Multiple sequence alignment - TraesCS6B01G177900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G177900 chr6B 100.000 9109 0 0 1 9109 196479565 196488673 0.000000e+00 16822.0
1 TraesCS6B01G177900 chr6B 98.559 5205 71 4 1 5204 375646156 375640955 0.000000e+00 9193.0
2 TraesCS6B01G177900 chr6B 97.752 3648 71 5 5200 8838 375640924 375637279 0.000000e+00 6272.0
3 TraesCS6B01G177900 chr6B 98.200 3056 46 7 2152 5204 710549647 710546598 0.000000e+00 5330.0
4 TraesCS6B01G177900 chr6B 97.962 2601 27 4 2529 5129 393070785 393073359 0.000000e+00 4486.0
5 TraesCS6B01G177900 chr6B 98.305 2537 42 1 1 2536 393067053 393069589 0.000000e+00 4446.0
6 TraesCS6B01G177900 chr6B 95.872 2447 79 8 6400 8837 55867762 55870195 0.000000e+00 3940.0
7 TraesCS6B01G177900 chr6B 97.918 1489 26 4 7354 8838 393090021 393091508 0.000000e+00 2573.0
8 TraesCS6B01G177900 chr6B 94.526 274 14 1 8835 9107 73550163 73550436 1.090000e-113 422.0
9 TraesCS6B01G177900 chr6B 83.929 336 36 7 1825 2144 9098724 9098391 1.150000e-78 305.0
10 TraesCS6B01G177900 chr5B 97.533 3648 78 6 5200 8837 446178010 446174365 0.000000e+00 6228.0
11 TraesCS6B01G177900 chr5B 97.622 2523 51 6 2683 5204 446180555 446178041 0.000000e+00 4318.0
12 TraesCS6B01G177900 chr2B 97.300 3667 69 8 5200 8838 779304243 779307907 0.000000e+00 6196.0
13 TraesCS6B01G177900 chr2B 95.900 2073 44 10 1 2034 706087676 706089746 0.000000e+00 3319.0
14 TraesCS6B01G177900 chr2B 88.176 2292 224 22 6575 8837 2003246 2000973 0.000000e+00 2687.0
15 TraesCS6B01G177900 chr2B 98.361 671 10 1 4535 5204 779303542 779304212 0.000000e+00 1177.0
16 TraesCS6B01G177900 chr2B 94.526 274 14 1 8835 9107 15590536 15590809 1.090000e-113 422.0
17 TraesCS6B01G177900 chr7B 96.383 3649 117 11 5200 8838 411607078 411610721 0.000000e+00 5993.0
18 TraesCS6B01G177900 chr7B 97.328 1160 26 3 4049 5204 411605889 411607047 0.000000e+00 1965.0
19 TraesCS6B01G177900 chr7B 94.928 276 13 1 8835 9109 683158904 683159179 1.820000e-116 431.0
20 TraesCS6B01G177900 chr1B 97.257 3391 74 9 5458 8836 586566841 586570224 0.000000e+00 5729.0
21 TraesCS6B01G177900 chr1B 97.158 3132 73 8 5719 8839 12716879 12713753 0.000000e+00 5276.0
22 TraesCS6B01G177900 chr1B 97.575 2227 44 4 2449 4675 586557560 586559776 0.000000e+00 3805.0
23 TraesCS6B01G177900 chr1B 97.331 1761 32 7 695 2454 586551607 586553353 0.000000e+00 2977.0
24 TraesCS6B01G177900 chr1B 88.967 426 40 1 7006 7424 30526386 30526811 3.770000e-143 520.0
25 TraesCS6B01G177900 chr1B 94.928 276 13 1 8835 9109 246420409 246420684 1.820000e-116 431.0
26 TraesCS6B01G177900 chr1B 86.058 208 13 5 695 902 12717068 12716877 9.270000e-50 209.0
27 TraesCS6B01G177900 chr7D 93.031 3659 215 17 5200 8838 32519706 32516068 0.000000e+00 5308.0
28 TraesCS6B01G177900 chr7D 93.004 3659 217 17 5200 8839 625869185 625872823 0.000000e+00 5302.0
29 TraesCS6B01G177900 chr7D 93.516 910 42 8 3062 3969 32521925 32521031 0.000000e+00 1338.0
30 TraesCS6B01G177900 chr7D 87.962 839 71 6 9 823 32522756 32521924 0.000000e+00 963.0
31 TraesCS6B01G177900 chr7D 87.947 838 70 6 9 820 625865959 625866791 0.000000e+00 959.0
32 TraesCS6B01G177900 chr7D 87.843 839 73 5 9 823 485666419 485665586 0.000000e+00 957.0
33 TraesCS6B01G177900 chr7D 96.409 557 20 0 4648 5204 32520293 32519737 0.000000e+00 918.0
34 TraesCS6B01G177900 chr7D 86.754 687 60 10 1 663 26855737 26856416 0.000000e+00 736.0
35 TraesCS6B01G177900 chr7D 86.608 687 61 9 1 663 534150622 534151301 0.000000e+00 730.0
36 TraesCS6B01G177900 chr7D 86.232 690 64 10 1 666 79090883 79090201 0.000000e+00 719.0
37 TraesCS6B01G177900 chr5D 92.545 3662 229 19 5200 8837 524005408 524009049 0.000000e+00 5210.0
38 TraesCS6B01G177900 chr5D 88.441 571 41 7 277 823 182588847 182588278 0.000000e+00 665.0
39 TraesCS6B01G177900 chr2D 92.518 3662 207 30 5197 8840 97593676 97597288 0.000000e+00 5182.0
40 TraesCS6B01G177900 chr2D 95.290 276 12 1 8835 9109 348937034 348937309 3.910000e-118 436.0
41 TraesCS6B01G177900 chr2D 94.565 276 14 1 8835 9109 38494968 38495243 8.450000e-115 425.0
42 TraesCS6B01G177900 chr1A 92.192 3650 233 21 5200 8838 379475191 379478799 0.000000e+00 5114.0
43 TraesCS6B01G177900 chr1A 92.585 917 63 5 3054 3967 379472351 379473265 0.000000e+00 1312.0
