Multiple sequence alignment - TraesCS6B01G178900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G178900 chr6B 100.000 2519 0 0 1 2519 198976601 198979119 0.000000e+00 4652.0
1 TraesCS6B01G178900 chr6B 94.872 78 4 0 2111 2188 198986713 198986790 3.400000e-24 122.0
2 TraesCS6B01G178900 chr6D 86.916 1842 134 57 36 1793 110330879 110332697 0.000000e+00 1967.0
3 TraesCS6B01G178900 chr6D 89.655 232 18 3 1866 2097 110404041 110404266 8.810000e-75 291.0
4 TraesCS6B01G178900 chr6D 93.590 78 5 0 2111 2188 110445112 110445189 1.580000e-22 117.0
5 TraesCS6B01G178900 chr6D 95.652 46 1 1 1 45 240728444 240728399 3.480000e-09 73.1
6 TraesCS6B01G178900 chr6D 100.000 34 0 0 1828 1861 110332707 110332740 2.090000e-06 63.9
7 TraesCS6B01G178900 chr6A 89.171 1302 63 34 608 1861 134934642 134935913 0.000000e+00 1552.0
8 TraesCS6B01G178900 chr6A 85.986 421 44 3 40 453 134934187 134934599 1.070000e-118 436.0
9 TraesCS6B01G178900 chr6A 89.623 318 29 4 2193 2507 134938636 134938952 3.900000e-108 401.0
10 TraesCS6B01G178900 chr6A 96.250 240 7 2 1860 2097 134938389 134938628 2.350000e-105 392.0
11 TraesCS6B01G178900 chr7B 80.783 281 38 7 1044 1310 672779891 672779613 3.280000e-49 206.0
12 TraesCS6B01G178900 chr7B 80.139 287 37 13 1040 1310 672775982 672775700 1.980000e-46 196.0
13 TraesCS6B01G178900 chr7B 79.298 285 37 13 1044 1311 672860793 672860514 1.990000e-41 180.0
14 TraesCS6B01G178900 chr7B 97.561 41 0 1 1 41 4605325 4605286 4.500000e-08 69.4
15 TraesCS6B01G178900 chr7A 80.212 283 44 7 1040 1310 688356417 688356135 4.250000e-48 202.0
16 TraesCS6B01G178900 chr7A 79.859 283 39 12 1044 1311 688462610 688462331 9.200000e-45 191.0
17 TraesCS6B01G178900 chr7A 79.787 282 39 12 1044 1310 688360334 688360056 3.310000e-44 189.0
18 TraesCS6B01G178900 chr7D 79.054 296 40 14 1034 1310 595510203 595509911 1.540000e-42 183.0
19 TraesCS6B01G178900 chr7D 78.746 287 42 13 1044 1314 595586964 595586681 9.260000e-40 174.0
20 TraesCS6B01G178900 chr7D 78.700 277 44 9 1047 1311 595668935 595668662 1.200000e-38 171.0
21 TraesCS6B01G178900 chr7D 92.308 52 1 2 1 49 496316412 496316361 1.250000e-08 71.3
22 TraesCS6B01G178900 chr3B 100.000 40 0 0 1 40 751050158 751050119 9.660000e-10 75.0
23 TraesCS6B01G178900 chr2D 97.674 43 1 0 1 43 4601304 4601262 9.660000e-10 75.0
24 TraesCS6B01G178900 chr2A 97.619 42 1 0 1 42 72606008 72605967 3.480000e-09 73.1
25 TraesCS6B01G178900 chr4B 97.561 41 1 0 1 41 518869293 518869253 1.250000e-08 71.3
26 TraesCS6B01G178900 chr4A 97.561 41 1 0 1 41 743653770 743653730 1.250000e-08 71.3
27 TraesCS6B01G178900 chr2B 93.333 45 3 0 1 45 717130225 717130269 1.620000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G178900 chr6B 198976601 198979119 2518 False 4652.00 4652 100.0000 1 2519 1 chr6B.!!$F1 2518
1 TraesCS6B01G178900 chr6D 110330879 110332740 1861 False 1015.45 1967 93.4580 36 1861 2 chr6D.!!$F3 1825
2 TraesCS6B01G178900 chr6A 134934187 134938952 4765 False 695.25 1552 90.2575 40 2507 4 chr6A.!!$F1 2467
3 TraesCS6B01G178900 chr7B 672775700 672779891 4191 True 201.00 206 80.4610 1040 1310 2 chr7B.!!$R3 270

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
76 77 0.248458 CAACGACAACAGTGTTGGCC 60.248 55.0 33.32 24.2 42.72 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1796 5831 1.002544 TGGTTGTCGTGTATGCATCCA 59.997 47.619 0.19 0.0 31.76 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 0.248458 CAACGACAACAGTGTTGGCC 60.248 55.000 33.32 24.20 42.72 5.36
77 78 1.381165 AACGACAACAGTGTTGGCCC 61.381 55.000 33.32 22.14 42.72 5.80
80 81 0.533308 GACAACAGTGTTGGCCCGTA 60.533 55.000 33.32 0.00 38.41 4.02
