Multiple sequence alignment - TraesCS6B01G181400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G181400 chr6B 100.000 2685 0 0 1 2685 203296412 203299096 0.000000e+00 4959
1 TraesCS6B01G181400 chr6B 89.286 448 46 2 1 446 675524930 675524483 7.630000e-156 560
2 TraesCS6B01G181400 chr6B 87.528 449 45 7 1 446 695773927 695774367 2.800000e-140 508
3 TraesCS6B01G181400 chr6B 100.000 101 0 0 3049 3149 203299460 203299560 1.490000e-43 187
4 TraesCS6B01G181400 chr6B 93.137 102 6 1 3049 3149 563319468 563319367 7.040000e-32 148
5 TraesCS6B01G181400 chr6D 91.264 2072 124 30 449 2474 113902109 113904169 0.000000e+00 2771
6 TraesCS6B01G181400 chr6D 95.050 101 5 0 3049 3149 392815091 392814991 3.250000e-35 159
7 TraesCS6B01G181400 chr6D 92.405 79 3 2 2466 2541 113908819 113908897 3.320000e-20 110
8 TraesCS6B01G181400 chr6A 90.084 2138 129 41 449 2541 141850816 141852915 0.000000e+00 2697
9 TraesCS6B01G181400 chr2B 89.556 450 38 8 1 443 799457157 799456710 2.120000e-156 562
10 TraesCS6B01G181400 chr2B 86.739 460 45 13 1 453 728931824 728932274 6.070000e-137 497
11 TraesCS6B01G181400 chr4A 89.333 450 42 6 1 446 704525671 704525224 7.630000e-156 560
12 TraesCS6B01G181400 chr4B 87.751 449 51 4 1 446 603194480 603194033 3.600000e-144 521
13 TraesCS6B01G181400 chr7B 87.963 432 50 2 17 446 185477842 185478273 2.800000e-140 508
14 TraesCS6B01G181400 chr7B 86.414 449 58 3 1 446 240721924 240721476 3.650000e-134 488
15 TraesCS6B01G181400 chr7B 86.260 131 12 6 2558 2685 544882877 544883004 1.520000e-28 137
16 TraesCS6B01G181400 chr3B 86.860 449 55 4 1 445 351177268 351176820 1.690000e-137 499
17 TraesCS6B01G181400 chr5B 100.000 122 0 0 2559 2680 232630995 232631116 3.160000e-55 226
18 TraesCS6B01G181400 chr5B 100.000 98 0 0 3049 3146 232631694 232631791 6.940000e-42 182
19 TraesCS6B01G181400 chr3D 94.309 123 5 2 2558 2680 90306270 90306390 1.490000e-43 187
20 TraesCS6B01G181400 chr3D 95.050 101 5 0 3049 3149 90306710 90306810 3.250000e-35 159
21 TraesCS6B01G181400 chr1B 92.857 126 8 1 2558 2683 63806431 63806307 6.940000e-42 182
22 TraesCS6B01G181400 chr1B 96.429 84 3 0 3066 3149 63806145 63806062 4.240000e-29 139
23 TraesCS6B01G181400 chr1B 84.733 131 16 4 2557 2685 278474449 278474577 9.170000e-26 128
24 TraesCS6B01G181400 chr2D 96.078 102 3 1 3049 3149 112930482 112930381 6.990000e-37 165
25 TraesCS6B01G181400 chr2D 89.683 126 9 3 2558 2683 112930964 112930843 1.170000e-34 158
26 TraesCS6B01G181400 chr7A 90.000 120 11 1 2558 2677 693149621 693149739 1.510000e-33 154
27 TraesCS6B01G181400 chr7A 93.939 99 6 0 3049 3147 693150048 693150146 1.960000e-32 150
28 TraesCS6B01G181400 chr1A 89.431 123 12 1 2558 2680 441757689 441757810 1.510000e-33 154
29 TraesCS6B01G181400 chr1D 91.089 101 9 0 3049 3149 12353634 12353534 1.520000e-28 137
30 TraesCS6B01G181400 chr5D 84.615 130 16 3 2558 2685 410638473 410638600 3.300000e-25 126
31 TraesCS6B01G181400 chr4D 88.235 85 10 0 1210 1294 508529713 508529629 5.560000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G181400 chr6B 203296412 203299560 3148 False 2573 4959 100.000 1 3149 2 chr6B.!!$F2 3148
1 TraesCS6B01G181400 chr6D 113902109 113904169 2060 False 2771 2771 91.264 449 2474 1 chr6D.!!$F1 2025
2 TraesCS6B01G181400 chr6A 141850816 141852915 2099 False 2697 2697 90.084 449 2541 1 chr6A.!!$F1 2092
3 TraesCS6B01G181400 chr5B 232630995 232631791 796 False 204 226 100.000 2559 3146 2 chr5B.!!$F1 587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
241 242 0.031917 TGGAACGGGAGTATAGGGCA 60.032 55.0 0.0 0.0 46.69 5.36 F
483 484 0.389391 CGGCTACGTCATGATCCCTT 59.611 55.0 0.0 0.0 34.81 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1049 1060 0.324275 GGCTATGAAAACCAGGCCCA 60.324 55.0 0.00 0.0 39.85 5.36 R
2302 2360 0.031616 AGGAGCTCGATCCCTTTCCT 60.032 55.0 7.83 0.0 40.53 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.595823 AATAAATGCTCTTTCTCAATCATTTGG 57.404 29.630 7.90 0.00 36.15 3.28
29 30 4.445452 TGCTCTTTCTCAATCATTTGGC 57.555 40.909 0.00 0.00 33.44 4.52
30 31 3.119743 TGCTCTTTCTCAATCATTTGGCG 60.120 43.478 0.00 0.00 33.44 5.69
31 32 3.127548 GCTCTTTCTCAATCATTTGGCGA 59.872 43.478 0.00 0.00 33.44 5.54
32 33 4.730035 GCTCTTTCTCAATCATTTGGCGAG 60.730 45.833 0.00 0.00 33.44 5.03
33 34 4.578871 TCTTTCTCAATCATTTGGCGAGA 58.421 39.130 0.00 0.00 33.44 4.04
34 35 4.633126 TCTTTCTCAATCATTTGGCGAGAG 59.367 41.667 0.00 0.00 33.44 3.20
35 36 3.616956 TCTCAATCATTTGGCGAGAGT 57.383 42.857 0.00 0.00 33.44 3.24
36 37 3.942829 TCTCAATCATTTGGCGAGAGTT 58.057 40.909 0.00 0.00 33.44 3.01
37 38 3.686241 TCTCAATCATTTGGCGAGAGTTG 59.314 43.478 0.00 0.00 33.44 3.16
38 39 2.162208 TCAATCATTTGGCGAGAGTTGC 59.838 45.455 0.00 0.00 33.44 4.17
39 40 0.729116 ATCATTTGGCGAGAGTTGCG 59.271 50.000 0.00 0.00 0.00 4.85
40 41 0.320334 TCATTTGGCGAGAGTTGCGA 60.320 50.000 0.00 0.00 0.00 5.10
41 42 0.729116 CATTTGGCGAGAGTTGCGAT 59.271 50.000 0.00 0.00 0.00 4.58
42 43 0.729116 ATTTGGCGAGAGTTGCGATG 59.271 50.000 0.00 0.00 0.00 3.84
43 44 0.602638 TTTGGCGAGAGTTGCGATGT 60.603 50.000 0.00 0.00 0.00 3.06
44 45 1.014044 TTGGCGAGAGTTGCGATGTC 61.014 55.000 0.00 0.00 0.00 3.06
45 46 2.167861 GGCGAGAGTTGCGATGTCC 61.168 63.158 0.00 0.00 0.00 4.02
46 47 2.508891 GCGAGAGTTGCGATGTCCG 61.509 63.158 0.00 0.00 42.21 4.79
47 48 1.136774 CGAGAGTTGCGATGTCCGA 59.863 57.895 0.00 0.00 41.76 4.55
48 49 0.863538 CGAGAGTTGCGATGTCCGAG 60.864 60.000 0.00 0.00 41.76 4.63
49 50 0.526524 GAGAGTTGCGATGTCCGAGG 60.527 60.000 0.00 0.00 41.76 4.63
50 51 2.125512 AGTTGCGATGTCCGAGGC 60.126 61.111 0.00 0.00 41.76 4.70
51 52 2.434185 GTTGCGATGTCCGAGGCA 60.434 61.111 0.00 0.00 41.76 4.75
52 53 2.125552 TTGCGATGTCCGAGGCAG 60.126 61.111 0.00 0.00 41.76 4.85
53 54 2.645192 TTGCGATGTCCGAGGCAGA 61.645 57.895 0.00 0.00 41.76 4.26
54 55 2.583593 GCGATGTCCGAGGCAGAC 60.584 66.667 0.00 0.00 41.76 3.51
55 56 2.278206 CGATGTCCGAGGCAGACG 60.278 66.667 0.00 0.00 41.76 4.18
94 95 4.827087 CATGCTGGCCTCTCGCGT 62.827 66.667 5.77 0.00 38.94 6.01
95 96 3.147595 ATGCTGGCCTCTCGCGTA 61.148 61.111 5.77 0.00 38.94 4.42
96 97 3.144120 ATGCTGGCCTCTCGCGTAG 62.144 63.158 5.77 5.02 38.94 3.51
120 121 4.814294 GGCCGAATGCGTCGTCCT 62.814 66.667 8.58 0.00 44.53 3.85
123 124 2.395690 CGAATGCGTCGTCCTTGC 59.604 61.111 1.64 0.00 45.09 4.01
124 125 2.395690 GAATGCGTCGTCCTTGCG 59.604 61.111 0.00 0.00 0.00 4.85