44 TraesCS6B01G177900 chr1A 87.216 837 76 11 9 820 434042210 434043040 0.000000e+00 924.0
45 TraesCS6B01G177900 chr1A 94.643 56 3 0 3974 4029 434043971 434044026 4.530000e-13 87.9
46 TraesCS6B01G177900 chr6D 93.495 2398 122 12 5200 7580 62080872 62078492 0.000000e+00 3533.0
47 TraesCS6B01G177900 chr6D 92.857 910 49 7 3062 3969 62083094 62082199 0.000000e+00 1306.0
48 TraesCS6B01G177900 chr6D 96.589 557 19 0 4648 5204 62081459 62080903 0.000000e+00 924.0
49 TraesCS6B01G177900 chr6D 93.347 481 25 2 4178 4651 54816047 54816527 0.000000e+00 704.0
50 TraesCS6B01G177900 chr6D 92.931 481 27 2 4178 4651 156017551 156017071 0.000000e+00 693.0
51 TraesCS6B01G177900 chr6D 86.012 336 29 7 1825 2144 3819329 3818996 2.440000e-90 344.0
52 TraesCS6B01G177900 chr6D 83.279 305 26 8 1860 2144 2834643 2834344 3.260000e-64 257.0
53 TraesCS6B01G177900 chr2A 93.893 917 50 6 3054 3967 90615991 90615078 0.000000e+00 1378.0
54 TraesCS6B01G177900 chr2A 87.619 840 73 14 9 823 743400213 743399380 0.000000e+00 946.0
55 TraesCS6B01G177900 chr2A 96.409 557 20 0 4648 5204 743397707 743397151 0.000000e+00 918.0
56 TraesCS6B01G177900 chr2A 96.226 53 2 0 3977 4029 743398390 743398338 4.530000e-13 87.9
57 TraesCS6B01G177900 chr3A 87.843 839 72 11 9 823 468239323 468238491 0.000000e+00 957.0
58 TraesCS6B01G177900 chr3A 90.852 481 37 4 4178 4651 500017623 500018103 9.970000e-179 638.0
59 TraesCS6B01G177900 chr3A 94.737 57 2 1 3977 4033 468237539 468237484 4.530000e-13 87.9
60 TraesCS6B01G177900 chr3A 87.654 81 3 3 3978 4058 723997291 723997218 4.530000e-13 87.9
61 TraesCS6B01G177900 chr3A 97.059 34 1 0 4049 4082 723997146 723997113 3.550000e-04 58.4
62 TraesCS6B01G177900 chr4A 87.575 837 73 13 9 820 402275954 402276784 0.000000e+00 941.0
63 TraesCS6B01G177900 chr4B 95.290 276 12 1 8835 9109 612828469 612828194 3.910000e-118 436.0
64 TraesCS6B01G177900 chr4B 94.565 276 14 1 8835 9109 219453174 219452899 8.450000e-115 425.0
65 TraesCS6B01G177900 chr3D 94.928 276 13 1 8835 9109 12173962 12174237 1.820000e-116 431.0
66 TraesCS6B01G177900 chr6A 85.714 336 29 12 1825 2144 3689456 3689788 4.070000e-88 337.0
67 TraesCS6B01G177900 chr6A 86.486 111 10 4 1961 2067 1816390 1816281 5.780000e-22 117.0
68 TraesCS6B01G177900 chr6A 92.958 71 5 0 1831 1901 1816463 1816393 4.500000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G177900 chr6B 196479565 196488673 9108 False 16822.000000 16822 100.000000 1 9109 1 chr6B.!!$F3 9108
1 TraesCS6B01G177900 chr6B 375637279 375646156 8877 True 7732.500000 9193 98.155500 1 8838 2 chr6B.!!$R3 8837
2 TraesCS6B01G177900 chr6B 710546598 710549647 3049 True 5330.000000 5330 98.200000 2152 5204 1 chr6B.!!$R2 3052
3 TraesCS6B01G177900 chr6B 393067053 393073359 6306 False 4466.000000 4486 98.133500 1 5129 2 chr6B.!!$F5 5128
4 TraesCS6B01G177900 chr6B 55867762 55870195 2433 False 3940.000000 3940 95.872000 6400 8837 1 chr6B.!!$F1 2437
5 TraesCS6B01G177900 chr6B 393090021 393091508 1487 False 2573.000000 2573 97.918000 7354 8838 1 chr6B.!!$F4 1484
6 TraesCS6B01G177900 chr5B 446174365 446180555 6190 True 5273.000000 6228 97.577500 2683 8837 2 chr5B.!!$R1 6154
7 TraesCS6B01G177900 chr2B 779303542 779307907 4365 False 3686.500000 6196 97.830500 4535 8838 2 chr2B.!!$F3 4303
8 TraesCS6B01G177900 chr2B 706087676 706089746 2070 False 3319.000000 3319 95.900000 1 2034 1 chr2B.!!$F2 2033
9 TraesCS6B01G177900 chr2B 2000973 2003246 2273 True 2687.000000 2687 88.176000 6575 8837 1 chr2B.!!$R1 2262
10 TraesCS6B01G177900 chr7B 411605889 411610721 4832 False 3979.000000 5993 96.855500 4049 8838 2 chr7B.!!$F2 4789
11 TraesCS6B01G177900 chr1B 586566841 586570224 3383 False 5729.000000 5729 97.257000 5458 8836 1 chr1B.!!$F5 3378
12 TraesCS6B01G177900 chr1B 586557560 586559776 2216 False 3805.000000 3805 97.575000 2449 4675 1 chr1B.!!$F4 2226
13 TraesCS6B01G177900 chr1B 586551607 586553353 1746 False 2977.000000 2977 97.331000 695 2454 1 chr1B.!!$F3 1759
14 TraesCS6B01G177900 chr1B 12713753 12717068 3315 True 2742.500000 5276 91.608000 695 8839 2 chr1B.!!$R1 8144
15 TraesCS6B01G177900 chr7D 625865959 625872823 6864 False 3130.500000 5302 90.475500 9 8839 2 chr7D.!!$F3 8830
16 TraesCS6B01G177900 chr7D 32516068 32522756 6688 True 2131.750000 5308 92.729500 9 8838 4 chr7D.!!$R3 8829