89 90 1.154197 GTTGGCCCGTAGTTCACTTC 58.846 55.000 0.00 0.00 0.00 3.01
125 126 8.865090 TGGTTGTTGAAACACCTATCATATTTT 58.135 29.630 12.74 0.00 38.92 1.82
127 128 9.906660 GTTGTTGAAACACCTATCATATTTTCA 57.093 29.630 0.00 0.00 38.92 2.69
147 148 5.205517 TCACAGGGTTCCCATCATTAATT 57.794 39.130 10.73 0.00 0.00 1.40
193 194 9.674824 GCAATTGATCTAGTAATCATTTTCTGG 57.325 33.333 10.34 0.00 35.65 3.86
215 216 1.070445 CATCCTCGATGCCCTGACC 59.930 63.158 0.00 0.00 33.17 4.02
221 222 2.202987 GATGCCCTGACCAGCTCG 60.203 66.667 0.00 0.00 0.00 5.03
411 423 6.327154 TGTGTGTATTGACTATGGTTACTCG 58.673 40.000 0.00 0.00 0.00 4.18
413 425 5.419788 TGTGTATTGACTATGGTTACTCGGT 59.580 40.000 0.00 0.00 0.00 4.69
414 426 6.071221 TGTGTATTGACTATGGTTACTCGGTT 60.071 38.462 0.00 0.00 0.00 4.44
418 449 7.598759 ATTGACTATGGTTACTCGGTTAGAT 57.401 36.000 0.00 0.00 0.00 1.98
431 462 7.171630 ACTCGGTTAGATTTGAAGTATGAGT 57.828 36.000 0.00 0.00 0.00 3.41
453 484 8.154203 TGAGTAGGATATGTGTTTGAGTTGAAA 58.846 33.333 0.00 0.00 0.00 2.69
454 485 8.553459 AGTAGGATATGTGTTTGAGTTGAAAG 57.447 34.615 0.00 0.00 0.00 2.62
496 527 0.527565 AAAAGCATTGCAGGGTAGCG 59.472 50.000 11.91 0.00 37.31 4.26
503 534 3.181491 GCATTGCAGGGTAGCGAAAATAA 60.181 43.478 3.15 0.00 37.31 1.40
528 559 2.832129 CAGTGAACCTGGTAGGCTCTTA 59.168 50.000 0.00 0.00 39.63 2.10
529 560 2.832733 AGTGAACCTGGTAGGCTCTTAC 59.167 50.000 0.00 0.00 39.63 2.34
530 561 2.565834 GTGAACCTGGTAGGCTCTTACA 59.434 50.000 0.00 0.00 39.63 2.41
531 562 2.565834 TGAACCTGGTAGGCTCTTACAC 59.434 50.000 0.00 0.00 39.63 2.90
532 563 2.320681 ACCTGGTAGGCTCTTACACA 57.679 50.000 0.00 0.00 39.63 3.72
533 564 1.900486 ACCTGGTAGGCTCTTACACAC 59.100 52.381 0.00 0.00 39.63 3.82
534 565 1.899814 CCTGGTAGGCTCTTACACACA 59.100 52.381 0.00 0.00 0.00 3.72
536 567 3.589988 CTGGTAGGCTCTTACACACAAG 58.410 50.000 0.00 0.00 0.00 3.16
537 568 3.236047 TGGTAGGCTCTTACACACAAGA 58.764 45.455 0.00 0.00 33.55 3.02
538 569 3.838317 TGGTAGGCTCTTACACACAAGAT 59.162 43.478 0.00 0.00 34.14 2.40
547 578 5.924356 TCTTACACACAAGATCTGGAACAA 58.076 37.500 3.42 0.00 30.35 2.83
552 583 4.758674 CACACAAGATCTGGAACAAGTCAT 59.241 41.667 3.42 0.00 38.70 3.06
553 584 4.758674 ACACAAGATCTGGAACAAGTCATG 59.241 41.667 3.42 0.00 38.70 3.07
554 585 4.155462 CACAAGATCTGGAACAAGTCATGG 59.845 45.833 3.42 0.00 38.70 3.66
555 586 2.996631 AGATCTGGAACAAGTCATGGC 58.003 47.619 0.00 0.00 38.70 4.40
556 587 2.575279 AGATCTGGAACAAGTCATGGCT 59.425 45.455 0.00 0.00 38.70 4.75
557 588 2.479566 TCTGGAACAAGTCATGGCTC 57.520 50.000 0.00 0.00 38.70 4.70
558 589 1.699083 TCTGGAACAAGTCATGGCTCA 59.301 47.619 0.00 0.00 38.70 4.26
599 630 4.684134 ACATGGCTTTGGCGGGCT 62.684 61.111 2.38 0.00 39.81 5.19
601 632 3.070576 ATGGCTTTGGCGGGCTTC 61.071 61.111 2.38 0.00 39.81 3.86
602 633 3.590466 ATGGCTTTGGCGGGCTTCT 62.590 57.895 2.38 0.00 39.81 2.85
603 634 2.045340 GGCTTTGGCGGGCTTCTA 60.045 61.111 2.38 0.00 39.81 2.10
617 648 5.739358 GCGGGCTTCTAGTAGTTGATATGTT 60.739 44.000 0.00 0.00 0.00 2.71
618 649 5.692204 CGGGCTTCTAGTAGTTGATATGTTG 59.308 44.000 0.00 0.00 0.00 3.33
648 686 4.820716 AGTACACGAGTCCATAGTCATACC 59.179 45.833 0.00 0.00 0.00 2.73
654 692 2.111972 AGTCCATAGTCATACCCCGGAT 59.888 50.000 0.73 0.00 0.00 4.18
656 694 3.446516 GTCCATAGTCATACCCCGGATAC 59.553 52.174 0.73 0.00 0.00 2.24
723 764 9.846248 ATTGTCTTTTCATATACTTTCTGCAAC 57.154 29.630 0.00 0.00 0.00 4.17
770 811 4.352600 ACTAGTTCTTATGACACGTCGG 57.647 45.455 0.00 0.00 0.00 4.79
867 930 8.654751 ACTGTATGGACCTCTATATATAGGGA 57.345 38.462 19.57 1.59 37.18 4.20
868 931 9.255968 ACTGTATGGACCTCTATATATAGGGAT 57.744 37.037 19.57 3.43 37.18 3.85
884 947 2.182312 AGGGATAGGGACCAGAGCAATA 59.818 50.000 0.00 0.00 0.00 1.90
