Multiple sequence alignment - TraesCS6B01G178600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G178600 chr6B 100.000 4949 0 0 1 4949 198913864 198918812 0.000000e+00 9140.0
1 TraesCS6B01G178600 chr6B 89.015 528 48 7 1 521 9021512 9020988 0.000000e+00 645.0
2 TraesCS6B01G178600 chr6D 94.088 3569 154 20 776 4319 110153392 110156928 0.000000e+00 5369.0
3 TraesCS6B01G178600 chr6D 95.210 167 7 1 4353 4518 32865335 32865169 3.800000e-66 263.0
4 TraesCS6B01G178600 chr6D 94.675 169 9 0 4352 4520 83202589 83202757 3.800000e-66 263.0
5 TraesCS6B01G178600 chr6D 94.706 170 8 1 4353 4522 97856419 97856587 3.800000e-66 263.0
6 TraesCS6B01G178600 chr6D 94.186 172 10 0 4351 4522 392896972 392897143 3.800000e-66 263.0
7 TraesCS6B01G178600 chr6D 95.152 165 8 0 4354 4518 8096562 8096726 1.370000e-65 261.0
8 TraesCS6B01G178600 chr6D 94.675 169 8 1 4354 4522 389700541 389700708 1.370000e-65 261.0
9 TraesCS6B01G178600 chr6D 95.152 165 8 0 4354 4518 466521185 466521349 1.370000e-65 261.0
10 TraesCS6B01G178600 chr6D 94.152 171 9 1 4352 4522 271602772 271602941 4.910000e-65 259.0
11 TraesCS6B01G178600 chr6D 94.118 170 10 0 4353 4522 406391358 406391527 4.910000e-65 259.0
12 TraesCS6B01G178600 chr6D 91.758 182 14 1 4339 4519 471239030 471238849 8.220000e-63 252.0
13 TraesCS6B01G178600 chr6D 85.714 98 6 1 4854 4943 110158392 110158489 4.080000e-16 97.1
14 TraesCS6B01G178600 chr6A 93.179 3577 164 36 783 4319 134544344 134547880 0.000000e+00 5180.0
15 TraesCS6B01G178600 chr6A 82.522 801 102 23 1 773 559136340 559135550 0.000000e+00 669.0
16 TraesCS6B01G178600 chr5B 85.697 804 77 16 1 773 533766222 533767018 0.000000e+00 813.0
17 TraesCS6B01G178600 chr5B 92.350 183 12 2 4354 4535 6397055 6397236 4.910000e-65 259.0
18 TraesCS6B01G178600 chr5B 90.206 194 17 2 4327 4519 101540308 101540500 8.220000e-63 252.0
19 TraesCS6B01G178600 chr1B 84.987 786 96 10 1 773 688401990 688402766 0.000000e+00 778.0
20 TraesCS6B01G178600 chr1B 94.798 173 9 0 4350 4522 476874739 476874911 2.270000e-68 270.0
21 TraesCS6B01G178600 chr7B 90.857 525 40 7 1 519 739346977 739346455 0.000000e+00 697.0
22 TraesCS6B01G178600 chr7B 89.847 522 42 8 1 518 586654748 586655262 0.000000e+00 660.0
23 TraesCS6B01G178600 chr7D 82.992 782 106 20 1 773 613866849 613867612 0.000000e+00 682.0
24 TraesCS6B01G178600 chr7D 83.469 738 81 21 66 773 616425780 616425054 0.000000e+00 649.0
25 TraesCS6B01G178600 chr7D 94.286 175 9 1 4349 4522 513817907 513817733 2.940000e-67 267.0
26 TraesCS6B01G178600 chr3B 89.734 526 43 9 1 521 19740904 19741423 0.000000e+00 662.0
27 TraesCS6B01G178600 chr3B 94.828 174 9 0 4345 4518 571752516 571752689 6.310000e-69 272.0
28 TraesCS6B01G178600 chr2B 84.389 679 75 15 123 773 21865598 21866273 5.400000e-179 638.0
29 TraesCS6B01G178600 chr2B 84.775 578 75 8 141 718 723047131 723047695 7.190000e-158 568.0
30 TraesCS6B01G178600 chr2B 95.833 168 7 0 4353 4520 719520670 719520503 6.310000e-69 272.0
31 TraesCS6B01G178600 chr4A 81.491 805 103 26 1 773 680366870 680367660 1.960000e-173 619.0
32 TraesCS6B01G178600 chr4D 82.982 711 76 23 1 692 486797240 486797924 7.090000e-168 601.0
33 TraesCS6B01G178600 chr4D 84.694 588 75 15 201 782 434096311 434095733 1.550000e-159 573.0
34 TraesCS6B01G178600 chr4D 92.105 190 12 3 4332 4518 477898770 477898959 1.060000e-66 265.0
35 TraesCS6B01G178600 chr4D 94.706 170 8 1 4349 4518 93338038 93338206 3.800000e-66 263.0
36 TraesCS6B01G178600 chr4D 93.750 176 9 2 4343 4518 404108569 404108742 3.800000e-66 263.0
37 TraesCS6B01G178600 chr4D 93.750 176 9 2 4343 4518 417622632 417622459 3.800000e-66 263.0
38 TraesCS6B01G178600 chr2D 83.536 577 81 12 200 773 55923775 55924340 1.220000e-145 527.0
39 TraesCS6B01G178600 chr2D 91.979 187 13 2 4354 4539 309971583 309971398 1.370000e-65 261.0
40 TraesCS6B01G178600 chr1A 95.833 168 7 0 4354 4521 247344626 247344793 6.310000e-69 272.0
41 TraesCS6B01G178600 chr1D 95.758 165 7 0 4354 4518 52360451 52360287 2.940000e-67 267.0
42 TraesCS6B01G178600 chr1D 95.266 169 7 1 4350 4518 206955704 206955537 2.940000e-67 267.0
43 TraesCS6B01G178600 chr1D 94.737 171 8 1 4350 4520 178466473 178466304 1.060000e-66 265.0
44 TraesCS6B01G178600 chr1D 94.675 169 9 0 4354 4522 238940380 238940212 3.800000e-66 263.0
45 TraesCS6B01G178600 chr3D 94.253 174 9 1 4349 4522 360695824 360695996 1.060000e-66 265.0
46 TraesCS6B01G178600 chr3D 92.896 183 9 2 4343 4522 302933501 302933682 3.800000e-66 263.0
47 TraesCS6B01G178600 chr5D 92.473 186 11 2 4336 4519 517310667 517310483 3.800000e-66 263.0
48 TraesCS6B01G178600 chrUn 94.048 168 10 0 4352 4519 358753913 358754080 6.360000e-64 255.0
49 TraesCS6B01G178600 chrUn 92.941 170 11 1 4353 4522 25754364 25754532 3.830000e-61 246.0
50 TraesCS6B01G178600 chrUn 92.045 176 13 1 4347 4522 159611251 159611425 3.830000e-61 246.0
51 TraesCS6B01G178600 chrUn 93.333 165 11 0 4354 4518 46186604 46186768 1.380000e-60 244.0
52 TraesCS6B01G178600 chrUn 93.333 165 11 0 4354 4518 74119615 74119451 1.380000e-60 244.0
53 TraesCS6B01G178600 chrUn 92.899 169 11 1 4354 4522 94826543 94826376 1.380000e-60 244.0
54 TraesCS6B01G178600 chrUn 93.333 165 11 0 4354 4518 99868846 99869010 1.380000e-60 244.0
55 TraesCS6B01G178600 chrUn 93.333 165 10 1 4354 4518 50991762 50991925 4.950000e-60 243.0
56 TraesCS6B01G178600 chrUn 91.954 174 12 2 4349 4522 115400725 115400896 4.950000e-60 243.0
57 TraesCS6B01G178600 chrUn 92.353 170 12 1 4353 4522 223282633 223282801 1.780000e-59 241.0
58 TraesCS6B01G178600 chrUn 91.477 176 12 3 4349 4522 173546530 173546704 6.400000e-59 239.0
59 TraesCS6B01G178600 chrUn 91.477 176 12 3 4349 4522 408256147 408256321 6.400000e-59 239.0
60 TraesCS6B01G178600 chrUn 90.164 183 14 4 4350 4530 362727808 362727628 8.280000e-58 235.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G178600 chr6B 198913864 198918812 4948 False 9140.00 9140 100.000 1 4949 1 chr6B.!!$F1 4948