17 TraesCS6B01G177900 chr7D 485665586 485666419 833 True 957.000000 957 87.843000 9 823 1 chr7D.!!$R2 814
18 TraesCS6B01G177900 chr7D 26855737 26856416 679 False 736.000000 736 86.754000 1 663 1 chr7D.!!$F1 662
19 TraesCS6B01G177900 chr7D 534150622 534151301 679 False 730.000000 730 86.608000 1 663 1 chr7D.!!$F2 662
20 TraesCS6B01G177900 chr7D 79090201 79090883 682 True 719.000000 719 86.232000 1 666 1 chr7D.!!$R1 665
21 TraesCS6B01G177900 chr5D 524005408 524009049 3641 False 5210.000000 5210 92.545000 5200 8837 1 chr5D.!!$F1 3637
22 TraesCS6B01G177900 chr5D 182588278 182588847 569 True 665.000000 665 88.441000 277 823 1 chr5D.!!$R1 546
23 TraesCS6B01G177900 chr2D 97593676 97597288 3612 False 5182.000000 5182 92.518000 5197 8840 1 chr2D.!!$F2 3643
24 TraesCS6B01G177900 chr1A 379472351 379478799 6448 False 3213.000000 5114 92.388500 3054 8838 2 chr1A.!!$F1 5784
25 TraesCS6B01G177900 chr1A 434042210 434044026 1816 False 505.950000 924 90.929500 9 4029 2 chr1A.!!$F2 4020
26 TraesCS6B01G177900 chr6D 62078492 62083094 4602 True 1921.000000 3533 94.313667 3062 7580 3 chr6D.!!$R4 4518
27 TraesCS6B01G177900 chr2A 90615078 90615991 913 True 1378.000000 1378 93.893000 3054 3967 1 chr2A.!!$R1 913
28 TraesCS6B01G177900 chr2A 743397151 743400213 3062 True 650.633333 946 93.418000 9 5204 3 chr2A.!!$R2 5195
29 TraesCS6B01G177900 chr3A 468237484 468239323 1839 True 522.450000 957 91.290000 9 4033 2 chr3A.!!$R1 4024
30 TraesCS6B01G177900 chr4A 402275954 402276784 830 False 941.000000 941 87.575000 9 820 1 chr4A.!!$F1 811

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
183 184 2.037511 CCAACAATTCACCAAGGCACAT 59.962 45.455 0.00 0.00 0.00 3.21 F
1482 1526 0.553612 AAGGGGGAGAAGCAAGGGAT 60.554 55.000 0.00 0.00 0.00 3.85 F
1629 1673 1.021390 CGATGCGCCAATAGGGATCC 61.021 60.000 4.18 1.92 40.01 3.36 F
1806 1850 2.280797 TGGGACGAGCACAACAGC 60.281 61.111 0.00 0.00 0.00 4.40 F
4491 7084 4.005650 CAGAGCAGAGCATTCAGGTTTAA 58.994 43.478 0.00 0.00 0.00 1.52 F
4670 7832 2.506231 TGTCTGGTTTACCCACACAAGA 59.494 45.455 0.00 0.00 38.95 3.02 F
6453 9654 0.622136 TCAGCCAGCAGGTCAATGAT 59.378 50.000 0.00 0.00 37.19 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1743 1787 1.305219 TAACGGCAAGGCACATGAGC 61.305 55.000 6.57 6.57 0.00 4.26 R
2565 3813 8.585471 TCATGGCAAAATCTAGAGAAAATTCT 57.415 30.769 0.00 0.00 41.00 2.40 R
4491 7084 5.529581 TCAAATGCAATGCAGATGATGAT 57.470 34.783 14.98 0.00 43.65 2.45 R
4670 7832 5.163622 CCTCCGTAAAATTCATCATTGTGCT 60.164 40.000 0.00 0.00 0.00 4.40 R
6116 9313 0.445043 GAATAACACGGTCCAACGCC 59.555 55.000 0.00 0.00 37.37 5.68 R
7192 10416 1.069204 GGACTCATCAGCGAAGGCATA 59.931 52.381 0.00 0.00 43.41 3.14 R
9043 12318 0.035152 ACAGATGGCAGCCAATCGAA 60.035 50.000 20.84 0.00 36.95 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.628630 AATATGAGATCGAGACTGACATAGAA 57.371 34.615 0.00 0.00 0.00 2.10
183 184 2.037511 CCAACAATTCACCAAGGCACAT 59.962 45.455 0.00 0.00 0.00 3.21
740 783 3.713858 TTGACGACGAGAACCTTACAA 57.286 42.857 0.00 0.00 0.00 2.41
874 918 6.380274 AGACCCGTAATTTAGAATCTCTGTGA 59.620 38.462 0.00 0.00 0.00 3.58
1334 1378 2.825836 GATGCGCCCACCTCCAAG 60.826 66.667 4.18 0.00 0.00 3.61
1482 1526 0.553612 AAGGGGGAGAAGCAAGGGAT 60.554 55.000 0.00 0.00 0.00 3.85
1629 1673 1.021390 CGATGCGCCAATAGGGATCC 61.021 60.000 4.18 1.92 40.01 3.36
1806 1850 2.280797 TGGGACGAGCACAACAGC 60.281 61.111 0.00 0.00 0.00 4.40
4491 7084 4.005650 CAGAGCAGAGCATTCAGGTTTAA 58.994 43.478 0.00 0.00 0.00 1.52
4670 7832 2.506231 TGTCTGGTTTACCCACACAAGA 59.494 45.455 0.00 0.00 38.95 3.02
5092 8254 4.275662 TGCTTTCGTTTACATTTGTGTCG 58.724 39.130 0.00 0.00 0.00 4.35
5256 8453 5.221130 GGTACAGTAGGAATGAACTATCGC 58.779 45.833 0.00 0.00 0.00 4.58
5484 8681 2.642171 TGGGACCTGGAAGATACACT 57.358 50.000 0.00 0.00 34.07 3.55
5565 8762 4.417437 ACTCTAAGCTCCACTTACAAGGA 58.583 43.478 0.00 0.00 39.97 3.36
5582 8779 6.403866 ACAAGGAATACAAAACAGATGCAA 57.596 33.333 0.00 0.00 0.00 4.08
5980 9177 7.238514 AGCCAGATTGTATTACTCTATGGGAAT 59.761 37.037 10.07 0.00 0.00 3.01
6285 9486 5.812127 GCAGAAAAACAATGTTTTCCAGACT 59.188 36.000 22.34 13.97 44.93 3.24
6453 9654 0.622136 TCAGCCAGCAGGTCAATGAT 59.378 50.000 0.00 0.00 37.19 2.45
6837 10056 7.817440 ACATCTAGTCCTAATAAGACTCCAGA 58.183 38.462 0.00 0.00 43.48 3.86