885 948 2.303311 GGGATAGGGACCAGAGCAATAC 59.697 54.545 0.00 0.00 0.00 1.89
886 949 3.243724 GGATAGGGACCAGAGCAATACT 58.756 50.000 0.00 0.00 0.00 2.12
887 950 4.417437 GGATAGGGACCAGAGCAATACTA 58.583 47.826 0.00 0.00 0.00 1.82
888 951 4.221041 GGATAGGGACCAGAGCAATACTAC 59.779 50.000 0.00 0.00 0.00 2.73
889 952 3.406512 AGGGACCAGAGCAATACTACT 57.593 47.619 0.00 0.00 0.00 2.57
890 953 3.301274 AGGGACCAGAGCAATACTACTC 58.699 50.000 0.00 0.00 0.00 2.59
891 954 2.365941 GGGACCAGAGCAATACTACTCC 59.634 54.545 0.00 0.00 33.18 3.85
951 1023 1.821759 CACCACCCACGCAACAGAA 60.822 57.895 0.00 0.00 0.00 3.02
1404 5422 3.689858 GCAGGTCAGAGGAGAGGAAGATA 60.690 52.174 0.00 0.00 0.00 1.98
1461 5479 2.876645 GAAGACGACGCGCAGAGG 60.877 66.667 5.73 0.00 0.00 3.69
1480 5498 3.073735 AGAGCCCGAGTGAGCTGG 61.074 66.667 0.00 0.00 40.11 4.85
1603 5632 1.220749 GCGGGGATCTTGTGCTGTA 59.779 57.895 0.00 0.00 0.00 2.74
1617 5646 4.245660 TGTGCTGTACAATTCAGTAGCTC 58.754 43.478 0.00 0.00 36.06 4.09
1678 5709 8.549548 TCGTTTAGACATTTTGATCGTTTGTAA 58.450 29.630 0.00 0.00 0.00 2.41
1793 5828 5.536161 ACTTAGTTTGCAAGTGATTGTGGAT 59.464 36.000 0.00 0.00 34.96 3.41
1794 5829 4.247267 AGTTTGCAAGTGATTGTGGATG 57.753 40.909 0.00 0.00 0.00 3.51
1795 5830 2.728690 TTGCAAGTGATTGTGGATGC 57.271 45.000 0.00 0.00 0.00 3.91
1796 5831 1.913778 TGCAAGTGATTGTGGATGCT 58.086 45.000 0.00 0.00 34.97 3.79
1797 5832 1.542472 TGCAAGTGATTGTGGATGCTG 59.458 47.619 0.00 0.00 34.97 4.41
1798 5833 1.135199 GCAAGTGATTGTGGATGCTGG 60.135 52.381 0.00 0.00 0.00 4.85
1799 5834 2.439409 CAAGTGATTGTGGATGCTGGA 58.561 47.619 0.00 0.00 0.00 3.86
1816 5851 1.002544 TGGATGCATACACGACAACCA 59.997 47.619 7.78 0.05 34.30 3.67
1817 5852 2.288666 GGATGCATACACGACAACCAT 58.711 47.619 3.28 0.00 0.00 3.55
1818 5853 3.118592 TGGATGCATACACGACAACCATA 60.119 43.478 7.78 0.00 32.04 2.74
1819 5854 4.065088 GGATGCATACACGACAACCATAT 58.935 43.478 3.28 0.00 0.00 1.78
1820 5855 4.083855 GGATGCATACACGACAACCATATG 60.084 45.833 3.28 0.00 0.00 1.78
1861 5896 2.426024 CAGATGGAAGGAAGCAACATGG 59.574 50.000 0.00 0.00 0.00 3.66
1862 5897 1.753073 GATGGAAGGAAGCAACATGGG 59.247 52.381 0.00 0.00 0.00 4.00
1868 8382 1.428912 AGGAAGCAACATGGGGAAAGA 59.571 47.619 0.00 0.00 0.00 2.52
1870 8384 1.821136 GAAGCAACATGGGGAAAGAGG 59.179 52.381 0.00 0.00 0.00 3.69
1889 8403 3.567397 AGGGCTCACTCTATTCGTATGT 58.433 45.455 0.00 0.00 0.00 2.29
1919 8433 9.699410 TGTATTCCTACATTTTGAGAATCCAAT 57.301 29.630 0.00 0.00 32.88 3.16
2039 8553 4.439289 GCACCATGAAGAGGAAGCAATAAC 60.439 45.833 0.00 0.00 33.28 1.89
2097 8611 2.762327 ACAAATCATGGTTCCTGCCATC 59.238 45.455 0.00 0.00 45.47 3.51
2098 8612 2.761767 CAAATCATGGTTCCTGCCATCA 59.238 45.455 0.00 0.00 45.47 3.07
2100 8614 2.061509 TCATGGTTCCTGCCATCATG 57.938 50.000 0.00 0.00 45.47 3.07
2101 8615 1.037493 CATGGTTCCTGCCATCATGG 58.963 55.000 0.00 0.00 45.47 3.66
2102 8616 0.632835 ATGGTTCCTGCCATCATGGT 59.367 50.000 5.31 0.00 45.47 3.55
2103 8617 0.323633 TGGTTCCTGCCATCATGGTG 60.324 55.000 5.31 0.00 40.46 4.17
2104 8618 0.034186 GGTTCCTGCCATCATGGTGA 60.034 55.000 7.78 0.00 40.46 4.02
2105 8619 1.386533 GTTCCTGCCATCATGGTGAG 58.613 55.000 7.78 1.62 40.46 3.51
2106 8620 0.394762 TTCCTGCCATCATGGTGAGC 60.395 55.000 7.78 9.92 40.46 4.26
2107 8621 1.826921 CCTGCCATCATGGTGAGCC 60.827 63.158 7.78 0.00 40.46 4.70
2108 8622 2.124612 TGCCATCATGGTGAGCCG 60.125 61.111 7.78 0.00 40.46 5.52
2109 8623 2.903855 GCCATCATGGTGAGCCGG 60.904 66.667 7.78 0.00 40.46 6.13
2110 8624 2.903855 CCATCATGGTGAGCCGGC 60.904 66.667 21.89 21.89 37.67 6.13
2111 8625 2.191375 CATCATGGTGAGCCGGCT 59.809 61.111 33.48 33.48 37.67 5.52
