Multiple sequence alignment - TraesCS6B01G180500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G180500 chr6B 100.000 4709 0 0 627 5335 201407389 201412097 0.000000e+00 8696.0
1 TraesCS6B01G180500 chr6B 100.000 298 0 0 1 298 201406763 201407060 7.810000e-153 551.0
2 TraesCS6B01G180500 chr6B 93.793 290 18 0 1 290 1693068 1692779 2.280000e-118 436.0
3 TraesCS6B01G180500 chr6D 96.060 4645 121 29 737 5335 112428934 112433562 0.000000e+00 7507.0
4 TraesCS6B01G180500 chr6D 84.314 102 15 1 630 730 74290957 74290856 1.220000e-16 99.0
5 TraesCS6B01G180500 chr6D 84.043 94 14 1 638 730 73848223 73848130 7.360000e-14 89.8
6 TraesCS6B01G180500 chr6A 96.593 3199 54 25 2143 5335 137376636 137379785 0.000000e+00 5252.0
7 TraesCS6B01G180500 chr6A 92.450 1510 68 21 627 2100 137374852 137376351 0.000000e+00 2115.0
8 TraesCS6B01G180500 chr6A 92.105 76 4 2 5262 5335 532026929 532026854 7.310000e-19 106.0
9 TraesCS6B01G180500 chrUn 100.000 412 0 0 4038 4449 477559386 477558975 0.000000e+00 761.0
10 TraesCS6B01G180500 chr7B 98.504 401 5 1 2056 2456 620967780 620968179 0.000000e+00 706.0
11 TraesCS6B01G180500 chr7B 93.310 284 19 0 1 284 562982610 562982893 2.300000e-113 420.0
12 TraesCS6B01G180500 chr5B 95.341 279 13 0 6 284 278407376 278407654 1.360000e-120 444.0
13 TraesCS6B01G180500 chr5B 93.640 283 17 1 9 291 84623030 84622749 6.390000e-114 422.0
14 TraesCS6B01G180500 chr5B 94.805 77 2 2 5261 5335 98663331 98663255 9.390000e-23 119.0
15 TraesCS6B01G180500 chr2B 94.056 286 16 1 1 285 150251922 150251637 2.950000e-117 433.0
16 TraesCS6B01G180500 chr2B 93.617 282 18 0 6 287 150239357 150239076 6.390000e-114 422.0
17 TraesCS6B01G180500 chr2B 93.031 287 19 1 1 287 85014445 85014730 8.260000e-113 418.0
18 TraesCS6B01G180500 chr2B 93.262 282 19 0 6 287 494368038 494368319 2.970000e-112 416.0
19 TraesCS6B01G180500 chr2B 89.873 79 6 2 5259 5335 310496407 310496329 3.400000e-17 100.0
20 TraesCS6B01G180500 chr1B 92.683 287 21 0 1 287 104907879 104908165 1.070000e-111 414.0
21 TraesCS6B01G180500 chr2D 91.463 82 5 2 5256 5335 22432753 22432834 1.570000e-20 111.0
22 TraesCS6B01G180500 chr7A 90.789 76 5 2 5262 5335 705226477 705226552 3.400000e-17 100.0
23 TraesCS6B01G180500 chr5D 87.952 83 8 2 5255 5335 269736454 269736536 4.400000e-16 97.1
24 TraesCS6B01G180500 chr4A 87.500 80 5 4 5261 5335 48149197 48149276 2.650000e-13 87.9
25 TraesCS6B01G180500 chr1D 88.679 53 5 1 4027 4079 140049694 140049745 4.460000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G180500 chr6B 201406763 201412097 5334 False 4623.5 8696 100.0000 1 5335 2 chr6B.!!$F1 5334
1 TraesCS6B01G180500 chr6D 112428934 112433562 4628 False 7507.0 7507 96.0600 737 5335 1 chr6D.!!$F1 4598
2 TraesCS6B01G180500 chr6A 137374852 137379785 4933 False 3683.5 5252 94.5215 627 5335 2 chr6A.!!$F1 4708

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
61 62 0.036952 CGTTGCCATCCTGAGTGACT 60.037 55.0 0.00 0.00 0.00 3.41 F
293 294 0.319555 TCTATGGCATCGTTAGCGCC 60.320 55.0 1.65 0.00 46.43 6.53 F
1595 1624 0.322975 GTGTGGGCTCTGTGATGTCT 59.677 55.0 0.00 0.00 0.00 3.41 F
1958 1989 0.792640 CTCGATGTGACACTGTTGGC 59.207 55.0 7.20 0.00 0.00 4.52 F
2689 2972 0.107312 AGCGCCTTCTGCATTCATCT 60.107 50.0 2.29 0.00 41.33 2.90 F
3678 3961 1.140134 ATGGGGCCACTGTGGTAAGT 61.140 55.0 26.48 8.15 40.46 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1765 1796 0.313672 TTTGTTCACTGGCGCCAATC 59.686 50.000 32.09 15.31 0.00 2.67 R
2087 2127 2.103432 ACGTGTGTTCCTATGTCCAACA 59.897 45.455 0.00 0.00 0.00 3.33 R
2413 2696 3.668596 AATCAAGCAACGCGGTATTAC 57.331 42.857 12.47 0.00 0.00 1.89 R
3950 4233 1.218316 CTAACTCTGGTGGGCGGAC 59.782 63.158 0.00 0.00 0.00 4.79 R
3982 4265 0.107897 ACGGCGCAGAATACATTCCA 60.108 50.000 16.26 0.00 37.51 3.53 R
4638 4921 1.138247 GGAGCGCTGGCAAAATGAG 59.862 57.895 18.48 0.00 43.41 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 8.689251 TGATCTTTAAGAATACAGAGTGAACG 57.311 34.615 0.00 0.00 0.00 3.95
36 37 6.946229 TCTTTAAGAATACAGAGTGAACGC 57.054 37.500 0.00 0.00 0.00 4.84
37 38 5.867716 TCTTTAAGAATACAGAGTGAACGCC 59.132 40.000 0.00 0.00 0.00 5.68
38 39 3.963428 AAGAATACAGAGTGAACGCCT 57.037 42.857 0.00 0.00 0.00 5.52
39 40 3.238108 AGAATACAGAGTGAACGCCTG 57.762 47.619 0.00 0.00 0.00 4.85
40 41 2.093973 AGAATACAGAGTGAACGCCTGG 60.094 50.000 9.54 0.00 32.52 4.45
41 42 0.108138 ATACAGAGTGAACGCCTGGC 60.108 55.000 9.11 9.11 32.52 4.85
42 43 2.167398 TACAGAGTGAACGCCTGGCC 62.167 60.000 14.12 0.00 32.52 5.36
43 44 4.379243 AGAGTGAACGCCTGGCCG 62.379 66.667 14.12 10.92 0.00 6.13
44 45 4.681978 GAGTGAACGCCTGGCCGT 62.682 66.667 14.12 11.60 44.41 5.68
57 58 2.045926 GCCGTTGCCATCCTGAGT 60.046 61.111 0.00 0.00 0.00 3.41
58 59 2.401766 GCCGTTGCCATCCTGAGTG 61.402 63.158 0.00 0.00 0.00 3.51
59 60 1.296392 CCGTTGCCATCCTGAGTGA 59.704 57.895 0.00 0.00 0.00 3.41
60 61 1.021390 CCGTTGCCATCCTGAGTGAC 61.021 60.000 0.00 0.00 0.00 3.67
61 62 0.036952 CGTTGCCATCCTGAGTGACT 60.037 55.000 0.00 0.00 0.00 3.41
62 63 1.731720 GTTGCCATCCTGAGTGACTC 58.268 55.000 5.47 5.47 0.00 3.36
63 64 1.277557 GTTGCCATCCTGAGTGACTCT 59.722 52.381 14.42 0.00 0.00 3.24
64 65 2.497675 GTTGCCATCCTGAGTGACTCTA 59.502 50.000 14.42 0.00 0.00 2.43
65 66 2.382882 TGCCATCCTGAGTGACTCTAG 58.617 52.381 14.42 9.24 0.00 2.43
66 67 1.686052 GCCATCCTGAGTGACTCTAGG 59.314 57.143 18.87 18.87 33.36 3.02
67 68 2.952702 GCCATCCTGAGTGACTCTAGGT 60.953 54.545 21.93 12.23 33.61 3.08
68 69 2.955660 CCATCCTGAGTGACTCTAGGTC 59.044 54.545 21.93 4.84 44.70 3.85
69 70 3.372566 CCATCCTGAGTGACTCTAGGTCT 60.373 52.174 21.93 13.02 44.74 3.85
70 71 4.277476 CATCCTGAGTGACTCTAGGTCTT 58.723 47.826 21.93 11.46 44.74 3.01
71 72 3.958018 TCCTGAGTGACTCTAGGTCTTC 58.042 50.000 21.93 9.55 44.74 2.87
72 73 3.589735 TCCTGAGTGACTCTAGGTCTTCT 59.410 47.826 21.93 9.56 44.74 2.85
73 74 3.694072 CCTGAGTGACTCTAGGTCTTCTG 59.306 52.174 14.42 11.34 44.74 3.02
74 75 4.331968 CTGAGTGACTCTAGGTCTTCTGT 58.668 47.826 14.42 0.00 44.74 3.41
75 76 5.492895 CTGAGTGACTCTAGGTCTTCTGTA 58.507 45.833 14.42 0.00 44.74 2.74
76 77 5.247084 TGAGTGACTCTAGGTCTTCTGTAC 58.753 45.833 14.42 0.00 44.74 2.90
77 78 5.013287 TGAGTGACTCTAGGTCTTCTGTACT 59.987 44.000 14.42 6.32 44.74 2.73