182 183 4.543084 GCAAGGAGCCGCGATTGC 62.543 66.667 8.23 12.14 40.99 3.56
183 184 2.821366 CAAGGAGCCGCGATTGCT 60.821 61.111 8.23 8.16 43.03 3.91
184 185 2.045926 AAGGAGCCGCGATTGCTT 60.046 55.556 8.23 9.35 39.69 3.91
185 186 1.089481 CAAGGAGCCGCGATTGCTTA 61.089 55.000 8.23 0.00 39.69 3.09
186 187 1.090052 AAGGAGCCGCGATTGCTTAC 61.090 55.000 8.23 5.54 39.69 2.34
187 188 1.521681 GGAGCCGCGATTGCTTACT 60.522 57.895 8.23 0.00 39.69 2.24
188 189 1.638467 GAGCCGCGATTGCTTACTG 59.362 57.895 8.23 0.00 39.69 2.74
189 190 0.806102 GAGCCGCGATTGCTTACTGA 60.806 55.000 8.23 0.00 39.69 3.41
190 191 1.084370 AGCCGCGATTGCTTACTGAC 61.084 55.000 8.23 0.00 39.65 3.51
191 192 1.631072 CCGCGATTGCTTACTGACG 59.369 57.895 8.23 0.00 39.65 4.35
192 193 1.631072 CGCGATTGCTTACTGACGG 59.369 57.895 0.00 0.00 39.65 4.79
193 194 1.752501 CGCGATTGCTTACTGACGGG 61.753 60.000 0.00 0.00 39.65 5.28
194 195 2.006772 CGATTGCTTACTGACGGGC 58.993 57.895 0.00 0.00 0.00 6.13
195 196 1.752501 CGATTGCTTACTGACGGGCG 61.753 60.000 0.00 0.00 0.00 6.13
196 197 1.429148 GATTGCTTACTGACGGGCGG 61.429 60.000 0.00 0.00 0.00 6.13
197 198 1.895020 ATTGCTTACTGACGGGCGGA 61.895 55.000 0.00 0.00 0.00 5.54
198 199 2.508663 GCTTACTGACGGGCGGAC 60.509 66.667 0.00 0.00 0.00 4.79
199 200 2.202570 CTTACTGACGGGCGGACG 60.203 66.667 0.00 0.00 40.31 4.79
200 201 3.695022 CTTACTGACGGGCGGACGG 62.695 68.421 0.00 0.00 38.39 4.79
220 221 2.202932 CGCAGGAAGACGATGGGG 60.203 66.667 0.00 0.00 0.00 4.96
221 222 2.990479 GCAGGAAGACGATGGGGT 59.010 61.111 0.00 0.00 0.00 4.95
222 223 1.299976 GCAGGAAGACGATGGGGTT 59.700 57.895 0.00 0.00 0.00 4.11
223 224 1.026718 GCAGGAAGACGATGGGGTTG 61.027 60.000 0.00 0.00 0.00 3.77
224 225 0.392998 CAGGAAGACGATGGGGTTGG 60.393 60.000 0.00 0.00 0.00 3.77
225 226 0.546747 AGGAAGACGATGGGGTTGGA 60.547 55.000 0.00 0.00 0.00 3.53
226 227 0.326927 GGAAGACGATGGGGTTGGAA 59.673 55.000 0.00 0.00 0.00 3.53
227 228 1.450025 GAAGACGATGGGGTTGGAAC 58.550 55.000 0.00 0.00 0.00 3.62
228 229 0.321298 AAGACGATGGGGTTGGAACG 60.321 55.000 0.00 0.00 0.00 3.95
229 230 1.743995 GACGATGGGGTTGGAACGG 60.744 63.158 0.00 0.00 0.00 4.44
230 231 2.437716 CGATGGGGTTGGAACGGG 60.438 66.667 0.00 0.00 0.00 5.28
231 232 2.961893 CGATGGGGTTGGAACGGGA 61.962 63.158 0.00 0.00 0.00 5.14
232 233 1.077716 GATGGGGTTGGAACGGGAG 60.078 63.158 0.00 0.00 0.00 4.30
234 235 0.548197 ATGGGGTTGGAACGGGAGTA 60.548 55.000 0.00 0.00 46.69 2.59
235 236 0.548197 TGGGGTTGGAACGGGAGTAT 60.548 55.000 0.00 0.00 46.69 2.12
236 237 1.273724 TGGGGTTGGAACGGGAGTATA 60.274 52.381 0.00 0.00 46.69 1.47
237 238 1.415289 GGGGTTGGAACGGGAGTATAG 59.585 57.143 0.00 0.00 46.69 1.31
238 239 1.415289 GGGTTGGAACGGGAGTATAGG 59.585 57.143 0.00 0.00 46.69 2.57
239 240 1.415289 GGTTGGAACGGGAGTATAGGG 59.585 57.143 0.00 0.00 46.69 3.53
240 241 1.125633 TTGGAACGGGAGTATAGGGC 58.874 55.000 0.00 0.00 46.69 5.19
241 242 0.031917 TGGAACGGGAGTATAGGGCA 60.032 55.000 0.00 0.00 46.69 5.36
242 243 0.680061 GGAACGGGAGTATAGGGCAG 59.320 60.000 0.00 0.00 46.69 4.85
243 244 0.680061 GAACGGGAGTATAGGGCAGG 59.320 60.000 0.00 0.00 46.69 4.85
244 245 0.763223 AACGGGAGTATAGGGCAGGG 60.763 60.000 0.00 0.00 46.69 4.45
245 246 2.584391 CGGGAGTATAGGGCAGGGC 61.584 68.421 0.00 0.00 0.00 5.19
246 247 1.152008 GGGAGTATAGGGCAGGGCT 60.152 63.158 0.00 0.00 0.00 5.19
247 248 1.484444 GGGAGTATAGGGCAGGGCTG 61.484 65.000 0.00 0.00 0.00 4.85
262 263 3.385384 CTGCTGCGGGGAGAGTGA 61.385 66.667 0.00 0.00 35.24 3.41
263 264 3.368190 CTGCTGCGGGGAGAGTGAG 62.368 68.421 0.00 0.00 35.24 3.51
264 265 3.071206 GCTGCGGGGAGAGTGAGA 61.071 66.667 0.00 0.00 0.00 3.27
265 266 3.074999 GCTGCGGGGAGAGTGAGAG 62.075 68.421 0.00 0.00 0.00 3.20
266 267 1.379176 CTGCGGGGAGAGTGAGAGA 60.379 63.158 0.00 0.00 0.00 3.10
267 268 0.967887 CTGCGGGGAGAGTGAGAGAA 60.968 60.000 0.00 0.00 0.00 2.87
268 269 0.541998 TGCGGGGAGAGTGAGAGAAA 60.542 55.000 0.00 0.00 0.00 2.52
269 270 0.608640 GCGGGGAGAGTGAGAGAAAA 59.391 55.000 0.00 0.00 0.00 2.29
270 271 1.002087 GCGGGGAGAGTGAGAGAAAAA 59.998 52.381 0.00 0.00 0.00 1.94
271 272 2.355209 GCGGGGAGAGTGAGAGAAAAAT 60.355 50.000 0.00 0.00 0.00 1.82
272 273 3.265791 CGGGGAGAGTGAGAGAAAAATG 58.734 50.000 0.00 0.00 0.00 2.32
273 274 3.307059 CGGGGAGAGTGAGAGAAAAATGT 60.307 47.826 0.00 0.00 0.00 2.71
274 275 4.006319 GGGGAGAGTGAGAGAAAAATGTG 58.994 47.826 0.00 0.00 0.00 3.21
275 276 4.505742 GGGGAGAGTGAGAGAAAAATGTGT 60.506 45.833 0.00 0.00 0.00 3.72
276 277 5.066593 GGGAGAGTGAGAGAAAAATGTGTT 58.933 41.667 0.00 0.00 0.00 3.32
277 278 5.532779 GGGAGAGTGAGAGAAAAATGTGTTT 59.467 40.000 0.00 0.00 0.00 2.83
278 279 6.039829 GGGAGAGTGAGAGAAAAATGTGTTTT 59.960 38.462 0.00 0.00 39.15 2.43
297 298 4.693042 TTTTTAGTGGTCCCGAGAAGAA 57.307 40.909 0.00 0.00 0.00 2.52
298 299 3.672767 TTTAGTGGTCCCGAGAAGAAC 57.327 47.619 0.00 0.00 0.00 3.01
299 300 2.599408 TAGTGGTCCCGAGAAGAACT 57.401 50.000 0.00 0.00 0.00 3.01
300 301 2.599408 AGTGGTCCCGAGAAGAACTA 57.401 50.000 0.00 0.00 0.00 2.24
301 302 2.885616 AGTGGTCCCGAGAAGAACTAA 58.114 47.619 0.00 0.00 0.00 2.24
302 303 2.561858 AGTGGTCCCGAGAAGAACTAAC 59.438 50.000 0.00 0.00 0.00 2.34
303 304 1.897802 TGGTCCCGAGAAGAACTAACC 59.102 52.381 0.00 0.00 0.00 2.85
304 305 1.206610 GGTCCCGAGAAGAACTAACCC 59.793 57.143 0.00 0.00 0.00 4.11
305 306 1.897802 GTCCCGAGAAGAACTAACCCA 59.102 52.381 0.00 0.00 0.00 4.51
306 307 2.301009 GTCCCGAGAAGAACTAACCCAA 59.699 50.000 0.00 0.00 0.00 4.12
307 308 2.974099 TCCCGAGAAGAACTAACCCAAA 59.026 45.455 0.00 0.00 0.00 3.28
308 309 3.585732 TCCCGAGAAGAACTAACCCAAAT 59.414 43.478 0.00 0.00 0.00 2.32
309 310 4.778958 TCCCGAGAAGAACTAACCCAAATA 59.221 41.667 0.00 0.00 0.00 1.40
310 311 5.248934 TCCCGAGAAGAACTAACCCAAATAA 59.751 40.000 0.00 0.00 0.00 1.40
311 312 5.585047 CCCGAGAAGAACTAACCCAAATAAG 59.415 44.000 0.00 0.00 0.00 1.73
312 313 5.064834 CCGAGAAGAACTAACCCAAATAAGC 59.935 44.000 0.00 0.00 0.00 3.09
313 314 5.642063 CGAGAAGAACTAACCCAAATAAGCA 59.358 40.000 0.00 0.00 0.00 3.91
314 315 6.316390 CGAGAAGAACTAACCCAAATAAGCAT 59.684 38.462 0.00 0.00 0.00 3.79
315 316 7.466050 CGAGAAGAACTAACCCAAATAAGCATC 60.466 40.741 0.00 0.00 0.00 3.91
316 317 7.406104 AGAAGAACTAACCCAAATAAGCATCT 58.594 34.615 0.00 0.00 0.00 2.90
317 318 7.554476 AGAAGAACTAACCCAAATAAGCATCTC 59.446 37.037 0.00 0.00 0.00 2.75
318 319 6.963322 AGAACTAACCCAAATAAGCATCTCT 58.037 36.000 0.00 0.00 0.00 3.10