1 TraesCS6B01G178600 chr6B 9020988 9021512 524 True 645.00 645 89.015 1 521 1 chr6B.!!$R1 520
2 TraesCS6B01G178600 chr6D 110153392 110158489 5097 False 2733.05 5369 89.901 776 4943 2 chr6D.!!$F9 4167
3 TraesCS6B01G178600 chr6A 134544344 134547880 3536 False 5180.00 5180 93.179 783 4319 1 chr6A.!!$F1 3536
4 TraesCS6B01G178600 chr6A 559135550 559136340 790 True 669.00 669 82.522 1 773 1 chr6A.!!$R1 772
5 TraesCS6B01G178600 chr5B 533766222 533767018 796 False 813.00 813 85.697 1 773 1 chr5B.!!$F3 772
6 TraesCS6B01G178600 chr1B 688401990 688402766 776 False 778.00 778 84.987 1 773 1 chr1B.!!$F2 772
7 TraesCS6B01G178600 chr7B 739346455 739346977 522 True 697.00 697 90.857 1 519 1 chr7B.!!$R1 518
8 TraesCS6B01G178600 chr7B 586654748 586655262 514 False 660.00 660 89.847 1 518 1 chr7B.!!$F1 517
9 TraesCS6B01G178600 chr7D 613866849 613867612 763 False 682.00 682 82.992 1 773 1 chr7D.!!$F1 772
10 TraesCS6B01G178600 chr7D 616425054 616425780 726 True 649.00 649 83.469 66 773 1 chr7D.!!$R2 707
11 TraesCS6B01G178600 chr3B 19740904 19741423 519 False 662.00 662 89.734 1 521 1 chr3B.!!$F1 520
12 TraesCS6B01G178600 chr2B 21865598 21866273 675 False 638.00 638 84.389 123 773 1 chr2B.!!$F1 650
13 TraesCS6B01G178600 chr2B 723047131 723047695 564 False 568.00 568 84.775 141 718 1 chr2B.!!$F2 577
14 TraesCS6B01G178600 chr4A 680366870 680367660 790 False 619.00 619 81.491 1 773 1 chr4A.!!$F1 772
15 TraesCS6B01G178600 chr4D 486797240 486797924 684 False 601.00 601 82.982 1 692 1 chr4D.!!$F4 691
16 TraesCS6B01G178600 chr4D 434095733 434096311 578 True 573.00 573 84.694 201 782 1 chr4D.!!$R2 581
17 TraesCS6B01G178600 chr2D 55923775 55924340 565 False 527.00 527 83.536 200 773 1 chr2D.!!$F1 573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
797 1094 0.097499 TGTCACGTCGTGCCGTATAG 59.903 55.000 20.56 0.0 39.45 1.31 F
1044 1347 1.222387 CCTCGACCTCTCCGACTCT 59.778 63.158 0.00 0.0 32.18 3.24 F
1995 2304 0.882484 TTCTGATGCGTGCCGAAACA 60.882 50.000 0.00 0.0 0.00 2.83 F
2349 2658 0.107508 CATCAACTGGCGATGGGTCT 60.108 55.000 0.00 0.0 37.25 3.85 F
2931 3254 0.108186 CACACAGGGCGCTAGATTCA 60.108 55.000 7.64 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1749 2058 0.034089 TCAGAGGTCTCAGCATCGGA 60.034 55.000 0.55 0.0 0.00 4.55 R
2259 2568 0.035056 CCAACACTGGGGACTCCATC 60.035 60.000 0.00 0.0 46.01 3.51 R
2908 3231 0.323087 TCTAGCGCCCTGTGTGACTA 60.323 55.000 2.29 0.0 0.00 2.59 R
3597 3930 1.001181 ACATTGTTCATTGTGGGCAGC 59.999 47.619 0.52 0.0 0.00 5.25 R
4767 5961 0.109153 TGAGTTCACACTGGCATGCT 59.891 50.000 18.92 0.0 31.22 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
151 264 0.944311 GGTTGTGCTTTCGCGAGAGA 60.944 55.000 28.81 12.02 43.69 3.10
221 338 2.126463 CTTTCGCGAGAGGCACGA 60.126 61.111 18.35 0.00 43.84 4.35
337 575 1.666553 CGCAAGAGGCACGGTTGTA 60.667 57.895 0.00 0.00 45.17 2.41
439 687 0.949105 GGTTTTGCTTCCGCGAGAGA 60.949 55.000 8.23 0.00 39.65 3.10
481 733 3.936203 ACGGGCGTGCCTCTTTCA 61.936 61.111 11.25 0.00 36.10 2.69
493 748 3.891366 TGCCTCTTTCAGAAAGGGAAAAG 59.109 43.478 22.65 11.87 41.66 2.27
568 861 9.347240 CTATCAACATGGGATCTAGTTTTGAAT 57.653 33.333 5.52 0.00 0.00 2.57
594 891 0.249120 ATGCGAGGAATCCAACGACA 59.751 50.000 19.24 16.11 0.00 4.35
607 904 2.349060 CCAACGACAAAAGCGATTCGAA 60.349 45.455 10.88 0.00 35.45 3.71
630 927 0.320073 TGGACGCACGGTTTAAGAGG 60.320 55.000 0.00 0.00 0.00 3.69
692 989 2.092968 ACTCTCAGGTTGCAACAAGTGA 60.093 45.455 29.55 24.45 0.00 3.41
718 1015 3.767230 CAGCGCGTCACTTGTCGG 61.767 66.667 8.43 0.00 0.00 4.79
730 1027 5.404366 CGTCACTTGTCGGAATCTAGAAAAA 59.596 40.000 0.00 0.00 0.00 1.94
786 1083 3.074412 AGTGATTTTGGGATGTCACGTC 58.926 45.455 0.00 0.00 44.20 4.34
791 1088 2.813908 GGGATGTCACGTCGTGCC 60.814 66.667 20.56 14.88 32.98 5.01
797 1094 0.097499 TGTCACGTCGTGCCGTATAG 59.903 55.000 20.56 0.00 39.45 1.31
939 1242 5.643379 TCCTCTCCCAAATTTCAAATTCG 57.357 39.130 0.00 0.00 0.00 3.34
1044 1347 1.222387 CCTCGACCTCTCCGACTCT 59.778 63.158 0.00 0.00 32.18 3.24
1332 1641 2.432628 CGCTGGGTGAACTCCGAC 60.433 66.667 0.00 0.00 0.00 4.79
1698 2007 2.038813 TCCATCTGGGAGGACGCA 59.961 61.111 0.00 0.00 42.15 5.24
1817 2126 1.123928 GTGGAGGAGGGTGATGGTAG 58.876 60.000 0.00 0.00 0.00 3.18
1881 2190 3.433343 TGTTGGTGATTCAGGCATTCAT 58.567 40.909 0.00 0.00 0.00 2.57
1992 2301 1.005037 ACTTCTGATGCGTGCCGAA 60.005 52.632 0.00 0.00 0.00 4.30
1995 2304 0.882484 TTCTGATGCGTGCCGAAACA 60.882 50.000 0.00 0.00 0.00 2.83
2034 2343 2.180017 GCAACTGATGGCAAGCCG 59.820 61.111 6.60 0.00 39.42 5.52
2055 2364 2.283821 GCCAAGGGGGTGCATCAA 60.284 61.111 0.00 0.00 39.65 2.57
2094 2403 3.486383 GAAGGTGGTCTCACAATGGAAA 58.514 45.455 0.00 0.00 45.32 3.13
2097 2406 4.482990 AGGTGGTCTCACAATGGAAATTT 58.517 39.130 0.00 0.00 45.32 1.82
2103 2412 5.221621 GGTCTCACAATGGAAATTTGGGAAA 60.222 40.000 0.00 0.00 36.14 3.13
2126 2435 5.748402 AGATGGAGCTGACATTAACATGAA 58.252 37.500 0.00 0.00 34.11 2.57
2202 2511 2.100197 CTGGGACTAGATGACAACCGA 58.900 52.381 0.00 0.00 0.00 4.69
2229 2538 2.111384 CGGTGGGATATGAGGGATAGG 58.889 57.143 0.00 0.00 0.00 2.57
2238 2547 5.103771 GGATATGAGGGATAGGCATGGAATT 60.104 44.000 0.00 0.00 0.00 2.17
2292 2601 1.682344 GTTGGAATGGACCCAGGGC 60.682 63.158 4.91 0.00 34.77 5.19
2340 2649 0.316204 AGTGCTTTGCATCAACTGGC 59.684 50.000 0.00 0.00 41.91 4.85
2349 2658 0.107508 CATCAACTGGCGATGGGTCT 60.108 55.000 0.00 0.00 37.25 3.85
2352 2661 1.837439 TCAACTGGCGATGGGTCTATT 59.163 47.619 0.00 0.00 0.00 1.73
2364 2673 2.116238 GGGTCTATTGTGGTAGGCTCA 58.884 52.381 0.00 0.00 27.14 4.26
2370 2679 2.489938 TTGTGGTAGGCTCATTGGAC 57.510 50.000 0.00 0.00 0.00 4.02
2379 2688 1.405463 GGCTCATTGGACGGGAAAATC 59.595 52.381 0.00 0.00 0.00 2.17
2556 2865 1.488393 GATGGGAAGGAGAAGACAGGG 59.512 57.143 0.00 0.00 0.00 4.45
2616 2925 2.039405 GCTCAAGCTCAGCCCACTG 61.039 63.158 6.38 0.00 45.95 3.66
2640 2949 1.918262 TCTCATCTTGCAGGGGACAAT 59.082 47.619 0.00 0.00 0.00 2.71