2112 8626 2.184830 CATCATGGTGAGCCGGCTG 61.185 63.158 38.41 20.13 37.67 4.85
2113 8627 3.411114 ATCATGGTGAGCCGGCTGG 62.411 63.158 38.41 15.69 37.67 4.85
2114 8628 4.415150 CATGGTGAGCCGGCTGGT 62.415 66.667 38.41 11.11 37.67 4.00
2115 8629 4.101448 ATGGTGAGCCGGCTGGTC 62.101 66.667 38.41 21.37 41.96 4.02
2117 8631 3.075005 GGTGAGCCGGCTGGTCTA 61.075 66.667 38.41 11.95 42.12 2.59
2118 8632 2.435693 GGTGAGCCGGCTGGTCTAT 61.436 63.158 38.41 8.09 42.12 1.98
2119 8633 1.068250 GTGAGCCGGCTGGTCTATC 59.932 63.158 38.41 18.82 42.12 2.08
2120 8634 1.381191 TGAGCCGGCTGGTCTATCA 60.381 57.895 38.41 21.58 42.12 2.15
2121 8635 0.975556 TGAGCCGGCTGGTCTATCAA 60.976 55.000 38.41 5.67 42.12 2.57
2122 8636 0.249657 GAGCCGGCTGGTCTATCAAG 60.250 60.000 38.41 0.00 38.47 3.02
2123 8637 1.889573 GCCGGCTGGTCTATCAAGC 60.890 63.158 22.15 0.00 37.67 4.01
2124 8638 1.227674 CCGGCTGGTCTATCAAGCC 60.228 63.158 2.29 2.78 41.84 4.35
2125 8639 4.445699 GGCTGGTCTATCAAGCCG 57.554 61.111 0.00 0.00 35.86 5.52
2126 8640 1.227674 GGCTGGTCTATCAAGCCGG 60.228 63.158 0.00 0.00 35.86 6.13
2127 8641 1.522569 GCTGGTCTATCAAGCCGGT 59.477 57.895 1.90 0.00 31.54 5.28
2128 8642 0.107654 GCTGGTCTATCAAGCCGGTT 60.108 55.000 1.90 0.00 31.54 4.44
2129 8643 1.138266 GCTGGTCTATCAAGCCGGTTA 59.862 52.381 1.90 0.00 31.54 2.85
2130 8644 2.803492 GCTGGTCTATCAAGCCGGTTAG 60.803 54.545 1.90 0.00 31.54 2.34
2131 8645 2.431057 CTGGTCTATCAAGCCGGTTAGT 59.569 50.000 1.90 0.00 0.00 2.24
2132 8646 2.167693 TGGTCTATCAAGCCGGTTAGTG 59.832 50.000 1.90 0.00 0.00 2.74
2133 8647 2.202566 GTCTATCAAGCCGGTTAGTGC 58.797 52.381 1.90 0.00 0.00 4.40
2134 8648 2.108168 TCTATCAAGCCGGTTAGTGCT 58.892 47.619 1.90 0.00 40.17 4.40
2135 8649 3.067742 GTCTATCAAGCCGGTTAGTGCTA 59.932 47.826 1.90 0.00 36.66 3.49
2136 8650 3.702548 TCTATCAAGCCGGTTAGTGCTAA 59.297 43.478 1.90 0.00 36.66 3.09
2137 8651 3.560636 ATCAAGCCGGTTAGTGCTAAT 57.439 42.857 1.90 0.00 36.66 1.73
2138 8652 3.343941 TCAAGCCGGTTAGTGCTAATT 57.656 42.857 1.90 0.00 36.66 1.40
2139 8653 4.475051 TCAAGCCGGTTAGTGCTAATTA 57.525 40.909 1.90 0.00 36.66 1.40
2140 8654 4.834534 TCAAGCCGGTTAGTGCTAATTAA 58.165 39.130 1.90 0.00 36.66 1.40
2141 8655 4.632688 TCAAGCCGGTTAGTGCTAATTAAC 59.367 41.667 1.90 0.00 36.66 2.01
2142 8656 4.210724 AGCCGGTTAGTGCTAATTAACA 57.789 40.909 1.90 0.00 35.69 2.41
2143 8657 3.937079 AGCCGGTTAGTGCTAATTAACAC 59.063 43.478 10.43 10.43 35.69 3.32
2144 8658 3.242188 GCCGGTTAGTGCTAATTAACACG 60.242 47.826 12.18 2.09 41.72 4.49
2145 8659 3.242188 CCGGTTAGTGCTAATTAACACGC 60.242 47.826 12.18 7.66 41.72 5.34
2146 8660 3.242188 CGGTTAGTGCTAATTAACACGCC 60.242 47.826 12.18 13.60 41.72 5.68
2147 8661 3.242188 GGTTAGTGCTAATTAACACGCCG 60.242 47.826 12.18 0.00 41.72 6.46
2148 8662 0.725117 AGTGCTAATTAACACGCCGC 59.275 50.000 12.18 0.00 41.72 6.53
2149 8663 0.247934 GTGCTAATTAACACGCCGCC 60.248 55.000 3.38 0.00 0.00 6.13
2150 8664 0.391927 TGCTAATTAACACGCCGCCT 60.392 50.000 0.00 0.00 0.00 5.52
2151 8665 1.134759 TGCTAATTAACACGCCGCCTA 60.135 47.619 0.00 0.00 0.00 3.93
2152 8666 2.140717 GCTAATTAACACGCCGCCTAT 58.859 47.619 0.00 0.00 0.00 2.57
2153 8667 2.157085 GCTAATTAACACGCCGCCTATC 59.843 50.000 0.00 0.00 0.00 2.08
2154 8668 1.214367 AATTAACACGCCGCCTATCG 58.786 50.000 0.00 0.00 38.08 2.92
2155 8669 0.103572 ATTAACACGCCGCCTATCGT 59.896 50.000 0.00 0.00 39.79 3.73
2156 8670 0.526096 TTAACACGCCGCCTATCGTC 60.526 55.000 0.00 0.00 36.73 4.20
2157 8671 1.378882 TAACACGCCGCCTATCGTCT 61.379 55.000 0.00 0.00 36.73 4.18
2158 8672 2.104331 CACGCCGCCTATCGTCTT 59.896 61.111 0.00 0.00 36.73 3.01
2159 8673 1.357690 CACGCCGCCTATCGTCTTA 59.642 57.895 0.00 0.00 36.73 2.10
