC 58.007 37.037 0.00 0.00 33.33 4.46
3032 3159 7.914427 TTACTCACATACAATGATAGTCCCT 57.086 36.000 0.00 0.00 33.33 4.20
3033 3160 9.601810 ATTACTCACATACAATGATAGTCCCTA 57.398 33.333 0.00 0.00 33.33 3.53
3034 3161 7.531857 ACTCACATACAATGATAGTCCCTAG 57.468 40.000 0.00 0.00 0.00 3.02
3035 3162 6.015010 ACTCACATACAATGATAGTCCCTAGC 60.015 42.308 0.00 0.00 0.00 3.42
3036 3163 6.077993 TCACATACAATGATAGTCCCTAGCT 58.922 40.000 0.00 0.00 0.00 3.32
3037 3164 6.554982 TCACATACAATGATAGTCCCTAGCTT 59.445 38.462 0.00 0.00 0.00 3.74
3038 3165 6.870965 CACATACAATGATAGTCCCTAGCTTC 59.129 42.308 0.00 0.00 0.00 3.86
3039 3166 6.784969 ACATACAATGATAGTCCCTAGCTTCT 59.215 38.462 0.00 0.00 0.00 2.85
3040 3167 7.291182 ACATACAATGATAGTCCCTAGCTTCTT 59.709 37.037 0.00 0.00 0.00 2.52
3041 3168 5.923204 ACAATGATAGTCCCTAGCTTCTTG 58.077 41.667 0.00 0.00 0.00 3.02
3042 3169 5.163258 ACAATGATAGTCCCTAGCTTCTTGG 60.163 44.000 0.00 0.00 0.00 3.61
3043 3170 2.700897 TGATAGTCCCTAGCTTCTTGGC 59.299 50.000 0.00 0.00 0.00 4.52
3044 3171 1.112113 TAGTCCCTAGCTTCTTGGCG 58.888 55.000 0.00 0.00 37.29 5.69
3045 3172 1.815840 GTCCCTAGCTTCTTGGCGC 60.816 63.158 0.00 0.00 37.29 6.53
3046 3173 2.514824 CCCTAGCTTCTTGGCGCC 60.515 66.667 22.73 22.73 37.29 6.53
3047 3174 2.892425 CCTAGCTTCTTGGCGCCG 60.892 66.667 23.90 8.74 37.29 6.46
3048 3175 2.892425 CTAGCTTCTTGGCGCCGG 60.892 66.667 23.90 17.43 37.29 6.13
3053 3180 3.950794 CTTCTTGGCGCCGGCAGTA 62.951 63.158 28.98 8.99 42.47 2.74
3054 3181 3.538785 TTCTTGGCGCCGGCAGTAA 62.539 57.895 28.98 16.11 42.47 2.24
3055 3182 3.799755 CTTGGCGCCGGCAGTAAC 61.800 66.667 28.98 11.50 42.47 2.50
3060 3187 2.502093 CGCCGGCAGTAACCCATA 59.498 61.111 28.98 0.00 0.00 2.74
3061 3188 1.153329 CGCCGGCAGTAACCCATAA 60.153 57.895 28.98 0.00 0.00 1.90
3062 3189 1.433837 CGCCGGCAGTAACCCATAAC 61.434 60.000 28.98 0.00 0.00 1.89
3063 3190 0.107361 GCCGGCAGTAACCCATAACT 60.107 55.000 24.80 0.00 0.00 2.24
3064 3191 1.680860 GCCGGCAGTAACCCATAACTT 60.681 52.381 24.80 0.00 0.00 2.66
3065 3192 2.718563 CCGGCAGTAACCCATAACTTT 58.281 47.619 0.00 0.00 0.00 2.66
3066 3193 2.422127 CCGGCAGTAACCCATAACTTTG 59.578 50.000 0.00 0.00 0.00 2.77
3067 3194 2.159435 CGGCAGTAACCCATAACTTTGC 60.159 50.000 0.00 0.00 0.00 3.68
3068 3195 2.165641 GGCAGTAACCCATAACTTTGCC 59.834 50.000 0.00 0.00 30.46 4.52
3069 3196 3.089284 GCAGTAACCCATAACTTTGCCT 58.911 45.455 0.00 0.00 0.00 4.75
3070 3197 3.128764 GCAGTAACCCATAACTTTGCCTC 59.871 47.826 0.00 0.00 0.00 4.70
3071 3198 4.331968 CAGTAACCCATAACTTTGCCTCA 58.668 43.478 0.00 0.00 0.00 3.86
3072 3199 4.156008 CAGTAACCCATAACTTTGCCTCAC 59.844 45.833 0.00 0.00 0.00 3.51
3073 3200 2.215942 ACCCATAACTTTGCCTCACC 57.784 50.000 0.00 0.00 0.00 4.02
3074 3201 1.427368 ACCCATAACTTTGCCTCACCA 59.573 47.619 0.00 0.00 0.00 4.17
3075 3202 2.158385 ACCCATAACTTTGCCTCACCAA 60.158 45.455 0.00 0.00 0.00 3.67
3076 3203 3.099141 CCCATAACTTTGCCTCACCAAT 58.901 45.455 0.00 0.00 0.00 3.16
3077 3204 3.119029 CCCATAACTTTGCCTCACCAATG 60.119 47.826 0.00 0.00 0.00 2.82
3078 3205 3.763360 CCATAACTTTGCCTCACCAATGA 59.237 43.478 0.00 0.00 0.00 2.57
3079 3206 4.403432 CCATAACTTTGCCTCACCAATGAT 59.597 41.667 0.00 0.00 33.22 2.45
3080 3207 3.947910 AACTTTGCCTCACCAATGATG 57.052 42.857 0.00 0.00 33.22 3.07
3092 3219 3.370840 CCAATGATGGTTTGGAGGAGA 57.629 47.619 0.00 0.00 45.35 3.71
3093 3220 3.700538 CCAATGATGGTTTGGAGGAGAA 58.299 45.455 0.00 0.00 45.35 2.87
3094 3221 4.284178 CCAATGATGGTTTGGAGGAGAAT 58.716 43.478 0.00 0.00 45.35 2.40
3095 3222 5.448654 CCAATGATGGTTTGGAGGAGAATA 58.551 41.667 0.00 0.00 45.35 1.75
3096 3223 5.533903 CCAATGATGGTTTGGAGGAGAATAG 59.466 44.000 0.00 0.00 45.35 1.73
3097 3224 4.778213 TGATGGTTTGGAGGAGAATAGG 57.222 45.455 0.00 0.00 0.00 2.57
3098 3225 3.117888 TGATGGTTTGGAGGAGAATAGGC 60.118 47.826 0.00 0.00 0.00 3.93
3099 3226 1.209504 TGGTTTGGAGGAGAATAGGCG 59.790 52.381 0.00 0.00 0.00 5.52
3100 3227 1.475213 GGTTTGGAGGAGAATAGGCGG 60.475 57.143 0.00 0.00 0.00 6.13
3101 3228 1.209747 GTTTGGAGGAGAATAGGCGGT 59.790 52.381 0.00 0.00 0.00 5.68
3102 3229 0.830648 TTGGAGGAGAATAGGCGGTG 59.169 55.000 0.00 0.00 0.00 4.94
3103 3230 1.048724 TGGAGGAGAATAGGCGGTGG 61.049 60.000 0.00 0.00 0.00 4.61
3104 3231 1.069935 GAGGAGAATAGGCGGTGGC 59.930 63.158 0.00 0.00 38.90 5.01
3105 3232 2.280186 GGAGAATAGGCGGTGGCG 60.280 66.667 0.00 0.00 41.24 5.69
3106 3233 2.967615 GAGAATAGGCGGTGGCGC 60.968 66.667 0.00 0.00 41.24 6.53
3107 3234 3.733344 GAGAATAGGCGGTGGCGCA 62.733 63.158 10.83 0.00 41.24 6.09
3108 3235 2.822255 GAATAGGCGGTGGCGCAA 60.822 61.111 10.83 0.00 41.24 4.85