2693 3002 5.394333 GGGTCAGTACATCTTACCACTTCTC 60.394 48.000 0.00 0.00 40.99 2.87
2734 3043 8.710551 TGCTCAAATTTACTTATTGTTGCATTG 58.289 29.630 0.00 0.00 33.52 2.82
2748 3057 4.202131 TGTTGCATTGCATGAAGACTTGAA 60.202 37.500 12.95 0.00 38.76 2.69
2749 3058 4.587584 TGCATTGCATGAAGACTTGAAA 57.412 36.364 7.38 0.00 31.71 2.69
2750 3059 4.552355 TGCATTGCATGAAGACTTGAAAG 58.448 39.130 7.38 0.00 31.71 2.62
2757 3080 5.012046 TGCATGAAGACTTGAAAGAGGTCTA 59.988 40.000 0.00 0.00 39.09 2.59
2762 3085 8.057536 TGAAGACTTGAAAGAGGTCTAGTATC 57.942 38.462 0.00 0.00 39.09 2.24
2765 3088 9.756571 AAGACTTGAAAGAGGTCTAGTATCTAA 57.243 33.333 0.00 0.00 39.09 2.10
2797 3120 4.661222 TGCATTTAAGTTGGGACTGATCA 58.339 39.130 0.00 0.00 35.91 2.92
2798 3121 5.076182 TGCATTTAAGTTGGGACTGATCAA 58.924 37.500 0.00 0.00 35.91 2.57
2825 3148 5.624159 TCAGATGACCAGAAGTGACATTTT 58.376 37.500 0.00 0.00 0.00 1.82
2873 3196 7.569111 ACCACTAATTTATGAGGTCTACTCCAT 59.431 37.037 0.00 0.00 46.01 3.41
2918 3241 8.827177 TCTGTATTAGGTTTTTAGTCACACAG 57.173 34.615 0.00 0.00 0.00 3.66
2921 3244 2.583143 AGGTTTTTAGTCACACAGGGC 58.417 47.619 0.00 0.00 0.00 5.19
2931 3254 0.108186 CACACAGGGCGCTAGATTCA 60.108 55.000 7.64 0.00 0.00 2.57
2950 3273 2.957680 TCAATTTTGTGGCTTCTGCTCA 59.042 40.909 0.00 0.00 39.59 4.26
3144 3467 6.312141 TGAGTCATATCACCTCCATTTTCA 57.688 37.500 0.00 0.00 0.00 2.69
3159 3482 7.065563 CCTCCATTTTCATCACTAGCATATAGC 59.934 40.741 0.00 0.00 46.19 2.97
3269 3592 6.127730 GCTACTGCAAATACCATTGTACCTTT 60.128 38.462 0.00 0.00 39.41 3.11
3270 3593 6.024552 ACTGCAAATACCATTGTACCTTTG 57.975 37.500 0.00 0.76 33.23 2.77
3277 3600 3.149196 ACCATTGTACCTTTGCTGTCTG 58.851 45.455 0.00 0.00 0.00 3.51
3342 3667 5.464057 TCAATGTTTGAGCTTCTTTTGCATG 59.536 36.000 0.00 0.00 34.08 4.06
3351 3676 5.846203 AGCTTCTTTTGCATGTTTACACAT 58.154 33.333 0.00 0.00 45.18 3.21
3386 3711 5.675684 AGGTTTCAATGTTTGTGGTCTTT 57.324 34.783 0.00 0.00 0.00 2.52
3387 3712 6.783708 AGGTTTCAATGTTTGTGGTCTTTA 57.216 33.333 0.00 0.00 0.00 1.85
3388 3713 7.360113 AGGTTTCAATGTTTGTGGTCTTTAT 57.640 32.000 0.00 0.00 0.00 1.40
3389 3714 7.433680 AGGTTTCAATGTTTGTGGTCTTTATC 58.566 34.615 0.00 0.00 0.00 1.75
3491 3816 6.176896 TCTTCGTTGATGGATAATGGTTGAA 58.823 36.000 0.00 0.00 0.00 2.69
3576 3909 0.179045 ACAATAGCCTGCACGATCCC 60.179 55.000 0.00 0.00 0.00 3.85
3580 3913 1.686325 TAGCCTGCACGATCCCCTTC 61.686 60.000 0.00 0.00 0.00 3.46
3582 3915 1.144936 CCTGCACGATCCCCTTCTC 59.855 63.158 0.00 0.00 0.00 2.87
3583 3916 1.333636 CCTGCACGATCCCCTTCTCT 61.334 60.000 0.00 0.00 0.00 3.10
3586 3919 1.688735 TGCACGATCCCCTTCTCTATG 59.311 52.381 0.00 0.00 0.00 2.23
3591 3924 3.076785 ACGATCCCCTTCTCTATGGAGAT 59.923 47.826 9.87 0.00 46.51 2.75
3597 3930 7.321717 TCCCCTTCTCTATGGAGATAATTTG 57.678 40.000 9.87 0.00 46.51 2.32
3603 3936 4.655963 TCTATGGAGATAATTTGCTGCCC 58.344 43.478 0.00 0.00 0.00 5.36
3604 3937 2.824689 TGGAGATAATTTGCTGCCCA 57.175 45.000 0.00 0.00 0.00 5.36
3607 3940 2.760092 GGAGATAATTTGCTGCCCACAA 59.240 45.455 0.00 0.00 0.00 3.33
3621 3954 2.406130 CCCACAATGAACAATGTGTGC 58.594 47.619 17.75 0.00 44.21 4.57
3622 3955 2.223994 CCCACAATGAACAATGTGTGCA 60.224 45.455 17.75 0.00 44.21 4.57
3644 3977 8.893727 GTGCATTTTTACTATCTGGTATCAAGT 58.106 33.333 0.00 0.00 0.00 3.16
3660 3993 8.910944 TGGTATCAAGTACTCAATCTAGTAACC 58.089 37.037 0.00 0.00 33.85 2.85
3772 4105 2.434359 GCCACCACGAGTGCTACC 60.434 66.667 5.04 0.00 45.83 3.18
3789 4122 2.673523 CAGAACCAGGAGGGGCTG 59.326 66.667 0.00 0.00 42.91 4.85
3795 4128 2.588989 CAGGAGGGGCTGAAGAGC 59.411 66.667 0.00 0.00 45.40 4.09
3810 4143 2.957491 AGAGCTGCTACTGCTACAAG 57.043 50.000 0.15 0.00 38.70 3.16
3855 4188 2.117156 GGCCAGTCGCTTCATGCAT 61.117 57.895 0.00 0.00 43.06 3.96
3868 4201 4.428209 CTTCATGCATGAGAAGTACGACT 58.572 43.478 27.25 0.00 38.19 4.18
3882 4215 2.659610 GACTTGAGCGACTGCCCT 59.340 61.111 0.00 0.00 44.31 5.19
3934 4267 1.374758 GTCACCTCCTTCAGCGTGG 60.375 63.158 0.00 0.00 0.00 4.94
4025 4361 4.511454 GTGCTGTCATGTAACTTCTTGACA 59.489 41.667 12.37 12.37 44.36 3.58
4050 4386 2.303022 GGATCTGGACTTCCAAGTGTGA 59.697 50.000 0.00 0.00 46.97 3.58
4094 4431 6.543465 TCATGGCTTGTTACAGGATTTATGAG 59.457 38.462 0.00 0.00 0.00 2.90
4107 4444 8.274322 ACAGGATTTATGAGTTATGTGGATTGA 58.726 33.333 0.00 0.00 0.00 2.57
4112 4449 8.621532 TTTATGAGTTATGTGGATTGATAGCC 57.378 34.615 0.00 0.00 0.00 3.93
4129 4466 7.062749 TGATAGCCAAAACTATCTTACGGAT 57.937 36.000 11.62 0.00 45.85 4.18
4167 4504 6.344500 TGGCTAGATTGATTCTGAACTTCTC 58.656 40.000 0.00 0.00 35.79 2.87
4172 4509 9.650539 CTAGATTGATTCTGAACTTCTCTGAAA 57.349 33.333 0.00 0.00 42.99 2.69
4231 4568 0.756294 TCTGTCCGTGTGTCATGGTT 59.244 50.000 7.70 0.00 41.03 3.67
4232 4569 1.148310 CTGTCCGTGTGTCATGGTTC 58.852 55.000 7.70 4.28 41.03 3.62
4233 4570 0.756294 TGTCCGTGTGTCATGGTTCT 59.244 50.000 7.70 0.00 41.03 3.01
4234 4571 1.964933 TGTCCGTGTGTCATGGTTCTA 59.035 47.619 7.70 0.00 41.03 2.10
4235 4572 2.565391 TGTCCGTGTGTCATGGTTCTAT 59.435 45.455 7.70 0.00 41.03 1.98
4241 4578 5.447683 CCGTGTGTCATGGTTCTATTTGATG 60.448 44.000 0.00 0.00 35.92 3.07
4246 4584 6.318648 GTGTCATGGTTCTATTTGATGCCTTA 59.681 38.462 0.00 0.00 0.00 2.69
4296 4635 9.352784 CATTTCTGTTGAAGTTAAACTGTTTCA 57.647 29.630 9.38 0.00 33.28 2.69
4299 4638 8.050778 TCTGTTGAAGTTAAACTGTTTCATGT 57.949 30.769 9.38 0.00 30.45 3.21
4302 4641 5.270083 TGAAGTTAAACTGTTTCATGTGCG 58.730 37.500 9.38 0.00 0.00 5.34
4304 4643 4.844267 AGTTAAACTGTTTCATGTGCGAC 58.156 39.130 9.38 0.00 0.00 5.19
4319 4658 2.228822 GTGCGACCTCCACAAAATCATT 59.771 45.455 0.00 0.00 33.50 2.57
4320 4659 3.438781 GTGCGACCTCCACAAAATCATTA 59.561 43.478 0.00 0.00 33.50 1.90
4321 4660 4.096382 GTGCGACCTCCACAAAATCATTAT 59.904 41.667 0.00 0.00 33.50 1.28
4322 4661 4.096231 TGCGACCTCCACAAAATCATTATG 59.904 41.667 0.00 0.00 0.00 1.90
4323 4662 4.498009 GCGACCTCCACAAAATCATTATGG 60.498 45.833 0.00 0.00 0.00 2.74