78 79 5.493809 AGTGACTCTAGGTCTTCTGTACTC 58.506 45.833 11.21 0.00 44.74 2.59
79 80 4.637091 GTGACTCTAGGTCTTCTGTACTCC 59.363 50.000 11.21 0.00 44.74 3.85
80 81 3.872771 GACTCTAGGTCTTCTGTACTCCG 59.127 52.174 0.00 0.00 41.46 4.63
81 82 3.518705 ACTCTAGGTCTTCTGTACTCCGA 59.481 47.826 0.00 0.00 0.00 4.55
82 83 4.124238 CTCTAGGTCTTCTGTACTCCGAG 58.876 52.174 0.00 0.00 0.00 4.63
83 84 2.883122 AGGTCTTCTGTACTCCGAGT 57.117 50.000 6.25 6.25 0.00 4.18
84 85 2.438411 AGGTCTTCTGTACTCCGAGTG 58.562 52.381 11.52 0.00 0.00 3.51
85 86 1.473278 GGTCTTCTGTACTCCGAGTGG 59.527 57.143 11.52 2.01 0.00 4.00
86 87 2.161030 GTCTTCTGTACTCCGAGTGGT 58.839 52.381 11.52 0.00 36.30 4.16
87 88 2.557490 GTCTTCTGTACTCCGAGTGGTT 59.443 50.000 11.52 0.00 36.30 3.67
88 89 3.005578 GTCTTCTGTACTCCGAGTGGTTT 59.994 47.826 11.52 0.00 36.30 3.27
89 90 3.255149 TCTTCTGTACTCCGAGTGGTTTC 59.745 47.826 11.52 0.00 36.30 2.78
90 91 1.891150 TCTGTACTCCGAGTGGTTTCC 59.109 52.381 11.52 0.00 36.30 3.13
91 92 1.893801 CTGTACTCCGAGTGGTTTCCT 59.106 52.381 11.52 0.00 36.30 3.36
92 93 1.616865 TGTACTCCGAGTGGTTTCCTG 59.383 52.381 11.52 0.00 36.30 3.86
93 94 1.617357 GTACTCCGAGTGGTTTCCTGT 59.383 52.381 11.52 0.00 36.30 4.00
94 95 2.005370 ACTCCGAGTGGTTTCCTGTA 57.995 50.000 0.00 0.00 36.30 2.74
95 96 2.537143 ACTCCGAGTGGTTTCCTGTAT 58.463 47.619 0.00 0.00 36.30 2.29
96 97 2.233922 ACTCCGAGTGGTTTCCTGTATG 59.766 50.000 0.00 0.00 36.30 2.39
97 98 1.553248 TCCGAGTGGTTTCCTGTATGG 59.447 52.381 0.00 0.00 36.30 2.74
98 99 1.278127 CCGAGTGGTTTCCTGTATGGT 59.722 52.381 0.00 0.00 37.07 3.55
99 100 2.618053 CGAGTGGTTTCCTGTATGGTC 58.382 52.381 0.00 0.00 37.07 4.02
100 101 2.618053 GAGTGGTTTCCTGTATGGTCG 58.382 52.381 0.00 0.00 37.07 4.79
101 102 2.232941 GAGTGGTTTCCTGTATGGTCGA 59.767 50.000 0.00 0.00 37.07 4.20
102 103 2.635915 AGTGGTTTCCTGTATGGTCGAA 59.364 45.455 0.00 0.00 37.07 3.71
103 104 3.263425 AGTGGTTTCCTGTATGGTCGAAT 59.737 43.478 0.00 0.00 37.07 3.34
104 105 3.374058 GTGGTTTCCTGTATGGTCGAATG 59.626 47.826 0.00 0.00 37.07 2.67
105 106 3.262151 TGGTTTCCTGTATGGTCGAATGA 59.738 43.478 0.00 0.00 37.07 2.57
106 107 3.621715 GGTTTCCTGTATGGTCGAATGAC 59.378 47.826 0.00 0.00 44.72 3.06
107 108 4.504858 GTTTCCTGTATGGTCGAATGACT 58.495 43.478 0.00 0.00 44.83 3.41
108 109 4.819105 TTCCTGTATGGTCGAATGACTT 57.181 40.909 0.00 0.00 44.83 3.01
109 110 4.386867 TCCTGTATGGTCGAATGACTTC 57.613 45.455 0.00 0.00 44.83 3.01
110 111 3.767131 TCCTGTATGGTCGAATGACTTCA 59.233 43.478 0.00 0.00 44.83 3.02
111 112 4.405680 TCCTGTATGGTCGAATGACTTCAT 59.594 41.667 0.00 0.00 44.83 2.57
112 113 4.747108 CCTGTATGGTCGAATGACTTCATC 59.253 45.833 0.00 0.00 44.83 2.92
113 114 4.693283 TGTATGGTCGAATGACTTCATCC 58.307 43.478 0.00 0.00 44.83 3.51
114 115 3.912496 ATGGTCGAATGACTTCATCCA 57.088 42.857 0.00 1.08 44.83 3.41
115 116 3.251479 TGGTCGAATGACTTCATCCAG 57.749 47.619 0.00 0.00 44.83 3.86
116 117 2.093500 TGGTCGAATGACTTCATCCAGG 60.093 50.000 0.00 0.00 44.83 4.45
117 118 2.093447 GGTCGAATGACTTCATCCAGGT 60.093 50.000 0.00 0.00 44.83 4.00
118 119 3.190874 GTCGAATGACTTCATCCAGGTC 58.809 50.000 0.00 0.00 42.08 3.85
119 120 2.159240 TCGAATGACTTCATCCAGGTCG 60.159 50.000 4.56 4.56 35.10 4.79
120 121 2.159240 CGAATGACTTCATCCAGGTCGA 60.159 50.000 4.86 0.00 35.04 4.20
121 122 3.452474 GAATGACTTCATCCAGGTCGAG 58.548 50.000 0.00 0.00 35.10 4.04
122 123 1.924731 TGACTTCATCCAGGTCGAGT 58.075 50.000 0.00 0.00 33.21 4.18
123 124 1.546029 TGACTTCATCCAGGTCGAGTG 59.454 52.381 0.00 0.00 33.21 3.51
124 125 1.819288 GACTTCATCCAGGTCGAGTGA 59.181 52.381 0.00 0.00 0.00 3.41
125 126 2.231478 GACTTCATCCAGGTCGAGTGAA 59.769 50.000 0.00 0.00 0.00 3.18
126 127 2.632996 ACTTCATCCAGGTCGAGTGAAA 59.367 45.455 0.00 0.00 0.00 2.69
127 128 3.261897 ACTTCATCCAGGTCGAGTGAAAT 59.738 43.478 0.00 0.00 0.00 2.17
128 129 3.981071 TCATCCAGGTCGAGTGAAATT 57.019 42.857 0.00 0.00 0.00 1.82
129 130 3.599343 TCATCCAGGTCGAGTGAAATTG 58.401 45.455 0.00 0.00 0.00 2.32
130 131 2.472695 TCCAGGTCGAGTGAAATTGG 57.527 50.000 0.00 0.00 0.00 3.16
131 132 1.003118 TCCAGGTCGAGTGAAATTGGG 59.997 52.381 0.00 0.00 0.00 4.12
132 133 1.453155 CAGGTCGAGTGAAATTGGGG 58.547 55.000 0.00 0.00 0.00 4.96
133 134 1.003118 CAGGTCGAGTGAAATTGGGGA 59.997 52.381 0.00 0.00 0.00 4.81
134 135 1.916181 AGGTCGAGTGAAATTGGGGAT 59.084 47.619 0.00 0.00 0.00 3.85
135 136 3.112263 AGGTCGAGTGAAATTGGGGATA 58.888 45.455 0.00 0.00 0.00 2.59
136 137 3.716872 AGGTCGAGTGAAATTGGGGATAT 59.283 43.478 0.00 0.00 0.00 1.63
137 138 4.065789 GGTCGAGTGAAATTGGGGATATC 58.934 47.826 0.00 0.00 0.00 1.63
138 139 4.065789 GTCGAGTGAAATTGGGGATATCC 58.934 47.826 13.87 13.87 0.00 2.59
139 140 3.067106 CGAGTGAAATTGGGGATATCCG 58.933 50.000 15.69 0.00 36.71 4.18
140 141 3.244078 CGAGTGAAATTGGGGATATCCGA 60.244 47.826 15.69 4.72 36.71 4.55
141 142 4.319177 GAGTGAAATTGGGGATATCCGAG 58.681 47.826 15.69 0.00 36.71 4.63
142 143 3.716872 AGTGAAATTGGGGATATCCGAGT 59.283 43.478 15.69 0.85 36.71 4.18
143 144 3.815401 GTGAAATTGGGGATATCCGAGTG 59.185 47.826 15.69 0.00 36.71 3.51
144 145 3.714280 TGAAATTGGGGATATCCGAGTGA 59.286 43.478 15.69 0.45 36.71 3.41
145 146 4.202357 TGAAATTGGGGATATCCGAGTGAG 60.202 45.833 15.69 0.00 36.71 3.51
146 147 1.717032 TTGGGGATATCCGAGTGAGG 58.283 55.000 15.69 0.00 36.71 3.86
147 148 0.561184 TGGGGATATCCGAGTGAGGT 59.439 55.000 15.69 0.00 36.71 3.85
148 149 0.969894 GGGGATATCCGAGTGAGGTG 59.030 60.000 15.69 0.00 36.71 4.00
149 150 1.480683 GGGGATATCCGAGTGAGGTGA 60.481 57.143 15.69 0.00 36.71 4.02
150 151 1.614413 GGGATATCCGAGTGAGGTGAC 59.386 57.143 15.69 0.00 36.71 3.67
151 152 2.753507 GGGATATCCGAGTGAGGTGACT 60.754 54.545 15.69 0.00 39.83 3.41
152 153 3.498121 GGGATATCCGAGTGAGGTGACTA 60.498 52.174 15.69 0.00 37.69 2.59
153 154 3.754323 GGATATCCGAGTGAGGTGACTAG 59.246 52.174 5.86 0.00 44.43 2.57
154 155 2.810870 ATCCGAGTGAGGTGACTAGT 57.189 50.000 0.00 0.00 44.43 2.57
155 156 2.110901 TCCGAGTGAGGTGACTAGTC 57.889 55.000 16.32 16.32 44.43 2.59
156 157 0.727970 CCGAGTGAGGTGACTAGTCG 59.272 60.000 17.85 3.29 44.43 4.18
157 158 1.675116 CCGAGTGAGGTGACTAGTCGA 60.675 57.143 17.85 4.78 44.43 4.20
158 159 1.661617 CGAGTGAGGTGACTAGTCGAG 59.338 57.143 17.85 0.00 44.43 4.04
159 160 2.702261 GAGTGAGGTGACTAGTCGAGT 58.298 52.381 17.85 4.46 44.43 4.18
160 161 2.417239 GAGTGAGGTGACTAGTCGAGTG 59.583 54.545 17.85 0.00 44.43 3.51