2160 8674 0.660595 CACGCCGCCTATCGTCTTAG 60.661 60.000 0.00 0.00 36.73 2.18
2161 8675 1.081376 CGCCGCCTATCGTCTTAGG 60.081 63.158 4.98 4.98 41.54 2.69
2162 8676 1.793134 CGCCGCCTATCGTCTTAGGT 61.793 60.000 9.49 0.00 40.83 3.08
2163 8677 0.388294 GCCGCCTATCGTCTTAGGTT 59.612 55.000 9.49 0.00 40.83 3.50
2164 8678 1.202498 GCCGCCTATCGTCTTAGGTTT 60.202 52.381 9.49 0.00 40.83 3.27
2165 8679 2.035066 GCCGCCTATCGTCTTAGGTTTA 59.965 50.000 9.49 0.00 40.83 2.01
2166 8680 3.305881 GCCGCCTATCGTCTTAGGTTTAT 60.306 47.826 9.49 0.00 40.83 1.40
2167 8681 4.082571 GCCGCCTATCGTCTTAGGTTTATA 60.083 45.833 9.49 0.00 40.83 0.98
2168 8682 5.565439 GCCGCCTATCGTCTTAGGTTTATAA 60.565 44.000 9.49 0.00 40.83 0.98
2169 8683 6.091437 CCGCCTATCGTCTTAGGTTTATAAG 58.909 44.000 9.49 0.00 40.83 1.73
2170 8684 5.572126 CGCCTATCGTCTTAGGTTTATAAGC 59.428 44.000 9.49 0.00 40.83 3.09
2171 8685 6.453092 GCCTATCGTCTTAGGTTTATAAGCA 58.547 40.000 1.55 0.00 40.83 3.91
2172 8686 6.365518 GCCTATCGTCTTAGGTTTATAAGCAC 59.634 42.308 1.55 0.00 40.83 4.40
2173 8687 6.867293 CCTATCGTCTTAGGTTTATAAGCACC 59.133 42.308 1.55 0.10 35.06 5.01
2174 8688 4.675510 TCGTCTTAGGTTTATAAGCACCG 58.324 43.478 1.55 0.00 38.21 4.94
2175 8689 4.158394 TCGTCTTAGGTTTATAAGCACCGT 59.842 41.667 1.55 0.00 38.21 4.83
2176 8690 4.501921 CGTCTTAGGTTTATAAGCACCGTC 59.498 45.833 1.55 0.00 38.21 4.79
2177 8691 4.501921 GTCTTAGGTTTATAAGCACCGTCG 59.498 45.833 1.55 0.00 38.21 5.12
2178 8692 1.648504 AGGTTTATAAGCACCGTCGC 58.351 50.000 1.55 0.00 38.21 5.19
2179 8693 1.206371 AGGTTTATAAGCACCGTCGCT 59.794 47.619 1.55 0.00 46.67 4.93
2185 8699 2.186903 AGCACCGTCGCTTATGGG 59.813 61.111 0.00 0.00 39.99 4.00
2186 8700 2.185867 GCACCGTCGCTTATGGGA 59.814 61.111 0.00 0.00 38.76 4.37
2239 8754 1.340248 AGAACTCGACCTTCTTGCGAA 59.660 47.619 0.00 0.00 33.26 4.70
2276 8791 0.748005 ATTCATTCGGTTGAGGCCCG 60.748 55.000 0.00 0.00 46.83 6.13
2283 8798 1.819632 GGTTGAGGCCCGTATGCAG 60.820 63.158 0.00 0.00 0.00 4.41
2299 8814 1.446792 CAGTACTGCGACCTGCTGG 60.447 63.158 10.54 8.29 45.96 4.85
2301 8816 2.997315 TACTGCGACCTGCTGGCT 60.997 61.111 9.95 0.00 45.96 4.75
2322 8837 6.477360 TGGCTATTTTTCTTTTCGGTTGTTTC 59.523 34.615 0.00 0.00 0.00 2.78
2349 8864 8.087982 TCAGTCGGATATCATTTTATTTCAGC 57.912 34.615 4.83 0.00 0.00 4.26
2353 8868 6.998074 TCGGATATCATTTTATTTCAGCCAGT 59.002 34.615 4.83 0.00 0.00 4.00
2433 8950 7.983484 AGTTTGTCATTTTCAAAGAAAGCTCAT 59.017 29.630 0.00 0.00 35.83 2.90
2437 8954 7.980662 TGTCATTTTCAAAGAAAGCTCATGAAA 59.019 29.630 0.00 0.00 37.73 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.805267 GAGCATCTCCAGCCGTTG 58.195 61.111 0.00 0.00 0.00 4.10
51 52 0.179056 CACTGTTGTCGTTGGACCCT 60.179 55.000 0.00 0.00 42.73 4.34
59 60 1.822186 GGGCCAACACTGTTGTCGT 60.822 57.895 18.53 0.00 33.55 4.34
76 77 2.299297 ACCTCTTGGAAGTGAACTACGG 59.701 50.000 0.00 0.00 37.04 4.02
77 78 3.662247 ACCTCTTGGAAGTGAACTACG 57.338 47.619 0.00 0.00 37.04 3.51
80 81 3.910627 ACCATACCTCTTGGAAGTGAACT 59.089 43.478 0.00 0.00 37.69 3.01
89 90 4.582656 TGTTTCAACAACCATACCTCTTGG 59.417 41.667 0.00 0.00 35.67 3.61
215 216 1.465777 TGCACATGATTTCACGAGCTG 59.534 47.619 0.00 0.00 0.00 4.24
221 222 5.946298 TCTGATCTTTGCACATGATTTCAC 58.054 37.500 0.00 0.00 0.00 3.18
367 375 8.946085 ACACACATATTCGACATAATTTCAACT 58.054 29.630 0.00 0.00 0.00 3.16
402 414 6.105397 ACTTCAAATCTAACCGAGTAACCA 57.895 37.500 0.00 0.00 0.00 3.67
408 420 7.863375 CCTACTCATACTTCAAATCTAACCGAG 59.137 40.741 0.00 0.00 0.00 4.63
409 421 7.558807 TCCTACTCATACTTCAAATCTAACCGA 59.441 37.037 0.00 0.00 0.00 4.69
431 462 9.166173 CATCTTTCAACTCAAACACATATCCTA 57.834 33.333 0.00 0.00 0.00 2.94