319 320 7.406104 AGAACTAACCCAAATAAGCATCTCTT 58.594 34.615 0.00 0.00 38.79 2.85
320 321 7.337942 AGAACTAACCCAAATAAGCATCTCTTG 59.662 37.037 0.00 0.00 36.25 3.02
321 322 5.888161 ACTAACCCAAATAAGCATCTCTTGG 59.112 40.000 0.00 0.00 36.25 3.61
322 323 4.591321 ACCCAAATAAGCATCTCTTGGA 57.409 40.909 0.73 0.00 39.12 3.53
323 324 5.134725 ACCCAAATAAGCATCTCTTGGAT 57.865 39.130 0.73 0.00 39.12 3.41
360 361 9.998106 TTTAAGTAGGTTAGATGCATCTAATCC 57.002 33.333 38.49 35.72 46.69 3.01
361 362 7.618019 AAGTAGGTTAGATGCATCTAATCCA 57.382 36.000 38.49 30.06 46.69 3.41
362 363 7.618019 AGTAGGTTAGATGCATCTAATCCAA 57.382 36.000 38.49 29.53 46.69 3.53
363 364 8.034313 AGTAGGTTAGATGCATCTAATCCAAA 57.966 34.615 38.49 29.15 46.69 3.28
364 365 7.934120 AGTAGGTTAGATGCATCTAATCCAAAC 59.066 37.037 38.49 33.88 46.69 2.93
365 366 6.662755 AGGTTAGATGCATCTAATCCAAACA 58.337 36.000 38.49 21.09 46.69 2.83
366 367 7.118723 AGGTTAGATGCATCTAATCCAAACAA 58.881 34.615 38.49 21.85 46.69 2.83
367 368 7.067494 AGGTTAGATGCATCTAATCCAAACAAC 59.933 37.037 38.49 28.60 46.69 3.32
368 369 5.841957 AGATGCATCTAATCCAAACAACC 57.158 39.130 27.73 0.00 34.85 3.77
369 370 5.513233 AGATGCATCTAATCCAAACAACCT 58.487 37.500 27.73 0.00 34.85 3.50
370 371 5.954150 AGATGCATCTAATCCAAACAACCTT 59.046 36.000 27.73 0.00 34.85 3.50
371 372 6.438425 AGATGCATCTAATCCAAACAACCTTT 59.562 34.615 27.73 0.00 34.85 3.11
372 373 6.024552 TGCATCTAATCCAAACAACCTTTC 57.975 37.500 0.00 0.00 0.00 2.62
373 374 5.047377 TGCATCTAATCCAAACAACCTTTCC 60.047 40.000 0.00 0.00 0.00 3.13
374 375 5.185828 GCATCTAATCCAAACAACCTTTCCT 59.814 40.000 0.00 0.00 0.00 3.36
375 376 6.624423 CATCTAATCCAAACAACCTTTCCTG 58.376 40.000 0.00 0.00 0.00 3.86
376 377 5.701224 TCTAATCCAAACAACCTTTCCTGT 58.299 37.500 0.00 0.00 0.00 4.00
377 378 6.133356 TCTAATCCAAACAACCTTTCCTGTT 58.867 36.000 0.00 0.00 37.36 3.16
378 379 5.692115 AATCCAAACAACCTTTCCTGTTT 57.308 34.783 0.00 0.00 44.53 2.83
387 388 9.679661 AAACAACCTTTCCTGTTTGAATATTTT 57.320 25.926 0.00 0.00 42.62 1.82
388 389 9.679661 AACAACCTTTCCTGTTTGAATATTTTT 57.320 25.926 0.00 0.00 31.76 1.94
389 390 9.108284 ACAACCTTTCCTGTTTGAATATTTTTG 57.892 29.630 0.00 0.00 0.00 2.44
390 391 8.558700 CAACCTTTCCTGTTTGAATATTTTTGG 58.441 33.333 0.00 0.00 0.00 3.28
391 392 7.223584 ACCTTTCCTGTTTGAATATTTTTGGG 58.776 34.615 0.00 0.00 0.00 4.12
392 393 7.147391 ACCTTTCCTGTTTGAATATTTTTGGGT 60.147 33.333 0.00 0.00 0.00 4.51
393 394 7.719193 CCTTTCCTGTTTGAATATTTTTGGGTT 59.281 33.333 0.00 0.00 0.00 4.11
394 395 9.771534 CTTTCCTGTTTGAATATTTTTGGGTTA 57.228 29.630 0.00 0.00 0.00 2.85
395 396 9.771534 TTTCCTGTTTGAATATTTTTGGGTTAG 57.228 29.630 0.00 0.00 0.00 2.34
396 397 8.485578 TCCTGTTTGAATATTTTTGGGTTAGT 57.514 30.769 0.00 0.00 0.00 2.24
397 398 8.929487 TCCTGTTTGAATATTTTTGGGTTAGTT 58.071 29.630 0.00 0.00 0.00 2.24
398 399 8.987890 CCTGTTTGAATATTTTTGGGTTAGTTG 58.012 33.333 0.00 0.00 0.00 3.16
399 400 9.757227 CTGTTTGAATATTTTTGGGTTAGTTGA 57.243 29.630 0.00 0.00 0.00 3.18
400 401 9.757227 TGTTTGAATATTTTTGGGTTAGTTGAG 57.243 29.630 0.00 0.00 0.00 3.02
401 402 9.758651 GTTTGAATATTTTTGGGTTAGTTGAGT 57.241 29.630 0.00 0.00 0.00 3.41
402 403 9.974980 TTTGAATATTTTTGGGTTAGTTGAGTC 57.025 29.630 0.00 0.00 0.00 3.36
403 404 8.117813 TGAATATTTTTGGGTTAGTTGAGTCC 57.882 34.615 0.00 0.00 0.00 3.85
404 405 7.726291 TGAATATTTTTGGGTTAGTTGAGTCCA 59.274 33.333 0.00 0.00 0.00 4.02
405 406 8.485578 AATATTTTTGGGTTAGTTGAGTCCAA 57.514 30.769 0.00 0.00 35.91 3.53
406 407 6.800072 ATTTTTGGGTTAGTTGAGTCCAAA 57.200 33.333 0.00 0.00 43.23 3.28
407 408 5.585820 TTTTGGGTTAGTTGAGTCCAAAC 57.414 39.130 5.46 0.00 44.18 2.93
408 409 4.513406 TTGGGTTAGTTGAGTCCAAACT 57.487 40.909 1.87 1.87 38.88 2.66
409 410 5.633655 TTGGGTTAGTTGAGTCCAAACTA 57.366 39.130 0.15 0.15 35.28 2.24
410 411 5.633655 TGGGTTAGTTGAGTCCAAACTAA 57.366 39.130 10.32 10.32 35.28 2.24
411 412 5.617252 TGGGTTAGTTGAGTCCAAACTAAG 58.383 41.667 13.39 0.00 35.28 2.18
412 413 4.454847 GGGTTAGTTGAGTCCAAACTAAGC 59.545 45.833 23.88 23.88 39.76 3.09
413 414 5.306394 GGTTAGTTGAGTCCAAACTAAGCT 58.694 41.667 24.27 3.18 38.87 3.74
414 415 6.461640 GGTTAGTTGAGTCCAAACTAAGCTA 58.538 40.000 24.27 4.31 38.87 3.32
415 416 6.932960 GGTTAGTTGAGTCCAAACTAAGCTAA 59.067 38.462 24.27 7.11 37.34 3.09
416 417 7.443272 GGTTAGTTGAGTCCAAACTAAGCTAAA 59.557 37.037 24.27 4.82 39.83 1.85
417 418 6.862711 AGTTGAGTCCAAACTAAGCTAAAC 57.137 37.500 0.00 0.00 35.28 2.01
418 419 6.592870 AGTTGAGTCCAAACTAAGCTAAACT 58.407 36.000 0.00 0.00 35.28 2.66
419 420 7.732996 AGTTGAGTCCAAACTAAGCTAAACTA 58.267 34.615 0.00 0.00 35.28 2.24
420 421 8.208903 AGTTGAGTCCAAACTAAGCTAAACTAA 58.791 33.333 0.00 0.00 35.28 2.24
421 422 7.958053 TGAGTCCAAACTAAGCTAAACTAAC 57.042 36.000 0.00 0.00 35.28 2.34
422 423 7.732996 TGAGTCCAAACTAAGCTAAACTAACT 58.267 34.615 0.00 0.00 35.28 2.24
423 424 7.871463 TGAGTCCAAACTAAGCTAAACTAACTC 59.129 37.037 0.00 0.00 35.28 3.01
424 425 7.964624 AGTCCAAACTAAGCTAAACTAACTCT 58.035 34.615 0.00 0.00 32.59 3.24
425 426 9.086758 AGTCCAAACTAAGCTAAACTAACTCTA 57.913 33.333 0.00 0.00 32.59 2.43
426 427 9.702494 GTCCAAACTAAGCTAAACTAACTCTAA 57.298 33.333 0.00 0.00 0.00 2.10
427 428 9.702494 TCCAAACTAAGCTAAACTAACTCTAAC 57.298 33.333 0.00 0.00 0.00 2.34
428 429 8.933807 CCAAACTAAGCTAAACTAACTCTAACC 58.066 37.037 0.00 0.00 0.00 2.85
429 430 9.708092 CAAACTAAGCTAAACTAACTCTAACCT 57.292 33.333 0.00 0.00 0.00 3.50
433 434 9.968870 CTAAGCTAAACTAACTCTAACCTATGG 57.031 37.037 0.00 0.00 0.00 2.74
434 435 8.605325 AAGCTAAACTAACTCTAACCTATGGA 57.395 34.615 0.00 0.00 0.00 3.41
435 436 8.785184 AGCTAAACTAACTCTAACCTATGGAT 57.215 34.615 0.00 0.00 0.00 3.41
436 437 8.643324 AGCTAAACTAACTCTAACCTATGGATG 58.357 37.037 0.00 0.00 0.00 3.51
437 438 7.385478 GCTAAACTAACTCTAACCTATGGATGC 59.615 40.741 0.00 0.00 0.00 3.91
438 439 6.808321 AACTAACTCTAACCTATGGATGCA 57.192 37.500 0.00 0.00 0.00 3.96
439 440 6.808321 ACTAACTCTAACCTATGGATGCAA 57.192 37.500 0.00 0.00 0.00 4.08
440 441 7.195374 ACTAACTCTAACCTATGGATGCAAA 57.805 36.000 0.00 0.00 0.00 3.68
441 442 7.048512 ACTAACTCTAACCTATGGATGCAAAC 58.951 38.462 0.00 0.00 0.00 2.93
442 443 5.435686 ACTCTAACCTATGGATGCAAACA 57.564 39.130 0.00 0.00 0.00 2.83
443 444 5.431765 ACTCTAACCTATGGATGCAAACAG 58.568 41.667 0.00 0.00 0.00 3.16
444 445 4.780815 TCTAACCTATGGATGCAAACAGG 58.219 43.478 10.21 10.21 0.00 4.00