3109 3236 2.360600 AATAGGCGGTGGCGCAAA 60.361 55.556 10.83 0.00 41.24 3.68
3110 3237 1.724582 GAATAGGCGGTGGCGCAAAT 61.725 55.000 10.83 0.00 41.24 2.32
3111 3238 1.319614 AATAGGCGGTGGCGCAAATT 61.320 50.000 10.83 0.00 41.24 1.82
3112 3239 1.319614 ATAGGCGGTGGCGCAAATTT 61.320 50.000 10.83 0.00 41.24 1.82
3113 3240 1.528292 TAGGCGGTGGCGCAAATTTT 61.528 50.000 10.83 0.00 41.24 1.82
3114 3241 1.958715 GGCGGTGGCGCAAATTTTT 60.959 52.632 10.83 0.00 41.24 1.94
3115 3242 1.203812 GCGGTGGCGCAAATTTTTG 59.796 52.632 10.83 0.00 41.03 2.44
3129 3256 6.885735 CAAATTTTTGCCGAAATACCCTAG 57.114 37.500 0.00 0.00 0.00 3.02
3130 3257 4.649088 ATTTTTGCCGAAATACCCTAGC 57.351 40.909 0.00 0.00 0.00 3.42
3131 3258 2.791347 TTTGCCGAAATACCCTAGCA 57.209 45.000 0.00 0.00 0.00 3.49
3132 3259 3.290948 TTTGCCGAAATACCCTAGCAT 57.709 42.857 0.00 0.00 0.00 3.79
3133 3260 3.290948 TTGCCGAAATACCCTAGCATT 57.709 42.857 0.00 0.00 0.00 3.56
3134 3261 3.290948 TGCCGAAATACCCTAGCATTT 57.709 42.857 0.00 0.00 0.00 2.32
3135 3262 3.211045 TGCCGAAATACCCTAGCATTTC 58.789 45.455 10.42 10.42 37.65 2.17
3147 3274 3.765349 GCATTTCGCTCGTTCCAAA 57.235 47.368 0.00 0.00 37.77 3.28
3148 3275 2.262572 GCATTTCGCTCGTTCCAAAT 57.737 45.000 0.00 0.00 37.77 2.32
3149 3276 1.913403 GCATTTCGCTCGTTCCAAATG 59.087 47.619 8.73 8.73 38.65 2.32
3150 3277 2.518949 CATTTCGCTCGTTCCAAATGG 58.481 47.619 0.00 0.00 34.10 3.16
3151 3278 1.600023 TTTCGCTCGTTCCAAATGGT 58.400 45.000 0.00 0.00 36.34 3.55
3152 3279 1.153353 TTCGCTCGTTCCAAATGGTC 58.847 50.000 0.00 0.00 36.34 4.02
3153 3280 0.672401 TCGCTCGTTCCAAATGGTCC 60.672 55.000 0.00 0.00 36.34 4.46
3154 3281 0.953471 CGCTCGTTCCAAATGGTCCA 60.953 55.000 0.00 0.00 36.34 4.02
3155 3282 1.243902 GCTCGTTCCAAATGGTCCAA 58.756 50.000 0.00 0.00 36.34 3.53
3156 3283 1.200020 GCTCGTTCCAAATGGTCCAAG 59.800 52.381 0.00 0.00 36.34 3.61
3157 3284 2.778299 CTCGTTCCAAATGGTCCAAGA 58.222 47.619 0.00 0.00 36.34 3.02
3158 3285 2.744202 CTCGTTCCAAATGGTCCAAGAG 59.256 50.000 0.00 0.00 36.34 2.85
3159 3286 1.812571 CGTTCCAAATGGTCCAAGAGG 59.187 52.381 0.00 0.00 36.34 3.69
3160 3287 2.814097 CGTTCCAAATGGTCCAAGAGGT 60.814 50.000 0.00 0.00 36.34 3.85
3161 3288 2.558359 GTTCCAAATGGTCCAAGAGGTG 59.442 50.000 0.00 0.00 36.34 4.00
3162 3289 2.061848 TCCAAATGGTCCAAGAGGTGA 58.938 47.619 0.00 0.00 36.34 4.02
3163 3290 2.040278 TCCAAATGGTCCAAGAGGTGAG 59.960 50.000 0.00 0.00 36.34 3.51
3164 3291 1.815003 CAAATGGTCCAAGAGGTGAGC 59.185 52.381 0.00 0.00 35.89 4.26
3165 3292 1.067295 AATGGTCCAAGAGGTGAGCA 58.933 50.000 0.00 0.00 42.50 4.26
3166 3293 1.293062 ATGGTCCAAGAGGTGAGCAT 58.707 50.000 0.00 0.00 42.96 3.79
3167 3294 0.325933 TGGTCCAAGAGGTGAGCATG 59.674 55.000 0.00 0.00 34.34 4.06
3168 3295 0.615331 GGTCCAAGAGGTGAGCATGA 59.385 55.000 0.00 0.00 35.89 3.07
3169 3296 1.677217 GGTCCAAGAGGTGAGCATGAC 60.677 57.143 0.00 0.00 35.89 3.06
3170 3297 0.247460 TCCAAGAGGTGAGCATGACG 59.753 55.000 0.00 0.00 35.89 4.35
3171 3298 0.247460 CCAAGAGGTGAGCATGACGA 59.753 55.000 0.00 0.00 0.00 4.20
3172 3299 1.638133 CAAGAGGTGAGCATGACGAG 58.362 55.000 0.00 0.00 0.00 4.18
3173 3300 1.203287 CAAGAGGTGAGCATGACGAGA 59.797 52.381 0.00 0.00 0.00 4.04
3174 3301 1.102154 AGAGGTGAGCATGACGAGAG 58.898 55.000 0.00 0.00 0.00 3.20
3175 3302 1.098869 GAGGTGAGCATGACGAGAGA 58.901 55.000 0.00 0.00 0.00 3.10
3176 3303 1.065401 GAGGTGAGCATGACGAGAGAG 59.935 57.143 0.00 0.00 0.00 3.20
3177 3304 0.102120 GGTGAGCATGACGAGAGAGG 59.898 60.000 0.00 0.00 0.00 3.69
3178 3305 1.098869 GTGAGCATGACGAGAGAGGA 58.901 55.000 0.00 0.00 0.00 3.71
3179 3306 1.098869 TGAGCATGACGAGAGAGGAC 58.901 55.000 0.00 0.00 0.00 3.85
3180 3307 1.098869 GAGCATGACGAGAGAGGACA 58.901 55.000 0.00 0.00 0.00 4.02
3181 3308 1.680735 GAGCATGACGAGAGAGGACAT 59.319 52.381 0.00 0.00 0.00 3.06
3182 3309 1.408340 AGCATGACGAGAGAGGACATG 59.592 52.381 0.00 0.00 40.50 3.21
3183 3310 1.537776 GCATGACGAGAGAGGACATGG 60.538 57.143 0.00 0.00 38.76 3.66
3184 3311 0.749649 ATGACGAGAGAGGACATGGC 59.250 55.000 0.00 0.00 0.00 4.40
3185 3312 0.611896 TGACGAGAGAGGACATGGCA 60.612 55.000 0.00 0.00 0.00 4.92
3186 3313 0.749649 GACGAGAGAGGACATGGCAT 59.250 55.000 0.00 0.00 0.00 4.40
3187 3314 0.463204 ACGAGAGAGGACATGGCATG 59.537 55.000 25.31 25.31 0.00 4.06
3188 3315 0.879400 CGAGAGAGGACATGGCATGC 60.879 60.000 26.70 18.39 0.00 4.06
3189 3316 0.534652 GAGAGAGGACATGGCATGCC 60.535 60.000 30.54 30.54 0.00 4.40
3198 3325 2.037049 TGGCATGCCAATTCGGGT 59.963 55.556 36.95 0.00 44.12 5.28
3199 3326 1.608918 TGGCATGCCAATTCGGGTT 60.609 52.632 36.95 0.00 44.12 4.11