4326 4665 3.243501 CCTCCACAAAATCATTATGGGCG 60.244 47.826 0.00 0.00 0.00 6.13
4327 4666 3.360867 TCCACAAAATCATTATGGGCGT 58.639 40.909 0.00 0.00 0.00 5.68
4328 4667 4.527944 TCCACAAAATCATTATGGGCGTA 58.472 39.130 0.00 0.00 0.00 4.42
4329 4668 4.578516 TCCACAAAATCATTATGGGCGTAG 59.421 41.667 0.00 0.00 0.00 3.51
4330 4669 4.338118 CCACAAAATCATTATGGGCGTAGT 59.662 41.667 0.00 0.00 0.00 2.73
4331 4670 5.529430 CCACAAAATCATTATGGGCGTAGTA 59.471 40.000 0.00 0.00 0.00 1.82
4334 4673 7.803189 CACAAAATCATTATGGGCGTAGTATTC 59.197 37.037 0.00 0.00 0.00 1.75
4335 4674 7.719633 ACAAAATCATTATGGGCGTAGTATTCT 59.280 33.333 0.00 0.00 0.00 2.40
4336 4675 9.214957 CAAAATCATTATGGGCGTAGTATTCTA 57.785 33.333 0.00 0.00 0.00 2.10
4338 4677 9.787435 AAATCATTATGGGCGTAGTATTCTAAA 57.213 29.630 0.00 0.00 0.00 1.85
4345 4708 6.742109 TGGGCGTAGTATTCTAAATCTACAC 58.258 40.000 0.00 0.00 34.32 2.90
4347 4710 6.862090 GGGCGTAGTATTCTAAATCTACACTG 59.138 42.308 0.00 0.00 34.32 3.66
4348 4711 7.424001 GGCGTAGTATTCTAAATCTACACTGT 58.576 38.462 0.00 0.00 34.32 3.55
4362 4725 6.185114 TCTACACTGTATACTACTCCCTCC 57.815 45.833 4.17 0.00 0.00 4.30
4365 4728 4.205587 CACTGTATACTACTCCCTCCGTT 58.794 47.826 4.17 0.00 0.00 4.44
4366 4729 4.275443 CACTGTATACTACTCCCTCCGTTC 59.725 50.000 4.17 0.00 0.00 3.95
4367 4730 3.819902 CTGTATACTACTCCCTCCGTTCC 59.180 52.174 4.17 0.00 0.00 3.62
4368 4731 3.461085 TGTATACTACTCCCTCCGTTCCT 59.539 47.826 4.17 0.00 0.00 3.36
4375 4738 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
4376 4739 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
4377 4740 7.786464 ACTACTCCCTCCGTTCCTAAATATTTA 59.214 37.037 7.66 7.66 0.00 1.40
4378 4741 7.628501 ACTCCCTCCGTTCCTAAATATTTAT 57.371 36.000 8.34 0.00 0.00 1.40
4379 4742 7.677892 ACTCCCTCCGTTCCTAAATATTTATC 58.322 38.462 8.34 0.61 0.00 1.75
4381 4744 8.271398 TCCCTCCGTTCCTAAATATTTATCTT 57.729 34.615 8.34 0.00 0.00 2.40
4383 4746 9.000486 CCCTCCGTTCCTAAATATTTATCTTTC 58.000 37.037 8.34 0.00 0.00 2.62
4404 4767 9.784531 TCTTTCTAGAGATTTCAACAAATGACT 57.215 29.630 0.00 0.00 37.92 3.41
4407 4770 9.996554 TTCTAGAGATTTCAACAAATGACTACA 57.003 29.630 0.00 0.00 37.92 2.74
4411 4774 8.873830 AGAGATTTCAACAAATGACTACATACG 58.126 33.333 0.00 0.00 37.92 3.06
4412 4775 7.974675 AGATTTCAACAAATGACTACATACGG 58.025 34.615 0.00 0.00 37.92 4.02
4413 4776 7.822334 AGATTTCAACAAATGACTACATACGGA 59.178 33.333 0.00 0.00 37.92 4.69
4414 4777 6.961359 TTCAACAAATGACTACATACGGAG 57.039 37.500 0.00 0.00 37.92 4.63
4415 4778 4.868171 TCAACAAATGACTACATACGGAGC 59.132 41.667 0.00 0.00 35.50 4.70
4416 4779 4.465632 ACAAATGACTACATACGGAGCA 57.534 40.909 0.00 0.00 35.50 4.26
4417 4780 4.827692 ACAAATGACTACATACGGAGCAA 58.172 39.130 0.00 0.00 35.50 3.91
4418 4781 5.242434 ACAAATGACTACATACGGAGCAAA 58.758 37.500 0.00 0.00 35.50 3.68
4419 4782 5.351465 ACAAATGACTACATACGGAGCAAAG 59.649 40.000 0.00 0.00 35.50 2.77
4420 4783 4.737855 ATGACTACATACGGAGCAAAGT 57.262 40.909 0.00 0.00 34.71 2.66
4421 4784 3.845178 TGACTACATACGGAGCAAAGTG 58.155 45.455 0.00 0.00 0.00 3.16
4422 4785 3.508402 TGACTACATACGGAGCAAAGTGA 59.492 43.478 0.00 0.00 0.00 3.41
4423 4786 4.106197 GACTACATACGGAGCAAAGTGAG 58.894 47.826 0.00 0.00 0.00 3.51
4424 4787 3.510360 ACTACATACGGAGCAAAGTGAGT 59.490 43.478 0.00 0.00 0.00 3.41
4425 4788 2.688507 ACATACGGAGCAAAGTGAGTG 58.311 47.619 0.00 0.00 0.00 3.51
4426 4789 2.299013 ACATACGGAGCAAAGTGAGTGA 59.701 45.455 0.00 0.00 0.00 3.41
4427 4790 3.244078 ACATACGGAGCAAAGTGAGTGAA 60.244 43.478 0.00 0.00 0.00 3.18
4428 4791 2.550830 ACGGAGCAAAGTGAGTGAAT 57.449 45.000 0.00 0.00 0.00 2.57
4429 4792 2.417719 ACGGAGCAAAGTGAGTGAATC 58.582 47.619 0.00 0.00 0.00 2.52
4430 4793 2.037772 ACGGAGCAAAGTGAGTGAATCT 59.962 45.455 0.00 0.00 0.00 2.40
4431 4794 3.258372 ACGGAGCAAAGTGAGTGAATCTA 59.742 43.478 0.00 0.00 0.00 1.98
4432 4795 3.614616 CGGAGCAAAGTGAGTGAATCTAC 59.385 47.826 0.00 0.00 0.00 2.59
4433 4796 4.569943 GGAGCAAAGTGAGTGAATCTACA 58.430 43.478 0.00 0.00 0.00 2.74
4434 4797 4.390297 GGAGCAAAGTGAGTGAATCTACAC 59.610 45.833 0.00 0.00 40.60 2.90
4518 4881 7.092757 ACAAATATTTAGGAACGGAGGGAGTAA 60.093 37.037 0.00 0.00 0.00 2.24
4520 4883 8.731591 AATATTTAGGAACGGAGGGAGTAATA 57.268 34.615 0.00 0.00 0.00 0.98
4521 4884 8.912614 ATATTTAGGAACGGAGGGAGTAATAT 57.087 34.615 0.00 0.00 0.00 1.28
4522 4885 6.661304 TTTAGGAACGGAGGGAGTAATATC 57.339 41.667 0.00 0.00 0.00 1.63
4523 4886 3.155501 AGGAACGGAGGGAGTAATATCG 58.844 50.000 0.00 0.00 0.00 2.92
4524 4887 2.230750 GGAACGGAGGGAGTAATATCGG 59.769 54.545 0.00 0.00 0.00 4.18
4526 4889 2.236766 ACGGAGGGAGTAATATCGGTG 58.763 52.381 0.00 0.00 0.00 4.94
4530 5217 4.154942 GGAGGGAGTAATATCGGTGGTAA 58.845 47.826 0.00 0.00 0.00 2.85
4543 5230 2.418628 CGGTGGTAATGACATGTGGTTC 59.581 50.000 1.15 0.00 0.00 3.62
4544 5231 3.417101 GGTGGTAATGACATGTGGTTCA 58.583 45.455 1.15 0.00 0.00 3.18
4545 5232 3.823873 GGTGGTAATGACATGTGGTTCAA 59.176 43.478 1.15 0.00 0.00 2.69
4546 5233 4.082787 GGTGGTAATGACATGTGGTTCAAG 60.083 45.833 1.15 0.00 0.00 3.02
4547 5234 4.518970 GTGGTAATGACATGTGGTTCAAGT 59.481 41.667 1.15 0.00 0.00 3.16
4548 5235 4.518590 TGGTAATGACATGTGGTTCAAGTG 59.481 41.667 1.15 0.00 0.00 3.16
4549 5236 4.759693 GGTAATGACATGTGGTTCAAGTGA 59.240 41.667 1.15 0.00 0.00 3.41
4550 5237 5.415701 GGTAATGACATGTGGTTCAAGTGAT 59.584 40.000 1.15 0.00 0.00 3.06
4551 5238 5.381174 AATGACATGTGGTTCAAGTGATG 57.619 39.130 1.15 0.00 0.00 3.07
4552 5239 4.084011 TGACATGTGGTTCAAGTGATGA 57.916 40.909 1.15 0.00 35.85 2.92
4553 5240 3.814842 TGACATGTGGTTCAAGTGATGAC 59.185 43.478 1.15 0.00 37.92 3.06
4554 5241 4.067896 GACATGTGGTTCAAGTGATGACT 58.932 43.478 1.15 0.00 37.92 3.41
4555 5242 4.464008 ACATGTGGTTCAAGTGATGACTT 58.536 39.130 0.00 0.00 43.63 3.01
4566 5253 5.407407 AAGTGATGACTTGTACTGGGTAG 57.593 43.478 0.00 0.00 41.12 3.18
4567 5254 4.673968 AGTGATGACTTGTACTGGGTAGA 58.326 43.478 0.00 0.00 0.00 2.59