6957 10178 5.048504 TCTCTTCATGTTCACCTGCATTTTC 60.049 40.000 0.00 0.00 0.00 2.29
6961 10182 5.069318 TCATGTTCACCTGCATTTTCTACA 58.931 37.500 0.00 0.00 0.00 2.74
7038 10262 4.142816 GCTGCATCGAGTCACAACTTAAAT 60.143 41.667 0.00 0.00 35.28 1.40
7187 10411 3.741249 GAGCAGGATGTCATGATCATGT 58.259 45.455 30.01 15.18 41.92 3.21
7192 10416 2.615447 GGATGTCATGATCATGTGCGTT 59.385 45.455 30.01 17.16 39.72 4.84
7333 10565 1.037493 TAATCGTCGGCCTATGCTGT 58.963 50.000 0.00 0.00 44.62 4.40
7466 10722 6.051179 AGGATGTTAGAACCTAACTGGAAC 57.949 41.667 15.29 4.82 39.71 3.62
7516 10772 3.030291 TGCTCTGTGTTTTGGGTGATTT 58.970 40.909 0.00 0.00 0.00 2.17
8262 11535 7.595819 ACCTATTTGTCACCATCAAAAGAAA 57.404 32.000 0.00 0.00 38.11 2.52
8392 11666 4.082300 TGTTGCCATAGTTTATTGCCACAG 60.082 41.667 0.00 0.00 30.78 3.66
8476 11750 4.757019 TGCCACAATTGATTATTGCCAT 57.243 36.364 13.59 0.00 46.21 4.40
8539 11813 4.022416 GGTTGTTGCCACAAATGTCTATCA 60.022 41.667 4.72 0.00 44.72 2.15
8775 12050 3.633525 TCGTGGCAATAGGTACTTATCGT 59.366 43.478 0.00 0.00 41.75 3.73
8840 12115 1.683917 CCCGGATCCTTGTAGTGAGAG 59.316 57.143 10.75 0.00 0.00 3.20
8841 12116 1.683917 CCGGATCCTTGTAGTGAGAGG 59.316 57.143 10.75 0.00 0.00 3.69
8842 12117 2.656002 CGGATCCTTGTAGTGAGAGGA 58.344 52.381 10.75 0.00 43.29 3.71
8843 12118 2.621055 CGGATCCTTGTAGTGAGAGGAG 59.379 54.545 10.75 0.00 42.47 3.69
8844 12119 2.962421 GGATCCTTGTAGTGAGAGGAGG 59.038 54.545 3.84 0.00 42.47 4.30
8845 12120 3.628769 GGATCCTTGTAGTGAGAGGAGGT 60.629 52.174 3.84 0.00 42.47 3.85
8846 12121 3.544698 TCCTTGTAGTGAGAGGAGGTT 57.455 47.619 0.00 0.00 34.74 3.50
8847 12122 3.165875 TCCTTGTAGTGAGAGGAGGTTG 58.834 50.000 0.00 0.00 34.74 3.77
8848 12123 2.354203 CCTTGTAGTGAGAGGAGGTTGC 60.354 54.545 0.00 0.00 32.11 4.17
8849 12124 0.888619 TGTAGTGAGAGGAGGTTGCG 59.111 55.000 0.00 0.00 0.00 4.85
8850 12125 0.458716 GTAGTGAGAGGAGGTTGCGC 60.459 60.000 0.00 0.00 0.00 6.09
8851 12126 0.898326 TAGTGAGAGGAGGTTGCGCA 60.898 55.000 5.66 5.66 0.00 6.09
8852 12127 1.301716 GTGAGAGGAGGTTGCGCAA 60.302 57.895 21.02 21.02 0.00 4.85
8853 12128 0.884704 GTGAGAGGAGGTTGCGCAAA 60.885 55.000 26.87 6.26 0.00 3.68
8854 12129 0.036732 TGAGAGGAGGTTGCGCAAAT 59.963 50.000 26.87 17.02 0.00 2.32
8855 12130 1.168714 GAGAGGAGGTTGCGCAAATT 58.831 50.000 26.87 16.12 0.00 1.82
8856 12131 1.131315 GAGAGGAGGTTGCGCAAATTC 59.869 52.381 26.87 23.18 0.00 2.17
8857 12132 0.171231 GAGGAGGTTGCGCAAATTCC 59.829 55.000 31.78 31.78 0.00 3.01
8858 12133 1.215382 GGAGGTTGCGCAAATTCCC 59.785 57.895 30.10 24.54 0.00 3.97
8859 12134 1.250840 GGAGGTTGCGCAAATTCCCT 61.251 55.000 30.10 27.89 0.00 4.20
8860 12135 0.171231 GAGGTTGCGCAAATTCCCTC 59.829 55.000 30.27 30.27 32.45 4.30
8861 12136 1.154035 GGTTGCGCAAATTCCCTCG 60.154 57.895 26.87 0.00 0.00 4.63
8862 12137 1.154035 GTTGCGCAAATTCCCTCGG 60.154 57.895 26.87 0.00 0.00 4.63
8863 12138 1.602323 TTGCGCAAATTCCCTCGGT 60.602 52.632 22.78 0.00 0.00 4.69
8864 12139 1.582610 TTGCGCAAATTCCCTCGGTC 61.583 55.000 22.78 0.00 0.00 4.79
8865 12140 2.038269 GCGCAAATTCCCTCGGTCA 61.038 57.895 0.30 0.00 0.00 4.02
8866 12141 1.982073 GCGCAAATTCCCTCGGTCAG 61.982 60.000 0.30 0.00 0.00 3.51
8867 12142 1.369091 CGCAAATTCCCTCGGTCAGG 61.369 60.000 0.00 0.00 43.01 3.86
8876 12151 3.976339 CTCGGTCAGGATGCCTTAG 57.024 57.895 0.00 0.00 34.76 2.18
8877 12152 1.403814 CTCGGTCAGGATGCCTTAGA 58.596 55.000 0.00 0.00 34.76 2.10
8878 12153 1.967066 CTCGGTCAGGATGCCTTAGAT 59.033 52.381 0.00 0.00 34.76 1.98
8879 12154 2.366916 CTCGGTCAGGATGCCTTAGATT 59.633 50.000 0.00 0.00 34.76 2.40
8880 12155 2.365617 TCGGTCAGGATGCCTTAGATTC 59.634 50.000 0.00 0.00 34.76 2.52
8881 12156 2.366916 CGGTCAGGATGCCTTAGATTCT 59.633 50.000 0.00 0.00 34.76 2.40
8882 12157 3.553922 CGGTCAGGATGCCTTAGATTCTC 60.554 52.174 0.00 0.00 34.76 2.87
8883 12158 3.553922 GGTCAGGATGCCTTAGATTCTCG 60.554 52.174 0.00 0.00 34.76 4.04
8884 12159 2.630098 TCAGGATGCCTTAGATTCTCGG 59.370 50.000 0.00 0.00 34.76 4.63
8885 12160 2.366916 CAGGATGCCTTAGATTCTCGGT 59.633 50.000 0.00 0.00 0.00 4.69
8886 12161 2.366916 AGGATGCCTTAGATTCTCGGTG 59.633 50.000 0.00 0.00 0.00 4.94
8887 12162 2.103263 GGATGCCTTAGATTCTCGGTGT 59.897 50.000 0.00 0.00 0.00 4.16
8888 12163 3.432326 GGATGCCTTAGATTCTCGGTGTT 60.432 47.826 0.00 0.00 0.00 3.32