477 508 0.527565 CGCTACCCTGCAATGCTTTT 59.472 50.000 6.82 0.00 0.00 2.27
484 515 4.076394 AGTTTATTTTCGCTACCCTGCAA 58.924 39.130 0.00 0.00 0.00 4.08
528 559 4.130118 GACTTGTTCCAGATCTTGTGTGT 58.870 43.478 0.00 0.00 0.00 3.72
529 560 4.129380 TGACTTGTTCCAGATCTTGTGTG 58.871 43.478 0.00 0.00 0.00 3.82
530 561 4.422073 TGACTTGTTCCAGATCTTGTGT 57.578 40.909 0.00 0.00 0.00 3.72
531 562 4.155462 CCATGACTTGTTCCAGATCTTGTG 59.845 45.833 0.00 0.00 0.00 3.33
532 563 4.330250 CCATGACTTGTTCCAGATCTTGT 58.670 43.478 0.00 0.00 0.00 3.16
533 564 3.128242 GCCATGACTTGTTCCAGATCTTG 59.872 47.826 0.00 0.00 0.00 3.02
534 565 3.009916 AGCCATGACTTGTTCCAGATCTT 59.990 43.478 0.00 0.00 0.00 2.40
536 567 2.941720 GAGCCATGACTTGTTCCAGATC 59.058 50.000 0.00 0.00 0.00 2.75
537 568 2.306805 TGAGCCATGACTTGTTCCAGAT 59.693 45.455 0.00 0.00 0.00 2.90
538 569 1.699083 TGAGCCATGACTTGTTCCAGA 59.301 47.619 0.00 0.00 0.00 3.86
547 578 1.611419 CACCCCATGAGCCATGACT 59.389 57.895 14.52 0.00 43.81 3.41
552 583 2.859525 GATTGCCACCCCATGAGCCA 62.860 60.000 0.00 0.00 0.00 4.75
553 584 2.042639 ATTGCCACCCCATGAGCC 60.043 61.111 0.00 0.00 0.00 4.70
554 585 2.484062 CGATTGCCACCCCATGAGC 61.484 63.158 0.00 0.00 0.00 4.26
555 586 0.816825 CTCGATTGCCACCCCATGAG 60.817 60.000 0.00 0.00 0.00 2.90
556 587 1.224315 CTCGATTGCCACCCCATGA 59.776 57.895 0.00 0.00 0.00 3.07
557 588 2.484062 GCTCGATTGCCACCCCATG 61.484 63.158 0.00 0.00 0.00 3.66
558 589 1.344953 TAGCTCGATTGCCACCCCAT 61.345 55.000 0.00 0.00 0.00 4.00
617 648 3.433343 TGGACTCGTGTACTAAATCCCA 58.567 45.455 0.93 0.00 0.00 4.37
618 649 4.667519 ATGGACTCGTGTACTAAATCCC 57.332 45.455 0.93 0.00 0.00 3.85
648 686 3.447918 AACATGAGTTACGTATCCGGG 57.552 47.619 0.00 0.00 35.85 5.73
654 692 3.936453 GCCCATCAAACATGAGTTACGTA 59.064 43.478 0.00 0.00 36.84 3.57
656 694 2.223021 CGCCCATCAAACATGAGTTACG 60.223 50.000 0.00 0.00 36.84 3.18
723 764 2.028404 GGGTTTACGCGTGATTAGTTCG 59.972 50.000 24.59 0.00 0.00 3.95
770 811 1.333258 GCACAACGTCAGCTGACTTTC 60.333 52.381 36.78 21.73 42.66 2.62
866 929 5.081032 AGTAGTATTGCTCTGGTCCCTATC 58.919 45.833 0.00 0.00 0.00 2.08
867 930 5.081032 GAGTAGTATTGCTCTGGTCCCTAT 58.919 45.833 0.00 0.00 33.72 2.57
868 931 4.471548 GAGTAGTATTGCTCTGGTCCCTA 58.528 47.826 0.00 0.00 33.72 3.53
869 932 3.301274 GAGTAGTATTGCTCTGGTCCCT 58.699 50.000 0.00 0.00 33.72 4.20
870 933 2.365941 GGAGTAGTATTGCTCTGGTCCC 59.634 54.545 3.48 0.00 36.42 4.46
884 947 0.981277 CGTGGGAATGGGGGAGTAGT 60.981 60.000 0.00 0.00 0.00 2.73
885 948 1.696097 CCGTGGGAATGGGGGAGTAG 61.696 65.000 0.00 0.00 0.00 2.57
886 949 1.691337 CCGTGGGAATGGGGGAGTA 60.691 63.158 0.00 0.00 0.00 2.59
887 950 3.015145 CCGTGGGAATGGGGGAGT 61.015 66.667 0.00 0.00 0.00 3.85
888 951 3.809013 CCCGTGGGAATGGGGGAG 61.809 72.222 0.00 0.00 42.59 4.30
889 952 4.356561 TCCCGTGGGAATGGGGGA 62.357 66.667 4.80 0.00 46.31 4.81
951 1023 3.044305 GTGCGCGCCTCTCTGTTT 61.044 61.111 30.77 0.00 0.00 2.83
1008 1089 2.063979 CATGGGGTACTCGGCTCCA 61.064 63.158 0.00 0.00 0.00 3.86
1389 5407 1.777878 TCCGCTATCTTCCTCTCCTCT 59.222 52.381 0.00 0.00 0.00 3.69
1461 5479 3.768922 AGCTCACTCGGGCTCTGC 61.769 66.667 0.00 0.00 32.98 4.26
1463 5481 3.073735 CCAGCTCACTCGGGCTCT 61.074 66.667 0.00 0.00 36.59 4.09
1480 5498 2.882137 AGCTACTAGTGCTACTGCTAGC 59.118 50.000 8.10 8.10 45.19 3.42
1525 5543 3.763897 AGACCTTCCATGTAAATTGCACC 59.236 43.478 0.00 0.00 0.00 5.01
1570 5599 2.076863 CCCCGCAGAAGAAAACTACAG 58.923 52.381 0.00 0.00 0.00 2.74
1581 5610 1.377202 GCACAAGATCCCCGCAGAA 60.377 57.895 0.00 0.00 0.00 3.02
1617 5646 9.221775 GAATAATCGCCACAGTGTAAAATTTAG 57.778 33.333 0.00 0.00 0.00 1.85
1774 5809 2.733026 GCATCCACAATCACTTGCAAAC 59.267 45.455 0.00 0.00 35.69 2.93