161 162 1.469308 GTGAGGTGACTAGTCGAGTGG 59.531 57.143 17.85 1.79 44.43 4.00
162 163 1.350019 TGAGGTGACTAGTCGAGTGGA 59.650 52.381 17.85 0.00 44.43 4.02
163 164 2.026169 TGAGGTGACTAGTCGAGTGGAT 60.026 50.000 17.85 0.00 44.43 3.41
164 165 3.018149 GAGGTGACTAGTCGAGTGGATT 58.982 50.000 17.85 0.00 44.43 3.01
165 166 2.755655 AGGTGACTAGTCGAGTGGATTG 59.244 50.000 17.85 0.00 39.06 2.67
166 167 2.531206 GTGACTAGTCGAGTGGATTGC 58.469 52.381 17.85 0.00 39.06 3.56
167 168 2.094700 GTGACTAGTCGAGTGGATTGCA 60.095 50.000 17.85 0.57 39.06 4.08
168 169 2.094700 TGACTAGTCGAGTGGATTGCAC 60.095 50.000 17.85 0.00 39.06 4.57
169 170 2.164624 GACTAGTCGAGTGGATTGCACT 59.835 50.000 10.90 10.90 39.06 4.40
170 171 2.164624 ACTAGTCGAGTGGATTGCACTC 59.835 50.000 23.89 23.89 43.98 3.51
175 176 1.293924 GAGTGGATTGCACTCGATGG 58.706 55.000 20.47 0.00 39.49 3.51
176 177 0.615331 AGTGGATTGCACTCGATGGT 59.385 50.000 4.82 0.00 0.00 3.55
177 178 1.003580 AGTGGATTGCACTCGATGGTT 59.996 47.619 4.82 0.00 0.00 3.67
178 179 1.812571 GTGGATTGCACTCGATGGTTT 59.187 47.619 0.45 0.00 0.00 3.27
179 180 2.083774 TGGATTGCACTCGATGGTTTC 58.916 47.619 0.00 0.00 0.00 2.78
180 181 2.083774 GGATTGCACTCGATGGTTTCA 58.916 47.619 0.00 0.00 0.00 2.69
181 182 2.096496 GGATTGCACTCGATGGTTTCAG 59.904 50.000 0.00 0.00 0.00 3.02
182 183 2.254546 TTGCACTCGATGGTTTCAGT 57.745 45.000 0.00 0.00 0.00 3.41
183 184 1.795768 TGCACTCGATGGTTTCAGTC 58.204 50.000 0.00 0.00 0.00 3.51
184 185 0.716108 GCACTCGATGGTTTCAGTCG 59.284 55.000 0.00 0.00 36.75 4.18
185 186 1.668919 GCACTCGATGGTTTCAGTCGA 60.669 52.381 0.00 0.00 41.53 4.20
186 187 2.881074 CACTCGATGGTTTCAGTCGAT 58.119 47.619 0.00 0.00 42.65 3.59
187 188 3.733988 GCACTCGATGGTTTCAGTCGATA 60.734 47.826 0.00 0.00 42.65 2.92
188 189 3.791887 CACTCGATGGTTTCAGTCGATAC 59.208 47.826 0.00 0.00 42.65 2.24
189 190 3.695060 ACTCGATGGTTTCAGTCGATACT 59.305 43.478 0.00 0.00 42.65 2.12
190 191 4.158025 ACTCGATGGTTTCAGTCGATACTT 59.842 41.667 0.00 0.00 42.65 2.24
191 192 4.669318 TCGATGGTTTCAGTCGATACTTC 58.331 43.478 0.00 0.00 39.22 3.01
192 193 3.797256 CGATGGTTTCAGTCGATACTTCC 59.203 47.826 0.00 0.00 37.55 3.46
193 194 4.440250 CGATGGTTTCAGTCGATACTTCCT 60.440 45.833 0.00 0.00 37.55 3.36
194 195 4.188247 TGGTTTCAGTCGATACTTCCTG 57.812 45.455 0.00 0.00 31.97 3.86
195 196 3.576982 TGGTTTCAGTCGATACTTCCTGT 59.423 43.478 0.00 0.00 31.97 4.00
196 197 4.039973 TGGTTTCAGTCGATACTTCCTGTT 59.960 41.667 0.00 0.00 31.97 3.16
197 198 4.389077 GGTTTCAGTCGATACTTCCTGTTG 59.611 45.833 0.00 0.00 31.97 3.33
198 199 4.866508 TTCAGTCGATACTTCCTGTTGT 57.133 40.909 0.00 0.00 31.97 3.32
199 200 4.174411 TCAGTCGATACTTCCTGTTGTG 57.826 45.455 0.00 0.00 31.97 3.33
200 201 2.668457 CAGTCGATACTTCCTGTTGTGC 59.332 50.000 0.00 0.00 31.97 4.57
201 202 2.563179 AGTCGATACTTCCTGTTGTGCT 59.437 45.455 0.00 0.00 29.00 4.40
202 203 3.006967 AGTCGATACTTCCTGTTGTGCTT 59.993 43.478 0.00 0.00 29.00 3.91
203 204 3.746492 GTCGATACTTCCTGTTGTGCTTT 59.254 43.478 0.00 0.00 0.00 3.51
204 205 3.745975 TCGATACTTCCTGTTGTGCTTTG 59.254 43.478 0.00 0.00 0.00 2.77
205 206 3.745975 CGATACTTCCTGTTGTGCTTTGA 59.254 43.478 0.00 0.00 0.00 2.69
206 207 4.213270 CGATACTTCCTGTTGTGCTTTGAA 59.787 41.667 0.00 0.00 0.00 2.69
207 208 5.106555 CGATACTTCCTGTTGTGCTTTGAAT 60.107 40.000 0.00 0.00 0.00 2.57
208 209 4.311816 ACTTCCTGTTGTGCTTTGAATG 57.688 40.909 0.00 0.00 0.00 2.67
209 210 3.701040 ACTTCCTGTTGTGCTTTGAATGT 59.299 39.130 0.00 0.00 0.00 2.71
210 211 3.988379 TCCTGTTGTGCTTTGAATGTC 57.012 42.857 0.00 0.00 0.00 3.06
211 212 2.622942 TCCTGTTGTGCTTTGAATGTCC 59.377 45.455 0.00 0.00 0.00 4.02
212 213 2.624838 CCTGTTGTGCTTTGAATGTCCT 59.375 45.455 0.00 0.00 0.00 3.85
213 214 3.068590 CCTGTTGTGCTTTGAATGTCCTT 59.931 43.478 0.00 0.00 0.00 3.36
214 215 4.278170 CCTGTTGTGCTTTGAATGTCCTTA 59.722 41.667 0.00 0.00 0.00 2.69
215 216 5.181690 TGTTGTGCTTTGAATGTCCTTAC 57.818 39.130 0.00 0.00 0.00 2.34
216 217 4.887071 TGTTGTGCTTTGAATGTCCTTACT 59.113 37.500 0.00 0.00 0.00 2.24
217 218 5.359576 TGTTGTGCTTTGAATGTCCTTACTT 59.640 36.000 0.00 0.00 0.00 2.24
218 219 5.689383 TGTGCTTTGAATGTCCTTACTTC 57.311 39.130 0.00 0.00 0.00 3.01
219 220 5.376625 TGTGCTTTGAATGTCCTTACTTCT 58.623 37.500 0.00 0.00 0.00 2.85
220 221 6.530120 TGTGCTTTGAATGTCCTTACTTCTA 58.470 36.000 0.00 0.00 0.00 2.10
221 222 6.995686 TGTGCTTTGAATGTCCTTACTTCTAA 59.004 34.615 0.00 0.00 0.00 2.10
222 223 7.173218 TGTGCTTTGAATGTCCTTACTTCTAAG 59.827 37.037 0.00 0.00 35.92 2.18
223 224 7.387948 GTGCTTTGAATGTCCTTACTTCTAAGA 59.612 37.037 8.99 0.00 35.29 2.10
224 225 8.103305 TGCTTTGAATGTCCTTACTTCTAAGAT 58.897 33.333 8.99 0.00 35.29 2.40
225 226 9.601217 GCTTTGAATGTCCTTACTTCTAAGATA 57.399 33.333 8.99 0.00 35.29 1.98
229 230 9.475620 TGAATGTCCTTACTTCTAAGATAGTGA 57.524 33.333 0.00 0.00 32.29 3.41
230 231 9.738832 GAATGTCCTTACTTCTAAGATAGTGAC 57.261 37.037 0.00 4.50 32.29 3.67
231 232 7.642082 TGTCCTTACTTCTAAGATAGTGACC 57.358 40.000 0.00 0.00 32.29 4.02
232 233 7.411808 TGTCCTTACTTCTAAGATAGTGACCT 58.588 38.462 0.00 0.00 32.29 3.85
233 234 7.894364 TGTCCTTACTTCTAAGATAGTGACCTT 59.106 37.037 0.00 0.00 32.29 3.50
234 235 8.192110 GTCCTTACTTCTAAGATAGTGACCTTG 58.808 40.741 0.00 0.00 32.29 3.61
235 236 8.114102 TCCTTACTTCTAAGATAGTGACCTTGA 58.886 37.037 0.00 0.00 32.29 3.02
236 237 8.410141 CCTTACTTCTAAGATAGTGACCTTGAG 58.590 40.741 0.00 0.00 32.29 3.02
237 238 8.880991 TTACTTCTAAGATAGTGACCTTGAGT 57.119 34.615 0.00 0.00 0.00 3.41
238 239 9.970553 TTACTTCTAAGATAGTGACCTTGAGTA 57.029 33.333 0.00 0.00 0.00 2.59
239 240 8.514330 ACTTCTAAGATAGTGACCTTGAGTAG 57.486 38.462 0.00 0.00 0.00 2.57
251 252 4.705337 CCTTGAGTAGGGCGTATAGATC 57.295 50.000 0.00 0.00 40.67 2.75
252 253 4.079970 CCTTGAGTAGGGCGTATAGATCA 58.920 47.826 0.00 0.00 40.67 2.92
253 254 4.156922 CCTTGAGTAGGGCGTATAGATCAG 59.843 50.000 0.00 0.00 40.67 2.90
254 255 3.687125 TGAGTAGGGCGTATAGATCAGG 58.313 50.000 0.00 0.00 0.00 3.86
255 256 3.074094 TGAGTAGGGCGTATAGATCAGGT 59.926 47.826 0.00 0.00 0.00 4.00
256 257 3.688235 AGTAGGGCGTATAGATCAGGTC 58.312 50.000 0.00 0.00 0.00 3.85
257 258 2.982339 AGGGCGTATAGATCAGGTCT 57.018 50.000 0.00 0.00 41.11 3.85
258 259 4.535294 AGTAGGGCGTATAGATCAGGTCTA 59.465 45.833 0.00 0.00 43.35 2.59