3200 3327 1.190833 TGGCATGCCAATTCGGGTTT 61.191 50.000 36.95 0.00 44.12 3.27
3201 3328 0.460109 GGCATGCCAATTCGGGTTTC 60.460 55.000 32.08 0.00 35.81 2.78
3202 3329 0.801836 GCATGCCAATTCGGGTTTCG 60.802 55.000 6.36 0.00 40.90 3.46
3203 3330 0.179140 CATGCCAATTCGGGTTTCGG 60.179 55.000 0.00 0.00 39.77 4.30
3204 3331 0.610785 ATGCCAATTCGGGTTTCGGT 60.611 50.000 0.00 0.00 39.77 4.69
3205 3332 1.238625 TGCCAATTCGGGTTTCGGTC 61.239 55.000 0.00 0.00 39.77 4.79
3206 3333 1.238625 GCCAATTCGGGTTTCGGTCA 61.239 55.000 0.00 0.00 39.77 4.02
3207 3334 1.459450 CCAATTCGGGTTTCGGTCAT 58.541 50.000 0.00 0.00 39.77 3.06
3208 3335 1.400494 CCAATTCGGGTTTCGGTCATC 59.600 52.381 0.00 0.00 39.77 2.92
3209 3336 1.062002 CAATTCGGGTTTCGGTCATCG 59.938 52.381 0.00 0.00 39.77 3.84
3210 3337 0.461339 ATTCGGGTTTCGGTCATCGG 60.461 55.000 0.00 0.00 39.77 4.18
3211 3338 1.818959 TTCGGGTTTCGGTCATCGGT 61.819 55.000 0.00 0.00 39.77 4.69
3212 3339 0.964860 TCGGGTTTCGGTCATCGGTA 60.965 55.000 0.00 0.00 39.77 4.02
3213 3340 0.803380 CGGGTTTCGGTCATCGGTAC 60.803 60.000 0.00 0.00 39.77 3.34
3226 3353 2.745037 GGTACGCTTGACCCACCA 59.255 61.111 0.00 0.00 0.00 4.17
3227 3354 1.670083 GGTACGCTTGACCCACCAC 60.670 63.158 0.00 0.00 0.00 4.16
3228 3355 1.370064 GTACGCTTGACCCACCACT 59.630 57.895 0.00 0.00 0.00 4.00
3229 3356 0.669625 GTACGCTTGACCCACCACTC 60.670 60.000 0.00 0.00 0.00 3.51
3230 3357 1.823169 TACGCTTGACCCACCACTCC 61.823 60.000 0.00 0.00 0.00 3.85
3231 3358 2.883828 CGCTTGACCCACCACTCCT 61.884 63.158 0.00 0.00 0.00 3.69
3232 3359 1.456287 GCTTGACCCACCACTCCTT 59.544 57.895 0.00 0.00 0.00 3.36
3233 3360 0.890996 GCTTGACCCACCACTCCTTG 60.891 60.000 0.00 0.00 0.00 3.61
3234 3361 0.764890 CTTGACCCACCACTCCTTGA 59.235 55.000 0.00 0.00 0.00 3.02
3235 3362 0.472471 TTGACCCACCACTCCTTGAC 59.528 55.000 0.00 0.00 0.00 3.18
3236 3363 1.004918 GACCCACCACTCCTTGACG 60.005 63.158 0.00 0.00 0.00 4.35
3237 3364 2.347490 CCCACCACTCCTTGACGG 59.653 66.667 0.00 0.00 0.00 4.79
3238 3365 2.214216 CCCACCACTCCTTGACGGA 61.214 63.158 0.00 0.00 40.30 4.69
3239 3366 1.553690 CCCACCACTCCTTGACGGAT 61.554 60.000 0.00 0.00 42.12 4.18
3240 3367 0.324943 CCACCACTCCTTGACGGATT 59.675 55.000 0.00 0.00 42.12 3.01
3241 3368 1.676014 CCACCACTCCTTGACGGATTC 60.676 57.143 0.00 0.00 42.12 2.52
3242 3369 1.001974 CACCACTCCTTGACGGATTCA 59.998 52.381 0.00 0.00 42.12 2.57
3243 3370 1.909302 ACCACTCCTTGACGGATTCAT 59.091 47.619 0.00 0.00 42.12 2.57
3244 3371 2.093447 ACCACTCCTTGACGGATTCATC 60.093 50.000 0.00 0.00 42.12 2.92
3245 3372 2.093500 CCACTCCTTGACGGATTCATCA 60.093 50.000 0.00 0.00 42.12 3.07
3246 3373 3.599343 CACTCCTTGACGGATTCATCAA 58.401 45.455 3.43 3.43 42.12 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.765795 GGAATGCTATTGTAGTAGTATGTCTTT 57.234 33.333 0.00 0.00 29.18 2.52
6 7 8.713708 AGGAATGCTATTGTAGTAGTATGTCT 57.286 34.615 0.00 0.00 29.18 3.41
7 8 8.030106 GGAGGAATGCTATTGTAGTAGTATGTC 58.970 40.741 0.00 0.00 29.18 3.06
8 9 7.038941 GGGAGGAATGCTATTGTAGTAGTATGT 60.039 40.741 0.00 0.00 29.18 2.29
9 10 7.324178 GGGAGGAATGCTATTGTAGTAGTATG 58.676 42.308 0.00 0.00 29.18 2.39
10 11 6.440965 GGGGAGGAATGCTATTGTAGTAGTAT 59.559 42.308 0.00 0.00 0.00 2.12
11 12 5.778750 GGGGAGGAATGCTATTGTAGTAGTA 59.221 44.000 0.00 0.00 0.00 1.82
12 13 4.593634 GGGGAGGAATGCTATTGTAGTAGT 59.406 45.833 0.00 0.00 0.00 2.73
13 14 4.322049 CGGGGAGGAATGCTATTGTAGTAG 60.322 50.000 0.00 0.00 0.00 2.57
14 15 3.576982 CGGGGAGGAATGCTATTGTAGTA 59.423 47.826 0.00 0.00 0.00 1.82
15 16 2.368875 CGGGGAGGAATGCTATTGTAGT 59.631 50.000 0.00 0.00 0.00 2.73
16 17 2.872038 GCGGGGAGGAATGCTATTGTAG 60.872 54.545 0.00 0.00 0.00 2.74
27 28 3.467226 GTGGATCGCGGGGAGGAA 61.467 66.667 6.13 0.00 0.00 3.36
75 76 1.221840 CCCACTTGGACGATGAGGG 59.778 63.158 0.00 0.00 37.39 4.30
159 174 2.281002 TGCGCTGAAGCTGAAGCA 60.281 55.556 18.17 9.46 45.16 3.91
162 177 2.280119 ACGTGCGCTGAAGCTGAA 60.280 55.556 9.73 0.00 39.32 3.02
293 312 0.613777 GGGGCGAAGGAAGAAGAGAA 59.386 55.000 0.00 0.00 0.00 2.87
427 456 3.833645 TGAACGAGATCCGCGGGG 61.834 66.667 27.83 13.31 43.32 5.73
553 590 3.793144 GAGCAAGCTGGCGGTTCG 61.793 66.667 7.63 0.00 39.27 3.95
898 950 1.700042 ATGGAGAGGATGGGCGAACC 61.700 60.000 0.00 0.00 40.81 3.62
900 952 1.410850 GGATGGAGAGGATGGGCGAA 61.411 60.000 0.00 0.00 0.00 4.70
903 955 0.179006 GTTGGATGGAGAGGATGGGC 60.179 60.000 0.00 0.00 0.00 5.36
907 959 0.833287 CACCGTTGGATGGAGAGGAT 59.167 55.000 0.00 0.00 0.00 3.24
927 979 1.484444 GGGTGCTCAGGGAGACAACT 61.484 60.000 0.00 0.00 0.00 3.16
929 981 2.224159 GGGGTGCTCAGGGAGACAA 61.224 63.158 0.00 0.00 0.00 3.18