8889 12164 2.972625 TGCCTTAGATTCTCGGTGTTG 58.027 47.619 0.00 0.00 0.00 3.33
8890 12165 2.565391 TGCCTTAGATTCTCGGTGTTGA 59.435 45.455 0.00 0.00 0.00 3.18
8891 12166 3.197766 TGCCTTAGATTCTCGGTGTTGAT 59.802 43.478 0.00 0.00 0.00 2.57
8892 12167 3.804873 GCCTTAGATTCTCGGTGTTGATC 59.195 47.826 0.00 0.00 0.00 2.92
8893 12168 4.045104 CCTTAGATTCTCGGTGTTGATCG 58.955 47.826 0.00 0.00 0.00 3.69
8894 12169 4.202020 CCTTAGATTCTCGGTGTTGATCGA 60.202 45.833 0.00 0.00 32.48 3.59
8899 12174 1.504900 TCGGTGTTGATCGAGACGG 59.495 57.895 10.59 10.59 29.11 4.79
8900 12175 1.211969 CGGTGTTGATCGAGACGGT 59.788 57.895 9.06 0.00 0.00 4.83
8901 12176 0.388134 CGGTGTTGATCGAGACGGTT 60.388 55.000 9.06 0.00 0.00 4.44
8902 12177 1.347320 GGTGTTGATCGAGACGGTTC 58.653 55.000 4.25 0.00 0.00 3.62
8903 12178 1.067776 GGTGTTGATCGAGACGGTTCT 60.068 52.381 4.25 0.00 33.37 3.01
8904 12179 2.251893 GTGTTGATCGAGACGGTTCTC 58.748 52.381 0.00 0.00 44.50 2.87
8905 12180 1.201647 TGTTGATCGAGACGGTTCTCC 59.798 52.381 0.00 0.00 45.06 3.71
8918 12193 1.602237 TTCTCCGGAGAATGCACCC 59.398 57.895 37.39 0.00 42.06 4.61
8919 12194 2.202932 CTCCGGAGAATGCACCCG 60.203 66.667 28.21 10.56 42.64 5.28
8920 12195 2.682136 TCCGGAGAATGCACCCGA 60.682 61.111 16.93 0.03 45.58 5.14
8921 12196 2.202932 CCGGAGAATGCACCCGAG 60.203 66.667 16.93 6.53 45.58 4.63
8922 12197 2.892425 CGGAGAATGCACCCGAGC 60.892 66.667 11.73 0.00 45.58 5.03
8923 12198 2.586792 GGAGAATGCACCCGAGCT 59.413 61.111 0.00 0.00 34.99 4.09
8924 12199 1.817099 GGAGAATGCACCCGAGCTG 60.817 63.158 0.00 0.00 34.99 4.24
8925 12200 1.219124 GAGAATGCACCCGAGCTGA 59.781 57.895 0.00 0.00 34.99 4.26
8926 12201 0.391661 GAGAATGCACCCGAGCTGAA 60.392 55.000 0.00 0.00 34.99 3.02
8927 12202 0.674895 AGAATGCACCCGAGCTGAAC 60.675 55.000 0.00 0.00 34.99 3.18
8928 12203 1.648467 GAATGCACCCGAGCTGAACC 61.648 60.000 0.00 0.00 34.99 3.62
8929 12204 3.958147 ATGCACCCGAGCTGAACCG 62.958 63.158 0.00 0.00 34.99 4.44
8930 12205 4.681978 GCACCCGAGCTGAACCGT 62.682 66.667 0.00 0.00 0.00 4.83
8931 12206 2.738521 CACCCGAGCTGAACCGTG 60.739 66.667 0.00 0.00 0.00 4.94
8932 12207 3.231736 ACCCGAGCTGAACCGTGT 61.232 61.111 0.00 0.00 0.00 4.49
8933 12208 1.904865 ACCCGAGCTGAACCGTGTA 60.905 57.895 0.00 0.00 0.00 2.90
8934 12209 1.445582 CCCGAGCTGAACCGTGTAC 60.446 63.158 0.00 0.00 0.00 2.90
8935 12210 1.445582 CCGAGCTGAACCGTGTACC 60.446 63.158 0.00 0.00 0.00 3.34
8936 12211 1.445582 CGAGCTGAACCGTGTACCC 60.446 63.158 0.00 0.00 0.00 3.69
8937 12212 1.079336 GAGCTGAACCGTGTACCCC 60.079 63.158 0.00 0.00 0.00 4.95
8938 12213 1.535687 AGCTGAACCGTGTACCCCT 60.536 57.895 0.00 0.00 0.00 4.79
8939 12214 1.125711 AGCTGAACCGTGTACCCCTT 61.126 55.000 0.00 0.00 0.00 3.95
8940 12215 0.953960 GCTGAACCGTGTACCCCTTG 60.954 60.000 0.00 0.00 0.00 3.61
8941 12216 0.953960 CTGAACCGTGTACCCCTTGC 60.954 60.000 0.00 0.00 0.00 4.01
8942 12217 1.673337 GAACCGTGTACCCCTTGCC 60.673 63.158 0.00 0.00 0.00 4.52
8943 12218 2.120737 GAACCGTGTACCCCTTGCCT 62.121 60.000 0.00 0.00 0.00 4.75
8944 12219 0.837260 AACCGTGTACCCCTTGCCTA 60.837 55.000 0.00 0.00 0.00 3.93
8945 12220 0.837260 ACCGTGTACCCCTTGCCTAA 60.837 55.000 0.00 0.00 0.00 2.69
8946 12221 0.544697 CCGTGTACCCCTTGCCTAAT 59.455 55.000 0.00 0.00 0.00 1.73
8947 12222 1.064979 CCGTGTACCCCTTGCCTAATT 60.065 52.381 0.00 0.00 0.00 1.40
8948 12223 2.285977 CGTGTACCCCTTGCCTAATTC 58.714 52.381 0.00 0.00 0.00 2.17
8949 12224 2.093128 CGTGTACCCCTTGCCTAATTCT 60.093 50.000 0.00 0.00 0.00 2.40
8950 12225 3.621461 CGTGTACCCCTTGCCTAATTCTT 60.621 47.826 0.00 0.00 0.00 2.52
8951 12226 4.341487 GTGTACCCCTTGCCTAATTCTTT 58.659 43.478 0.00 0.00 0.00 2.52
8952 12227 4.157840 GTGTACCCCTTGCCTAATTCTTTG 59.842 45.833 0.00 0.00 0.00 2.77
8953 12228 2.820178 ACCCCTTGCCTAATTCTTTGG 58.180 47.619 0.00 0.00 0.00 3.28
8954 12229 2.110578 CCCCTTGCCTAATTCTTTGGG 58.889 52.381 0.00 0.00 36.58 4.12
8959 12234 1.727467 CCTAATTCTTTGGGCGCCG 59.273 57.895 22.54 6.52 0.00 6.46
8960 12235 1.029947 CCTAATTCTTTGGGCGCCGT 61.030 55.000 22.54 0.00 0.00 5.68
8961 12236 0.808755 CTAATTCTTTGGGCGCCGTT 59.191 50.000 22.54 8.60 0.00 4.44
8962 12237 0.523966 TAATTCTTTGGGCGCCGTTG 59.476 50.000 22.54 10.68 0.00 4.10
8963 12238 2.153547 AATTCTTTGGGCGCCGTTGG 62.154 55.000 22.54 11.03 0.00 3.77
8964 12239 3.776347 TTCTTTGGGCGCCGTTGGA 62.776 57.895 22.54 13.34 0.00 3.53