260 261 4.274147 AGGGCGTATAGATCAGGTCTATG 58.726 47.826 12.92 0.00 46.99 2.23
261 262 4.018324 AGGGCGTATAGATCAGGTCTATGA 60.018 45.833 12.92 0.00 46.99 2.15
262 263 4.096682 GGGCGTATAGATCAGGTCTATGAC 59.903 50.000 12.92 6.79 46.99 3.06
263 264 4.944930 GGCGTATAGATCAGGTCTATGACT 59.055 45.833 12.92 0.00 46.99 3.41
264 265 5.065474 GGCGTATAGATCAGGTCTATGACTC 59.935 48.000 12.92 3.56 46.99 3.36
265 266 5.878116 GCGTATAGATCAGGTCTATGACTCT 59.122 44.000 12.92 0.00 46.99 3.24
266 267 7.042950 GCGTATAGATCAGGTCTATGACTCTA 58.957 42.308 12.92 0.00 46.99 2.43
267 268 7.010738 GCGTATAGATCAGGTCTATGACTCTAC 59.989 44.444 12.92 1.95 46.99 2.59
268 269 7.493320 CGTATAGATCAGGTCTATGACTCTACC 59.507 44.444 12.92 0.00 46.99 3.18
269 270 4.993028 AGATCAGGTCTATGACTCTACCC 58.007 47.826 0.00 0.00 34.69 3.69
270 271 4.667858 AGATCAGGTCTATGACTCTACCCT 59.332 45.833 0.00 0.00 34.69 4.34
271 272 5.852807 AGATCAGGTCTATGACTCTACCCTA 59.147 44.000 0.00 0.00 34.69 3.53
272 273 5.570205 TCAGGTCTATGACTCTACCCTAG 57.430 47.826 0.00 0.00 32.10 3.02
273 274 4.351407 TCAGGTCTATGACTCTACCCTAGG 59.649 50.000 0.06 0.06 32.10 3.02
274 275 4.105057 CAGGTCTATGACTCTACCCTAGGT 59.895 50.000 8.29 0.00 34.65 3.08
275 276 4.351704 AGGTCTATGACTCTACCCTAGGTC 59.648 50.000 8.29 0.00 33.24 3.85
276 277 4.351704 GGTCTATGACTCTACCCTAGGTCT 59.648 50.000 8.29 0.00 33.24 3.85
277 278 5.547276 GGTCTATGACTCTACCCTAGGTCTA 59.453 48.000 8.29 0.00 33.24 2.59
278 279 6.216046 GGTCTATGACTCTACCCTAGGTCTAT 59.784 46.154 8.29 0.00 33.24 1.98
279 280 7.107542 GTCTATGACTCTACCCTAGGTCTATG 58.892 46.154 8.29 0.00 37.09 2.23
280 281 4.726035 TGACTCTACCCTAGGTCTATGG 57.274 50.000 8.29 0.00 37.09 2.74
281 282 3.181431 TGACTCTACCCTAGGTCTATGGC 60.181 52.174 8.29 0.00 37.09 4.40
282 283 2.789992 ACTCTACCCTAGGTCTATGGCA 59.210 50.000 8.29 0.00 37.09 4.92
283 284 3.403051 ACTCTACCCTAGGTCTATGGCAT 59.597 47.826 8.29 4.88 37.09 4.40
284 285 4.020543 CTCTACCCTAGGTCTATGGCATC 58.979 52.174 1.65 0.00 37.09 3.91
285 286 1.633774 ACCCTAGGTCTATGGCATCG 58.366 55.000 1.65 0.00 0.00 3.84
286 287 1.133136 ACCCTAGGTCTATGGCATCGT 60.133 52.381 1.65 0.00 0.00 3.73
287 288 1.971357 CCCTAGGTCTATGGCATCGTT 59.029 52.381 1.65 0.00 0.00 3.85
288 289 3.162666 CCCTAGGTCTATGGCATCGTTA 58.837 50.000 1.65 0.00 0.00 3.18
289 290 3.193691 CCCTAGGTCTATGGCATCGTTAG 59.806 52.174 1.65 0.00 0.00 2.34
290 291 2.821991 AGGTCTATGGCATCGTTAGC 57.178 50.000 1.65 0.00 0.00 3.09
291 292 1.000163 AGGTCTATGGCATCGTTAGCG 60.000 52.381 1.65 0.00 39.92 4.26
292 293 0.784778 GTCTATGGCATCGTTAGCGC 59.215 55.000 1.65 0.00 38.14 5.92
293 294 0.319555 TCTATGGCATCGTTAGCGCC 60.320 55.000 1.65 0.00 46.43 6.53
294 295 1.291877 CTATGGCATCGTTAGCGCCC 61.292 60.000 1.65 0.00 45.63 6.13
295 296 1.754380 TATGGCATCGTTAGCGCCCT 61.754 55.000 1.65 0.00 45.63 5.19
296 297 2.967615 GGCATCGTTAGCGCCCTC 60.968 66.667 2.29 0.00 40.07 4.30
297 298 2.967615 GCATCGTTAGCGCCCTCC 60.968 66.667 2.29 0.00 38.14 4.30
691 692 4.533794 AGGGTATCCTGGGCCCCC 62.534 72.222 22.27 12.16 42.98 5.40
748 750 5.093457 CGTGTTCAGCGAAGTTTCTATCTA 58.907 41.667 0.00 0.00 0.00 1.98
749 751 5.571741 CGTGTTCAGCGAAGTTTCTATCTAA 59.428 40.000 0.00 0.00 0.00 2.10
750 752 6.237332 CGTGTTCAGCGAAGTTTCTATCTAAG 60.237 42.308 0.00 0.00 0.00 2.18
751 753 5.577164 TGTTCAGCGAAGTTTCTATCTAAGC 59.423 40.000 0.00 0.00 0.00 3.09
752 754 4.683832 TCAGCGAAGTTTCTATCTAAGCC 58.316 43.478 0.00 0.00 0.00 4.35
753 755 4.159693 TCAGCGAAGTTTCTATCTAAGCCA 59.840 41.667 0.00 0.00 0.00 4.75
875 895 1.492599 CCTTCCCCTCTTCCAATCTCC 59.507 57.143 0.00 0.00 0.00 3.71
1152 1172 2.264794 CACGCCACCTCTGGTACC 59.735 66.667 4.43 4.43 40.17 3.34
1153 1173 2.119832 ACGCCACCTCTGGTACCT 59.880 61.111 14.36 0.00 40.17 3.08
1154 1174 1.535687 ACGCCACCTCTGGTACCTT 60.536 57.895 14.36 0.00 40.17 3.50
1155 1175 1.218316 CGCCACCTCTGGTACCTTC 59.782 63.158 14.36 0.00 40.17 3.46
1156 1176 1.218316 GCCACCTCTGGTACCTTCG 59.782 63.158 14.36 1.70 40.17 3.79
1157 1177 1.542187 GCCACCTCTGGTACCTTCGT 61.542 60.000 14.36 1.03 40.17 3.85
1158 1178 0.531200 CCACCTCTGGTACCTTCGTC 59.469 60.000 14.36 0.00 32.11 4.20
1159 1179 1.546961 CACCTCTGGTACCTTCGTCT 58.453 55.000 14.36 0.00 32.11 4.18
1161 1181 2.094649 CACCTCTGGTACCTTCGTCTTC 60.095 54.545 14.36 0.00 32.11 2.87
1162 1182 1.132643 CCTCTGGTACCTTCGTCTTCG 59.867 57.143 14.36 0.00 38.55 3.79
1164 1184 0.458025 CTGGTACCTTCGTCTTCGCC 60.458 60.000 14.36 0.00 36.96 5.54
1165 1185 1.153686 GGTACCTTCGTCTTCGCCC 60.154 63.158 4.06 0.00 36.96 6.13
1166 1186 1.515736 GTACCTTCGTCTTCGCCCG 60.516 63.158 0.00 0.00 36.96 6.13
1167 1187 3.346631 TACCTTCGTCTTCGCCCGC 62.347 63.158 0.00 0.00 36.96 6.13
1169 1189 2.881352 CTTCGTCTTCGCCCGCTC 60.881 66.667 0.00 0.00 36.96 5.03
1184 1209 2.632996 CCCGCTCCTCATGGTAGAAATA 59.367 50.000 0.00 0.00 34.23 1.40
1227 1252 4.630785 CGTCTCGCCGCGATCCAT 62.631 66.667 17.22 0.00 34.61 3.41
1268 1293 1.237285 CGTTGAAGAGTTGGGCAGGG 61.237 60.000 0.00 0.00 0.00 4.45
1288 1313 2.487934 GCTGATCGGTTGTATCTGCAT 58.512 47.619 2.89 0.00 43.70 3.96
1517 1542 2.867429 CATGATTGTTTTCCTGCGGTC 58.133 47.619 0.00 0.00 0.00 4.79
1518 1543 0.871722 TGATTGTTTTCCTGCGGTCG 59.128 50.000 0.00 0.00 0.00 4.79
1595 1624 0.322975 GTGTGGGCTCTGTGATGTCT 59.677 55.000 0.00 0.00 0.00 3.41
1669 1699 5.712004 TGGCATGTTCAATGTTCACTATTG 58.288 37.500 0.00 0.00 36.98 1.90
1670 1700 5.243507 TGGCATGTTCAATGTTCACTATTGT 59.756 36.000 0.00 0.00 36.97 2.71
1671 1701 6.158598 GGCATGTTCAATGTTCACTATTGTT 58.841 36.000 0.00 0.00 36.97 2.83
1672 1702 6.646240 GGCATGTTCAATGTTCACTATTGTTT 59.354 34.615 0.00 0.00 36.97 2.83
1673 1703 7.171337 GGCATGTTCAATGTTCACTATTGTTTT 59.829 33.333 0.00 0.00 36.97 2.43
1674 1704 8.550376 GCATGTTCAATGTTCACTATTGTTTTT 58.450 29.630 0.00 0.00 36.97 1.94
1704 1735 6.072948 TGTGTGTTAAAATTACTCGGTCATGG 60.073 38.462 0.00 0.00 0.00 3.66
1712 1743 1.227764 CTCGGTCATGGCTGATGGG 60.228 63.158 9.77 0.00 32.98 4.00
1797 1828 7.029563 GCCAGTGAACAAATAGGAACATTTAG 58.970 38.462 0.00 0.00 0.00 1.85
1868 1899 7.856145 TGGCATGTTTTGTTTTAATTGTCTT 57.144 28.000 0.00 0.00 0.00 3.01
1958 1989 0.792640 CTCGATGTGACACTGTTGGC 59.207 55.000 7.20 0.00 0.00 4.52
1964 1995 1.152798 TGACACTGTTGGCATGCCA 60.153 52.632 35.59 35.59 45.63 4.92
2081 2121 4.382147 GCAATATTATCTCCCGTCCTCTCC 60.382 50.000 0.00 0.00 0.00 3.71