445 446 2.442236 ACCTATGGATGCAAACAGGG 57.558 50.000 14.58 2.52 0.00 4.45
446 447 1.640670 ACCTATGGATGCAAACAGGGT 59.359 47.619 14.58 12.36 0.00 4.34
447 448 2.849943 ACCTATGGATGCAAACAGGGTA 59.150 45.455 14.58 0.00 0.00 3.69
450 451 4.895297 CCTATGGATGCAAACAGGGTAAAT 59.105 41.667 0.00 0.00 0.00 1.40
453 454 2.831526 GGATGCAAACAGGGTAAATGGT 59.168 45.455 0.00 0.00 0.00 3.55
476 477 2.954868 GCGACCGGCTACGTCATG 60.955 66.667 0.00 0.00 39.11 3.07
483 484 0.389391 CGGCTACGTCATGATCCCTT 59.611 55.000 0.00 0.00 34.81 3.95
517 518 4.306391 TGATCAAATCCTGACCCTCCATA 58.694 43.478 0.00 0.00 36.69 2.74
531 532 2.301296 CCTCCATATCAGATCAAGCGGT 59.699 50.000 0.00 0.00 0.00 5.68
538 539 3.953712 TCAGATCAAGCGGTTCTGTTA 57.046 42.857 12.98 0.00 41.86 2.41
556 557 3.508012 TGTTAAGTTGCATTTATGGCGGT 59.492 39.130 0.00 0.00 0.00 5.68
582 583 3.478274 GGGCAGCCAGCTAGCTCT 61.478 66.667 16.15 7.26 42.61 4.09
590 595 3.191162 CAGCCAGCTAGCTCTCATACTAG 59.809 52.174 16.15 0.00 42.61 2.57
591 596 3.153919 GCCAGCTAGCTCTCATACTAGT 58.846 50.000 16.15 0.00 38.50 2.57
593 598 4.155280 GCCAGCTAGCTCTCATACTAGTAC 59.845 50.000 16.15 0.00 38.50 2.73
596 601 6.263392 CCAGCTAGCTCTCATACTAGTACAAA 59.737 42.308 16.15 0.00 38.50 2.83
609 614 3.012934 AGTACAAAACTGCCCACTTGT 57.987 42.857 0.00 0.00 36.93 3.16
611 616 4.219143 GTACAAAACTGCCCACTTGTAC 57.781 45.455 7.87 7.87 43.85 2.90
650 655 0.598158 GTACAACACGGCGAGGAACA 60.598 55.000 16.62 0.00 0.00 3.18
680 685 0.399949 ATAAGATCGAGCCCCACCCA 60.400 55.000 0.00 0.00 0.00 4.51
739 744 2.128853 AAACCGCACGCTCCACATTG 62.129 55.000 0.00 0.00 0.00 2.82
807 812 1.226717 GGAGCTGGACTACGCTTCG 60.227 63.158 0.00 0.00 36.45 3.79
813 818 2.506438 GACTACGCTTCGCCGCTT 60.506 61.111 0.00 0.00 0.00 4.68
870 875 5.511545 CCTCTTTAAATATCCTCCACCCGAG 60.512 48.000 0.00 0.00 38.46 4.63
991 999 2.363018 TCTGCCGTCTCCCCTCTG 60.363 66.667 0.00 0.00 0.00 3.35
1071 1082 1.032114 GCCTGGTTTTCATAGCCGCT 61.032 55.000 0.00 0.00 0.00 5.52
1086 1101 2.279069 CGCTAGCGATCCATCCCCT 61.279 63.158 32.98 0.00 42.83 4.79
1117 1132 4.704103 AGGCAGAGGCTGGTCGGA 62.704 66.667 0.00 0.00 40.87 4.55
1133 1148 2.289547 GTCGGAGGATCGAGAAGAGAAG 59.710 54.545 0.00 0.00 40.01 2.85
1134 1149 1.001815 CGGAGGATCGAGAAGAGAAGC 60.002 57.143 0.00 0.00 34.37 3.86
1136 1151 2.034558 GGAGGATCGAGAAGAGAAGCTG 59.965 54.545 0.00 0.00 34.37 4.24
1137 1152 1.408702 AGGATCGAGAAGAGAAGCTGC 59.591 52.381 0.00 0.00 0.00 5.25
1841 1863 3.341202 ATCTCCCTCCCGTCGACGT 62.341 63.158 33.49 11.51 37.74 4.34
1864 1887 2.494059 CGAACAAGGAAGAAGGAAGCA 58.506 47.619 0.00 0.00 0.00 3.91
1931 1954 6.223351 AGTTCGTTTGTTTAATTTTCCCCA 57.777 33.333 0.00 0.00 0.00 4.96
1997 2047 8.706322 ATTCCTTCATCATGAATTCATCATCA 57.294 30.769 18.16 0.00 45.91 3.07
1998 2048 8.706322 TTCCTTCATCATGAATTCATCATCAT 57.294 30.769 18.16 5.58 45.91 2.45
2001 2051 6.267496 TCATCATGAATTCATCATCATGGC 57.733 37.500 18.16 0.00 45.91 4.40
2023 2073 5.393027 GGCGGCAAAAGATCTTCTCATTTTA 60.393 40.000 8.78 0.00 0.00 1.52
2024 2074 6.268566 GCGGCAAAAGATCTTCTCATTTTAT 58.731 36.000 8.78 0.00 0.00 1.40
2048 2098 1.182385 TTGGTTTTCCGGATGGTGGC 61.182 55.000 4.15 0.00 44.36 5.01
2069 2126 4.156739 GGCAAAAGATCTTGTGGTTAGGAG 59.843 45.833 24.07 0.00 0.00 3.69
2071 2128 4.576330 AAAGATCTTGTGGTTAGGAGGG 57.424 45.455 9.17 0.00 0.00 4.30
2077 2134 2.365105 TGGTTAGGAGGGGCGAGG 60.365 66.667 0.00 0.00 0.00 4.63
2199 2257 3.288964 AGAATGTCGACGATACCTTCCT 58.711 45.455 11.62 0.00 0.00 3.36
2262 2320 1.918609 GTGGCTGTCGACGTTAATCTC 59.081 52.381 11.62 0.00 0.00 2.75
2295 2353 3.719144 GCCGCGGCGTACTTGTTT 61.719 61.111 37.24 0.00 0.00 2.83
2296 2354 2.940561 CCGCGGCGTACTTGTTTT 59.059 55.556 22.00 0.00 0.00 2.43
2297 2355 1.280444 CCGCGGCGTACTTGTTTTT 59.720 52.632 22.00 0.00 0.00 1.94
2299 2357 0.316360 CGCGGCGTACTTGTTTTTGT 60.316 50.000 15.36 0.00 0.00 2.83
2300 2358 1.830086 GCGGCGTACTTGTTTTTGTT 58.170 45.000 9.37 0.00 0.00 2.83
2301 2359 1.776897 GCGGCGTACTTGTTTTTGTTC 59.223 47.619 9.37 0.00 0.00 3.18
2302 2360 2.791849 GCGGCGTACTTGTTTTTGTTCA 60.792 45.455 9.37 0.00 0.00 3.18
2303 2361 3.033185 CGGCGTACTTGTTTTTGTTCAG 58.967 45.455 0.00 0.00 0.00 3.02
2304 2362 3.368495 GGCGTACTTGTTTTTGTTCAGG 58.632 45.455 0.00 0.00 0.00 3.86
2305 2363 3.065648 GGCGTACTTGTTTTTGTTCAGGA 59.934 43.478 0.00 0.00 0.00 3.86
2306 2364 4.439016 GGCGTACTTGTTTTTGTTCAGGAA 60.439 41.667 0.00 0.00 0.00 3.36
2320 2378 0.105778 CAGGAAAGGGATCGAGCTCC 59.894 60.000 8.47 0.00 34.31 4.70
2355 2417 2.643272 GTCGGTCGCTGTCTGTCA 59.357 61.111 0.00 0.00 0.00 3.58
2416 2486 3.936203 GCACACACCGTCCTCCCA 61.936 66.667 0.00 0.00 0.00 4.37
2426 2496 1.379309 GTCCTCCCAGAGAGCGAGT 60.379 63.158 0.00 0.00 41.74 4.18
2481 2558 3.190535 AGCTTGCCGTGAATATTTCGTTT 59.809 39.130 11.15 0.00 0.00 3.60
2489 2566 6.238266 GCCGTGAATATTTCGTTTGAGGAATA 60.238 38.462 11.15 0.00 0.00 1.75
2490 2567 7.519970 GCCGTGAATATTTCGTTTGAGGAATAT 60.520 37.037 11.15 0.00 0.00 1.28
2491 2568 7.798516 CCGTGAATATTTCGTTTGAGGAATATG 59.201 37.037 11.15 0.00 0.00 1.78
2493 2570 9.651718 GTGAATATTTCGTTTGAGGAATATGTC 57.348 33.333 0.00 0.00 0.00 3.06
2494 2571 9.613428 TGAATATTTCGTTTGAGGAATATGTCT 57.387 29.630 0.00 0.00 0.00 3.41
2495 2572 9.869844 GAATATTTCGTTTGAGGAATATGTCTG 57.130 33.333 0.00 0.00 0.00 3.51
2497 2574 3.186909 TCGTTTGAGGAATATGTCTGCG 58.813 45.455 0.00 0.00 0.00 5.18
2498 2575 3.119280 TCGTTTGAGGAATATGTCTGCGA 60.119 43.478 0.00 0.00 0.00 5.10
2524 2604 3.624861 CCATCTCGAGGAAACATGGAAAG 59.375 47.826 20.24 0.00 0.00 2.62
2532 2612 5.048782 CGAGGAAACATGGAAAGTGAATTGA 60.049 40.000 0.00 0.00 0.00 2.57
2541 2621 9.480053 ACATGGAAAGTGAATTGAAATTTACTG 57.520 29.630 12.36 4.64 42.29 2.74
2542 2622 9.695526 CATGGAAAGTGAATTGAAATTTACTGA 57.304 29.630 12.36 1.29 42.29 3.41
2544 2624 9.748708 TGGAAAGTGAATTGAAATTTACTGAAG 57.251 29.630 12.36 0.00 42.29 3.02
2545 2625 9.196552 GGAAAGTGAATTGAAATTTACTGAAGG 57.803 33.333 12.36 0.00 42.29 3.46
2546 2626 9.196552 GAAAGTGAATTGAAATTTACTGAAGGG 57.803 33.333 12.36 0.00 42.29 3.95
2547 2627 7.232118 AGTGAATTGAAATTTACTGAAGGGG 57.768 36.000 11.20 0.00 41.77 4.79
2548 2628 7.010160 AGTGAATTGAAATTTACTGAAGGGGA 58.990 34.615 11.20 0.00 41.77 4.81
2549 2629 7.508977 AGTGAATTGAAATTTACTGAAGGGGAA 59.491 33.333 11.20 0.00 41.77 3.97
2550 2630 8.314021 GTGAATTGAAATTTACTGAAGGGGAAT 58.686 33.333 0.00 0.00 33.55 3.01