4568 5255 5.273208 AGTGATGACTTGTACTGGGTAGAT 58.727 41.667 0.00 0.00 0.00 1.98
4569 5256 5.721960 AGTGATGACTTGTACTGGGTAGATT 59.278 40.000 0.00 0.00 0.00 2.40
4570 5257 5.812642 GTGATGACTTGTACTGGGTAGATTG 59.187 44.000 0.00 0.00 0.00 2.67
4571 5258 5.719563 TGATGACTTGTACTGGGTAGATTGA 59.280 40.000 0.00 0.00 0.00 2.57
4572 5259 6.384015 TGATGACTTGTACTGGGTAGATTGAT 59.616 38.462 0.00 0.00 0.00 2.57
4573 5260 6.620877 TGACTTGTACTGGGTAGATTGATT 57.379 37.500 0.00 0.00 0.00 2.57
4574 5261 7.016153 TGACTTGTACTGGGTAGATTGATTT 57.984 36.000 0.00 0.00 0.00 2.17
4575 5262 7.458397 TGACTTGTACTGGGTAGATTGATTTT 58.542 34.615 0.00 0.00 0.00 1.82
4576 5263 7.606456 TGACTTGTACTGGGTAGATTGATTTTC 59.394 37.037 0.00 0.00 0.00 2.29
4577 5264 6.884836 ACTTGTACTGGGTAGATTGATTTTCC 59.115 38.462 0.00 0.00 0.00 3.13
4578 5265 6.636454 TGTACTGGGTAGATTGATTTTCCT 57.364 37.500 0.00 0.00 0.00 3.36
4579 5266 7.027874 TGTACTGGGTAGATTGATTTTCCTT 57.972 36.000 0.00 0.00 0.00 3.36
4620 5814 5.597813 TCTGAATTTTCTTGAGCGAAGAC 57.402 39.130 1.09 0.00 40.60 3.01
4623 5817 6.260936 TCTGAATTTTCTTGAGCGAAGACTTT 59.739 34.615 1.09 0.00 40.60 2.66
4624 5818 6.795399 TGAATTTTCTTGAGCGAAGACTTTT 58.205 32.000 1.09 0.00 40.60 2.27
4625 5819 7.925993 TGAATTTTCTTGAGCGAAGACTTTTA 58.074 30.769 1.09 0.00 40.60 1.52
4626 5820 8.402472 TGAATTTTCTTGAGCGAAGACTTTTAA 58.598 29.630 1.09 0.00 40.60 1.52
4627 5821 8.561932 AATTTTCTTGAGCGAAGACTTTTAAC 57.438 30.769 1.09 0.00 40.60 2.01
4628 5822 6.920569 TTTCTTGAGCGAAGACTTTTAACT 57.079 33.333 1.09 0.00 40.60 2.24
4629 5823 6.526566 TTCTTGAGCGAAGACTTTTAACTC 57.473 37.500 1.09 0.00 40.60 3.01
4630 5824 5.844004 TCTTGAGCGAAGACTTTTAACTCT 58.156 37.500 0.00 0.00 35.64 3.24
4631 5825 5.692204 TCTTGAGCGAAGACTTTTAACTCTG 59.308 40.000 0.00 0.00 35.64 3.35
4632 5826 3.741344 TGAGCGAAGACTTTTAACTCTGC 59.259 43.478 0.00 0.00 0.00 4.26
4633 5827 3.728845 AGCGAAGACTTTTAACTCTGCA 58.271 40.909 0.00 0.00 0.00 4.41
4634 5828 4.127171 AGCGAAGACTTTTAACTCTGCAA 58.873 39.130 0.00 0.00 0.00 4.08
4635 5829 4.574828 AGCGAAGACTTTTAACTCTGCAAA 59.425 37.500 0.00 0.00 0.00 3.68
4636 5830 4.671068 GCGAAGACTTTTAACTCTGCAAAC 59.329 41.667 0.00 0.00 0.00 2.93
4642 5836 6.599638 AGACTTTTAACTCTGCAAACTTGTCT 59.400 34.615 0.00 0.00 0.00 3.41
4652 5846 3.119884 TGCAAACTTGTCTGTGTGTCTTG 60.120 43.478 0.00 0.00 0.00 3.02
4658 5852 3.342377 TGTCTGTGTGTCTTGGTTTGA 57.658 42.857 0.00 0.00 0.00 2.69
4675 5869 0.620556 TGATGTCTCAGGCCCTTTCC 59.379 55.000 0.00 0.00 0.00 3.13
4677 5871 0.915364 ATGTCTCAGGCCCTTTCCTC 59.085 55.000 0.00 0.00 33.25 3.71
4686 5880 2.764314 CCCTTTCCTCGGCAATGCG 61.764 63.158 0.00 0.00 0.00 4.73
4693 5887 3.707156 CTCGGCAATGCGAGCAACG 62.707 63.158 12.41 5.30 45.66 4.10
4698 5892 0.430858 GCAATGCGAGCAACGTTTTC 59.569 50.000 0.00 0.00 44.60 2.29
4713 5907 4.110186 CGTTTTCGTCGAAGTTGAATCA 57.890 40.909 7.86 0.00 38.65 2.57
4714 5908 4.698276 CGTTTTCGTCGAAGTTGAATCAT 58.302 39.130 7.86 0.00 38.65 2.45
4718 5912 6.539649 TTTCGTCGAAGTTGAATCATTTCT 57.460 33.333 7.86 0.00 32.78 2.52
4720 5914 5.915857 TCGTCGAAGTTGAATCATTTCTTG 58.084 37.500 0.00 0.00 32.78 3.02
4733 5927 2.079170 TTTCTTGTGCAATCCCCACA 57.921 45.000 0.00 0.00 41.11 4.17
4740 5934 2.036992 TGTGCAATCCCCACAAAATCAC 59.963 45.455 0.00 0.00 40.00 3.06
4749 5943 3.007182 CCCCACAAAATCACAGATTGCTT 59.993 43.478 0.00 0.00 0.00 3.91
4760 5954 3.473093 CAGATTGCTTCTGCTTCACAG 57.527 47.619 4.62 0.00 45.16 3.66
4762 5956 3.999001 CAGATTGCTTCTGCTTCACAGTA 59.001 43.478 4.62 0.00 45.16 2.74
4773 5967 3.873361 TGCTTCACAGTATCTAAGCATGC 59.127 43.478 10.51 10.51 46.83 4.06
4784 5978 2.038952 TCTAAGCATGCCAGTGTGAACT 59.961 45.455 15.66 0.00 0.00 3.01
4799 5993 6.146184 CAGTGTGAACTCATCGTATTTGTTCT 59.854 38.462 0.00 0.00 38.17 3.01
4804 5998 7.530861 GTGAACTCATCGTATTTGTTCTTCAAC 59.469 37.037 0.00 0.00 38.17 3.18
4809 6003 8.541133 TCATCGTATTTGTTCTTCAACATACA 57.459 30.769 0.00 0.00 42.28 2.29
4811 6005 9.605955 CATCGTATTTGTTCTTCAACATACAAA 57.394 29.630 0.00 0.00 42.28 2.83
4820 6014 5.507077 TCTTCAACATACAAACAAAGCGAC 58.493 37.500 0.00 0.00 0.00 5.19
4844 6038 7.375834 ACGAATAAATCTAATATCGCTGGTGA 58.624 34.615 0.00 0.00 0.00 4.02
4859 6053 4.698780 CGCTGGTGATGATCCATTTATCAT 59.301 41.667 0.00 0.00 46.77 2.45
4860 6054 5.182570 CGCTGGTGATGATCCATTTATCATT 59.817 40.000 1.21 0.00 44.69 2.57
4864 6058 5.479375 GGTGATGATCCATTTATCATTGGCT 59.521 40.000 1.21 0.00 44.69 4.75
4865 6059 6.660521 GGTGATGATCCATTTATCATTGGCTA 59.339 38.462 1.21 0.00 44.69 3.93
4886 6276 5.048224 GCTACTTGATATTACGGTCTAGCCA 60.048 44.000 4.43 0.00 36.97 4.75
4888 6278 4.894114 ACTTGATATTACGGTCTAGCCAGT 59.106 41.667 4.43 0.00 36.97 4.00
4943 6341 6.936900 TGTTTCAAATGAAAACACAAGGGAAA 59.063 30.769 9.98 0.00 44.58 3.13
4944 6342 7.445402 TGTTTCAAATGAAAACACAAGGGAAAA 59.555 29.630 9.98 0.00 44.58 2.29
4945 6343 8.458052 GTTTCAAATGAAAACACAAGGGAAAAT 58.542 29.630 9.98 0.00 44.58 1.82
4946 6344 7.551035 TCAAATGAAAACACAAGGGAAAATG 57.449 32.000 0.00 0.00 0.00 2.32
4947 6345 7.108847 TCAAATGAAAACACAAGGGAAAATGT 58.891 30.769 0.00 0.00 0.00 2.71
4948 6346 7.279758 TCAAATGAAAACACAAGGGAAAATGTC 59.720 33.333 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
151 264 4.250305 AAAGAGGCACGCCCGTGT 62.250 61.111 20.25 3.34 46.90 4.49
199 315 1.464997 GTGCCTCTCGCGAAAGAAAAT 59.535 47.619 11.91 0.00 42.08 1.82
221 338 0.242017 GCCTTTCGCAGAAGCACAAT 59.758 50.000 0.00 0.00 45.90 2.71
493 748 3.047877 CGAACCAGGAACACGGGC 61.048 66.667 0.00 0.00 38.06 6.13
594 891 3.911964 CGTCCAAATTTCGAATCGCTTTT 59.088 39.130 0.00 0.00 0.00 2.27
607 904 2.879646 TCTTAAACCGTGCGTCCAAATT 59.120 40.909 0.00 0.00 0.00 1.82
665 962 3.761218 TGTTGCAACCTGAGAGTTTTTCA 59.239 39.130 26.14 0.00 0.00 2.69
667 964 4.220602 ACTTGTTGCAACCTGAGAGTTTTT 59.779 37.500 26.14 2.94 0.00 1.94
692 989 3.179265 GACGCGCTGCATGTACGT 61.179 61.111 5.73 4.20 40.11 3.57
773 1070 2.048597 GCACGACGTGACATCCCA 60.049 61.111 31.08 0.00 35.23 4.37