2140 2180 4.863415 GGGGGCAAATCTGTTGGA 57.137 55.556 0.00 0.00 0.00 3.53
2141 2181 2.276869 GGGGGCAAATCTGTTGGAC 58.723 57.895 0.00 0.00 0.00 4.02
2332 2614 0.833409 TGAGCCAGTCCTGAAGCAGA 60.833 55.000 0.00 0.00 32.44 4.26
2383 2666 9.004717 TCGAGGAATTGATGTACAATACAAAAA 57.995 29.630 0.00 0.00 46.90 1.94
2672 2955 2.087646 GGACCAATTGTTCTCTGGAGC 58.912 52.381 4.43 0.00 34.16 4.70
2689 2972 0.107312 AGCGCCTTCTGCATTCATCT 60.107 50.000 2.29 0.00 41.33 2.90
2698 2981 5.068723 CCTTCTGCATTCATCTTTTGCCTAT 59.931 40.000 0.00 0.00 35.51 2.57
2717 3000 6.546772 TGCCTATACTTCATCATGCATTTCAA 59.453 34.615 0.00 0.00 0.00 2.69
2805 3088 1.202627 CCTCAAGTATGCTCCTCCTGC 60.203 57.143 0.00 0.00 0.00 4.85
3402 3685 7.833682 TGAGCCATTTTAGGATTCAATACTTCA 59.166 33.333 0.00 0.00 0.00 3.02
3678 3961 1.140134 ATGGGGCCACTGTGGTAAGT 61.140 55.000 26.48 8.15 40.46 2.24
3921 4204 4.158209 TCCATGGTCTGTCGTCGTTAAATA 59.842 41.667 12.58 0.00 0.00 1.40
3967 4250 1.229082 AGTCCGCCCACCAGAGTTA 60.229 57.895 0.00 0.00 0.00 2.24
4036 4319 5.963586 GTGTCAGGTTGTTTTTCTCTAAACG 59.036 40.000 0.00 0.00 40.14 3.60
4482 4765 7.888021 TCCATTTACGAAATATTATGATGGGCT 59.112 33.333 0.00 0.00 33.92 5.19
4707 4990 1.131126 ACGGCTGAAGAATGATTTGCG 59.869 47.619 0.00 0.00 0.00 4.85
4819 5107 8.565896 AACTATCAGCAGTTTTGATTCATACA 57.434 30.769 0.00 0.00 35.16 2.29
5088 5376 5.186992 TCTCCATCGTGATTTAAAGGAGACA 59.813 40.000 13.36 0.00 43.67 3.41
5234 5523 8.771920 ATTTTGAGTTGTCTCGTGTCATATTA 57.228 30.769 0.00 0.00 43.09 0.98
5327 5617 3.449377 TGGCTACATACGGACTGAAATGA 59.551 43.478 7.93 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.307121 CGTTCACTCTGTATTCTTAAAGATCAT 57.693 33.333 0.00 0.00 0.00 2.45
10 11 7.275779 GCGTTCACTCTGTATTCTTAAAGATCA 59.724 37.037 0.00 0.00 0.00 2.92
11 12 7.254151 GGCGTTCACTCTGTATTCTTAAAGATC 60.254 40.741 0.00 0.00 0.00 2.75
12 13 6.535508 GGCGTTCACTCTGTATTCTTAAAGAT 59.464 38.462 0.00 0.00 0.00 2.40
13 14 5.867716 GGCGTTCACTCTGTATTCTTAAAGA 59.132 40.000 0.00 0.00 0.00 2.52
14 15 5.869888 AGGCGTTCACTCTGTATTCTTAAAG 59.130 40.000 0.00 0.00 0.00 1.85
15 16 5.637810 CAGGCGTTCACTCTGTATTCTTAAA 59.362 40.000 0.00 0.00 0.00 1.52
16 17 5.168569 CAGGCGTTCACTCTGTATTCTTAA 58.831 41.667 0.00 0.00 0.00 1.85
17 18 4.381612 CCAGGCGTTCACTCTGTATTCTTA 60.382 45.833 0.00 0.00 0.00 2.10
18 19 3.589988 CAGGCGTTCACTCTGTATTCTT 58.410 45.455 0.00 0.00 0.00 2.52
19 20 2.093973 CCAGGCGTTCACTCTGTATTCT 60.094 50.000 0.00 0.00 0.00 2.40
20 21 2.271800 CCAGGCGTTCACTCTGTATTC 58.728 52.381 0.00 0.00 0.00 1.75
21 22 1.676014 GCCAGGCGTTCACTCTGTATT 60.676 52.381 0.00 0.00 0.00 1.89
22 23 0.108138 GCCAGGCGTTCACTCTGTAT 60.108 55.000 0.00 0.00 0.00 2.29
23 24 1.292223 GCCAGGCGTTCACTCTGTA 59.708 57.895 0.00 0.00 0.00 2.74
24 25 2.031163 GCCAGGCGTTCACTCTGT 59.969 61.111 0.00 0.00 0.00 3.41
25 26 2.743928 GGCCAGGCGTTCACTCTG 60.744 66.667 5.00 0.00 0.00 3.35
26 27 4.379243 CGGCCAGGCGTTCACTCT 62.379 66.667 5.00 0.00 0.00 3.24
27 28 4.681978 ACGGCCAGGCGTTCACTC 62.682 66.667 13.97 0.00 0.00 3.51
28 29 4.250305 AACGGCCAGGCGTTCACT 62.250 61.111 24.07 4.53 0.00 3.41
29 30 4.025401 CAACGGCCAGGCGTTCAC 62.025 66.667 26.42 2.07 0.00 3.18
40 41 2.045926 ACTCAGGATGGCAACGGC 60.046 61.111 0.00 0.00 42.51 5.68
41 42 1.021390 GTCACTCAGGATGGCAACGG 61.021 60.000 0.00 0.00 42.51 4.44
42 43 0.036952 AGTCACTCAGGATGGCAACG 60.037 55.000 0.00 0.00 42.51 4.10
43 44 1.277557 AGAGTCACTCAGGATGGCAAC 59.722 52.381 7.77 0.00 36.16 4.17
44 45 1.649321 AGAGTCACTCAGGATGGCAA 58.351 50.000 7.77 0.00 36.16 4.52
45 46 2.382882 CTAGAGTCACTCAGGATGGCA 58.617 52.381 7.77 0.00 36.16 4.92
46 47 1.686052 CCTAGAGTCACTCAGGATGGC 59.314 57.143 14.87 0.00 33.66 4.40
47 48 2.955660 GACCTAGAGTCACTCAGGATGG 59.044 54.545 22.87 12.76 45.55 3.51
58 59 3.872771 CGGAGTACAGAAGACCTAGAGTC 59.127 52.174 0.00 0.00 46.71 3.36
59 60 3.518705 TCGGAGTACAGAAGACCTAGAGT 59.481 47.826 0.00 0.00 0.00 3.24
60 61 4.124238 CTCGGAGTACAGAAGACCTAGAG 58.876 52.174 0.00 0.00 0.00 2.43
61 62 3.518705 ACTCGGAGTACAGAAGACCTAGA 59.481 47.826 9.33 0.00 0.00 2.43
62 63 3.623960 CACTCGGAGTACAGAAGACCTAG 59.376 52.174 10.87 0.00 0.00 3.02
63 64 3.607741 CACTCGGAGTACAGAAGACCTA 58.392 50.000 10.87 0.00 0.00 3.08
64 65 2.438411 CACTCGGAGTACAGAAGACCT 58.562 52.381 10.87 0.00 0.00 3.85
65 66 1.473278 CCACTCGGAGTACAGAAGACC 59.527 57.143 10.87 0.00 0.00 3.85
66 67 2.161030 ACCACTCGGAGTACAGAAGAC 58.839 52.381 10.87 0.00 35.59 3.01
67 68 2.581216 ACCACTCGGAGTACAGAAGA 57.419 50.000 10.87 0.00 35.59 2.87
68 69 3.576648 GAAACCACTCGGAGTACAGAAG 58.423 50.000 10.87 0.00 35.59 2.85
69 70 2.298163 GGAAACCACTCGGAGTACAGAA 59.702 50.000 10.87 0.00 35.59 3.02
70 71 1.891150 GGAAACCACTCGGAGTACAGA 59.109 52.381 10.87 0.00 35.59 3.41
71 72 1.893801 AGGAAACCACTCGGAGTACAG 59.106 52.381 10.87 5.47 35.59 2.74
72 73 1.616865 CAGGAAACCACTCGGAGTACA 59.383 52.381 10.87 0.00 35.59 2.90
73 74 1.617357 ACAGGAAACCACTCGGAGTAC 59.383 52.381 10.87 0.84 35.59 2.73
74 75 2.005370 ACAGGAAACCACTCGGAGTA 57.995 50.000 10.87 0.00 35.59 2.59
75 76 2.005370 TACAGGAAACCACTCGGAGT 57.995 50.000 4.45 4.45 35.59 3.85
76 77 2.418746 CCATACAGGAAACCACTCGGAG 60.419 54.545 2.83 2.83 41.22 4.63
77 78 1.553248 CCATACAGGAAACCACTCGGA 59.447 52.381 0.00 0.00 41.22 4.55
78 79 1.278127 ACCATACAGGAAACCACTCGG 59.722 52.381 0.00 0.00 41.22 4.63
79 80 2.618053 GACCATACAGGAAACCACTCG 58.382 52.381 0.00 0.00 41.22 4.18
80 81 2.232941 TCGACCATACAGGAAACCACTC 59.767 50.000 0.00 0.00 41.22 3.51
81 82 2.253610 TCGACCATACAGGAAACCACT 58.746 47.619 0.00 0.00 41.22 4.00
82 83 2.754946 TCGACCATACAGGAAACCAC 57.245 50.000 0.00 0.00 41.22 4.16
83 84 3.262151 TCATTCGACCATACAGGAAACCA 59.738 43.478 0.00 0.00 41.22 3.67
84 85 3.621715 GTCATTCGACCATACAGGAAACC 59.378 47.826 0.00 0.00 41.22 3.27
85 86 4.504858 AGTCATTCGACCATACAGGAAAC 58.495 43.478 0.00 0.00 43.73 2.78
86 87 4.819105 AGTCATTCGACCATACAGGAAA 57.181 40.909 0.00 0.00 43.73 3.13
87 88 4.221924 TGAAGTCATTCGACCATACAGGAA 59.778 41.667 0.00 0.00 43.73 3.36
88 89 3.767131 TGAAGTCATTCGACCATACAGGA 59.233 43.478 0.00 0.00 43.73 3.86
89 90 4.123497 TGAAGTCATTCGACCATACAGG 57.877 45.455 0.00 0.00 43.73 4.00
90 91 4.747108 GGATGAAGTCATTCGACCATACAG 59.253 45.833 0.00 0.00 43.73 2.74