2551 2631 8.879227 TGAATTGAAATTTACTGAAGGGGAATT 58.121 29.630 0.00 0.00 0.00 2.17
2556 2636 8.682710 TGAAATTTACTGAAGGGGAATTAATCG 58.317 33.333 0.00 0.00 0.00 3.34
2557 2637 7.582667 AATTTACTGAAGGGGAATTAATCGG 57.417 36.000 0.00 0.00 0.00 4.18
2680 2760 1.284198 GGTTCCCCCTTACCTTCTTCC 59.716 57.143 0.00 0.00 0.00 3.46
2683 2763 0.831307 CCCCCTTACCTTCTTCCTCG 59.169 60.000 0.00 0.00 0.00 4.63
2684 2764 0.178301 CCCCTTACCTTCTTCCTCGC 59.822 60.000 0.00 0.00 0.00 5.03
3146 3435 1.358759 CGTGCAGGTCCCAAAACAC 59.641 57.895 0.00 0.00 0.00 3.32
3147 3436 1.358759 GTGCAGGTCCCAAAACACG 59.641 57.895 0.00 0.00 0.00 4.49
3148 3437 1.826054 TGCAGGTCCCAAAACACGG 60.826 57.895 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.595823 CCAAATGATTGAGAAAGAGCATTTATT 57.404 29.630 0.00 0.00 38.94 1.40
4 5 7.037438 GCCAAATGATTGAGAAAGAGCATTTA 58.963 34.615 0.00 0.00 38.94 1.40
5 6 5.873164 GCCAAATGATTGAGAAAGAGCATTT 59.127 36.000 0.00 0.00 38.94 2.32
6 7 5.416947 GCCAAATGATTGAGAAAGAGCATT 58.583 37.500 0.00 0.00 38.94 3.56
7 8 4.439700 CGCCAAATGATTGAGAAAGAGCAT 60.440 41.667 0.00 0.00 38.94 3.79
8 9 3.119743 CGCCAAATGATTGAGAAAGAGCA 60.120 43.478 0.00 0.00 38.94 4.26
9 10 3.127548 TCGCCAAATGATTGAGAAAGAGC 59.872 43.478 0.00 0.00 38.94 4.09
10 11 4.633126 TCTCGCCAAATGATTGAGAAAGAG 59.367 41.667 0.00 0.00 38.94 2.85
11 12 4.578871 TCTCGCCAAATGATTGAGAAAGA 58.421 39.130 0.00 0.00 38.94 2.52
12 13 4.394300 ACTCTCGCCAAATGATTGAGAAAG 59.606 41.667 0.00 0.00 38.94 2.62
13 14 4.326826 ACTCTCGCCAAATGATTGAGAAA 58.673 39.130 0.00 0.00 38.94 2.52
14 15 3.942829 ACTCTCGCCAAATGATTGAGAA 58.057 40.909 0.00 0.00 38.94 2.87
15 16 3.616956 ACTCTCGCCAAATGATTGAGA 57.383 42.857 0.00 0.00 38.94 3.27
16 17 3.730061 GCAACTCTCGCCAAATGATTGAG 60.730 47.826 0.00 0.00 38.94 3.02
17 18 2.162208 GCAACTCTCGCCAAATGATTGA 59.838 45.455 0.00 0.00 38.94 2.57
18 19 2.523015 GCAACTCTCGCCAAATGATTG 58.477 47.619 0.00 0.00 36.25 2.67
19 20 1.131126 CGCAACTCTCGCCAAATGATT 59.869 47.619 0.00 0.00 0.00 2.57
20 21 0.729116 CGCAACTCTCGCCAAATGAT 59.271 50.000 0.00 0.00 0.00 2.45
21 22 0.320334 TCGCAACTCTCGCCAAATGA 60.320 50.000 0.00 0.00 0.00 2.57
22 23 0.729116 ATCGCAACTCTCGCCAAATG 59.271 50.000 0.00 0.00 0.00 2.32
23 24 0.729116 CATCGCAACTCTCGCCAAAT 59.271 50.000 0.00 0.00 0.00 2.32
24 25 0.602638 ACATCGCAACTCTCGCCAAA 60.603 50.000 0.00 0.00 0.00 3.28
25 26 1.005037 ACATCGCAACTCTCGCCAA 60.005 52.632 0.00 0.00 0.00 4.52
26 27 1.446099 GACATCGCAACTCTCGCCA 60.446 57.895 0.00 0.00 0.00 5.69
27 28 2.167861 GGACATCGCAACTCTCGCC 61.168 63.158 0.00 0.00 0.00 5.54
28 29 2.508891 CGGACATCGCAACTCTCGC 61.509 63.158 0.00 0.00 0.00 5.03
29 30 0.863538 CTCGGACATCGCAACTCTCG 60.864 60.000 0.00 0.00 39.05 4.04
30 31 0.526524 CCTCGGACATCGCAACTCTC 60.527 60.000 0.00 0.00 39.05 3.20
31 32 1.513158 CCTCGGACATCGCAACTCT 59.487 57.895 0.00 0.00 39.05 3.24
32 33 2.167861 GCCTCGGACATCGCAACTC 61.168 63.158 0.00 0.00 39.05 3.01
33 34 2.125512 GCCTCGGACATCGCAACT 60.126 61.111 0.00 0.00 39.05 3.16
34 35 2.434185 TGCCTCGGACATCGCAAC 60.434 61.111 0.00 0.00 39.05 4.17
35 36 2.125552 CTGCCTCGGACATCGCAA 60.126 61.111 0.00 0.00 39.05 4.85
36 37 3.068064 TCTGCCTCGGACATCGCA 61.068 61.111 0.00 0.00 39.05 5.10
37 38 2.583593 GTCTGCCTCGGACATCGC 60.584 66.667 1.22 0.00 39.36 4.58
38 39 2.278206 CGTCTGCCTCGGACATCG 60.278 66.667 6.60 0.00 39.51 3.84
77 78 3.430565 TACGCGAGAGGCCAGCATG 62.431 63.158 15.93 0.00 38.94 4.06
78 79 3.144120 CTACGCGAGAGGCCAGCAT 62.144 63.158 15.93 0.00 38.94 3.79
79 80 3.826754 CTACGCGAGAGGCCAGCA 61.827 66.667 15.93 0.00 38.94 4.41
81 82 4.577246 GGCTACGCGAGAGGCCAG 62.577 72.222 15.93 0.00 45.72 4.85
107 108 2.395690 CGCAAGGACGACGCATTC 59.604 61.111 0.00 0.00 34.06 2.67
165 166 4.543084 GCAATCGCGGCTCCTTGC 62.543 66.667 6.13 10.54 37.44 4.01
166 167 1.089481 TAAGCAATCGCGGCTCCTTG 61.089 55.000 6.13 4.19 45.49 3.61
167 168 1.090052 GTAAGCAATCGCGGCTCCTT 61.090 55.000 6.13 7.23 45.49 3.36
168 169 1.521681 GTAAGCAATCGCGGCTCCT 60.522 57.895 6.13 0.00 45.49 3.69
169 170 1.521681 AGTAAGCAATCGCGGCTCC 60.522 57.895 6.13 1.87 45.49 4.70
170 171 0.806102 TCAGTAAGCAATCGCGGCTC 60.806 55.000 6.13 0.00 45.49 4.70
171 172 1.084370 GTCAGTAAGCAATCGCGGCT 61.084 55.000 6.13 3.94 45.49 5.52
172 173 1.348594 GTCAGTAAGCAATCGCGGC 59.651 57.895 6.13 0.89 45.49 6.53
173 174 1.631072 CGTCAGTAAGCAATCGCGG 59.369 57.895 6.13 0.00 45.49 6.46
174 175 1.631072 CCGTCAGTAAGCAATCGCG 59.369 57.895 0.00 0.00 45.49 5.87
175 176 2.006772 CCCGTCAGTAAGCAATCGC 58.993 57.895 0.00 0.00 38.99 4.58
176 177 1.752501 CGCCCGTCAGTAAGCAATCG 61.753 60.000 0.00 0.00 0.00 3.34
177 178 1.429148 CCGCCCGTCAGTAAGCAATC 61.429 60.000 0.00 0.00 0.00 2.67
178 179 1.449601 CCGCCCGTCAGTAAGCAAT 60.450 57.895 0.00 0.00 0.00 3.56
179 180 2.047655 CCGCCCGTCAGTAAGCAA 60.048 61.111 0.00 0.00 0.00 3.91
180 181 2.992689 TCCGCCCGTCAGTAAGCA 60.993 61.111 0.00 0.00 0.00 3.91
181 182 2.508663 GTCCGCCCGTCAGTAAGC 60.509 66.667 0.00 0.00 0.00 3.09
182 183 2.202570 CGTCCGCCCGTCAGTAAG 60.203 66.667 0.00 0.00 0.00 2.34
183 184 3.751246 CCGTCCGCCCGTCAGTAA 61.751 66.667 0.00 0.00 0.00 2.24
199 200 4.162690 ATCGTCTTCCTGCGGCCC 62.163 66.667 0.00 0.00 0.00 5.80
200 201 2.892425 CATCGTCTTCCTGCGGCC 60.892 66.667 0.00 0.00 0.00 6.13
201 202 2.892425 CCATCGTCTTCCTGCGGC 60.892 66.667 0.00 0.00 0.00 6.53
202 203 2.202932 CCCATCGTCTTCCTGCGG 60.203 66.667 0.00 0.00 0.00 5.69
203 204 2.202932 CCCCATCGTCTTCCTGCG 60.203 66.667 0.00 0.00 0.00 5.18
204 205 1.026718 CAACCCCATCGTCTTCCTGC 61.027 60.000 0.00 0.00 0.00 4.85
205 206 0.392998 CCAACCCCATCGTCTTCCTG 60.393 60.000 0.00 0.00 0.00 3.86
206 207 0.546747 TCCAACCCCATCGTCTTCCT 60.547 55.000 0.00 0.00 0.00 3.36
207 208 0.326927 TTCCAACCCCATCGTCTTCC 59.673 55.000 0.00 0.00 0.00 3.46
208 209 1.450025 GTTCCAACCCCATCGTCTTC 58.550 55.000 0.00 0.00 0.00 2.87
209 210 0.321298 CGTTCCAACCCCATCGTCTT 60.321 55.000 0.00 0.00 0.00 3.01
210 211 1.295423 CGTTCCAACCCCATCGTCT 59.705 57.895 0.00 0.00 0.00 4.18
211 212 1.743995 CCGTTCCAACCCCATCGTC 60.744 63.158 0.00 0.00 0.00 4.20
212 213 2.349755 CCGTTCCAACCCCATCGT 59.650 61.111 0.00 0.00 0.00 3.73
213 214 2.437716 CCCGTTCCAACCCCATCG 60.438 66.667 0.00 0.00 0.00 3.84
214 215 1.077716 CTCCCGTTCCAACCCCATC 60.078 63.158 0.00 0.00 0.00 3.51
215 216 0.548197 TACTCCCGTTCCAACCCCAT 60.548 55.000 0.00 0.00 0.00 4.00