938 990 1.761174 GAGTCAAAGGGGGTGCTCA 59.239 57.895 0.00 0.00 0.00 4.26
992 1044 1.654317 GAGTAGAGTTCTCGAGCCGA 58.346 55.000 7.81 0.00 0.00 5.54
1041 1093 2.045045 CGGTGTCACCCATGGCAT 60.045 61.111 16.60 0.00 43.85 4.40
1051 1103 4.673298 ATGTTCGCGCCGGTGTCA 62.673 61.111 17.91 11.26 0.00 3.58
1486 1538 2.523168 TGCAGGGACGAGGTGACA 60.523 61.111 0.00 0.00 0.00 3.58
1488 1540 3.695606 GCTGCAGGGACGAGGTGA 61.696 66.667 17.12 0.00 0.00 4.02
1492 1544 4.383861 TGCTGCTGCAGGGACGAG 62.384 66.667 29.05 5.12 45.31 4.18
1633 1688 4.079850 AGCAGCAGCCTGTCCTCG 62.080 66.667 0.00 0.00 43.56 4.63
1684 1739 2.267961 GTGTTAGTGGAGGCCGGG 59.732 66.667 2.18 0.00 0.00 5.73
1796 1851 2.882761 TGGATTGATGATAGCTTGCTGC 59.117 45.455 5.26 0.00 43.29 5.25
1806 1861 3.362706 AGCAAAGCTGTGGATTGATGAT 58.637 40.909 5.91 0.00 37.57 2.45
1807 1862 2.799017 AGCAAAGCTGTGGATTGATGA 58.201 42.857 5.91 0.00 37.57 2.92
1808 1863 3.587797 AAGCAAAGCTGTGGATTGATG 57.412 42.857 5.91 0.00 39.62 3.07
1809 1864 3.830755 AGAAAGCAAAGCTGTGGATTGAT 59.169 39.130 5.91 0.00 39.62 2.57
1810 1865 3.225104 AGAAAGCAAAGCTGTGGATTGA 58.775 40.909 5.91 0.00 39.62 2.57
1811 1866 3.572584 GAGAAAGCAAAGCTGTGGATTG 58.427 45.455 5.91 0.00 39.62 2.67
1812 1867 2.560105 GGAGAAAGCAAAGCTGTGGATT 59.440 45.455 5.91 0.00 39.62 3.01
1813 1868 2.165998 GGAGAAAGCAAAGCTGTGGAT 58.834 47.619 5.91 0.00 39.62 3.41
1814 1869 1.609208 GGAGAAAGCAAAGCTGTGGA 58.391 50.000 5.91 0.00 39.62 4.02
1815 1870 0.239347 CGGAGAAAGCAAAGCTGTGG 59.761 55.000 5.91 0.00 39.62 4.17
1816 1871 0.386478 GCGGAGAAAGCAAAGCTGTG 60.386 55.000 0.00 0.00 39.62 3.66
1817 1872 0.536006 AGCGGAGAAAGCAAAGCTGT 60.536 50.000 0.00 0.00 39.62 4.40
1818 1873 0.167689 GAGCGGAGAAAGCAAAGCTG 59.832 55.000 0.00 0.00 39.62 4.24
1819 1874 0.036022 AGAGCGGAGAAAGCAAAGCT 59.964 50.000 0.00 0.00 42.56 3.74
1820 1875 0.167689 CAGAGCGGAGAAAGCAAAGC 59.832 55.000 0.00 0.00 37.01 3.51
1821 1876 0.801251 CCAGAGCGGAGAAAGCAAAG 59.199 55.000 0.00 0.00 36.56 2.77
1822 1877 0.606401 CCCAGAGCGGAGAAAGCAAA 60.606 55.000 0.00 0.00 36.56 3.68
1903 1964 2.557920 ACCCTTGCTTCAGAGTTCAG 57.442 50.000 0.00 0.00 0.00 3.02
1908 1969 1.552337 TCAGCTACCCTTGCTTCAGAG 59.448 52.381 0.00 0.00 38.92 3.35
1909 1970 1.644509 TCAGCTACCCTTGCTTCAGA 58.355 50.000 0.00 0.00 38.92 3.27
1910 1971 2.706339 ATCAGCTACCCTTGCTTCAG 57.294 50.000 0.00 0.00 38.92 3.02
1911 1972 4.225042 TCTTAATCAGCTACCCTTGCTTCA 59.775 41.667 0.00 0.00 38.92 3.02
1912 1973 4.572795 GTCTTAATCAGCTACCCTTGCTTC 59.427 45.833 0.00 0.00 38.92 3.86
1913 1974 4.019321 TGTCTTAATCAGCTACCCTTGCTT 60.019 41.667 0.00 0.00 38.92 3.91
1914 1975 3.519510 TGTCTTAATCAGCTACCCTTGCT 59.480 43.478 0.00 0.00 42.06 3.91
1915 1976 3.873910 TGTCTTAATCAGCTACCCTTGC 58.126 45.455 0.00 0.00 0.00 4.01
1916 1977 5.091261 ACTGTCTTAATCAGCTACCCTTG 57.909 43.478 7.44 0.00 36.50 3.61
1946 2007 5.018149 TGTGGTGTGGCTACTATTACTACA 58.982 41.667 0.64 2.69 0.00 2.74
1949 2010 4.094476 AGTGTGGTGTGGCTACTATTACT 58.906 43.478 0.64 0.00 0.00 2.24
1964 2025 4.742743 GCTGAACCTGTAAAGTAGTGTGGT 60.743 45.833 0.00 0.00 0.00 4.16
1971 2032 6.041182 TCAACTGTAGCTGAACCTGTAAAGTA 59.959 38.462 0.00 0.00 0.00 2.24
2069 2130 3.987220 GAGAAGATTCCTCGCTATCAAGC 59.013 47.826 0.00 0.00 45.86 4.01
2110 2176 1.363744 CGAGACAAGCTAAGGCAAGG 58.636 55.000 0.00 0.00 41.70 3.61
2111 2177 1.066858 TCCGAGACAAGCTAAGGCAAG 60.067 52.381 0.00 0.00 41.70 4.01
2112 2178 0.973632 TCCGAGACAAGCTAAGGCAA 59.026 50.000 0.00 0.00 41.70 4.52
2113 2179 0.973632 TTCCGAGACAAGCTAAGGCA 59.026 50.000 0.00 0.00 41.70 4.75
2114 2180 1.646189 CTTCCGAGACAAGCTAAGGC 58.354 55.000 0.00 0.00 39.06 4.35
2338 2405 4.864916 ACATGTGCACTCGAATATGTTC 57.135 40.909 19.41 0.00 0.00 3.18
2438 2550 6.818644 CCACATATATACATTCTGTACAGGCC 59.181 42.308 22.48 0.00 35.42 5.19
2455 2568 0.105401 TCCTCGTGGGCCCACATATA 60.105 55.000 45.40 29.02 46.47 0.86
2525 2643 3.059800 GTCTCGGTTTAGACAACAGTTGC 60.060 47.826 13.56 6.42 44.41 4.17
2533 2651 2.297698 TCCCAGTCTCGGTTTAGACA 57.702 50.000 6.76 0.00 46.89 3.41
2654 2772 0.802607 CCCTCTACGCGTGAAAGCTC 60.803 60.000 24.59 0.00 34.40 4.09
2719 2837 6.515272 ACGTTCATTATCTGCTCCAAAAAT 57.485 33.333 0.00 0.00 0.00 1.82
2757 2875 4.697756 CACGAGCAAAGCCCGGGA 62.698 66.667 29.31 0.00 0.00 5.14
2771 2889 0.318360 TCACGTTCCAGTACTGCACG 60.318 55.000 29.79 29.79 39.85 5.34
2775 2901 1.340248 ACACCTCACGTTCCAGTACTG 59.660 52.381 16.34 16.34 0.00 2.74
2811 2937 7.075741 CCATCAAAACTAAAGTTAAGACGTGG 58.924 38.462 0.00 0.69 37.25 4.94