8965 12240 3.061848 CTTTGGGCGCCGTTGGAT 61.062 61.111 22.54 0.00 0.00 3.41
8966 12241 3.340953 CTTTGGGCGCCGTTGGATG 62.341 63.158 22.54 2.54 0.00 3.51
8974 12249 4.856801 CCGTTGGATGCCCCTCGG 62.857 72.222 11.96 11.96 42.64 4.63
8975 12250 3.781307 CGTTGGATGCCCCTCGGA 61.781 66.667 0.00 0.00 35.38 4.55
8976 12251 2.190578 GTTGGATGCCCCTCGGAG 59.809 66.667 0.00 0.00 35.38 4.63
8977 12252 3.089874 TTGGATGCCCCTCGGAGG 61.090 66.667 17.41 17.41 35.38 4.30
8978 12253 3.634157 TTGGATGCCCCTCGGAGGA 62.634 63.158 25.60 5.97 37.67 3.71
8979 12254 3.551407 GGATGCCCCTCGGAGGAC 61.551 72.222 25.60 16.57 37.67 3.85
8980 12255 2.764128 GATGCCCCTCGGAGGACA 60.764 66.667 25.60 21.36 37.67 4.02
8981 12256 3.083997 ATGCCCCTCGGAGGACAC 61.084 66.667 25.60 13.79 37.67 3.67
8982 12257 3.625632 ATGCCCCTCGGAGGACACT 62.626 63.158 25.60 9.94 37.67 3.55
8983 12258 3.003763 GCCCCTCGGAGGACACTT 61.004 66.667 25.60 0.00 37.67 3.16
8984 12259 3.020237 GCCCCTCGGAGGACACTTC 62.020 68.421 25.60 3.87 37.67 3.01
8985 12260 1.609501 CCCCTCGGAGGACACTTCA 60.610 63.158 25.60 0.00 37.67 3.02
8986 12261 1.608717 CCCCTCGGAGGACACTTCAG 61.609 65.000 25.60 5.69 37.67 3.02
8987 12262 0.900647 CCCTCGGAGGACACTTCAGT 60.901 60.000 25.60 0.00 37.67 3.41
8988 12263 1.616187 CCCTCGGAGGACACTTCAGTA 60.616 57.143 25.60 0.00 37.67 2.74
8989 12264 2.168496 CCTCGGAGGACACTTCAGTAA 58.832 52.381 19.57 0.00 37.67 2.24
8990 12265 2.561419 CCTCGGAGGACACTTCAGTAAA 59.439 50.000 19.57 0.00 37.67 2.01
8991 12266 3.195825 CCTCGGAGGACACTTCAGTAAAT 59.804 47.826 19.57 0.00 37.67 1.40
8992 12267 4.322801 CCTCGGAGGACACTTCAGTAAATT 60.323 45.833 19.57 0.00 37.67 1.82
8993 12268 4.817517 TCGGAGGACACTTCAGTAAATTC 58.182 43.478 0.00 0.00 0.00 2.17
8994 12269 3.933332 CGGAGGACACTTCAGTAAATTCC 59.067 47.826 0.00 0.00 0.00 3.01
8995 12270 4.322801 CGGAGGACACTTCAGTAAATTCCT 60.323 45.833 0.00 0.00 0.00 3.36
8996 12271 5.179533 GGAGGACACTTCAGTAAATTCCTC 58.820 45.833 13.20 13.20 40.15 3.71
8997 12272 5.167303 AGGACACTTCAGTAAATTCCTCC 57.833 43.478 0.00 0.00 0.00 4.30
8998 12273 4.846940 AGGACACTTCAGTAAATTCCTCCT 59.153 41.667 0.00 0.00 0.00 3.69
8999 12274 5.310857 AGGACACTTCAGTAAATTCCTCCTT 59.689 40.000 0.00 0.00 0.00 3.36
9000 12275 5.412904 GGACACTTCAGTAAATTCCTCCTTG 59.587 44.000 0.00 0.00 0.00 3.61
9001 12276 6.187727 ACACTTCAGTAAATTCCTCCTTGA 57.812 37.500 0.00 0.00 0.00 3.02
9002 12277 5.998363 ACACTTCAGTAAATTCCTCCTTGAC 59.002 40.000 0.00 0.00 0.00 3.18
9003 12278 5.120830 CACTTCAGTAAATTCCTCCTTGACG 59.879 44.000 0.00 0.00 0.00 4.35
9004 12279 4.202245 TCAGTAAATTCCTCCTTGACGG 57.798 45.455 0.00 0.00 0.00 4.79
9005 12280 3.581332 TCAGTAAATTCCTCCTTGACGGT 59.419 43.478 0.00 0.00 0.00 4.83
9006 12281 3.684788 CAGTAAATTCCTCCTTGACGGTG 59.315 47.826 0.00 0.00 0.00 4.94
9007 12282 1.534729 AAATTCCTCCTTGACGGTGC 58.465 50.000 0.00 0.00 0.00 5.01
9008 12283 0.322546 AATTCCTCCTTGACGGTGCC 60.323 55.000 0.00 0.00 0.00 5.01
9009 12284 2.521958 ATTCCTCCTTGACGGTGCCG 62.522 60.000 9.29 9.29 46.03 5.69
9010 12285 3.691342 CCTCCTTGACGGTGCCGA 61.691 66.667 18.16 0.00 42.83 5.54
9011 12286 2.125912 CTCCTTGACGGTGCCGAG 60.126 66.667 18.16 4.29 42.83 4.63
9012 12287 4.373116 TCCTTGACGGTGCCGAGC 62.373 66.667 18.16 9.17 42.83 5.03
9013 12288 4.680237 CCTTGACGGTGCCGAGCA 62.680 66.667 18.16 11.60 42.83 4.26
9014 12289 2.434884 CTTGACGGTGCCGAGCAT 60.435 61.111 18.16 0.00 41.91 3.79
9015 12290 2.741985 TTGACGGTGCCGAGCATG 60.742 61.111 18.16 0.00 41.91 4.06
9016 12291 3.529341 TTGACGGTGCCGAGCATGT 62.529 57.895 18.16 4.56 41.91 3.21
9017 12292 2.742372 GACGGTGCCGAGCATGTT 60.742 61.111 18.16 0.00 41.91 2.71
9018 12293 2.740714 GACGGTGCCGAGCATGTTC 61.741 63.158 18.16 0.00 41.91 3.18
9019 12294 3.853330 CGGTGCCGAGCATGTTCG 61.853 66.667 23.26 23.26 41.91 3.95
9043 12318 3.069778 GGTCCTTCCGTTGCCTCT 58.930 61.111 0.00 0.00 0.00 3.69
9044 12319 1.375326 GGTCCTTCCGTTGCCTCTT 59.625 57.895 0.00 0.00 0.00 2.85
9045 12320 0.673956 GGTCCTTCCGTTGCCTCTTC 60.674 60.000 0.00 0.00 0.00 2.87
9046 12321 1.014564 GTCCTTCCGTTGCCTCTTCG 61.015 60.000 0.00 0.00 0.00 3.79
9047 12322 1.183030 TCCTTCCGTTGCCTCTTCGA 61.183 55.000 0.00 0.00 0.00 3.71
9048 12323 0.108138 CCTTCCGTTGCCTCTTCGAT 60.108 55.000 0.00 0.00 0.00 3.59