216 217 0.548197 ATACTCCCGTTCCAACCCCA 60.548 55.000 0.00 0.00 0.00 4.96
217 218 1.415289 CTATACTCCCGTTCCAACCCC 59.585 57.143 0.00 0.00 0.00 4.95
218 219 1.415289 CCTATACTCCCGTTCCAACCC 59.585 57.143 0.00 0.00 0.00 4.11
219 220 1.415289 CCCTATACTCCCGTTCCAACC 59.585 57.143 0.00 0.00 0.00 3.77
220 221 1.202615 GCCCTATACTCCCGTTCCAAC 60.203 57.143 0.00 0.00 0.00 3.77
221 222 1.125633 GCCCTATACTCCCGTTCCAA 58.874 55.000 0.00 0.00 0.00 3.53
222 223 0.031917 TGCCCTATACTCCCGTTCCA 60.032 55.000 0.00 0.00 0.00 3.53
223 224 0.680061 CTGCCCTATACTCCCGTTCC 59.320 60.000 0.00 0.00 0.00 3.62
224 225 0.680061 CCTGCCCTATACTCCCGTTC 59.320 60.000 0.00 0.00 0.00 3.95
225 226 0.763223 CCCTGCCCTATACTCCCGTT 60.763 60.000 0.00 0.00 0.00 4.44
226 227 1.152312 CCCTGCCCTATACTCCCGT 60.152 63.158 0.00 0.00 0.00 5.28
227 228 2.584391 GCCCTGCCCTATACTCCCG 61.584 68.421 0.00 0.00 0.00 5.14
228 229 1.152008 AGCCCTGCCCTATACTCCC 60.152 63.158 0.00 0.00 0.00 4.30
229 230 2.062070 CAGCCCTGCCCTATACTCC 58.938 63.158 0.00 0.00 0.00 3.85
245 246 3.368190 CTCACTCTCCCCGCAGCAG 62.368 68.421 0.00 0.00 0.00 4.24
246 247 3.385384 CTCACTCTCCCCGCAGCA 61.385 66.667 0.00 0.00 0.00 4.41
247 248 3.071206 TCTCACTCTCCCCGCAGC 61.071 66.667 0.00 0.00 0.00 5.25
248 249 0.967887 TTCTCTCACTCTCCCCGCAG 60.968 60.000 0.00 0.00 0.00 5.18
249 250 0.541998 TTTCTCTCACTCTCCCCGCA 60.542 55.000 0.00 0.00 0.00 5.69
250 251 0.608640 TTTTCTCTCACTCTCCCCGC 59.391 55.000 0.00 0.00 0.00 6.13
251 252 3.265791 CATTTTTCTCTCACTCTCCCCG 58.734 50.000 0.00 0.00 0.00 5.73
252 253 4.006319 CACATTTTTCTCTCACTCTCCCC 58.994 47.826 0.00 0.00 0.00 4.81
253 254 4.646572 ACACATTTTTCTCTCACTCTCCC 58.353 43.478 0.00 0.00 0.00 4.30
254 255 6.625873 AAACACATTTTTCTCTCACTCTCC 57.374 37.500 0.00 0.00 0.00 3.71
276 277 4.102054 AGTTCTTCTCGGGACCACTAAAAA 59.898 41.667 0.00 0.00 0.00 1.94
277 278 3.644738 AGTTCTTCTCGGGACCACTAAAA 59.355 43.478 0.00 0.00 0.00 1.52
278 279 3.236896 AGTTCTTCTCGGGACCACTAAA 58.763 45.455 0.00 0.00 0.00 1.85
279 280 2.885616 AGTTCTTCTCGGGACCACTAA 58.114 47.619 0.00 0.00 0.00 2.24
280 281 2.599408 AGTTCTTCTCGGGACCACTA 57.401 50.000 0.00 0.00 0.00 2.74
281 282 2.561858 GTTAGTTCTTCTCGGGACCACT 59.438 50.000 0.00 0.00 0.00 4.00
282 283 2.353505 GGTTAGTTCTTCTCGGGACCAC 60.354 54.545 0.00 0.00 0.00 4.16
283 284 1.897802 GGTTAGTTCTTCTCGGGACCA 59.102 52.381 0.00 0.00 0.00 4.02
284 285 1.206610 GGGTTAGTTCTTCTCGGGACC 59.793 57.143 0.00 0.00 0.00 4.46
285 286 1.897802 TGGGTTAGTTCTTCTCGGGAC 59.102 52.381 0.00 0.00 0.00 4.46
286 287 2.314071 TGGGTTAGTTCTTCTCGGGA 57.686 50.000 0.00 0.00 0.00 5.14
287 288 3.412237 TTTGGGTTAGTTCTTCTCGGG 57.588 47.619 0.00 0.00 0.00 5.14
288 289 5.064834 GCTTATTTGGGTTAGTTCTTCTCGG 59.935 44.000 0.00 0.00 0.00 4.63
289 290 5.642063 TGCTTATTTGGGTTAGTTCTTCTCG 59.358 40.000 0.00 0.00 0.00 4.04
290 291 7.554476 AGATGCTTATTTGGGTTAGTTCTTCTC 59.446 37.037 0.00 0.00 0.00 2.87
291 292 7.406104 AGATGCTTATTTGGGTTAGTTCTTCT 58.594 34.615 0.00 0.00 0.00 2.85
292 293 7.554476 AGAGATGCTTATTTGGGTTAGTTCTTC 59.446 37.037 0.00 0.00 0.00 2.87
293 294 7.406104 AGAGATGCTTATTTGGGTTAGTTCTT 58.594 34.615 0.00 0.00 0.00 2.52
294 295 6.963322 AGAGATGCTTATTTGGGTTAGTTCT 58.037 36.000 0.00 0.00 0.00 3.01
295 296 7.415653 CCAAGAGATGCTTATTTGGGTTAGTTC 60.416 40.741 0.00 0.00 35.71 3.01
296 297 6.378280 CCAAGAGATGCTTATTTGGGTTAGTT 59.622 38.462 0.00 0.00 35.71 2.24
297 298 5.888161 CCAAGAGATGCTTATTTGGGTTAGT 59.112 40.000 0.00 0.00 35.71 2.24
298 299 6.122277 TCCAAGAGATGCTTATTTGGGTTAG 58.878 40.000 2.12 0.00 38.98 2.34
299 300 6.073447 TCCAAGAGATGCTTATTTGGGTTA 57.927 37.500 2.12 0.00 38.98 2.85
300 301 4.934356 TCCAAGAGATGCTTATTTGGGTT 58.066 39.130 2.12 0.00 38.98 4.11
301 302 4.591321 TCCAAGAGATGCTTATTTGGGT 57.409 40.909 2.12 0.00 38.98 4.51
302 303 5.449107 CATCCAAGAGATGCTTATTTGGG 57.551 43.478 2.12 0.00 45.76 4.12
345 346 6.662755 AGGTTGTTTGGATTAGATGCATCTA 58.337 36.000 28.69 28.69 38.32 1.98
346 347 5.513233 AGGTTGTTTGGATTAGATGCATCT 58.487 37.500 30.85 30.85 40.86 2.90
347 348 5.841957 AGGTTGTTTGGATTAGATGCATC 57.158 39.130 19.37 19.37 0.00 3.91
348 349 6.351286 GGAAAGGTTGTTTGGATTAGATGCAT 60.351 38.462 0.00 0.00 0.00 3.96
349 350 5.047377 GGAAAGGTTGTTTGGATTAGATGCA 60.047 40.000 0.00 0.00 0.00 3.96
350 351 5.185828 AGGAAAGGTTGTTTGGATTAGATGC 59.814 40.000 0.00 0.00 0.00 3.91
351 352 6.209391 ACAGGAAAGGTTGTTTGGATTAGATG 59.791 38.462 0.00 0.00 0.00 2.90
352 353 6.314917 ACAGGAAAGGTTGTTTGGATTAGAT 58.685 36.000 0.00 0.00 0.00 1.98
353 354 5.701224 ACAGGAAAGGTTGTTTGGATTAGA 58.299 37.500 0.00 0.00 0.00 2.10
354 355 6.405278 AACAGGAAAGGTTGTTTGGATTAG 57.595 37.500 0.00 0.00 34.00 1.73
355 356 6.800072 AAACAGGAAAGGTTGTTTGGATTA 57.200 33.333 2.17 0.00 43.66 1.75
356 357 5.692115 AAACAGGAAAGGTTGTTTGGATT 57.308 34.783 2.17 0.00 43.66 3.01
361 362 9.679661 AAAATATTCAAACAGGAAAGGTTGTTT 57.320 25.926 0.00 0.00 45.56 2.83
362 363 9.679661 AAAAATATTCAAACAGGAAAGGTTGTT 57.320 25.926 0.00 0.00 39.08 2.83
363 364 9.108284 CAAAAATATTCAAACAGGAAAGGTTGT 57.892 29.630 0.00 0.00 0.00 3.32
364 365 8.558700 CCAAAAATATTCAAACAGGAAAGGTTG 58.441 33.333 0.00 0.00 0.00 3.77
365 366 7.719193 CCCAAAAATATTCAAACAGGAAAGGTT 59.281 33.333 0.00 0.00 0.00 3.50
366 367 7.147391 ACCCAAAAATATTCAAACAGGAAAGGT 60.147 33.333 0.00 0.00 0.00 3.50
367 368 7.223584 ACCCAAAAATATTCAAACAGGAAAGG 58.776 34.615 0.00 0.00 0.00 3.11
368 369 8.675705 AACCCAAAAATATTCAAACAGGAAAG 57.324 30.769 0.00 0.00 0.00 2.62
369 370 9.771534 CTAACCCAAAAATATTCAAACAGGAAA 57.228 29.630 0.00 0.00 0.00 3.13
370 371 8.929487 ACTAACCCAAAAATATTCAAACAGGAA 58.071 29.630 0.00 0.00 0.00 3.36
371 372 8.485578 ACTAACCCAAAAATATTCAAACAGGA 57.514 30.769 0.00 0.00 0.00 3.86
372 373 8.987890 CAACTAACCCAAAAATATTCAAACAGG 58.012 33.333 0.00 0.00 0.00 4.00
373 374 9.757227 TCAACTAACCCAAAAATATTCAAACAG 57.243 29.630 0.00 0.00 0.00 3.16
374 375 9.757227 CTCAACTAACCCAAAAATATTCAAACA 57.243 29.630 0.00 0.00 0.00 2.83
375 376 9.758651 ACTCAACTAACCCAAAAATATTCAAAC 57.241 29.630 0.00 0.00 0.00 2.93
376 377 9.974980 GACTCAACTAACCCAAAAATATTCAAA 57.025 29.630 0.00 0.00 0.00 2.69
377 378 8.581578 GGACTCAACTAACCCAAAAATATTCAA 58.418 33.333 0.00 0.00 0.00 2.69
378 379 7.726291 TGGACTCAACTAACCCAAAAATATTCA 59.274 33.333 0.00 0.00 0.00 2.57
379 380 8.117813 TGGACTCAACTAACCCAAAAATATTC 57.882 34.615 0.00 0.00 0.00 1.75