91 92 4.161377 TGGATGAAGTCATTCGACCATACA 59.839 41.667 0.00 0.00 43.73 2.29
92 93 4.693283 TGGATGAAGTCATTCGACCATAC 58.307 43.478 0.00 0.00 43.73 2.39
93 94 4.202253 CCTGGATGAAGTCATTCGACCATA 60.202 45.833 0.00 0.00 43.73 2.74
94 95 3.432749 CCTGGATGAAGTCATTCGACCAT 60.433 47.826 0.00 0.00 43.73 3.55
95 96 2.093500 CCTGGATGAAGTCATTCGACCA 60.093 50.000 0.00 0.00 43.73 4.02
96 97 2.093447 ACCTGGATGAAGTCATTCGACC 60.093 50.000 0.00 0.00 43.73 4.79
97 98 3.190874 GACCTGGATGAAGTCATTCGAC 58.809 50.000 0.00 0.00 42.95 4.20
98 99 2.159240 CGACCTGGATGAAGTCATTCGA 60.159 50.000 0.00 0.00 38.34 3.71
99 100 2.159240 TCGACCTGGATGAAGTCATTCG 60.159 50.000 0.00 6.14 38.34 3.34
100 101 3.118956 ACTCGACCTGGATGAAGTCATTC 60.119 47.826 0.00 0.00 36.57 2.67
101 102 2.834549 ACTCGACCTGGATGAAGTCATT 59.165 45.455 0.00 0.00 36.57 2.57
102 103 2.167281 CACTCGACCTGGATGAAGTCAT 59.833 50.000 0.00 0.00 39.70 3.06
103 104 1.546029 CACTCGACCTGGATGAAGTCA 59.454 52.381 0.00 0.00 0.00 3.41
104 105 1.819288 TCACTCGACCTGGATGAAGTC 59.181 52.381 0.00 0.00 0.00 3.01
105 106 1.924731 TCACTCGACCTGGATGAAGT 58.075 50.000 0.00 0.00 0.00 3.01
106 107 3.319137 TTTCACTCGACCTGGATGAAG 57.681 47.619 0.00 0.00 31.34 3.02
107 108 3.981071 ATTTCACTCGACCTGGATGAA 57.019 42.857 0.00 0.00 0.00 2.57
108 109 3.599343 CAATTTCACTCGACCTGGATGA 58.401 45.455 0.00 0.00 0.00 2.92
109 110 2.679837 CCAATTTCACTCGACCTGGATG 59.320 50.000 0.00 0.00 0.00 3.51
110 111 2.356125 CCCAATTTCACTCGACCTGGAT 60.356 50.000 0.00 0.00 0.00 3.41
111 112 1.003118 CCCAATTTCACTCGACCTGGA 59.997 52.381 0.00 0.00 0.00 3.86
112 113 1.453155 CCCAATTTCACTCGACCTGG 58.547 55.000 0.00 0.00 0.00 4.45
113 114 1.003118 TCCCCAATTTCACTCGACCTG 59.997 52.381 0.00 0.00 0.00 4.00
114 115 1.358152 TCCCCAATTTCACTCGACCT 58.642 50.000 0.00 0.00 0.00 3.85
115 116 2.420058 ATCCCCAATTTCACTCGACC 57.580 50.000 0.00 0.00 0.00 4.79
116 117 4.065789 GGATATCCCCAATTTCACTCGAC 58.934 47.826 11.02 0.00 0.00 4.20
117 118 3.244078 CGGATATCCCCAATTTCACTCGA 60.244 47.826 16.36 0.00 0.00 4.04
118 119 3.067106 CGGATATCCCCAATTTCACTCG 58.933 50.000 16.36 0.00 0.00 4.18
119 120 4.202367 ACTCGGATATCCCCAATTTCACTC 60.202 45.833 16.36 0.00 0.00 3.51
120 121 3.716872 ACTCGGATATCCCCAATTTCACT 59.283 43.478 16.36 0.00 0.00 3.41
121 122 3.815401 CACTCGGATATCCCCAATTTCAC 59.185 47.826 16.36 0.00 0.00 3.18
122 123 3.714280 TCACTCGGATATCCCCAATTTCA 59.286 43.478 16.36 0.00 0.00 2.69
123 124 4.319177 CTCACTCGGATATCCCCAATTTC 58.681 47.826 16.36 0.00 0.00 2.17
124 125 3.073062 CCTCACTCGGATATCCCCAATTT 59.927 47.826 16.36 0.00 0.00 1.82
125 126 2.639839 CCTCACTCGGATATCCCCAATT 59.360 50.000 16.36 0.00 0.00 2.32
126 127 2.260822 CCTCACTCGGATATCCCCAAT 58.739 52.381 16.36 0.00 0.00 3.16
127 128 1.062428 ACCTCACTCGGATATCCCCAA 60.062 52.381 16.36 1.26 0.00 4.12
128 129 0.561184 ACCTCACTCGGATATCCCCA 59.439 55.000 16.36 2.04 0.00 4.96
129 130 0.969894 CACCTCACTCGGATATCCCC 59.030 60.000 16.36 0.00 0.00 4.81
130 131 1.614413 GTCACCTCACTCGGATATCCC 59.386 57.143 16.36 0.00 0.00 3.85
131 132 2.588620 AGTCACCTCACTCGGATATCC 58.411 52.381 12.14 12.14 0.00 2.59
132 133 4.391155 ACTAGTCACCTCACTCGGATATC 58.609 47.826 0.00 0.00 0.00 1.63
133 134 4.391155 GACTAGTCACCTCACTCGGATAT 58.609 47.826 18.20 0.00 0.00 1.63
134 135 3.740452 CGACTAGTCACCTCACTCGGATA 60.740 52.174 22.37 0.00 0.00 2.59
135 136 2.645802 GACTAGTCACCTCACTCGGAT 58.354 52.381 18.20 0.00 0.00 4.18
136 137 1.675116 CGACTAGTCACCTCACTCGGA 60.675 57.143 22.37 0.00 0.00 4.55
137 138 0.727970 CGACTAGTCACCTCACTCGG 59.272 60.000 22.37 0.00 0.00 4.63
138 139 1.661617 CTCGACTAGTCACCTCACTCG 59.338 57.143 22.37 6.12 0.00 4.18
139 140 2.417239 CACTCGACTAGTCACCTCACTC 59.583 54.545 22.37 0.00 35.76 3.51
140 141 2.428491 CACTCGACTAGTCACCTCACT 58.572 52.381 22.37 0.00 35.76 3.41
141 142 1.469308 CCACTCGACTAGTCACCTCAC 59.531 57.143 22.37 0.00 35.76 3.51
142 143 1.350019 TCCACTCGACTAGTCACCTCA 59.650 52.381 22.37 0.00 35.76 3.86
143 144 2.110901 TCCACTCGACTAGTCACCTC 57.889 55.000 22.37 0.00 35.76 3.85
144 145 2.755655 CAATCCACTCGACTAGTCACCT 59.244 50.000 22.37 0.67 35.76 4.00
145 146 2.735762 GCAATCCACTCGACTAGTCACC 60.736 54.545 22.37 0.00 35.76 4.02
146 147 2.094700 TGCAATCCACTCGACTAGTCAC 60.095 50.000 22.37 0.00 35.76 3.67
147 148 2.094700 GTGCAATCCACTCGACTAGTCA 60.095 50.000 22.37 8.93 41.35 3.41
148 149 2.531206 GTGCAATCCACTCGACTAGTC 58.469 52.381 13.18 13.18 41.35 2.59
149 150 2.656560 GTGCAATCCACTCGACTAGT 57.343 50.000 0.00 0.00 41.35 2.57
158 159 1.453155 AACCATCGAGTGCAATCCAC 58.547 50.000 8.83 0.00 45.01 4.02
159 160 2.083774 GAAACCATCGAGTGCAATCCA 58.916 47.619 8.83 0.00 0.00 3.41
160 161 2.083774 TGAAACCATCGAGTGCAATCC 58.916 47.619 8.83 0.00 0.00 3.01
161 162 2.744202 ACTGAAACCATCGAGTGCAATC 59.256 45.455 3.54 3.54 0.00 2.67
162 163 2.744202 GACTGAAACCATCGAGTGCAAT 59.256 45.455 0.00 0.00 0.00 3.56
163 164 2.143122 GACTGAAACCATCGAGTGCAA 58.857 47.619 0.00 0.00 0.00 4.08
164 165 1.795768 GACTGAAACCATCGAGTGCA 58.204 50.000 0.00 0.00 0.00 4.57
165 166 0.716108 CGACTGAAACCATCGAGTGC 59.284 55.000 0.00 0.00 38.10 4.40
166 167 2.347697 TCGACTGAAACCATCGAGTG 57.652 50.000 0.00 0.00 39.80 3.51
167 168 3.695060 AGTATCGACTGAAACCATCGAGT 59.305 43.478 1.87 0.00 46.99 4.18
168 169 4.294416 AGTATCGACTGAAACCATCGAG 57.706 45.455 1.87 0.00 46.99 4.04
170 171 3.797256 GGAAGTATCGACTGAAACCATCG 59.203 47.826 0.00 0.00 35.52 3.84
171 172 4.806247 CAGGAAGTATCGACTGAAACCATC 59.194 45.833 0.00 0.00 35.52 3.51
172 173 4.223032 ACAGGAAGTATCGACTGAAACCAT 59.777 41.667 5.56 0.00 35.52 3.55
173 174 3.576982 ACAGGAAGTATCGACTGAAACCA 59.423 43.478 5.56 0.00 35.52 3.67
174 175 4.189639 ACAGGAAGTATCGACTGAAACC 57.810 45.455 5.56 0.00 35.52 3.27
175 176 4.989168 ACAACAGGAAGTATCGACTGAAAC 59.011 41.667 5.56 0.00 35.52 2.78
176 177 4.988540 CACAACAGGAAGTATCGACTGAAA 59.011 41.667 5.56 0.00 35.52 2.69
177 178 4.556233 CACAACAGGAAGTATCGACTGAA 58.444 43.478 5.56 0.00 35.52 3.02
178 179 3.614150 GCACAACAGGAAGTATCGACTGA 60.614 47.826 5.56 0.00 35.52 3.41
179 180 2.668457 GCACAACAGGAAGTATCGACTG 59.332 50.000 0.00 0.00 35.52 3.51
180 181 2.563179 AGCACAACAGGAAGTATCGACT 59.437 45.455 0.00 0.00 37.59 4.18
181 182 2.960819 AGCACAACAGGAAGTATCGAC 58.039 47.619 0.00 0.00 0.00 4.20