1794 5829 1.062587 GTTGTCGTGTATGCATCCAGC 59.937 52.381 0.19 0.00 45.96 4.85
1795 5830 1.665679 GGTTGTCGTGTATGCATCCAG 59.334 52.381 0.19 0.00 0.00 3.86
1796 5831 1.002544 TGGTTGTCGTGTATGCATCCA 59.997 47.619 0.19 0.00 31.76 3.41
1797 5832 1.732941 TGGTTGTCGTGTATGCATCC 58.267 50.000 0.19 0.00 0.00 3.51
1798 5833 4.749598 TCATATGGTTGTCGTGTATGCATC 59.250 41.667 0.19 0.00 0.00 3.91
1799 5834 4.702831 TCATATGGTTGTCGTGTATGCAT 58.297 39.130 3.79 3.79 0.00 3.96
1820 5855 9.859427 CCATCTGTTAGAAATCTCTCTCATATC 57.141 37.037 0.00 0.00 32.70 1.63
1861 5896 1.867363 TAGAGTGAGCCCTCTTTCCC 58.133 55.000 3.77 0.00 41.89 3.97
1862 5897 3.491792 CGAATAGAGTGAGCCCTCTTTCC 60.492 52.174 3.77 0.00 41.89 3.13
1868 8382 3.567397 ACATACGAATAGAGTGAGCCCT 58.433 45.455 0.00 0.00 0.00 5.19
1870 8384 6.092259 ACAAAAACATACGAATAGAGTGAGCC 59.908 38.462 0.00 0.00 0.00 4.70
1919 8433 5.415701 GCACTTTGAGGTCCTATTTGATTCA 59.584 40.000 0.00 0.00 0.00 2.57
2097 8611 4.415150 ACCAGCCGGCTCACCATG 62.415 66.667 30.29 15.75 34.57 3.66
2098 8612 4.101448 GACCAGCCGGCTCACCAT 62.101 66.667 30.29 10.37 34.57 3.55
2100 8614 2.370647 GATAGACCAGCCGGCTCACC 62.371 65.000 30.29 18.05 34.57 4.02
2101 8615 1.068250 GATAGACCAGCCGGCTCAC 59.932 63.158 30.29 20.32 34.57 3.51
2102 8616 0.975556 TTGATAGACCAGCCGGCTCA 60.976 55.000 30.29 17.75 34.57 4.26
2103 8617 0.249657 CTTGATAGACCAGCCGGCTC 60.250 60.000 30.29 17.01 34.57 4.70
2104 8618 1.826024 CTTGATAGACCAGCCGGCT 59.174 57.895 27.08 27.08 34.57 5.52
2105 8619 1.889573 GCTTGATAGACCAGCCGGC 60.890 63.158 21.89 21.89 34.57 6.13
2106 8620 1.227674 GGCTTGATAGACCAGCCGG 60.228 63.158 0.00 0.00 35.86 6.13
2107 8621 4.445699 GGCTTGATAGACCAGCCG 57.554 61.111 0.00 0.00 35.86 5.52
2108 8622 1.227674 CCGGCTTGATAGACCAGCC 60.228 63.158 0.00 0.00 41.84 4.85
2109 8623 0.107654 AACCGGCTTGATAGACCAGC 60.108 55.000 0.00 0.00 0.00 4.85
2110 8624 2.431057 ACTAACCGGCTTGATAGACCAG 59.569 50.000 0.00 0.00 0.00 4.00
2111 8625 2.167693 CACTAACCGGCTTGATAGACCA 59.832 50.000 0.00 0.00 0.00 4.02
2112 8626 2.822764 CACTAACCGGCTTGATAGACC 58.177 52.381 0.00 0.00 0.00 3.85
2113 8627 2.159085 AGCACTAACCGGCTTGATAGAC 60.159 50.000 0.00 0.00 36.92 2.59
2114 8628 2.108168 AGCACTAACCGGCTTGATAGA 58.892 47.619 0.00 0.00 36.92 1.98
2115 8629 2.604046 AGCACTAACCGGCTTGATAG 57.396 50.000 0.00 0.00 36.92 2.08
2116 8630 4.682778 ATTAGCACTAACCGGCTTGATA 57.317 40.909 0.00 0.00 41.41 2.15
2117 8631 3.560636 ATTAGCACTAACCGGCTTGAT 57.439 42.857 0.00 0.00 41.41 2.57
2118 8632 3.343941 AATTAGCACTAACCGGCTTGA 57.656 42.857 0.00 0.00 41.41 3.02
2119 8633 4.393680 TGTTAATTAGCACTAACCGGCTTG 59.606 41.667 0.00 0.00 41.41 4.01
2120 8634 4.393990 GTGTTAATTAGCACTAACCGGCTT 59.606 41.667 21.26 0.00 41.41 4.35
2121 8635 3.937079 GTGTTAATTAGCACTAACCGGCT 59.063 43.478 21.26 0.00 43.94 5.52
2122 8636 3.242188 CGTGTTAATTAGCACTAACCGGC 60.242 47.826 24.33 2.52 35.59 6.13
2123 8637 3.242188 GCGTGTTAATTAGCACTAACCGG 60.242 47.826 24.33 0.00 35.59 5.28
2124 8638 3.242188 GGCGTGTTAATTAGCACTAACCG 60.242 47.826 24.33 14.94 35.59 4.44
2125 8639 3.242188 CGGCGTGTTAATTAGCACTAACC 60.242 47.826 24.33 20.88 35.59 2.85
2126 8640 3.783223 GCGGCGTGTTAATTAGCACTAAC 60.783 47.826 24.33 15.69 35.59 2.34
2127 8641 2.349275 GCGGCGTGTTAATTAGCACTAA 59.651 45.455 24.33 0.00 35.59 2.24
2128 8642 1.928503 GCGGCGTGTTAATTAGCACTA 59.071 47.619 24.33 0.00 35.59 2.74
2129 8643 0.725117 GCGGCGTGTTAATTAGCACT 59.275 50.000 24.33 0.00 35.59 4.40
2130 8644 0.247934 GGCGGCGTGTTAATTAGCAC 60.248 55.000 19.30 19.30 34.59 4.40
2131 8645 0.391927 AGGCGGCGTGTTAATTAGCA 60.392 50.000 9.37 0.00 0.00 3.49
2132 8646 1.574134 TAGGCGGCGTGTTAATTAGC 58.426 50.000 9.37 0.00 0.00 3.09