9049 12324 1.676014 CCTTCCGTTGCCTCTTCGATT 60.676 52.381 0.00 0.00 0.00 3.34
9050 12325 1.394917 CTTCCGTTGCCTCTTCGATTG 59.605 52.381 0.00 0.00 0.00 2.67
9051 12326 0.391130 TCCGTTGCCTCTTCGATTGG 60.391 55.000 0.00 0.00 0.00 3.16
9052 12327 1.425428 CGTTGCCTCTTCGATTGGC 59.575 57.895 14.44 14.44 46.26 4.52
9053 12328 1.021390 CGTTGCCTCTTCGATTGGCT 61.021 55.000 19.65 0.00 46.23 4.75
9054 12329 0.449388 GTTGCCTCTTCGATTGGCTG 59.551 55.000 19.65 0.00 46.23 4.85
9055 12330 1.308069 TTGCCTCTTCGATTGGCTGC 61.308 55.000 19.65 0.00 46.23 5.25
9056 12331 2.476320 GCCTCTTCGATTGGCTGCC 61.476 63.158 12.87 12.87 43.05 4.85
9057 12332 1.078214 CCTCTTCGATTGGCTGCCA 60.078 57.895 19.30 19.30 0.00 4.92
9058 12333 0.465097 CCTCTTCGATTGGCTGCCAT 60.465 55.000 24.03 12.65 31.53 4.40
9059 12334 0.942962 CTCTTCGATTGGCTGCCATC 59.057 55.000 24.03 19.24 31.53 3.51
9060 12335 0.543277 TCTTCGATTGGCTGCCATCT 59.457 50.000 24.03 13.23 31.53 2.90
9061 12336 0.661552 CTTCGATTGGCTGCCATCTG 59.338 55.000 24.03 14.63 31.53 2.90
9062 12337 0.035152 TTCGATTGGCTGCCATCTGT 60.035 50.000 24.03 9.12 31.53 3.41
9063 12338 0.745486 TCGATTGGCTGCCATCTGTG 60.745 55.000 24.03 11.01 31.53 3.66
9065 12340 1.380785 ATTGGCTGCCATCTGTGGG 60.381 57.895 24.03 0.00 46.14 4.61
9066 12341 2.159101 ATTGGCTGCCATCTGTGGGT 62.159 55.000 24.03 0.00 46.14 4.51
9067 12342 2.753043 GGCTGCCATCTGTGGGTG 60.753 66.667 15.17 0.00 46.14 4.61
9068 12343 2.034687 GCTGCCATCTGTGGGTGT 59.965 61.111 0.00 0.00 46.14 4.16
9069 12344 2.338015 GCTGCCATCTGTGGGTGTG 61.338 63.158 0.00 0.00 46.14 3.82
9070 12345 2.282391 TGCCATCTGTGGGTGTGC 60.282 61.111 0.00 0.00 46.14 4.57
9071 12346 2.034687 GCCATCTGTGGGTGTGCT 59.965 61.111 0.00 0.00 46.14 4.40
9072 12347 2.338015 GCCATCTGTGGGTGTGCTG 61.338 63.158 0.00 0.00 46.14 4.41
9073 12348 2.338015 CCATCTGTGGGTGTGCTGC 61.338 63.158 0.00 0.00 42.11 5.25
9074 12349 2.034687 ATCTGTGGGTGTGCTGCC 59.965 61.111 0.00 0.00 0.00 4.85
9075 12350 2.832778 ATCTGTGGGTGTGCTGCCA 61.833 57.895 0.00 0.00 0.00 4.92
9076 12351 2.146146 ATCTGTGGGTGTGCTGCCAT 62.146 55.000 0.00 0.00 0.00 4.40
9077 12352 2.282391 TGTGGGTGTGCTGCCATC 60.282 61.111 0.00 0.00 0.00 3.51
9078 12353 2.282391 GTGGGTGTGCTGCCATCA 60.282 61.111 0.00 0.00 0.00 3.07
9079 12354 1.679977 GTGGGTGTGCTGCCATCAT 60.680 57.895 0.00 0.00 0.00 2.45
9080 12355 1.378911 TGGGTGTGCTGCCATCATC 60.379 57.895 0.00 0.00 0.00 2.92
9081 12356 2.475466 GGGTGTGCTGCCATCATCG 61.475 63.158 0.00 0.00 0.00 3.84
9082 12357 2.475466 GGTGTGCTGCCATCATCGG 61.475 63.158 0.00 0.00 0.00 4.18
9083 12358 1.746615 GTGTGCTGCCATCATCGGT 60.747 57.895 0.00 0.00 0.00 4.69
9084 12359 1.746239 TGTGCTGCCATCATCGGTG 60.746 57.895 0.00 0.00 0.00 4.94
9085 12360 2.124612 TGCTGCCATCATCGGTGG 60.125 61.111 0.00 0.00 39.80 4.61
9086 12361 2.124570 GCTGCCATCATCGGTGGT 60.125 61.111 0.00 0.00 39.01 4.16
9087 12362 2.475466 GCTGCCATCATCGGTGGTG 61.475 63.158 0.59 0.59 39.01 4.17
9091 12366 4.565360 CATCATCGGTGGTGGCAT 57.435 55.556 0.00 0.00 32.64 4.40
9092 12367 2.324215 CATCATCGGTGGTGGCATC 58.676 57.895 0.00 0.00 32.64 3.91
9093 12368 1.149174 ATCATCGGTGGTGGCATCC 59.851 57.895 0.00 0.00 0.00 3.51
9094 12369 1.348008 ATCATCGGTGGTGGCATCCT 61.348 55.000 0.00 0.00 0.00 3.24
9095 12370 1.077501 CATCGGTGGTGGCATCCTT 60.078 57.895 0.00 0.00 0.00 3.36
9096 12371 1.077501 ATCGGTGGTGGCATCCTTG 60.078 57.895 0.00 0.00 0.00 3.61
9097 12372 2.556840 ATCGGTGGTGGCATCCTTGG 62.557 60.000 0.00 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
264 267 0.544595 AACCCCTCCGCTGTAACTCT 60.545 55.000 0.00 0.00 0.00 3.24
266 269 0.834687 TCAACCCCTCCGCTGTAACT 60.835 55.000 0.00 0.00 0.00 2.24
740 783 3.528370 CGATCCGACGCCCTTCCT 61.528 66.667 0.00 0.00 0.00 3.36
822 866 7.592736 TCAGGAGTTAGGAGTTATAGATTCCA 58.407 38.462 0.00 0.00 36.64 3.53
843 887 7.048512 AGATTCTAAATTACGGGTCTTTCAGG 58.951 38.462 0.00 0.00 0.00 3.86
874 918 4.009675 ACATTCGTGCCTGTAATCAATGT 58.990 39.130 0.00 0.00 0.00 2.71
1201 1245 1.369839 CGAGGAGCTGAGTCGTAGCA 61.370 60.000 0.00 0.00 43.53 3.49
1482 1526 1.592400 CCGCCTCCTCGAACAGTACA 61.592 60.000 0.00 0.00 0.00 2.90
1743 1787 1.305219 TAACGGCAAGGCACATGAGC 61.305 55.000 6.57 6.57 0.00 4.26
1955 1999 3.199946 AGAAACCTGAAGTGAACACCAGA 59.800 43.478 10.96 0.00 0.00 3.86
2565 3813 8.585471 TCATGGCAAAATCTAGAGAAAATTCT 57.415 30.769 0.00 0.00 41.00 2.40