182 183 3.678056 AAGCACAACAGGAAGTATCGA 57.322 42.857 0.00 0.00 0.00 3.59
183 184 3.745975 TCAAAGCACAACAGGAAGTATCG 59.254 43.478 0.00 0.00 0.00 2.92
184 185 5.689383 TTCAAAGCACAACAGGAAGTATC 57.311 39.130 0.00 0.00 0.00 2.24
185 186 5.536161 ACATTCAAAGCACAACAGGAAGTAT 59.464 36.000 0.00 0.00 0.00 2.12
186 187 4.887071 ACATTCAAAGCACAACAGGAAGTA 59.113 37.500 0.00 0.00 0.00 2.24
187 188 3.701040 ACATTCAAAGCACAACAGGAAGT 59.299 39.130 0.00 0.00 0.00 3.01
188 189 4.293415 GACATTCAAAGCACAACAGGAAG 58.707 43.478 0.00 0.00 0.00 3.46
189 190 3.068024 GGACATTCAAAGCACAACAGGAA 59.932 43.478 0.00 0.00 0.00 3.36
190 191 2.622942 GGACATTCAAAGCACAACAGGA 59.377 45.455 0.00 0.00 0.00 3.86
191 192 2.624838 AGGACATTCAAAGCACAACAGG 59.375 45.455 0.00 0.00 0.00 4.00
192 193 3.996150 AGGACATTCAAAGCACAACAG 57.004 42.857 0.00 0.00 0.00 3.16
193 194 4.887071 AGTAAGGACATTCAAAGCACAACA 59.113 37.500 0.00 0.00 0.00 3.33
194 195 5.438761 AGTAAGGACATTCAAAGCACAAC 57.561 39.130 0.00 0.00 0.00 3.32
195 196 5.827797 AGAAGTAAGGACATTCAAAGCACAA 59.172 36.000 0.00 0.00 0.00 3.33
196 197 5.376625 AGAAGTAAGGACATTCAAAGCACA 58.623 37.500 0.00 0.00 0.00 4.57
197 198 5.948992 AGAAGTAAGGACATTCAAAGCAC 57.051 39.130 0.00 0.00 0.00 4.40
198 199 7.450074 TCTTAGAAGTAAGGACATTCAAAGCA 58.550 34.615 0.00 0.00 36.95 3.91
199 200 7.907214 TCTTAGAAGTAAGGACATTCAAAGC 57.093 36.000 0.00 0.00 36.95 3.51
203 204 9.475620 TCACTATCTTAGAAGTAAGGACATTCA 57.524 33.333 0.00 0.00 36.95 2.57
204 205 9.738832 GTCACTATCTTAGAAGTAAGGACATTC 57.261 37.037 0.00 0.00 36.95 2.67
205 206 8.697292 GGTCACTATCTTAGAAGTAAGGACATT 58.303 37.037 0.00 0.00 36.95 2.71
206 207 8.062536 AGGTCACTATCTTAGAAGTAAGGACAT 58.937 37.037 0.00 0.00 36.95 3.06
207 208 7.411808 AGGTCACTATCTTAGAAGTAAGGACA 58.588 38.462 0.00 0.00 36.95 4.02
208 209 7.885009 AGGTCACTATCTTAGAAGTAAGGAC 57.115 40.000 0.00 0.00 36.95 3.85
209 210 8.114102 TCAAGGTCACTATCTTAGAAGTAAGGA 58.886 37.037 0.00 0.00 36.95 3.36
210 211 8.294954 TCAAGGTCACTATCTTAGAAGTAAGG 57.705 38.462 0.00 0.00 36.95 2.69
211 212 8.962679 ACTCAAGGTCACTATCTTAGAAGTAAG 58.037 37.037 0.00 0.00 37.58 2.34
212 213 8.880991 ACTCAAGGTCACTATCTTAGAAGTAA 57.119 34.615 0.00 0.00 0.00 2.24
213 214 9.616156 CTACTCAAGGTCACTATCTTAGAAGTA 57.384 37.037 0.00 0.00 0.00 2.24
214 215 7.558444 CCTACTCAAGGTCACTATCTTAGAAGT 59.442 40.741 0.00 0.00 40.94 3.01
215 216 7.013846 CCCTACTCAAGGTCACTATCTTAGAAG 59.986 44.444 0.00 0.00 44.90 2.85
216 217 6.834451 CCCTACTCAAGGTCACTATCTTAGAA 59.166 42.308 0.00 0.00 44.90 2.10
217 218 6.366340 CCCTACTCAAGGTCACTATCTTAGA 58.634 44.000 0.00 0.00 44.90 2.10
218 219 5.010213 GCCCTACTCAAGGTCACTATCTTAG 59.990 48.000 0.00 0.00 44.90 2.18
219 220 4.894114 GCCCTACTCAAGGTCACTATCTTA 59.106 45.833 0.00 0.00 44.90 2.10
220 221 3.707102 GCCCTACTCAAGGTCACTATCTT 59.293 47.826 0.00 0.00 44.90 2.40
221 222 3.301274 GCCCTACTCAAGGTCACTATCT 58.699 50.000 0.00 0.00 44.90 1.98
222 223 2.034812 CGCCCTACTCAAGGTCACTATC 59.965 54.545 0.00 0.00 44.90 2.08
223 224 2.032620 CGCCCTACTCAAGGTCACTAT 58.967 52.381 0.00 0.00 44.90 2.12
224 225 1.272313 ACGCCCTACTCAAGGTCACTA 60.272 52.381 0.00 0.00 44.90 2.74
225 226 0.542232 ACGCCCTACTCAAGGTCACT 60.542 55.000 0.00 0.00 44.90 3.41
226 227 1.180029 TACGCCCTACTCAAGGTCAC 58.820 55.000 0.00 0.00 44.90 3.67
227 228 2.154567 ATACGCCCTACTCAAGGTCA 57.845 50.000 0.00 0.00 44.90 4.02
228 229 3.484407 TCTATACGCCCTACTCAAGGTC 58.516 50.000 0.00 0.00 44.90 3.85
229 230 3.589951 TCTATACGCCCTACTCAAGGT 57.410 47.619 0.00 0.00 44.90 3.50
230 231 4.079970 TGATCTATACGCCCTACTCAAGG 58.920 47.826 0.00 0.00 46.09 3.61
231 232 4.156922 CCTGATCTATACGCCCTACTCAAG 59.843 50.000 0.00 0.00 0.00 3.02
232 233 4.079970 CCTGATCTATACGCCCTACTCAA 58.920 47.826 0.00 0.00 0.00 3.02
233 234 3.074094 ACCTGATCTATACGCCCTACTCA 59.926 47.826 0.00 0.00 0.00 3.41
234 235 3.688235 ACCTGATCTATACGCCCTACTC 58.312 50.000 0.00 0.00 0.00 2.59
235 236 3.331294 AGACCTGATCTATACGCCCTACT 59.669 47.826 0.00 0.00 35.15 2.57
236 237 3.688235 AGACCTGATCTATACGCCCTAC 58.312 50.000 0.00 0.00 35.15 3.18
237 238 5.712084 ATAGACCTGATCTATACGCCCTA 57.288 43.478 0.00 0.00 46.97 3.53
238 239 2.982339 AGACCTGATCTATACGCCCT 57.018 50.000 0.00 0.00 35.15 5.19
246 247 5.852807 AGGGTAGAGTCATAGACCTGATCTA 59.147 44.000 0.00 0.00 44.25 1.98
247 248 4.667858 AGGGTAGAGTCATAGACCTGATCT 59.332 45.833 0.00 0.00 41.95 2.75
248 249 4.993028 AGGGTAGAGTCATAGACCTGATC 58.007 47.826 0.00 0.00 32.18 2.92
249 250 5.014755 CCTAGGGTAGAGTCATAGACCTGAT 59.985 48.000 0.00 0.00 32.18 2.90
250 251 4.351407 CCTAGGGTAGAGTCATAGACCTGA 59.649 50.000 0.00 0.00 32.18 3.86
251 252 4.105057 ACCTAGGGTAGAGTCATAGACCTG 59.895 50.000 14.81 0.00 32.11 4.00
252 253 4.317752 ACCTAGGGTAGAGTCATAGACCT 58.682 47.826 14.81 0.00 32.11 3.85
253 254 4.351704 AGACCTAGGGTAGAGTCATAGACC 59.648 50.000 14.81 0.00 35.25 3.85
254 255 5.571791 AGACCTAGGGTAGAGTCATAGAC 57.428 47.826 14.81 0.00 35.25 2.59
255 256 6.215841 CCATAGACCTAGGGTAGAGTCATAGA 59.784 46.154 14.81 0.00 35.25 1.98
256 257 6.419791 CCATAGACCTAGGGTAGAGTCATAG 58.580 48.000 14.81 0.00 35.25 2.23
257 258 5.281089 GCCATAGACCTAGGGTAGAGTCATA 60.281 48.000 14.81 0.00 39.09 2.15
258 259 4.509482 GCCATAGACCTAGGGTAGAGTCAT 60.509 50.000 14.81 0.00 39.09 3.06
259 260 3.181431 GCCATAGACCTAGGGTAGAGTCA 60.181 52.174 14.81 0.00 39.09 3.41
260 261 3.181431 TGCCATAGACCTAGGGTAGAGTC 60.181 52.174 14.81 0.00 39.09 3.36
261 262 2.789992 TGCCATAGACCTAGGGTAGAGT 59.210 50.000 14.81 0.00 39.09 3.24
262 263 3.527507 TGCCATAGACCTAGGGTAGAG 57.472 52.381 14.81 0.00 39.09 2.43
263 264 3.561528 CGATGCCATAGACCTAGGGTAGA 60.562 52.174 14.81 0.00 39.09 2.59
264 265 2.755655 CGATGCCATAGACCTAGGGTAG 59.244 54.545 14.81 0.00 39.09 3.18
265 266 2.109480 ACGATGCCATAGACCTAGGGTA 59.891 50.000 14.81 4.55 39.09 3.69
266 267 1.133136 ACGATGCCATAGACCTAGGGT 60.133 52.381 14.81 2.03 39.09 4.34
267 268 1.633774 ACGATGCCATAGACCTAGGG 58.366 55.000 14.81 3.54 39.80 3.53
268 269 3.367498 GCTAACGATGCCATAGACCTAGG 60.367 52.174 7.41 7.41 0.00 3.02
269 270 3.670895 CGCTAACGATGCCATAGACCTAG 60.671 52.174 0.00 0.00 43.93 3.02
270 271 2.228103 CGCTAACGATGCCATAGACCTA 59.772 50.000 0.00 0.00 43.93 3.08
271 272 1.000163 CGCTAACGATGCCATAGACCT 60.000 52.381 0.00 0.00 43.93 3.85
272 273 1.419374 CGCTAACGATGCCATAGACC 58.581 55.000 0.00 0.00 43.93 3.85