791 1088 6.036300 TGCCTTTTTCGAATTGGTACTATACG 59.964 38.462 0.00 0.00 0.00 3.06
797 1094 5.465935 TCAATGCCTTTTTCGAATTGGTAC 58.534 37.500 0.00 0.00 0.00 3.34
1028 1331 0.391395 GTCAGAGTCGGAGAGGTCGA 60.391 60.000 0.00 0.00 36.95 4.20
1044 1347 2.610694 GGAGGTGTCGTCGTCGTCA 61.611 63.158 1.33 0.00 38.33 4.35
1341 1650 2.355363 CGGACGAAAGACACGGCA 60.355 61.111 0.00 0.00 40.86 5.69
1698 2007 1.446907 CTGGCGAGAAAGCATCACTT 58.553 50.000 0.00 0.00 41.70 3.16
1749 2058 0.034089 TCAGAGGTCTCAGCATCGGA 60.034 55.000 0.55 0.00 0.00 4.55
1817 2126 2.711924 GCGCAAGGCTCTGTATGC 59.288 61.111 0.30 0.00 39.11 3.14
1881 2190 2.682856 GTGCTCAAAGTTCTTGACCACA 59.317 45.455 7.66 0.00 35.91 4.17
2028 2337 4.137872 CCCTTGGCATGCGGCTTG 62.138 66.667 12.44 11.18 44.01 4.01
2055 2364 3.244700 CCTTCCCTGTCTCAATGTCAAGT 60.245 47.826 0.00 0.00 0.00 3.16
2094 2403 3.245371 TGTCAGCTCCATCTTTCCCAAAT 60.245 43.478 0.00 0.00 0.00 2.32
2097 2406 1.361204 TGTCAGCTCCATCTTTCCCA 58.639 50.000 0.00 0.00 0.00 4.37
2103 2412 5.363562 TCATGTTAATGTCAGCTCCATCT 57.636 39.130 0.00 0.00 35.15 2.90
2126 2435 5.186021 CCCTTGCTATCGTTAGTGATATCCT 59.814 44.000 0.00 0.00 30.79 3.24
2139 2448 2.511373 TGTGCGCCCTTGCTATCG 60.511 61.111 4.18 0.00 35.36 2.92
2202 2511 0.843309 TCATATCCCACCGGCACAAT 59.157 50.000 0.00 0.00 0.00 2.71
2229 2538 2.991190 CAAGTTCTGCACAATTCCATGC 59.009 45.455 0.00 0.00 42.40 4.06
2238 2547 2.638480 AACTAGCCAAGTTCTGCACA 57.362 45.000 0.00 0.00 45.64 4.57
2259 2568 0.035056 CCAACACTGGGGACTCCATC 60.035 60.000 0.00 0.00 46.01 3.51
2292 2601 1.065126 GTTCCCCTGGAGAACTGATGG 60.065 57.143 13.25 0.00 40.39 3.51
2340 2649 2.548067 GCCTACCACAATAGACCCATCG 60.548 54.545 0.00 0.00 0.00 3.84
2349 2658 3.431626 CGTCCAATGAGCCTACCACAATA 60.432 47.826 0.00 0.00 0.00 1.90
2352 2661 0.249120 CGTCCAATGAGCCTACCACA 59.751 55.000 0.00 0.00 0.00 4.17
2379 2688 3.654414 AGAGCTCTTTGAGTACAAACGG 58.346 45.455 11.45 0.00 40.47 4.44
2382 2691 6.437477 TCCTCATAGAGCTCTTTGAGTACAAA 59.563 38.462 39.13 25.62 44.91 2.83
2506 2815 8.355169 GTCAATGAAAATGGTGCATATGAGTAT 58.645 33.333 6.97 0.00 0.00 2.12
2556 2865 2.299013 GTTCCCCATTCTTCCACCAAAC 59.701 50.000 0.00 0.00 0.00 2.93
2616 2925 0.747283 CCCCTGCAAGATGAGAGTGC 60.747 60.000 0.00 0.00 38.78 4.40
2640 2949 1.295423 GCCCTCACGGAACTTGCTA 59.705 57.895 0.00 0.00 0.00 3.49
2693 3002 5.902613 TTTGAGCAGGAATTCACAATAGG 57.097 39.130 7.93 0.00 0.00 2.57
2734 3043 4.322567 AGACCTCTTTCAAGTCTTCATGC 58.677 43.478 0.00 0.00 37.60 4.06
2748 3057 9.594936 ACATAGCATTTAGATACTAGACCTCTT 57.405 33.333 0.00 0.00 0.00 2.85
2749 3058 9.594936 AACATAGCATTTAGATACTAGACCTCT 57.405 33.333 0.00 0.00 0.00 3.69
2750 3059 9.632807 CAACATAGCATTTAGATACTAGACCTC 57.367 37.037 0.00 0.00 0.00 3.85
2797 3120 5.046087 TGTCACTTCTGGTCATCTGATCATT 60.046 40.000 0.00 0.00 34.21 2.57
2798 3121 4.468868 TGTCACTTCTGGTCATCTGATCAT 59.531 41.667 0.00 0.00 34.21 2.45
2899 3222 4.139038 GCCCTGTGTGACTAAAAACCTAA 58.861 43.478 0.00 0.00 0.00 2.69
2900 3223 3.746940 GCCCTGTGTGACTAAAAACCTA 58.253 45.455 0.00 0.00 0.00 3.08
2908 3231 0.323087 TCTAGCGCCCTGTGTGACTA 60.323 55.000 2.29 0.00 0.00 2.59
2909 3232 0.972983 ATCTAGCGCCCTGTGTGACT 60.973 55.000 2.29 0.00 0.00 3.41
2918 3241 3.438360 CACAAAATTGAATCTAGCGCCC 58.562 45.455 2.29 0.00 0.00 6.13
2921 3244 4.361451 AGCCACAAAATTGAATCTAGCG 57.639 40.909 0.00 0.00 0.00 4.26
2931 3254 4.612264 AATGAGCAGAAGCCACAAAATT 57.388 36.364 0.00 0.00 43.56 1.82
3144 3467 3.580022 TGCTGGTGCTATATGCTAGTGAT 59.420 43.478 0.00 0.00 43.37 3.06
3159 3482 2.192861 TCAAACCGGCTTGCTGGTG 61.193 57.895 24.74 14.39 38.82 4.17
3298 3622 8.688151 ACATTGAAACCTAGACAGTCTATACTC 58.312 37.037 10.88 6.49 31.97 2.59
3300 3625 9.654663 AAACATTGAAACCTAGACAGTCTATAC 57.345 33.333 10.88 2.63 0.00 1.47
3307 3632 5.471456 AGCTCAAACATTGAAACCTAGACAG 59.529 40.000 0.00 0.00 39.58 3.51
3342 3667 6.877322 ACCTAGACAATGTACCATGTGTAAAC 59.123 38.462 5.46 0.00 0.00 2.01
3358 3683 5.654650 ACCACAAACATTGAAACCTAGACAA 59.345 36.000 0.00 0.00 0.00 3.18
3359 3684 5.197451 ACCACAAACATTGAAACCTAGACA 58.803 37.500 0.00 0.00 0.00 3.41
3360 3685 5.531287 AGACCACAAACATTGAAACCTAGAC 59.469 40.000 0.00 0.00 0.00 2.59
3361 3686 5.690865 AGACCACAAACATTGAAACCTAGA 58.309 37.500 0.00 0.00 0.00 2.43
3362 3687 6.391227 AAGACCACAAACATTGAAACCTAG 57.609 37.500 0.00 0.00 0.00 3.02
3363 3688 6.783708 AAAGACCACAAACATTGAAACCTA 57.216 33.333 0.00 0.00 0.00 3.08
3364 3689 5.675684 AAAGACCACAAACATTGAAACCT 57.324 34.783 0.00 0.00 0.00 3.50
3365 3690 6.645003 GGATAAAGACCACAAACATTGAAACC 59.355 38.462 0.00 0.00 0.00 3.27
3366 3691 7.206687 TGGATAAAGACCACAAACATTGAAAC 58.793 34.615 0.00 0.00 32.03 2.78
3367 3692 7.353414 TGGATAAAGACCACAAACATTGAAA 57.647 32.000 0.00 0.00 32.03 2.69
3368 3693 6.968263 TGGATAAAGACCACAAACATTGAA 57.032 33.333 0.00 0.00 32.03 2.69
3369 3694 6.071447 CCATGGATAAAGACCACAAACATTGA 60.071 38.462 5.56 0.00 40.36 2.57
3370 3695 6.101332 CCATGGATAAAGACCACAAACATTG 58.899 40.000 5.56 0.00 40.36 2.82
3371 3696 5.779771 ACCATGGATAAAGACCACAAACATT 59.220 36.000 21.47 0.00 40.36 2.71
3372 3697 5.332743 ACCATGGATAAAGACCACAAACAT 58.667 37.500 21.47 0.00 40.36 2.71
3373 3698 4.735369 ACCATGGATAAAGACCACAAACA 58.265 39.130 21.47 0.00 40.36 2.83
3374 3699 5.722021 AACCATGGATAAAGACCACAAAC 57.278 39.130 21.47 0.00 40.36 2.93
3386 3711 4.665009 AGCCAGATTTCCTAACCATGGATA 59.335 41.667 21.47 10.62 33.09 2.59
3387 3712 3.464833 AGCCAGATTTCCTAACCATGGAT 59.535 43.478 21.47 9.83 33.09 3.41
3388 3713 2.852449 AGCCAGATTTCCTAACCATGGA 59.148 45.455 21.47 0.00 0.00 3.41
3389 3714 2.954318 CAGCCAGATTTCCTAACCATGG 59.046 50.000 11.19 11.19 0.00 3.66
3491 3816 3.362706 AGGTGATTCAAATGCAGCAGAT 58.637 40.909 0.00 0.00 32.81 2.90
3568 3901 2.560542 CTCCATAGAGAAGGGGATCGTG 59.439 54.545 0.00 0.00 43.39 4.35
3580 3913 4.699257 GGGCAGCAAATTATCTCCATAGAG 59.301 45.833 0.00 0.00 41.93 2.43
3582 3915 4.217118 GTGGGCAGCAAATTATCTCCATAG 59.783 45.833 0.00 0.00 0.00 2.23