380 381 8.485578 TTGGACTCAACTAACCCAAAAATATT 57.514 30.769 0.00 0.00 34.33 1.28
381 382 8.364894 GTTTGGACTCAACTAACCCAAAAATAT 58.635 33.333 0.00 0.00 45.12 1.28
382 383 7.562088 AGTTTGGACTCAACTAACCCAAAAATA 59.438 33.333 0.00 0.00 45.12 1.40
383 384 6.382859 AGTTTGGACTCAACTAACCCAAAAAT 59.617 34.615 0.00 0.00 45.12 1.82
384 385 5.717654 AGTTTGGACTCAACTAACCCAAAAA 59.282 36.000 0.00 0.00 45.12 1.94
385 386 5.265989 AGTTTGGACTCAACTAACCCAAAA 58.734 37.500 0.00 0.00 45.12 2.44
386 387 4.862371 AGTTTGGACTCAACTAACCCAAA 58.138 39.130 0.00 0.00 42.53 3.28
387 388 4.513406 AGTTTGGACTCAACTAACCCAA 57.487 40.909 0.00 0.00 35.33 4.12
388 389 5.617252 CTTAGTTTGGACTCAACTAACCCA 58.383 41.667 1.91 0.00 37.33 4.51
389 390 4.454847 GCTTAGTTTGGACTCAACTAACCC 59.545 45.833 1.91 0.00 37.33 4.11
390 391 5.306394 AGCTTAGTTTGGACTCAACTAACC 58.694 41.667 1.91 0.00 37.33 2.85
391 392 7.958053 TTAGCTTAGTTTGGACTCAACTAAC 57.042 36.000 0.00 0.00 37.33 2.34
392 393 8.208903 AGTTTAGCTTAGTTTGGACTCAACTAA 58.791 33.333 0.00 5.41 37.33 2.24
393 394 7.732996 AGTTTAGCTTAGTTTGGACTCAACTA 58.267 34.615 0.00 0.00 37.33 2.24
394 395 6.592870 AGTTTAGCTTAGTTTGGACTCAACT 58.407 36.000 0.00 0.00 37.33 3.16
395 396 6.862711 AGTTTAGCTTAGTTTGGACTCAAC 57.137 37.500 0.00 0.00 37.33 3.18
396 397 8.208903 AGTTAGTTTAGCTTAGTTTGGACTCAA 58.791 33.333 0.00 0.00 37.33 3.02
397 398 7.732996 AGTTAGTTTAGCTTAGTTTGGACTCA 58.267 34.615 0.00 0.00 37.33 3.41
398 399 8.089597 AGAGTTAGTTTAGCTTAGTTTGGACTC 58.910 37.037 0.00 0.00 37.33 3.36
399 400 7.964624 AGAGTTAGTTTAGCTTAGTTTGGACT 58.035 34.615 0.00 0.00 39.97 3.85
400 401 9.702494 TTAGAGTTAGTTTAGCTTAGTTTGGAC 57.298 33.333 0.00 0.00 0.00 4.02
401 402 9.702494 GTTAGAGTTAGTTTAGCTTAGTTTGGA 57.298 33.333 0.00 0.00 0.00 3.53
402 403 8.933807 GGTTAGAGTTAGTTTAGCTTAGTTTGG 58.066 37.037 0.00 0.00 0.00 3.28
403 404 9.708092 AGGTTAGAGTTAGTTTAGCTTAGTTTG 57.292 33.333 0.00 0.00 0.00 2.93
407 408 9.968870 CCATAGGTTAGAGTTAGTTTAGCTTAG 57.031 37.037 0.00 0.00 0.00 2.18
408 409 9.705103 TCCATAGGTTAGAGTTAGTTTAGCTTA 57.295 33.333 0.00 0.00 0.00 3.09
409 410 8.605325 TCCATAGGTTAGAGTTAGTTTAGCTT 57.395 34.615 0.00 0.00 0.00 3.74
410 411 8.643324 CATCCATAGGTTAGAGTTAGTTTAGCT 58.357 37.037 0.00 0.00 0.00 3.32
411 412 7.385478 GCATCCATAGGTTAGAGTTAGTTTAGC 59.615 40.741 0.00 0.00 0.00 3.09
412 413 8.421784 TGCATCCATAGGTTAGAGTTAGTTTAG 58.578 37.037 0.00 0.00 0.00 1.85
413 414 8.313944 TGCATCCATAGGTTAGAGTTAGTTTA 57.686 34.615 0.00 0.00 0.00 2.01
414 415 7.195374 TGCATCCATAGGTTAGAGTTAGTTT 57.805 36.000 0.00 0.00 0.00 2.66
415 416 6.808321 TGCATCCATAGGTTAGAGTTAGTT 57.192 37.500 0.00 0.00 0.00 2.24
416 417 6.808321 TTGCATCCATAGGTTAGAGTTAGT 57.192 37.500 0.00 0.00 0.00 2.24
417 418 7.047891 TGTTTGCATCCATAGGTTAGAGTTAG 58.952 38.462 0.00 0.00 0.00 2.34
418 419 6.953101 TGTTTGCATCCATAGGTTAGAGTTA 58.047 36.000 0.00 0.00 0.00 2.24
419 420 5.815581 TGTTTGCATCCATAGGTTAGAGTT 58.184 37.500 0.00 0.00 0.00 3.01
420 421 5.431765 CTGTTTGCATCCATAGGTTAGAGT 58.568 41.667 0.00 0.00 0.00 3.24
421 422 4.818546 CCTGTTTGCATCCATAGGTTAGAG 59.181 45.833 0.00 0.00 0.00 2.43
422 423 4.385199 CCCTGTTTGCATCCATAGGTTAGA 60.385 45.833 0.00 0.00 0.00 2.10
423 424 3.885297 CCCTGTTTGCATCCATAGGTTAG 59.115 47.826 0.00 0.00 0.00 2.34
424 425 3.268334 ACCCTGTTTGCATCCATAGGTTA 59.732 43.478 0.00 0.00 0.00 2.85
425 426 2.042979 ACCCTGTTTGCATCCATAGGTT 59.957 45.455 0.00 0.00 0.00 3.50
426 427 1.640670 ACCCTGTTTGCATCCATAGGT 59.359 47.619 0.00 0.00 0.00 3.08
427 428 2.442236 ACCCTGTTTGCATCCATAGG 57.558 50.000 0.00 0.00 0.00 2.57
428 429 5.221303 CCATTTACCCTGTTTGCATCCATAG 60.221 44.000 0.00 0.00 0.00 2.23
429 430 4.648762 CCATTTACCCTGTTTGCATCCATA 59.351 41.667 0.00 0.00 0.00 2.74
430 431 3.451902 CCATTTACCCTGTTTGCATCCAT 59.548 43.478 0.00 0.00 0.00 3.41
431 432 2.830923 CCATTTACCCTGTTTGCATCCA 59.169 45.455 0.00 0.00 0.00 3.41
432 433 2.831526 ACCATTTACCCTGTTTGCATCC 59.168 45.455 0.00 0.00 0.00 3.51
433 434 4.461081 TGTACCATTTACCCTGTTTGCATC 59.539 41.667 0.00 0.00 0.00 3.91
434 435 4.411927 TGTACCATTTACCCTGTTTGCAT 58.588 39.130 0.00 0.00 0.00 3.96
435 436 3.833732 TGTACCATTTACCCTGTTTGCA 58.166 40.909 0.00 0.00 0.00 4.08
436 437 4.381505 CCATGTACCATTTACCCTGTTTGC 60.382 45.833 0.00 0.00 0.00 3.68
437 438 4.381505 GCCATGTACCATTTACCCTGTTTG 60.382 45.833 0.00 0.00 0.00 2.93
438 439 3.767131 GCCATGTACCATTTACCCTGTTT 59.233 43.478 0.00 0.00 0.00 2.83
439 440 3.361786 GCCATGTACCATTTACCCTGTT 58.638 45.455 0.00 0.00 0.00 3.16
440 441 2.682563 CGCCATGTACCATTTACCCTGT 60.683 50.000 0.00 0.00 0.00 4.00
441 442 1.946768 CGCCATGTACCATTTACCCTG 59.053 52.381 0.00 0.00 0.00 4.45
442 443 1.841277 TCGCCATGTACCATTTACCCT 59.159 47.619 0.00 0.00 0.00 4.34
443 444 1.944709 GTCGCCATGTACCATTTACCC 59.055 52.381 0.00 0.00 0.00 3.69
444 445 1.944709 GGTCGCCATGTACCATTTACC 59.055 52.381 4.66 0.00 35.73 2.85
445 446 1.595794 CGGTCGCCATGTACCATTTAC 59.404 52.381 9.14 0.00 35.35 2.01
446 447 1.473610 CCGGTCGCCATGTACCATTTA 60.474 52.381 0.00 0.00 35.35 1.40
447 448 0.746563 CCGGTCGCCATGTACCATTT 60.747 55.000 0.00 0.00 35.35 2.32
450 451 4.460683 GCCGGTCGCCATGTACCA 62.461 66.667 1.90 0.00 35.35 3.25
453 454 2.809706 GTAGCCGGTCGCCATGTA 59.190 61.111 1.90 0.00 38.78 2.29
459 460 2.679132 ATCATGACGTAGCCGGTCGC 62.679 60.000 1.90 3.72 38.78 5.19
464 465 0.389391 AAGGGATCATGACGTAGCCG 59.611 55.000 0.00 0.00 40.83 5.52
483 484 3.181475 GGATTTGATCAGTGCTCTACCGA 60.181 47.826 0.00 0.00 0.00 4.69
517 518 3.340814 AACAGAACCGCTTGATCTGAT 57.659 42.857 14.47 0.00 42.48 2.90
531 532 5.398169 CGCCATAAATGCAACTTAACAGAA 58.602 37.500 0.00 0.00 0.00 3.02
538 539 3.426963 CGTTACCGCCATAAATGCAACTT 60.427 43.478 0.00 0.00 0.00 2.66
556 557 2.996153 TGGCTGCCCGTACCGTTA 60.996 61.111 17.53 0.00 0.00 3.18
562 563 3.849951 GCTAGCTGGCTGCCCGTA 61.850 66.667 17.53 3.93 44.23 4.02
565 566 3.459148 GAGAGCTAGCTGGCTGCCC 62.459 68.421 30.85 15.21 43.20 5.36
582 583 5.247564 AGTGGGCAGTTTTGTACTAGTATGA 59.752 40.000 5.75 0.00 34.56 2.15
590 595 4.219143 GTACAAGTGGGCAGTTTTGTAC 57.781 45.455 13.85 13.85 44.65 2.90
591 596 3.215975 GGTACAAGTGGGCAGTTTTGTA 58.784 45.455 0.00 0.00 35.55 2.41
593 598 2.028130 TGGTACAAGTGGGCAGTTTTG 58.972 47.619 0.00 0.00 31.92 2.44
596 601 0.537371 GCTGGTACAAGTGGGCAGTT 60.537 55.000 0.00 0.00 38.70 3.16
650 655 3.812053 GCTCGATCTTATTTGTGGCTGAT 59.188 43.478 0.00 0.00 0.00 2.90