2817 2943 9.463443 CTTCAACCCATCAAAACTAAAGTTAAG 57.537 33.333 0.00 0.00 37.25 1.85
2830 2957 6.065976 ACAGTGATATCTTCAACCCATCAA 57.934 37.500 3.98 0.00 35.70 2.57
2837 2964 8.779354 ACTAAAAGGACAGTGATATCTTCAAC 57.221 34.615 3.98 0.00 35.70 3.18
2838 2965 8.593679 TGACTAAAAGGACAGTGATATCTTCAA 58.406 33.333 3.98 0.00 35.70 2.69
2839 2966 8.134202 TGACTAAAAGGACAGTGATATCTTCA 57.866 34.615 3.98 0.00 0.00 3.02
2876 3003 2.373169 TCAGAAGGAGTTGCAGACCAAT 59.627 45.455 8.23 0.00 35.55 3.16
2880 3007 3.406764 ACAATCAGAAGGAGTTGCAGAC 58.593 45.455 0.00 0.00 0.00 3.51
2911 3038 5.975693 ATCTTATGCCTCCGTTTCAAAAA 57.024 34.783 0.00 0.00 0.00 1.94
2912 3039 5.975693 AATCTTATGCCTCCGTTTCAAAA 57.024 34.783 0.00 0.00 0.00 2.44
2913 3040 5.975693 AAATCTTATGCCTCCGTTTCAAA 57.024 34.783 0.00 0.00 0.00 2.69
2914 3041 5.355910 GGTAAATCTTATGCCTCCGTTTCAA 59.644 40.000 0.00 0.00 0.00 2.69
2915 3042 4.879545 GGTAAATCTTATGCCTCCGTTTCA 59.120 41.667 0.00 0.00 0.00 2.69
2916 3043 5.123936 AGGTAAATCTTATGCCTCCGTTTC 58.876 41.667 0.00 0.00 0.00 2.78
2917 3044 5.112129 AGGTAAATCTTATGCCTCCGTTT 57.888 39.130 0.00 0.00 0.00 3.60
2918 3045 4.163458 TGAGGTAAATCTTATGCCTCCGTT 59.837 41.667 7.97 0.00 43.64 4.44
2919 3046 3.709653 TGAGGTAAATCTTATGCCTCCGT 59.290 43.478 7.97 0.00 43.64 4.69
2920 3047 4.336889 TGAGGTAAATCTTATGCCTCCG 57.663 45.455 7.97 0.00 43.64 4.63
2921 3048 6.120507 AGATGAGGTAAATCTTATGCCTCC 57.879 41.667 7.97 0.00 43.64 4.30
2954 3081 9.469097 TGTAAAGCTCTAAACTCTATTCTCTCT 57.531 33.333 0.00 0.00 0.00 3.10
2958 3085 9.810545 GTCATGTAAAGCTCTAAACTCTATTCT 57.189 33.333 0.00 0.00 0.00 2.40
2959 3086 9.587772 TGTCATGTAAAGCTCTAAACTCTATTC 57.412 33.333 0.00 0.00 0.00 1.75
2960 3087 9.372369 GTGTCATGTAAAGCTCTAAACTCTATT 57.628 33.333 0.00 0.00 0.00 1.73
2961 3088 7.982354 GGTGTCATGTAAAGCTCTAAACTCTAT 59.018 37.037 0.00 0.00 0.00 1.98
2962 3089 7.321153 GGTGTCATGTAAAGCTCTAAACTCTA 58.679 38.462 0.00 0.00 0.00 2.43
2963 3090 6.166982 GGTGTCATGTAAAGCTCTAAACTCT 58.833 40.000 0.00 0.00 0.00 3.24
2964 3091 5.351740 GGGTGTCATGTAAAGCTCTAAACTC 59.648 44.000 0.00 0.00 0.00 3.01
2965 3092 5.246307 GGGTGTCATGTAAAGCTCTAAACT 58.754 41.667 0.00 0.00 0.00 2.66
2966 3093 4.395231 GGGGTGTCATGTAAAGCTCTAAAC 59.605 45.833 0.00 0.00 0.00 2.01
2967 3094 4.042311 TGGGGTGTCATGTAAAGCTCTAAA 59.958 41.667 0.00 0.00 0.00 1.85
2968 3095 3.585289 TGGGGTGTCATGTAAAGCTCTAA 59.415 43.478 0.00 0.00 0.00 2.10
2969 3096 3.178046 TGGGGTGTCATGTAAAGCTCTA 58.822 45.455 0.00 0.00 0.00 2.43
2970 3097 1.985159 TGGGGTGTCATGTAAAGCTCT 59.015 47.619 0.00 0.00 0.00 4.09
2971 3098 2.489938 TGGGGTGTCATGTAAAGCTC 57.510 50.000 0.00 0.00 0.00 4.09
2972 3099 3.265737 TGTATGGGGTGTCATGTAAAGCT 59.734 43.478 0.00 0.00 0.00 3.74
2973 3100 3.616219 TGTATGGGGTGTCATGTAAAGC 58.384 45.455 0.00 0.00 0.00 3.51
2974 3101 4.096382 GCTTGTATGGGGTGTCATGTAAAG 59.904 45.833 0.00 0.00 0.00 1.85
2975 3102 4.013728 GCTTGTATGGGGTGTCATGTAAA 58.986 43.478 0.00 0.00 0.00 2.01
2976 3103 3.616219 GCTTGTATGGGGTGTCATGTAA 58.384 45.455 0.00 0.00 0.00 2.41
2977 3104 2.419436 CGCTTGTATGGGGTGTCATGTA 60.419 50.000 0.00 0.00 0.00 2.29
2978 3105 1.678728 CGCTTGTATGGGGTGTCATGT 60.679 52.381 0.00 0.00 0.00 3.21
2979 3106 1.016627 CGCTTGTATGGGGTGTCATG 58.983 55.000 0.00 0.00 0.00 3.07
2980 3107 0.908910 TCGCTTGTATGGGGTGTCAT 59.091 50.000 0.00 0.00 0.00 3.06
2981 3108 0.036765 GTCGCTTGTATGGGGTGTCA 60.037 55.000 0.00 0.00 0.00 3.58
2982 3109 0.036765 TGTCGCTTGTATGGGGTGTC 60.037 55.000 0.00 0.00 0.00 3.67
2983 3110 0.618458 ATGTCGCTTGTATGGGGTGT 59.382 50.000 0.00 0.00 0.00 4.16
2984 3111 1.016627 CATGTCGCTTGTATGGGGTG 58.983 55.000 0.00 0.00 0.00 4.61
2985 3112 0.908910 TCATGTCGCTTGTATGGGGT 59.091 50.000 0.00 0.00 0.00 4.95
2986 3113 1.299541 GTCATGTCGCTTGTATGGGG 58.700 55.000 0.00 0.00 0.00 4.96
2987 3114 2.022764 TGTCATGTCGCTTGTATGGG 57.977 50.000 0.00 0.00 0.00 4.00
2988 3115 4.621068 AATTGTCATGTCGCTTGTATGG 57.379 40.909 0.00 0.00 0.00 2.74
2989 3116 6.035975 TGAGTAATTGTCATGTCGCTTGTATG 59.964 38.462 0.00 0.00 0.00 2.39
2990 3117 6.036083 GTGAGTAATTGTCATGTCGCTTGTAT 59.964 38.462 0.00 0.00 0.00 2.29
2991 3118 5.347635 GTGAGTAATTGTCATGTCGCTTGTA 59.652 40.000 0.00 0.00 0.00 2.41
2992 3119 4.152402 GTGAGTAATTGTCATGTCGCTTGT 59.848 41.667 0.00 0.00 0.00 3.16
2993 3120 4.152223 TGTGAGTAATTGTCATGTCGCTTG 59.848 41.667 0.00 0.00 0.00 4.01
2994 3121 4.314961 TGTGAGTAATTGTCATGTCGCTT 58.685 39.130 0.00 0.00 0.00 4.68
2995 3122 3.925379 TGTGAGTAATTGTCATGTCGCT 58.075 40.909 0.00 0.00 0.00 4.93
2996 3123 4.864916 ATGTGAGTAATTGTCATGTCGC 57.135 40.909 0.00 0.00 0.00 5.19