2133 8647 2.407361 CGATAGGCGGCGTGTTAATTAG 59.593 50.000 9.37 0.00 36.03 1.73
2134 8648 2.223782 ACGATAGGCGGCGTGTTAATTA 60.224 45.455 9.37 0.00 46.49 1.40
2135 8649 1.214367 CGATAGGCGGCGTGTTAATT 58.786 50.000 9.37 0.00 36.03 1.40
2136 8650 0.103572 ACGATAGGCGGCGTGTTAAT 59.896 50.000 9.37 0.00 46.49 1.40
2137 8651 0.526096 GACGATAGGCGGCGTGTTAA 60.526 55.000 9.37 0.00 46.49 2.01
2138 8652 1.064621 GACGATAGGCGGCGTGTTA 59.935 57.895 9.37 0.00 46.49 2.41
2139 8653 2.202703 GACGATAGGCGGCGTGTT 60.203 61.111 9.37 0.00 46.49 3.32
2147 8661 8.475749 GGTGCTTATAAACCTAAGACGATAGGC 61.476 44.444 11.74 0.00 45.37 3.93
2148 8662 6.867293 GGTGCTTATAAACCTAAGACGATAGG 59.133 42.308 10.68 10.68 46.62 2.57
2149 8663 6.581542 CGGTGCTTATAAACCTAAGACGATAG 59.418 42.308 5.09 0.00 36.77 2.08
2150 8664 6.039717 ACGGTGCTTATAAACCTAAGACGATA 59.960 38.462 5.09 0.00 34.06 2.92
2151 8665 5.163478 ACGGTGCTTATAAACCTAAGACGAT 60.163 40.000 5.09 0.00 34.06 3.73
2152 8666 4.158394 ACGGTGCTTATAAACCTAAGACGA 59.842 41.667 5.09 0.00 34.06 4.20
2153 8667 4.427312 ACGGTGCTTATAAACCTAAGACG 58.573 43.478 5.09 0.00 34.06 4.18
2154 8668 4.501921 CGACGGTGCTTATAAACCTAAGAC 59.498 45.833 5.09 0.00 34.06 3.01
2155 8669 4.675510 CGACGGTGCTTATAAACCTAAGA 58.324 43.478 5.09 0.00 34.06 2.10
2156 8670 3.244579 GCGACGGTGCTTATAAACCTAAG 59.755 47.826 0.00 0.00 34.06 2.18
2157 8671 3.119029 AGCGACGGTGCTTATAAACCTAA 60.119 43.478 0.00 0.00 44.46 2.69
2158 8672 2.428171 AGCGACGGTGCTTATAAACCTA 59.572 45.455 0.00 0.00 44.46 3.08
2159 8673 1.206371 AGCGACGGTGCTTATAAACCT 59.794 47.619 0.00 0.00 44.46 3.50
2160 8674 1.648504 AGCGACGGTGCTTATAAACC 58.351 50.000 0.00 0.00 44.46 3.27
2169 8683 2.171725 GTCCCATAAGCGACGGTGC 61.172 63.158 0.00 0.00 0.00 5.01
2170 8684 0.806102 CAGTCCCATAAGCGACGGTG 60.806 60.000 0.00 0.00 34.10 4.94
2171 8685 1.515954 CAGTCCCATAAGCGACGGT 59.484 57.895 0.00 0.00 34.10 4.83
2172 8686 1.883084 GCAGTCCCATAAGCGACGG 60.883 63.158 0.00 0.00 34.10 4.79
2173 8687 1.883084 GGCAGTCCCATAAGCGACG 60.883 63.158 0.00 0.00 34.10 5.12
2174 8688 1.220749 TGGCAGTCCCATAAGCGAC 59.779 57.895 0.00 0.00 39.18 5.19
2175 8689 3.720494 TGGCAGTCCCATAAGCGA 58.280 55.556 0.00 0.00 39.18 4.93
2183 8697 3.643792 ACTAGACAGAATATGGCAGTCCC 59.356 47.826 0.00 0.00 40.68 4.46
2184 8698 4.342378 TGACTAGACAGAATATGGCAGTCC 59.658 45.833 9.58 0.00 41.05 3.85
2185 8699 5.068460 ACTGACTAGACAGAATATGGCAGTC 59.932 44.000 25.68 6.43 40.68 3.51
2186 8700 4.959210 ACTGACTAGACAGAATATGGCAGT 59.041 41.667 25.68 1.65 40.68 4.40
2187 8701 5.301551 AGACTGACTAGACAGAATATGGCAG 59.698 44.000 25.68 1.00 40.68 4.85
2188 8702 5.204292 AGACTGACTAGACAGAATATGGCA 58.796 41.667 25.68 0.00 40.68 4.92
2189 8703 5.782893 AGACTGACTAGACAGAATATGGC 57.217 43.478 25.68 2.19 40.63 4.40
2190 8704 8.303156 CCATAAGACTGACTAGACAGAATATGG 58.697 40.741 27.65 27.65 40.26 2.74
2191 8705 8.855110 ACCATAAGACTGACTAGACAGAATATG 58.145 37.037 25.68 23.79 40.63 1.78
2251 8766 1.133025 CTCAACCGAATGAATGCCACC 59.867 52.381 0.00 0.00 0.00 4.61
2256 8771 0.740737 GGGCCTCAACCGAATGAATG 59.259 55.000 0.84 0.00 0.00 2.67
2283 8798 1.945354 TAGCCAGCAGGTCGCAGTAC 61.945 60.000 0.00 0.00 46.13 2.73
2290 8805 4.790765 AAAGAAAAATAGCCAGCAGGTC 57.209 40.909 0.00 0.00 37.19 3.85
2299 8814 7.694388 AGAAACAACCGAAAAGAAAAATAGC 57.306 32.000 0.00 0.00 0.00 2.97
2301 8816 9.296400 CTGAAGAAACAACCGAAAAGAAAAATA 57.704 29.630 0.00 0.00 0.00 1.40
2403 8920 9.853921 GCTTTCTTTGAAAATGACAAACTATTG 57.146 29.630 0.00 0.00 42.46 1.90
2413 8930 8.199449 AGTTTCATGAGCTTTCTTTGAAAATGA 58.801 29.630 0.00 0.00 36.93 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.