739 744 2.951458 CGGGCCGTGGAGAAAAAC 59.049 61.111 19.97 0.00 0.00 2.43
763 768 2.828549 GGGGCCGTGCGATTGATT 60.829 61.111 0.00 0.00 0.00 2.57
813 818 2.204034 TGGAGACCAGTGGCTCCA 59.796 61.111 33.73 33.73 46.03 3.86
870 875 4.704833 TTGGAGTCGGCAGGCAGC 62.705 66.667 0.00 0.00 44.65 5.25
977 985 3.706373 TTGCAGAGGGGAGACGGC 61.706 66.667 0.00 0.00 0.00 5.68
1035 1046 2.831742 CCCACCGGAGCTAGCGTA 60.832 66.667 9.46 0.00 0.00 4.42
1049 1060 0.324275 GGCTATGAAAACCAGGCCCA 60.324 55.000 0.00 0.00 39.85 5.36
1054 1065 1.599542 GCTAGCGGCTATGAAAACCAG 59.400 52.381 10.62 0.00 38.06 4.00
1058 1069 2.404215 GATCGCTAGCGGCTATGAAAA 58.596 47.619 34.76 14.33 40.25 2.29
1071 1082 2.217038 GGCAGGGGATGGATCGCTA 61.217 63.158 3.95 0.00 39.44 4.26
1104 1119 1.456705 GATCCTCCGACCAGCCTCT 60.457 63.158 0.00 0.00 0.00 3.69
1112 1127 1.956297 TCTCTTCTCGATCCTCCGAC 58.044 55.000 0.00 0.00 34.56 4.79
1117 1132 1.408702 GCAGCTTCTCTTCTCGATCCT 59.591 52.381 0.00 0.00 0.00 3.24
1133 1148 1.060937 CGCCATTACGAACAGCAGC 59.939 57.895 0.00 0.00 34.06 5.25
1134 1149 1.705337 CCCGCCATTACGAACAGCAG 61.705 60.000 0.00 0.00 34.06 4.24
1136 1151 3.098555 CCCGCCATTACGAACAGC 58.901 61.111 0.00 0.00 34.06 4.40
1137 1152 2.808958 CGCCCGCCATTACGAACAG 61.809 63.158 0.00 0.00 34.06 3.16
1232 1248 2.032528 CAGGGCACGCAGAGGAAA 59.967 61.111 0.00 0.00 0.00 3.13
1351 1367 2.031616 TGGACGACGACTCCGACT 59.968 61.111 0.00 0.00 39.50 4.18
1352 1368 2.479650 CTGGACGACGACTCCGAC 59.520 66.667 0.00 0.00 39.50 4.79
1841 1863 0.762418 TCCTTCTTCCTTGTTCGGCA 59.238 50.000 0.00 0.00 0.00 5.69
1864 1887 5.599999 ACGTGTAATTCTATCTCAGGCTT 57.400 39.130 0.00 0.00 0.00 4.35
1996 2046 1.747355 AGAAGATCTTTTGCCGCCATG 59.253 47.619 9.87 0.00 0.00 3.66
1997 2047 2.019984 GAGAAGATCTTTTGCCGCCAT 58.980 47.619 9.87 0.00 0.00 4.40
1998 2048 1.271325 TGAGAAGATCTTTTGCCGCCA 60.271 47.619 9.87 0.00 0.00 5.69
2001 2051 8.693542 AAATAAAATGAGAAGATCTTTTGCCG 57.306 30.769 9.87 0.00 35.92 5.69
2029 2079 1.182385 GCCACCATCCGGAAAACCAA 61.182 55.000 9.01 0.00 35.59 3.67
2031 2081 1.182385 TTGCCACCATCCGGAAAACC 61.182 55.000 9.01 0.00 35.59 3.27
2032 2082 0.676736 TTTGCCACCATCCGGAAAAC 59.323 50.000 9.01 0.00 35.59 2.43
2036 2086 0.331278 ATCTTTTGCCACCATCCGGA 59.669 50.000 6.61 6.61 35.59 5.14
2037 2087 0.740737 GATCTTTTGCCACCATCCGG 59.259 55.000 0.00 0.00 38.77 5.14
2038 2088 1.755179 AGATCTTTTGCCACCATCCG 58.245 50.000 0.00 0.00 0.00 4.18
2039 2089 2.827921 ACAAGATCTTTTGCCACCATCC 59.172 45.455 4.86 0.00 0.00 3.51
2040 2090 3.367703 CCACAAGATCTTTTGCCACCATC 60.368 47.826 14.91 0.00 0.00 3.51
2041 2091 2.564062 CCACAAGATCTTTTGCCACCAT 59.436 45.455 14.91 0.00 0.00 3.55
2042 2092 1.962807 CCACAAGATCTTTTGCCACCA 59.037 47.619 14.91 0.00 0.00 4.17
2045 2095 3.826157 CCTAACCACAAGATCTTTTGCCA 59.174 43.478 14.91 2.88 0.00 4.92
2048 2098 4.702131 CCCTCCTAACCACAAGATCTTTTG 59.298 45.833 13.64 13.64 0.00 2.44
2099 2156 2.224066 ACAGACAGTCAAAAGACTCCCG 60.224 50.000 2.66 0.00 32.26 5.14
2106 2163 1.933181 TCACGCACAGACAGTCAAAAG 59.067 47.619 2.66 0.00 0.00 2.27
2166 2223 3.865745 GTCGACATTCTTCCACCACATAG 59.134 47.826 11.55 0.00 0.00 2.23
2175 2233 3.712091 AGGTATCGTCGACATTCTTCC 57.288 47.619 17.16 9.51 0.00 3.46
2262 2320 0.999406 CGGCGATGTGTGGTTAGAAG 59.001 55.000 0.00 0.00 0.00 2.85
2293 2351 4.465886 TCGATCCCTTTCCTGAACAAAAA 58.534 39.130 0.00 0.00 0.00 1.94
2295 2353 3.674997 CTCGATCCCTTTCCTGAACAAA 58.325 45.455 0.00 0.00 0.00 2.83
2296 2354 2.615493 GCTCGATCCCTTTCCTGAACAA 60.615 50.000 0.00 0.00 0.00 2.83
2297 2355 1.066143 GCTCGATCCCTTTCCTGAACA 60.066 52.381 0.00 0.00 0.00 3.18
2299 2357 1.482593 GAGCTCGATCCCTTTCCTGAA 59.517 52.381 0.00 0.00 0.00 3.02
2300 2358 1.115467 GAGCTCGATCCCTTTCCTGA 58.885 55.000 0.00 0.00 0.00 3.86
2301 2359 0.105778 GGAGCTCGATCCCTTTCCTG 59.894 60.000 7.83 0.00 32.79 3.86
2302 2360 0.031616 AGGAGCTCGATCCCTTTCCT 60.032 55.000 7.83 0.00 40.53 3.36
2303 2361 0.105778 CAGGAGCTCGATCCCTTTCC 59.894 60.000 7.83 0.00 40.53 3.13
2304 2362 0.105778 CCAGGAGCTCGATCCCTTTC 59.894 60.000 7.83 0.00 40.53 2.62
2305 2363 0.618968 ACCAGGAGCTCGATCCCTTT 60.619 55.000 7.83 0.00 40.53 3.11
2306 2364 0.618968 AACCAGGAGCTCGATCCCTT 60.619 55.000 7.83 0.00 40.53 3.95
2320 2378 2.266055 GAGGTCAGCCGGAACCAG 59.734 66.667 19.51 0.00 40.50 4.00
2372 2440 1.717194 TACTCAAAACCGATGGCGAC 58.283 50.000 0.00 0.00 40.82 5.19
2416 2486 1.075836 AGGTCCACACTCGCTCTCT 59.924 57.895 0.00 0.00 0.00 3.10
2426 2496 2.109480 AGTACAGAGTACCAGGTCCACA 59.891 50.000 0.00 0.00 0.00 4.17
2481 2558 1.688735 CCCTCGCAGACATATTCCTCA 59.311 52.381 0.00 0.00 0.00 3.86
2489 2566 2.037620 GAGATGGCCCTCGCAGACAT 62.038 60.000 6.89 0.00 36.38 3.06
2490 2567 2.685017 AGATGGCCCTCGCAGACA 60.685 61.111 0.00 0.00 36.38 3.41
2491 2568 2.107953 GAGATGGCCCTCGCAGAC 59.892 66.667 6.89 0.00 36.38 3.51
2497 2574 0.179070 GTTTCCTCGAGATGGCCCTC 60.179 60.000 15.71 0.00 0.00 4.30
2498 2575 0.909610 TGTTTCCTCGAGATGGCCCT 60.910 55.000 15.71 0.00 0.00 5.19
2509 2589 6.331369 TCAATTCACTTTCCATGTTTCCTC 57.669 37.500 0.00 0.00 0.00 3.71
2524 2604 7.227049 TCCCCTTCAGTAAATTTCAATTCAC 57.773 36.000 0.00 0.00 0.00 3.18
2532 2612 7.069455 CCCGATTAATTCCCCTTCAGTAAATTT 59.931 37.037 0.00 0.00 0.00 1.82
2541 2621 1.617322 GCCCCGATTAATTCCCCTTC 58.383 55.000 0.00 0.00 0.00 3.46
2542 2622 0.187606 GGCCCCGATTAATTCCCCTT 59.812 55.000 0.00 0.00 0.00 3.95
2543 2623 0.996762 TGGCCCCGATTAATTCCCCT 60.997 55.000 0.00 0.00 0.00 4.79
2544 2624 0.105913 TTGGCCCCGATTAATTCCCC 60.106 55.000 0.00 0.00 0.00 4.81
2545 2625 1.037493 GTTGGCCCCGATTAATTCCC 58.963 55.000 0.00 0.00 0.00 3.97
2546 2626 0.666374 CGTTGGCCCCGATTAATTCC 59.334 55.000 0.00 0.00 0.00 3.01
2547 2627 1.670791 TCGTTGGCCCCGATTAATTC 58.329 50.000 10.28 0.00 0.00 2.17
2548 2628 2.158667 AGATCGTTGGCCCCGATTAATT 60.159 45.455 23.39 6.74 44.48 1.40
2549 2629 1.420138 AGATCGTTGGCCCCGATTAAT 59.580 47.619 23.39 13.00 44.48 1.40
2550 2630 0.834612 AGATCGTTGGCCCCGATTAA 59.165 50.000 23.39 0.00 44.48 1.40
2551 2631 0.105964 CAGATCGTTGGCCCCGATTA 59.894 55.000 23.39 2.20 44.48 1.75
2552 2632 1.153168 CAGATCGTTGGCCCCGATT 60.153 57.895 23.39 13.37 44.48 3.34
2553 2633 2.505982 CAGATCGTTGGCCCCGAT 59.494 61.111 22.93 22.93 46.91 4.18
2554 2634 4.467084 GCAGATCGTTGGCCCCGA 62.467 66.667 15.88 15.88 38.89 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.