2997 3124 6.885735 TGTATGTGAGTAATTGTCATGTCG 57.114 37.500 0.00 0.00 0.00 4.35
2998 3125 8.882736 TCATTGTATGTGAGTAATTGTCATGTC 58.117 33.333 0.00 0.00 0.00 3.06
2999 3126 8.791327 TCATTGTATGTGAGTAATTGTCATGT 57.209 30.769 0.00 0.00 0.00 3.21
3004 3131 9.547753 GGACTATCATTGTATGTGAGTAATTGT 57.452 33.333 0.00 0.00 0.00 2.71
3005 3132 8.993121 GGGACTATCATTGTATGTGAGTAATTG 58.007 37.037 0.00 0.00 0.00 2.32
3006 3133 8.938883 AGGGACTATCATTGTATGTGAGTAATT 58.061 33.333 0.00 0.00 36.02 1.40
3007 3134 8.497910 AGGGACTATCATTGTATGTGAGTAAT 57.502 34.615 0.00 0.00 36.02 1.89
3008 3135 7.914427 AGGGACTATCATTGTATGTGAGTAA 57.086 36.000 0.00 0.00 36.02 2.24
3009 3136 7.176865 GCTAGGGACTATCATTGTATGTGAGTA 59.823 40.741 0.00 0.00 41.70 2.59
3010 3137 6.015010 GCTAGGGACTATCATTGTATGTGAGT 60.015 42.308 0.00 0.00 41.70 3.41
3011 3138 6.210385 AGCTAGGGACTATCATTGTATGTGAG 59.790 42.308 0.00 0.00 41.70 3.51
3012 3139 6.077993 AGCTAGGGACTATCATTGTATGTGA 58.922 40.000 0.00 0.00 41.70 3.58
3013 3140 6.352016 AGCTAGGGACTATCATTGTATGTG 57.648 41.667 0.00 0.00 41.70 3.21
3014 3141 6.784969 AGAAGCTAGGGACTATCATTGTATGT 59.215 38.462 0.00 0.00 41.70 2.29
3015 3142 7.238486 AGAAGCTAGGGACTATCATTGTATG 57.762 40.000 0.00 0.00 41.70 2.39
3016 3143 7.256475 CCAAGAAGCTAGGGACTATCATTGTAT 60.256 40.741 0.00 0.00 41.70 2.29
3017 3144 6.042093 CCAAGAAGCTAGGGACTATCATTGTA 59.958 42.308 0.00 0.00 41.70 2.41
3018 3145 5.163258 CCAAGAAGCTAGGGACTATCATTGT 60.163 44.000 0.00 0.00 41.70 2.71
3019 3146 5.303971 CCAAGAAGCTAGGGACTATCATTG 58.696 45.833 0.00 0.00 41.70 2.82
3020 3147 4.202409 GCCAAGAAGCTAGGGACTATCATT 60.202 45.833 0.00 0.00 41.70 2.57
3021 3148 3.326297 GCCAAGAAGCTAGGGACTATCAT 59.674 47.826 0.00 0.00 41.70 2.45
3022 3149 2.700897 GCCAAGAAGCTAGGGACTATCA 59.299 50.000 0.00 0.00 41.70 2.15
3023 3150 2.288518 CGCCAAGAAGCTAGGGACTATC 60.289 54.545 0.00 0.00 41.70 2.08
3024 3151 1.689273 CGCCAAGAAGCTAGGGACTAT 59.311 52.381 0.00 0.00 41.70 2.12
3025 3152 1.112113 CGCCAAGAAGCTAGGGACTA 58.888 55.000 0.00 0.00 41.75 2.59
3026 3153 1.901085 CGCCAAGAAGCTAGGGACT 59.099 57.895 0.00 0.00 46.37 3.85
3027 3154 1.815840 GCGCCAAGAAGCTAGGGAC 60.816 63.158 0.00 0.00 0.00 4.46
3028 3155 2.584608 GCGCCAAGAAGCTAGGGA 59.415 61.111 0.00 0.00 0.00 4.20
3029 3156 2.514824 GGCGCCAAGAAGCTAGGG 60.515 66.667 24.80 0.00 0.00 3.53
3030 3157 2.892425 CGGCGCCAAGAAGCTAGG 60.892 66.667 28.98 0.98 0.00 3.02
3031 3158 2.892425 CCGGCGCCAAGAAGCTAG 60.892 66.667 28.98 6.19 0.00 3.42
3035 3162 3.950794 TACTGCCGGCGCCAAGAAG 62.951 63.158 28.98 22.87 0.00 2.85
3036 3163 3.538785 TTACTGCCGGCGCCAAGAA 62.539 57.895 28.98 11.03 0.00 2.52
3037 3164 4.010224 TTACTGCCGGCGCCAAGA 62.010 61.111 28.98 7.75 0.00 3.02
3038 3165 3.799755 GTTACTGCCGGCGCCAAG 61.800 66.667 28.98 22.06 0.00 3.61
3042 3169 3.743534 TATGGGTTACTGCCGGCGC 62.744 63.158 23.90 9.04 0.00 6.53
3043 3170 1.153329 TTATGGGTTACTGCCGGCG 60.153 57.895 23.90 18.98 0.00 6.46
3044 3171 0.107361 AGTTATGGGTTACTGCCGGC 60.107 55.000 22.73 22.73 0.00 6.13
3045 3172 2.413310 AAGTTATGGGTTACTGCCGG 57.587 50.000 0.00 0.00 0.00 6.13
3046 3173 2.159435 GCAAAGTTATGGGTTACTGCCG 60.159 50.000 0.00 0.00 0.00 5.69
3047 3174 2.165641 GGCAAAGTTATGGGTTACTGCC 59.834 50.000 0.00 0.00 0.00 4.85
3048 3175 3.089284 AGGCAAAGTTATGGGTTACTGC 58.911 45.455 0.00 0.00 0.00 4.40
3049 3176 4.156008 GTGAGGCAAAGTTATGGGTTACTG 59.844 45.833 0.00 0.00 0.00 2.74
3050 3177 4.332828 GTGAGGCAAAGTTATGGGTTACT 58.667 43.478 0.00 0.00 0.00 2.24
3051 3178 3.442625 GGTGAGGCAAAGTTATGGGTTAC 59.557 47.826 0.00 0.00 0.00 2.50
3052 3179 3.074687 TGGTGAGGCAAAGTTATGGGTTA 59.925 43.478 0.00 0.00 0.00 2.85
3053 3180 2.158385 TGGTGAGGCAAAGTTATGGGTT 60.158 45.455 0.00 0.00 0.00 4.11
3054 3181 1.427368 TGGTGAGGCAAAGTTATGGGT 59.573 47.619 0.00 0.00 0.00 4.51
3055 3182 2.214376 TGGTGAGGCAAAGTTATGGG 57.786 50.000 0.00 0.00 0.00 4.00
3056 3183 3.763360 TCATTGGTGAGGCAAAGTTATGG 59.237 43.478 0.00 0.00 0.00 2.74
3057 3184 5.345702 CATCATTGGTGAGGCAAAGTTATG 58.654 41.667 0.00 0.00 37.87 1.90
3058 3185 4.403432 CCATCATTGGTGAGGCAAAGTTAT 59.597 41.667 0.00 0.00 37.87 1.89
3059 3186 3.763360 CCATCATTGGTGAGGCAAAGTTA 59.237 43.478 0.00 0.00 37.87 2.24
3060 3187 2.564062 CCATCATTGGTGAGGCAAAGTT 59.436 45.455 0.00 0.00 37.87 2.66
3061 3188 2.173519 CCATCATTGGTGAGGCAAAGT 58.826 47.619 0.00 0.00 37.87 2.66
3062 3189 2.953466 CCATCATTGGTGAGGCAAAG 57.047 50.000 0.00 0.00 37.87 2.77
3073 3200 5.533903 CCTATTCTCCTCCAAACCATCATTG 59.466 44.000 0.00 0.00 0.00 2.82