3583 3916 4.144297 GTGGGCAGCAAATTATCTCCATA 58.856 43.478 0.00 0.00 0.00 2.74
3586 3919 2.378038 TGTGGGCAGCAAATTATCTCC 58.622 47.619 0.00 0.00 0.00 3.71
3591 3924 3.323115 TGTTCATTGTGGGCAGCAAATTA 59.677 39.130 0.00 0.00 0.00 1.40
3597 3930 1.001181 ACATTGTTCATTGTGGGCAGC 59.999 47.619 0.52 0.00 0.00 5.25
3603 3936 5.660629 AAATGCACACATTGTTCATTGTG 57.339 34.783 19.45 19.45 41.91 3.33
3604 3937 6.680874 AAAAATGCACACATTGTTCATTGT 57.319 29.167 5.18 0.00 41.91 2.71
3607 3940 9.357652 GATAGTAAAAATGCACACATTGTTCAT 57.642 29.630 0.00 0.00 45.90 2.57
3644 3977 4.097437 CCTGCGTGGTTACTAGATTGAGTA 59.903 45.833 0.00 0.00 0.00 2.59
3660 3993 1.410737 CGTTATCCGTGACCTGCGTG 61.411 60.000 0.00 0.00 0.00 5.34
3772 4105 1.492133 TTCAGCCCCTCCTGGTTCTG 61.492 60.000 0.00 0.00 34.31 3.02
3789 4122 2.949451 TGTAGCAGTAGCAGCTCTTC 57.051 50.000 0.00 0.00 45.49 2.87
3795 4128 3.452474 GATCACCTTGTAGCAGTAGCAG 58.548 50.000 0.00 0.00 45.49 4.24
3810 4143 1.265454 ACTCGTCCTTGGGGATCACC 61.265 60.000 7.20 7.20 44.33 4.02
3855 4188 2.095869 GTCGCTCAAGTCGTACTTCTCA 60.096 50.000 0.00 0.00 36.03 3.27
3868 4201 2.659016 CTCAGGGCAGTCGCTCAA 59.341 61.111 0.00 0.00 43.19 3.02
3906 4239 1.077429 GGAGGTGACCTTCATGGGC 60.077 63.158 5.21 0.00 46.75 5.36
3958 4291 1.048601 AAAGAACACTGAGAGGCGGA 58.951 50.000 0.00 0.00 0.00 5.54
4025 4361 2.607811 TGGAAGTCCAGATCCGCAT 58.392 52.632 0.00 0.00 42.01 4.73
4094 4431 7.100458 AGTTTTGGCTATCAATCCACATAAC 57.900 36.000 0.00 0.00 34.98 1.89
4107 4444 7.506114 TCAATCCGTAAGATAGTTTTGGCTAT 58.494 34.615 0.00 0.00 43.02 2.97
4129 4466 7.337938 TCAATCTAGCCAGTACAAATCATCAA 58.662 34.615 0.00 0.00 0.00 2.57
4219 4556 5.335127 GCATCAAATAGAACCATGACACAC 58.665 41.667 0.00 0.00 0.00 3.82
4246 4584 2.424705 CTTGCATTGCCAACGTGCCT 62.425 55.000 6.12 0.00 38.06 4.75
4250 4588 1.300080 GCACTTGCATTGCCAACGT 60.300 52.632 6.12 0.00 41.59 3.99
4275 4613 7.253750 GCACATGAAACAGTTTAACTTCAACAG 60.254 37.037 0.00 0.00 31.94 3.16
4296 4635 1.812571 GATTTTGTGGAGGTCGCACAT 59.187 47.619 0.00 0.00 35.33 3.21
4299 4638 2.198827 ATGATTTTGTGGAGGTCGCA 57.801 45.000 0.00 0.00 0.00 5.10
4302 4641 4.202151 GCCCATAATGATTTTGTGGAGGTC 60.202 45.833 3.04 0.00 31.59 3.85
4304 4643 3.243501 CGCCCATAATGATTTTGTGGAGG 60.244 47.826 3.04 0.00 31.59 4.30
4319 4658 8.517878 GTGTAGATTTAGAATACTACGCCCATA 58.482 37.037 0.00 0.00 39.14 2.74
4320 4659 7.232941 AGTGTAGATTTAGAATACTACGCCCAT 59.767 37.037 0.00 0.00 43.13 4.00
4321 4660 6.548622 AGTGTAGATTTAGAATACTACGCCCA 59.451 38.462 0.00 0.00 43.13 5.36
4322 4661 6.862090 CAGTGTAGATTTAGAATACTACGCCC 59.138 42.308 0.00 0.00 43.13 6.13
4323 4662 7.424001 ACAGTGTAGATTTAGAATACTACGCC 58.576 38.462 0.00 0.00 43.13 5.68
4334 4673 9.796180 AGGGAGTAGTATACAGTGTAGATTTAG 57.204 37.037 9.25 0.00 46.26 1.85
4335 4674 9.790344 GAGGGAGTAGTATACAGTGTAGATTTA 57.210 37.037 9.25 0.00 46.26 1.40
4336 4675 7.724951 GGAGGGAGTAGTATACAGTGTAGATTT 59.275 40.741 9.25 0.22 46.26 2.17
4338 4677 6.520401 CGGAGGGAGTAGTATACAGTGTAGAT 60.520 46.154 9.25 0.00 46.26 1.98
4342 4705 3.201708 ACGGAGGGAGTAGTATACAGTGT 59.798 47.826 5.50 0.00 46.26 3.55
4343 4706 3.818180 ACGGAGGGAGTAGTATACAGTG 58.182 50.000 5.50 0.00 46.26 3.66
4345 4708 3.819902 GGAACGGAGGGAGTAGTATACAG 59.180 52.174 5.50 0.00 46.26 2.74
4347 4710 4.097551 AGGAACGGAGGGAGTAGTATAC 57.902 50.000 0.00 0.00 43.47 1.47
4348 4711 5.912149 TTAGGAACGGAGGGAGTAGTATA 57.088 43.478 0.00 0.00 0.00 1.47
4356 4719 7.867160 AGATAAATATTTAGGAACGGAGGGA 57.133 36.000 13.15 0.00 0.00 4.20
4378 4741 9.784531 AGTCATTTGTTGAAATCTCTAGAAAGA 57.215 29.630 0.00 0.00 35.70 2.52
4381 4744 9.996554 TGTAGTCATTTGTTGAAATCTCTAGAA 57.003 29.630 0.00 0.00 35.70 2.10
4388 4751 7.970384 TCCGTATGTAGTCATTTGTTGAAATC 58.030 34.615 0.00 0.00 35.70 2.17
4389 4752 7.414098 GCTCCGTATGTAGTCATTTGTTGAAAT 60.414 37.037 0.00 0.00 35.70 2.17
4390 4753 6.128391 GCTCCGTATGTAGTCATTTGTTGAAA 60.128 38.462 0.00 0.00 35.70 2.69
4391 4754 5.350365 GCTCCGTATGTAGTCATTTGTTGAA 59.650 40.000 0.00 0.00 35.70 2.69
4393 4756 4.629634 TGCTCCGTATGTAGTCATTTGTTG 59.370 41.667 0.00 0.00 35.70 3.33
4394 4757 4.827692 TGCTCCGTATGTAGTCATTTGTT 58.172 39.130 0.00 0.00 35.70 2.83
4395 4758 4.465632 TGCTCCGTATGTAGTCATTTGT 57.534 40.909 0.00 0.00 35.70 2.83
4396 4759 5.351465 ACTTTGCTCCGTATGTAGTCATTTG 59.649 40.000 0.00 0.00 35.70 2.32
4397 4760 5.351465 CACTTTGCTCCGTATGTAGTCATTT 59.649 40.000 0.00 0.00 35.70 2.32
4399 4762 4.159693 TCACTTTGCTCCGTATGTAGTCAT 59.840 41.667 0.00 0.00 38.00 3.06
4403 4766 3.859961 CACTCACTTTGCTCCGTATGTAG 59.140 47.826 0.00 0.00 0.00 2.74
4404 4767 3.508402 TCACTCACTTTGCTCCGTATGTA 59.492 43.478 0.00 0.00 0.00 2.29
4405 4768 2.299013 TCACTCACTTTGCTCCGTATGT 59.701 45.455 0.00 0.00 0.00 2.29
4406 4769 2.959516 TCACTCACTTTGCTCCGTATG 58.040 47.619 0.00 0.00 0.00 2.39
4407 4770 3.678056 TTCACTCACTTTGCTCCGTAT 57.322 42.857 0.00 0.00 0.00 3.06
4408 4771 3.258372 AGATTCACTCACTTTGCTCCGTA 59.742 43.478 0.00 0.00 0.00 4.02
4409 4772 2.037772 AGATTCACTCACTTTGCTCCGT 59.962 45.455 0.00 0.00 0.00 4.69
4410 4773 2.693069 AGATTCACTCACTTTGCTCCG 58.307 47.619 0.00 0.00 0.00 4.63
4411 4774 4.390297 GTGTAGATTCACTCACTTTGCTCC 59.610 45.833 0.00 0.00 35.68 4.70
4412 4775 5.233988 AGTGTAGATTCACTCACTTTGCTC 58.766 41.667 0.00 0.00 44.07 4.26
4413 4776 5.220710 AGTGTAGATTCACTCACTTTGCT 57.779 39.130 0.00 0.00 44.07 3.91
4489 4852 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
4490 4853 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
4491 4854 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
4492 4855 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
4494 4857 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
4495 4858 7.628501 ATTACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
4502 4865 3.155501 CGATATTACTCCCTCCGTTCCT 58.844 50.000 0.00 0.00 0.00 3.36
4503 4866 2.230750 CCGATATTACTCCCTCCGTTCC 59.769 54.545 0.00 0.00 0.00 3.62