273 274 0.784778 GCGCTAACGATGCCATAGAC 59.215 55.000 0.00 0.00 43.93 2.59
274 275 3.195041 GCGCTAACGATGCCATAGA 57.805 52.632 0.00 0.00 43.93 1.98
280 281 2.967615 GGAGGGCGCTAACGATGC 60.968 66.667 7.64 0.00 43.93 3.91
664 665 2.895372 GATACCCTGCCAACCGCG 60.895 66.667 0.00 0.00 42.08 6.46
691 692 2.644992 GCTGACCGCAAAAGGGTG 59.355 61.111 0.00 0.00 38.07 4.61
725 726 3.921021 AGATAGAAACTTCGCTGAACACG 59.079 43.478 0.00 0.00 0.00 4.49
735 737 5.044558 CGAGGTGGCTTAGATAGAAACTTC 58.955 45.833 0.00 0.00 0.00 3.01
748 750 1.739067 GCAAATAGTCGAGGTGGCTT 58.261 50.000 0.00 0.00 0.00 4.35
749 751 0.460284 CGCAAATAGTCGAGGTGGCT 60.460 55.000 0.00 0.00 0.00 4.75
750 752 0.459585 TCGCAAATAGTCGAGGTGGC 60.460 55.000 0.00 0.00 0.00 5.01
751 753 1.560923 CTCGCAAATAGTCGAGGTGG 58.439 55.000 3.96 0.00 45.89 4.61
875 895 1.024579 CGGGAAATGGAGGGAACACG 61.025 60.000 0.00 0.00 0.00 4.49
1152 1172 2.881352 GAGCGGGCGAAGACGAAG 60.881 66.667 0.00 0.00 42.66 3.79
1153 1173 4.430765 GGAGCGGGCGAAGACGAA 62.431 66.667 0.00 0.00 42.66 3.85
1155 1175 4.856607 GAGGAGCGGGCGAAGACG 62.857 72.222 0.00 0.00 33.41 4.18
1156 1176 3.082579 ATGAGGAGCGGGCGAAGAC 62.083 63.158 0.00 0.00 0.00 3.01
1157 1177 2.759973 ATGAGGAGCGGGCGAAGA 60.760 61.111 0.00 0.00 0.00 2.87
1158 1178 2.587194 CATGAGGAGCGGGCGAAG 60.587 66.667 0.00 0.00 0.00 3.79
1159 1179 4.161295 CCATGAGGAGCGGGCGAA 62.161 66.667 0.00 0.00 36.89 4.70
1161 1181 3.506059 CTACCATGAGGAGCGGGCG 62.506 68.421 0.00 0.00 38.69 6.13
1162 1182 1.686325 TTCTACCATGAGGAGCGGGC 61.686 60.000 0.00 0.00 38.69 6.13
1164 1184 2.918712 ATTTCTACCATGAGGAGCGG 57.081 50.000 0.00 0.00 38.69 5.52
1165 1185 4.855715 TCTATTTCTACCATGAGGAGCG 57.144 45.455 0.00 0.00 38.69 5.03
1166 1186 4.994217 GCTTCTATTTCTACCATGAGGAGC 59.006 45.833 0.00 0.00 38.69 4.70
1167 1187 6.418057 AGCTTCTATTTCTACCATGAGGAG 57.582 41.667 0.00 0.00 38.69 3.69
1169 1189 7.680588 GCAAAAGCTTCTATTTCTACCATGAGG 60.681 40.741 0.00 0.00 42.21 3.86
1171 1191 6.886459 AGCAAAAGCTTCTATTTCTACCATGA 59.114 34.615 0.00 0.00 0.00 3.07
1184 1209 3.325293 TCAGATCGAGCAAAAGCTTCT 57.675 42.857 2.38 0.00 0.00 2.85
1227 1252 5.526846 ACGAACTAAAACCAACCGATTTGTA 59.473 36.000 0.00 0.00 32.71 2.41
1268 1293 1.939974 TGCAGATACAACCGATCAGC 58.060 50.000 0.00 0.00 36.62 4.26
1277 1302 4.320608 TGCGATGACTATGCAGATACAA 57.679 40.909 0.00 0.00 34.03 2.41
1288 1313 6.582295 GCATTTTTCTTTTCTTGCGATGACTA 59.418 34.615 0.00 0.00 0.00 2.59
1360 1385 6.649557 CCCTCTAGTAAACCACAGTTAACAAG 59.350 42.308 8.61 2.39 34.19 3.16
1529 1554 7.458409 AGCTCAACAATCAAATCACACTATT 57.542 32.000 0.00 0.00 0.00 1.73
1530 1555 8.618677 CATAGCTCAACAATCAAATCACACTAT 58.381 33.333 0.00 0.00 0.00 2.12
1531 1556 7.607607 ACATAGCTCAACAATCAAATCACACTA 59.392 33.333 0.00 0.00 0.00 2.74
1533 1558 6.525628 CACATAGCTCAACAATCAAATCACAC 59.474 38.462 0.00 0.00 0.00 3.82
1534 1559 6.349528 CCACATAGCTCAACAATCAAATCACA 60.350 38.462 0.00 0.00 0.00 3.58
1595 1624 3.006537 AGGTTAAGACACAGCTAAGCGAA 59.993 43.478 0.00 0.00 0.00 4.70
1628 1658 4.076394 TGCCAAGTACACCAAAAGGATAC 58.924 43.478 0.00 0.00 0.00 2.24
1675 1705 8.242053 TGACCGAGTAATTTTAACACACAAAAA 58.758 29.630 0.00 0.00 0.00 1.94
1680 1710 6.311723 CCATGACCGAGTAATTTTAACACAC 58.688 40.000 0.00 0.00 0.00 3.82
1682 1712 5.123344 AGCCATGACCGAGTAATTTTAACAC 59.877 40.000 0.00 0.00 0.00 3.32
1696 1727 2.903855 GCCCATCAGCCATGACCG 60.904 66.667 0.00 0.00 38.57 4.79
1712 1743 3.355957 AAGGATGAGCAGGCCAGGC 62.356 63.158 5.01 8.72 0.00 4.85
1759 1790 2.441410 TCACTGGCGCCAATCAATAAA 58.559 42.857 32.09 3.44 0.00 1.40
1765 1796 0.313672 TTTGTTCACTGGCGCCAATC 59.686 50.000 32.09 15.31 0.00 2.67
1797 1828 2.245096 GCATCTTGCATGTTCACGAAC 58.755 47.619 2.89 2.89 44.26 3.95
1900 1931 9.750783 ATCAGCCTGATAAATTATTATTCAGCT 57.249 29.630 5.13 8.60 34.88 4.24
1958 1989 2.299993 ATGTCGACACTAGTGGCATG 57.700 50.000 27.93 13.12 38.95 4.06
1964 1995 3.059884 CAGCACAAATGTCGACACTAGT 58.940 45.455 22.71 16.00 0.00 2.57
2081 2121 3.007940 TGTTCCTATGTCCAACAGTCCAG 59.992 47.826 0.00 0.00 0.00 3.86
2087 2127 2.103432 ACGTGTGTTCCTATGTCCAACA 59.897 45.455 0.00 0.00 0.00 3.33
2140 2180 8.547967 AACAACTCAAATAAGTATGATGTCGT 57.452 30.769 0.00 0.00 0.00 4.34
2141 2181 9.478019 GAAACAACTCAAATAAGTATGATGTCG 57.522 33.333 0.00 0.00 0.00 4.35
2332 2614 5.638133 AGCATGCCCTTAATGAAGACATAT 58.362 37.500 15.66 0.00 35.50 1.78
2383 2666 6.021030 TGGTAGGGAAACTGTTACTGATACT 58.979 40.000 0.00 0.00 0.00 2.12
2389 2672 6.309389 CCTTATGGTAGGGAAACTGTTACT 57.691 41.667 0.00 0.00 0.00 2.24
2413 2696 3.668596 AATCAAGCAACGCGGTATTAC 57.331 42.857 12.47 0.00 0.00 1.89
2689 2972 6.964807 ATGCATGATGAAGTATAGGCAAAA 57.035 33.333 0.00 0.00 33.33 2.44
2805 3088 9.303537 GGAAAAGCATAACTAGACTACTAACAG 57.696 37.037 0.00 0.00 0.00 3.16
2835 3118 8.444783 TGGTAATGCTCATTTGGGTACTAATAT 58.555 33.333 0.00 0.00 32.50 1.28
3087 3370 6.795098 ACGAAGTTCATAACTGCAATGTAA 57.205 33.333 3.32 0.00 37.78 2.41
3306 3589 7.598869 GTCAGTCCTTCCCAACAAAATAATTTC 59.401 37.037 0.00 0.00 0.00 2.17
3402 3685 7.870509 TCTATTCTGCAATTGAAATAGTGCT 57.129 32.000 22.03 6.25 37.87 4.40
3579 3862 7.870954 TGTTCAGTACAACGAATCTTAGATTGT 59.129 33.333 12.63 8.06 37.30 2.71
3921 4204 2.034066 CATGCCCACCAACCGAGT 59.966 61.111 0.00 0.00 0.00 4.18
3950 4233 1.218316 CTAACTCTGGTGGGCGGAC 59.782 63.158 0.00 0.00 0.00 4.79
3967 4250 1.649321 TTCCACCTCATGCAGAGTCT 58.351 50.000 10.86 0.00 43.12 3.24
3982 4265 0.107897 ACGGCGCAGAATACATTCCA 60.108 50.000 16.26 0.00 37.51 3.53
4036 4319 0.745845 CACTAGCACCTGGTGGCATC 60.746 60.000 27.02 11.16 38.91 3.91
4482 4765 7.066163 CAGTCATGAATTATTCTGTAGCAACCA 59.934 37.037 6.50 0.00 0.00 3.67
4638 4921 1.138247 GGAGCGCTGGCAAAATGAG 59.862 57.895 18.48 0.00 43.41 2.90
4819 5107 7.659390 GGCATCTTTCTATAACTACAGCATCTT 59.341 37.037 0.00 0.00 0.00 2.40
4836 5124 2.238521 TCAACCCACAAGGCATCTTTC 58.761 47.619 0.00 0.00 40.58 2.62
5088 5376 9.674068 GTCCCTAAAGATAGACAAAAATTCTCT 57.326 33.333 0.00 0.00 0.00 3.10
5160 5449 7.020827 TCAAATCAGCTTCCTATAATAGGGG 57.979 40.000 0.00 0.00 46.24 4.79
5174 5463 4.389890 TTTGTGCAGTTTCAAATCAGCT 57.610 36.364 0.00 0.00 0.00 4.24
5234 5523 2.396590 CCATACGGGTAAAGTGCTGT 57.603 50.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.