3074 3201 5.699143 CCTATTCTCCTCCAAACCATCATT 58.301 41.667 0.00 0.00 0.00 2.57
3075 3202 4.446889 GCCTATTCTCCTCCAAACCATCAT 60.447 45.833 0.00 0.00 0.00 2.45
3076 3203 3.117888 GCCTATTCTCCTCCAAACCATCA 60.118 47.826 0.00 0.00 0.00 3.07
3077 3204 3.481453 GCCTATTCTCCTCCAAACCATC 58.519 50.000 0.00 0.00 0.00 3.51
3078 3205 2.158755 CGCCTATTCTCCTCCAAACCAT 60.159 50.000 0.00 0.00 0.00 3.55
3079 3206 1.209504 CGCCTATTCTCCTCCAAACCA 59.790 52.381 0.00 0.00 0.00 3.67
3080 3207 1.475213 CCGCCTATTCTCCTCCAAACC 60.475 57.143 0.00 0.00 0.00 3.27
3081 3208 1.209747 ACCGCCTATTCTCCTCCAAAC 59.790 52.381 0.00 0.00 0.00 2.93
3082 3209 1.209504 CACCGCCTATTCTCCTCCAAA 59.790 52.381 0.00 0.00 0.00 3.28
3083 3210 0.830648 CACCGCCTATTCTCCTCCAA 59.169 55.000 0.00 0.00 0.00 3.53
3084 3211 1.048724 CCACCGCCTATTCTCCTCCA 61.049 60.000 0.00 0.00 0.00 3.86
3085 3212 1.749033 CCACCGCCTATTCTCCTCC 59.251 63.158 0.00 0.00 0.00 4.30
3086 3213 1.069935 GCCACCGCCTATTCTCCTC 59.930 63.158 0.00 0.00 0.00 3.71
3087 3214 2.797278 CGCCACCGCCTATTCTCCT 61.797 63.158 0.00 0.00 0.00 3.69
3088 3215 2.280186 CGCCACCGCCTATTCTCC 60.280 66.667 0.00 0.00 0.00 3.71
3106 3233 5.290885 GCTAGGGTATTTCGGCAAAAATTTG 59.709 40.000 1.52 1.52 41.03 2.32
3107 3234 5.046950 TGCTAGGGTATTTCGGCAAAAATTT 60.047 36.000 1.45 0.00 31.50 1.82
3108 3235 4.464597 TGCTAGGGTATTTCGGCAAAAATT 59.535 37.500 1.45 0.00 31.50 1.82
3109 3236 4.020543 TGCTAGGGTATTTCGGCAAAAAT 58.979 39.130 0.00 1.76 33.54 1.82
3110 3237 3.422796 TGCTAGGGTATTTCGGCAAAAA 58.577 40.909 0.00 0.00 0.00 1.94
3111 3238 3.074675 TGCTAGGGTATTTCGGCAAAA 57.925 42.857 0.00 0.00 0.00 2.44
3112 3239 2.791347 TGCTAGGGTATTTCGGCAAA 57.209 45.000 0.00 0.00 0.00 3.68
3113 3240 3.290948 AATGCTAGGGTATTTCGGCAA 57.709 42.857 0.00 0.00 33.44 4.52
3114 3241 3.211045 GAAATGCTAGGGTATTTCGGCA 58.789 45.455 4.43 0.00 41.80 5.69
3115 3242 3.898517 GAAATGCTAGGGTATTTCGGC 57.101 47.619 4.43 0.00 41.80 5.54
3129 3256 1.913403 CATTTGGAACGAGCGAAATGC 59.087 47.619 13.18 0.00 46.98 3.56
3130 3257 2.095263 ACCATTTGGAACGAGCGAAATG 60.095 45.455 16.35 16.35 41.04 2.32
3131 3258 2.159382 ACCATTTGGAACGAGCGAAAT 58.841 42.857 3.01 0.00 38.94 2.17
3132 3259 1.533731 GACCATTTGGAACGAGCGAAA 59.466 47.619 3.01 0.00 38.94 3.46
3133 3260 1.153353 GACCATTTGGAACGAGCGAA 58.847 50.000 3.01 0.00 38.94 4.70
3134 3261 0.672401 GGACCATTTGGAACGAGCGA 60.672 55.000 3.01 0.00 38.94 4.93
3135 3262 0.953471 TGGACCATTTGGAACGAGCG 60.953 55.000 3.01 0.00 38.94 5.03
3136 3263 1.200020 CTTGGACCATTTGGAACGAGC 59.800 52.381 3.01 0.00 38.94 5.03
3137 3264 2.744202 CTCTTGGACCATTTGGAACGAG 59.256 50.000 3.01 5.13 38.94 4.18
3138 3265 2.552155 CCTCTTGGACCATTTGGAACGA 60.552 50.000 3.01 0.00 38.94 3.85
3139 3266 1.812571 CCTCTTGGACCATTTGGAACG 59.187 52.381 3.01 0.00 38.94 3.95
3140 3267 2.558359 CACCTCTTGGACCATTTGGAAC 59.442 50.000 3.01 0.00 36.44 3.62
3141 3268 2.445145 TCACCTCTTGGACCATTTGGAA 59.555 45.455 3.01 0.71 36.44 3.53
3142 3269 2.040278 CTCACCTCTTGGACCATTTGGA 59.960 50.000 3.01 1.79 36.44 3.53
3143 3270 2.440409 CTCACCTCTTGGACCATTTGG 58.560 52.381 0.00 0.02 37.79 3.28
3144 3271 1.815003 GCTCACCTCTTGGACCATTTG 59.185 52.381 0.00 0.00 37.04 2.32
3145 3272 1.425066 TGCTCACCTCTTGGACCATTT 59.575 47.619 0.00 0.00 37.04 2.32
3146 3273 1.067295 TGCTCACCTCTTGGACCATT 58.933 50.000 0.00 0.00 37.04 3.16
3147 3274 1.064906 CATGCTCACCTCTTGGACCAT 60.065 52.381 0.00 0.00 37.04 3.55
3148 3275 0.325933 CATGCTCACCTCTTGGACCA 59.674 55.000 0.00 0.00 37.04 4.02
3149 3276 0.615331 TCATGCTCACCTCTTGGACC 59.385 55.000 0.00 0.00 37.04 4.46
3150 3277 1.731720 GTCATGCTCACCTCTTGGAC 58.268 55.000 0.00 0.00 37.04 4.02
3151 3278 0.247460 CGTCATGCTCACCTCTTGGA 59.753 55.000 0.00 0.00 37.04 3.53
3152 3279 0.247460 TCGTCATGCTCACCTCTTGG 59.753 55.000 0.00 0.00 39.83 3.61
3153 3280 1.203287 TCTCGTCATGCTCACCTCTTG 59.797 52.381 0.00 0.00 0.00 3.02
3154 3281 1.476085 CTCTCGTCATGCTCACCTCTT 59.524 52.381 0.00 0.00 0.00 2.85
3155 3282 1.102154 CTCTCGTCATGCTCACCTCT 58.898 55.000 0.00 0.00 0.00 3.69
3156 3283 1.065401 CTCTCTCGTCATGCTCACCTC 59.935 57.143 0.00 0.00 0.00 3.85
3157 3284 1.102154 CTCTCTCGTCATGCTCACCT 58.898 55.000 0.00 0.00 0.00 4.00
3158 3285 0.102120 CCTCTCTCGTCATGCTCACC 59.898 60.000 0.00 0.00 0.00 4.02
3159 3286 1.098869 TCCTCTCTCGTCATGCTCAC 58.901 55.000 0.00 0.00 0.00 3.51
3160 3287 1.098869 GTCCTCTCTCGTCATGCTCA 58.901 55.000 0.00 0.00 0.00 4.26
3161 3288 1.098869 TGTCCTCTCTCGTCATGCTC 58.901 55.000 0.00 0.00 0.00 4.26
3162 3289 1.408340 CATGTCCTCTCTCGTCATGCT 59.592 52.381 0.00 0.00 31.49 3.79