4504 4867 2.889678 ACCGATATTACTCCCTCCGTTC 59.110 50.000 0.00 0.00 0.00 3.95
4505 4868 2.626743 CACCGATATTACTCCCTCCGTT 59.373 50.000 0.00 0.00 0.00 4.44
4511 4874 5.011329 TGTCATTACCACCGATATTACTCCC 59.989 44.000 0.00 0.00 0.00 4.30
4518 4881 4.102524 ACCACATGTCATTACCACCGATAT 59.897 41.667 0.00 0.00 0.00 1.63
4520 4883 2.238646 ACCACATGTCATTACCACCGAT 59.761 45.455 0.00 0.00 0.00 4.18
4521 4884 1.626321 ACCACATGTCATTACCACCGA 59.374 47.619 0.00 0.00 0.00 4.69
4522 4885 2.107950 ACCACATGTCATTACCACCG 57.892 50.000 0.00 0.00 0.00 4.94
4523 4886 3.417101 TGAACCACATGTCATTACCACC 58.583 45.455 0.00 0.00 0.00 4.61
4524 4887 4.518970 ACTTGAACCACATGTCATTACCAC 59.481 41.667 0.00 0.00 32.60 4.16
4526 4889 4.759693 TCACTTGAACCACATGTCATTACC 59.240 41.667 0.00 0.00 35.22 2.85
4530 5217 4.456911 GTCATCACTTGAACCACATGTCAT 59.543 41.667 0.00 0.00 35.70 3.06
4544 5231 5.084519 TCTACCCAGTACAAGTCATCACTT 58.915 41.667 0.00 0.00 44.26 3.16
4545 5232 4.673968 TCTACCCAGTACAAGTCATCACT 58.326 43.478 0.00 0.00 0.00 3.41
4546 5233 5.599999 ATCTACCCAGTACAAGTCATCAC 57.400 43.478 0.00 0.00 0.00 3.06
4547 5234 5.719563 TCAATCTACCCAGTACAAGTCATCA 59.280 40.000 0.00 0.00 0.00 3.07
4548 5235 6.222038 TCAATCTACCCAGTACAAGTCATC 57.778 41.667 0.00 0.00 0.00 2.92
4549 5236 6.814954 ATCAATCTACCCAGTACAAGTCAT 57.185 37.500 0.00 0.00 0.00 3.06
4550 5237 6.620877 AATCAATCTACCCAGTACAAGTCA 57.379 37.500 0.00 0.00 0.00 3.41
4551 5238 7.065923 GGAAAATCAATCTACCCAGTACAAGTC 59.934 40.741 0.00 0.00 0.00 3.01
4552 5239 6.884836 GGAAAATCAATCTACCCAGTACAAGT 59.115 38.462 0.00 0.00 0.00 3.16
4553 5240 7.112779 AGGAAAATCAATCTACCCAGTACAAG 58.887 38.462 0.00 0.00 0.00 3.16
4554 5241 7.027874 AGGAAAATCAATCTACCCAGTACAA 57.972 36.000 0.00 0.00 0.00 2.41
4555 5242 6.636454 AGGAAAATCAATCTACCCAGTACA 57.364 37.500 0.00 0.00 0.00 2.90
4556 5243 7.939784 AAAGGAAAATCAATCTACCCAGTAC 57.060 36.000 0.00 0.00 0.00 2.73
4557 5244 8.950007 AAAAAGGAAAATCAATCTACCCAGTA 57.050 30.769 0.00 0.00 0.00 2.74
4558 5245 7.855784 AAAAAGGAAAATCAATCTACCCAGT 57.144 32.000 0.00 0.00 0.00 4.00
4587 5274 8.915057 TCAAGAAAATTCAGAATCAGTCTTCT 57.085 30.769 10.77 6.06 35.88 2.85
4600 5287 6.377327 AAAGTCTTCGCTCAAGAAAATTCA 57.623 33.333 0.00 0.00 43.10 2.57
4608 5802 5.613577 GCAGAGTTAAAAGTCTTCGCTCAAG 60.614 44.000 0.00 0.00 36.59 3.02
4620 5814 6.470235 CACAGACAAGTTTGCAGAGTTAAAAG 59.530 38.462 0.00 0.00 0.00 2.27
4623 5817 4.941263 ACACAGACAAGTTTGCAGAGTTAA 59.059 37.500 0.00 0.00 0.00 2.01
4624 5818 4.332543 CACACAGACAAGTTTGCAGAGTTA 59.667 41.667 0.00 0.00 0.00 2.24
4625 5819 3.127548 CACACAGACAAGTTTGCAGAGTT 59.872 43.478 0.00 0.00 0.00 3.01
4626 5820 2.679837 CACACAGACAAGTTTGCAGAGT 59.320 45.455 0.00 0.00 0.00 3.24
4627 5821 2.679837 ACACACAGACAAGTTTGCAGAG 59.320 45.455 0.00 0.00 0.00 3.35
4628 5822 2.677836 GACACACAGACAAGTTTGCAGA 59.322 45.455 0.00 0.00 0.00 4.26
4629 5823 2.679837 AGACACACAGACAAGTTTGCAG 59.320 45.455 0.00 0.00 0.00 4.41
4630 5824 2.710377 AGACACACAGACAAGTTTGCA 58.290 42.857 0.00 0.00 0.00 4.08
4631 5825 3.429085 CAAGACACACAGACAAGTTTGC 58.571 45.455 0.00 0.00 0.00 3.68
4632 5826 3.440173 ACCAAGACACACAGACAAGTTTG 59.560 43.478 0.00 0.00 0.00 2.93
4633 5827 3.686016 ACCAAGACACACAGACAAGTTT 58.314 40.909 0.00 0.00 0.00 2.66
4634 5828 3.350219 ACCAAGACACACAGACAAGTT 57.650 42.857 0.00 0.00 0.00 2.66
4635 5829 3.350219 AACCAAGACACACAGACAAGT 57.650 42.857 0.00 0.00 0.00 3.16
4636 5830 3.689161 TCAAACCAAGACACACAGACAAG 59.311 43.478 0.00 0.00 0.00 3.16
4642 5836 3.876914 GAGACATCAAACCAAGACACACA 59.123 43.478 0.00 0.00 0.00 3.72
4652 5846 0.329596 AGGGCCTGAGACATCAAACC 59.670 55.000 4.50 0.00 34.23 3.27
4658 5852 0.915364 GAGGAAAGGGCCTGAGACAT 59.085 55.000 6.92 0.00 38.73 3.06
4677 5871 3.593551 AACGTTGCTCGCATTGCCG 62.594 57.895 0.00 2.14 44.19 5.69
4686 5880 1.257155 ACTTCGACGAAAACGTTGCTC 59.743 47.619 12.03 0.58 0.00 4.26
4693 5887 6.851330 AGAAATGATTCAACTTCGACGAAAAC 59.149 34.615 12.03 0.00 38.06 2.43
4698 5892 5.561499 CACAAGAAATGATTCAACTTCGACG 59.439 40.000 0.00 0.00 38.06 5.12
4701 5895 5.214417 TGCACAAGAAATGATTCAACTTCG 58.786 37.500 0.00 0.00 38.06 3.79
4708 5902 4.081531 TGGGGATTGCACAAGAAATGATTC 60.082 41.667 0.00 0.00 35.70 2.52
4711 5905 2.562298 GTGGGGATTGCACAAGAAATGA 59.438 45.455 0.00 0.00 0.00 2.57
4713 5907 2.607499 TGTGGGGATTGCACAAGAAAT 58.393 42.857 0.00 0.00 0.00 2.17
4714 5908 2.079170 TGTGGGGATTGCACAAGAAA 57.921 45.000 0.00 0.00 0.00 2.52
4718 5912 2.702478 TGATTTTGTGGGGATTGCACAA 59.298 40.909 0.00 0.00 37.09 3.33
4720 5914 2.036992 TGTGATTTTGTGGGGATTGCAC 59.963 45.455 0.00 0.00 0.00 4.57
4760 5954 3.797039 TCACACTGGCATGCTTAGATAC 58.203 45.455 23.12 5.38 0.00 2.24
4762 5956 3.012518 GTTCACACTGGCATGCTTAGAT 58.987 45.455 23.12 11.68 0.00 1.98
4767 5961 0.109153 TGAGTTCACACTGGCATGCT 59.891 50.000 18.92 0.00 31.22 3.79
4773 5967 4.690748 ACAAATACGATGAGTTCACACTGG 59.309 41.667 0.00 0.00 31.22 4.00
4784 5978 8.541133 TGTATGTTGAAGAACAAATACGATGA 57.459 30.769 0.00 0.00 45.23 2.92
4799 5993 4.034163 TCGTCGCTTTGTTTGTATGTTGAA 59.966 37.500 0.00 0.00 0.00 2.69
4804 5998 7.692291 AGATTTATTCGTCGCTTTGTTTGTATG 59.308 33.333 0.00 0.00 0.00 2.39
4811 6005 8.425491 CGATATTAGATTTATTCGTCGCTTTGT 58.575 33.333 0.00 0.00 0.00 2.83
4820 6014 7.812309 TCACCAGCGATATTAGATTTATTCG 57.188 36.000 0.00 0.00 0.00 3.34
4844 6038 7.946219 TCAAGTAGCCAATGATAAATGGATCAT 59.054 33.333 0.00 0.00 46.35 2.45
4859 6053 5.864418 AGACCGTAATATCAAGTAGCCAA 57.136 39.130 0.00 0.00 0.00 4.52
4860 6054 5.048224 GCTAGACCGTAATATCAAGTAGCCA 60.048 44.000 0.00 0.00 0.00 4.75
4864 6058 6.066690 ACTGGCTAGACCGTAATATCAAGTA 58.933 40.000 3.17 0.00 43.94 2.24
4865 6059 4.894114 ACTGGCTAGACCGTAATATCAAGT 59.106 41.667 3.17 0.00 43.94 3.16
4886 6276 4.202461 TGGAGCAGTTTTGAACCTGATACT 60.202 41.667 0.00 0.00 0.00 2.12
4888 6278 4.326826 CTGGAGCAGTTTTGAACCTGATA 58.673 43.478 0.00 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.