3163 3290 1.537776 CCATGTCCTCTCTCGTCATGC 60.538 57.143 0.00 0.00 35.85 4.06
3164 3291 1.537776 GCCATGTCCTCTCTCGTCATG 60.538 57.143 0.00 0.00 36.60 3.07
3165 3292 0.749649 GCCATGTCCTCTCTCGTCAT 59.250 55.000 0.00 0.00 0.00 3.06
3166 3293 0.611896 TGCCATGTCCTCTCTCGTCA 60.612 55.000 0.00 0.00 0.00 4.35
3167 3294 0.749649 ATGCCATGTCCTCTCTCGTC 59.250 55.000 0.00 0.00 0.00 4.20
3168 3295 0.463204 CATGCCATGTCCTCTCTCGT 59.537 55.000 0.00 0.00 0.00 4.18
3169 3296 0.879400 GCATGCCATGTCCTCTCTCG 60.879 60.000 6.36 0.00 0.00 4.04
3170 3297 0.534652 GGCATGCCATGTCCTCTCTC 60.535 60.000 32.08 0.00 35.81 3.20
3171 3298 1.276859 TGGCATGCCATGTCCTCTCT 61.277 55.000 35.59 0.00 41.89 3.10
3172 3299 0.394762 TTGGCATGCCATGTCCTCTC 60.395 55.000 38.78 8.31 46.64 3.20
3173 3300 0.260816 ATTGGCATGCCATGTCCTCT 59.739 50.000 38.78 15.12 46.64 3.69
3174 3301 1.068127 GAATTGGCATGCCATGTCCTC 59.932 52.381 38.78 24.49 46.64 3.71
3175 3302 1.117150 GAATTGGCATGCCATGTCCT 58.883 50.000 38.78 21.11 46.64 3.85
3176 3303 0.249155 CGAATTGGCATGCCATGTCC 60.249 55.000 38.78 24.91 46.64 4.02
3177 3304 0.249155 CCGAATTGGCATGCCATGTC 60.249 55.000 38.78 32.57 46.64 3.06
3178 3305 1.678598 CCCGAATTGGCATGCCATGT 61.679 55.000 38.78 28.60 46.64 3.21
3179 3306 1.068417 CCCGAATTGGCATGCCATG 59.932 57.895 38.78 26.36 46.64 3.66
3180 3307 0.977108 AACCCGAATTGGCATGCCAT 60.977 50.000 38.78 26.22 46.64 4.40
3181 3308 1.190833 AAACCCGAATTGGCATGCCA 61.191 50.000 35.59 35.59 45.63 4.92
3182 3309 0.460109 GAAACCCGAATTGGCATGCC 60.460 55.000 30.54 30.54 35.87 4.40
3183 3310 0.801836 CGAAACCCGAATTGGCATGC 60.802 55.000 9.90 9.90 41.76 4.06
3184 3311 0.179140 CCGAAACCCGAATTGGCATG 60.179 55.000 0.00 0.00 41.76 4.06
3185 3312 0.610785 ACCGAAACCCGAATTGGCAT 60.611 50.000 0.00 0.00 41.76 4.40
3186 3313 1.228306 ACCGAAACCCGAATTGGCA 60.228 52.632 0.00 0.00 41.76 4.92
3187 3314 1.238625 TGACCGAAACCCGAATTGGC 61.239 55.000 0.00 0.00 41.76 4.52
3188 3315 1.400494 GATGACCGAAACCCGAATTGG 59.600 52.381 0.00 0.00 41.76 3.16
3189 3316 1.062002 CGATGACCGAAACCCGAATTG 59.938 52.381 0.00 0.00 41.76 2.32
3190 3317 1.365699 CGATGACCGAAACCCGAATT 58.634 50.000 0.00 0.00 41.76 2.17
3191 3318 0.461339 CCGATGACCGAAACCCGAAT 60.461 55.000 0.00 0.00 41.76 3.34
3192 3319 1.079681 CCGATGACCGAAACCCGAA 60.080 57.895 0.00 0.00 41.76 4.30
3193 3320 0.964860 TACCGATGACCGAAACCCGA 60.965 55.000 0.00 0.00 41.76 5.14
3194 3321 0.803380 GTACCGATGACCGAAACCCG 60.803 60.000 0.00 0.00 41.76 5.28
3195 3322 0.803380 CGTACCGATGACCGAAACCC 60.803 60.000 0.00 0.00 41.76 4.11
3196 3323 1.416050 GCGTACCGATGACCGAAACC 61.416 60.000 0.00 0.00 41.76 3.27
3197 3324 0.457337 AGCGTACCGATGACCGAAAC 60.457 55.000 0.00 0.00 41.76 2.78
3198 3325 0.244450 AAGCGTACCGATGACCGAAA 59.756 50.000 0.00 0.00 41.76 3.46
3199 3326 0.457166 CAAGCGTACCGATGACCGAA 60.457 55.000 0.00 0.00 41.76 4.30
3200 3327 1.138036 CAAGCGTACCGATGACCGA 59.862 57.895 0.00 0.00 41.76 4.69
3201 3328 1.138036 TCAAGCGTACCGATGACCG 59.862 57.895 0.00 0.00 38.18 4.79
3202 3329 2.662150 GTCAAGCGTACCGATGACC 58.338 57.895 10.13 0.00 38.40 4.02
3203 3330 0.804933 GGGTCAAGCGTACCGATGAC 60.805 60.000 11.90 11.90 41.19 3.06
3204 3331 1.252215 TGGGTCAAGCGTACCGATGA 61.252 55.000 0.00 0.00 37.93 2.92
3205 3332 1.082117 GTGGGTCAAGCGTACCGATG 61.082 60.000 0.00 0.00 37.93 3.84
3206 3333 1.217244 GTGGGTCAAGCGTACCGAT 59.783 57.895 0.00 0.00 37.93 4.18
3207 3334 2.652530 GTGGGTCAAGCGTACCGA 59.347 61.111 0.00 0.00 37.93 4.69
3208 3335 2.433664 GGTGGGTCAAGCGTACCG 60.434 66.667 0.00 0.00 37.93 4.02
3209 3336 1.670083 GTGGTGGGTCAAGCGTACC 60.670 63.158 0.00 0.00 36.19 3.34
3210 3337 0.669625 GAGTGGTGGGTCAAGCGTAC 60.670 60.000 0.00 0.00 0.00 3.67
3211 3338 1.669440 GAGTGGTGGGTCAAGCGTA 59.331 57.895 0.00 0.00 0.00 4.42
3212 3339 2.426023 GAGTGGTGGGTCAAGCGT 59.574 61.111 0.00 0.00 0.00 5.07
3213 3340 2.358737 GGAGTGGTGGGTCAAGCG 60.359 66.667 0.00 0.00 0.00 4.68
3214 3341 0.890996 CAAGGAGTGGTGGGTCAAGC 60.891 60.000 0.00 0.00 0.00 4.01
3215 3342 0.764890 TCAAGGAGTGGTGGGTCAAG 59.235 55.000 0.00 0.00 0.00 3.02
3216 3343 0.472471 GTCAAGGAGTGGTGGGTCAA 59.528 55.000 0.00 0.00 0.00 3.18
3217 3344 1.754380 CGTCAAGGAGTGGTGGGTCA 61.754 60.000 0.00 0.00 0.00 4.02
3218 3345 1.004918 CGTCAAGGAGTGGTGGGTC 60.005 63.158 0.00 0.00 0.00 4.46
3219 3346 2.516888 CCGTCAAGGAGTGGTGGGT 61.517 63.158 0.00 0.00 45.00 4.51
3220 3347 2.214216 TCCGTCAAGGAGTGGTGGG 61.214 63.158 0.00 0.00 45.98 4.61
3221 3348 3.466881 TCCGTCAAGGAGTGGTGG 58.533 61.111 0.00 0.00 45.98 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.