4491 7084 5.529581 TCAAATGCAATGCAGATGATGAT 57.470 34.783 14.98 0.00 43.65 2.45
4670 7832 5.163622 CCTCCGTAAAATTCATCATTGTGCT 60.164 40.000 0.00 0.00 0.00 4.40
5092 8254 8.887717 ACTCAGCATTAGATTGTAAGAAATGAC 58.112 33.333 0.00 0.00 30.77 3.06
5125 8287 6.400568 ACAGCCCAAATCATACAAGAAAATG 58.599 36.000 0.00 0.00 0.00 2.32
5126 8288 6.610075 ACAGCCCAAATCATACAAGAAAAT 57.390 33.333 0.00 0.00 0.00 1.82
5256 8453 1.336887 ACCACGTCATCCTTGAACGAG 60.337 52.381 0.71 0.00 32.48 4.18
5504 8701 9.599866 TCTATATCTCTCTTTCGCAATTTTGAA 57.400 29.630 0.00 0.00 0.00 2.69
5565 8762 8.246180 CCAATCTAGTTGCATCTGTTTTGTATT 58.754 33.333 7.57 0.00 36.46 1.89
5831 9028 5.009010 TCGTACCTTCTCGAAACTAACTTGT 59.991 40.000 0.00 0.00 33.13 3.16
5843 9040 3.505464 AATTGGACTCGTACCTTCTCG 57.495 47.619 0.00 0.00 0.00 4.04
5980 9177 4.895889 TGTTCCATTGTTTGTATGGGTGAA 59.104 37.500 0.00 0.00 42.32 3.18
5988 9185 6.773200 TGTTAGACCATGTTCCATTGTTTGTA 59.227 34.615 0.00 0.00 0.00 2.41
6116 9313 0.445043 GAATAACACGGTCCAACGCC 59.555 55.000 0.00 0.00 37.37 5.68
6165 9366 3.947834 AGGAACAATTATAGGTGCAGCAC 59.052 43.478 17.97 17.97 0.00 4.40
6285 9486 4.415881 TTCCAGAGTGTCTTTGTAAGCA 57.584 40.909 0.00 0.00 0.00 3.91
6453 9654 7.116376 CGTTCAGCTTGTAGTTGATCTTCTAAA 59.884 37.037 0.00 0.00 35.39 1.85
6837 10056 2.717639 AATAGCAGTCGGCCTTGAAT 57.282 45.000 0.00 0.00 46.50 2.57
6957 10178 9.499479 AGCTAATTATGAAGACCAATGATGTAG 57.501 33.333 0.00 0.00 0.00 2.74
6961 10182 8.381636 AGCTAGCTAATTATGAAGACCAATGAT 58.618 33.333 17.69 0.00 0.00 2.45
7038 10262 9.502091 CCCTAGCTAGCACATATTTGTATTTTA 57.498 33.333 18.83 0.00 33.76 1.52
7192 10416 1.069204 GGACTCATCAGCGAAGGCATA 59.931 52.381 0.00 0.00 43.41 3.14
7333 10565 6.630863 CGGGTACTTGGTATCCTCAATAACAA 60.631 42.308 5.60 0.00 43.69 2.83
7516 10772 6.294843 GCTTTTAACTTAATGGTGTTGGGCTA 60.295 38.462 0.00 0.00 0.00 3.93
7951 11223 7.282224 GGTTGTGGTAATAGTCTATTGCAATCA 59.718 37.037 16.86 12.42 33.18 2.57
8262 11535 4.691685 TCGTAACAGGAAATTGCAACGTAT 59.308 37.500 0.00 0.00 33.67 3.06
8392 11666 3.472652 TGTTGCCACGATCCAATATACC 58.527 45.455 0.00 0.00 0.00 2.73
8476 11750 1.075542 CGTGGCGCATTACTCTTTCA 58.924 50.000 10.83 0.00 0.00 2.69
8539 11813 3.958147 TGTGGATACTGATATGTCGTGGT 59.042 43.478 0.00 0.00 37.61 4.16
8813 12088 4.831155 CACTACAAGGATCCGGGTCTATTA 59.169 45.833 15.87 0.41 0.00 0.98
8840 12115 1.215382 GGGAATTTGCGCAACCTCC 59.785 57.895 29.44 29.44 0.00 4.30
8841 12116 0.171231 GAGGGAATTTGCGCAACCTC 59.829 55.000 30.27 30.27 37.88 3.85
8842 12117 1.586154 CGAGGGAATTTGCGCAACCT 61.586 55.000 25.15 25.15 0.00 3.50
8843 12118 1.154035 CGAGGGAATTTGCGCAACC 60.154 57.895 24.99 20.65 0.00 3.77
8844 12119 1.154035 CCGAGGGAATTTGCGCAAC 60.154 57.895 24.99 11.82 0.00 4.17
8845 12120 1.582610 GACCGAGGGAATTTGCGCAA 61.583 55.000 21.02 21.02 0.00 4.85
8846 12121 2.033448 ACCGAGGGAATTTGCGCA 59.967 55.556 5.66 5.66 0.00 6.09
8847 12122 1.982073 CTGACCGAGGGAATTTGCGC 61.982 60.000 0.00 0.00 0.00 6.09
8848 12123 1.369091 CCTGACCGAGGGAATTTGCG 61.369 60.000 0.00 0.00 38.36 4.85
8849 12124 0.035439 TCCTGACCGAGGGAATTTGC 60.035 55.000 0.00 0.00 43.06 3.68
8850 12125 2.292267 CATCCTGACCGAGGGAATTTG 58.708 52.381 0.00 0.00 43.06 2.32
8851 12126 1.408822 GCATCCTGACCGAGGGAATTT 60.409 52.381 0.00 0.00 43.06 1.82
8852 12127 0.181350 GCATCCTGACCGAGGGAATT 59.819 55.000 0.00 0.00 43.06 2.17
8853 12128 1.700042 GGCATCCTGACCGAGGGAAT 61.700 60.000 0.00 0.00 43.06 3.01
8854 12129 2.367202 GGCATCCTGACCGAGGGAA 61.367 63.158 0.00 0.00 43.06 3.97
8855 12130 2.764128 GGCATCCTGACCGAGGGA 60.764 66.667 0.00 0.00 43.06 4.20
8856 12131 1.048724 TAAGGCATCCTGACCGAGGG 61.049 60.000 0.00 0.00 43.06 4.30
8857 12132 0.390860 CTAAGGCATCCTGACCGAGG 59.609 60.000 0.00 0.00 44.45 4.63
8858 12133 1.403814 TCTAAGGCATCCTGACCGAG 58.596 55.000 0.00 0.00 32.13 4.63
8859 12134 2.088104 ATCTAAGGCATCCTGACCGA 57.912 50.000 0.00 0.00 32.13 4.69
8860 12135 2.366916 AGAATCTAAGGCATCCTGACCG 59.633 50.000 0.00 0.00 32.13 4.79
8861 12136 3.553922 CGAGAATCTAAGGCATCCTGACC 60.554 52.174 0.00 0.00 32.13 4.02
8862 12137 3.553922 CCGAGAATCTAAGGCATCCTGAC 60.554 52.174 0.00 0.00 32.13 3.51
8863 12138 2.630098 CCGAGAATCTAAGGCATCCTGA 59.370 50.000 0.00 0.00 32.13 3.86
8864 12139 2.366916 ACCGAGAATCTAAGGCATCCTG 59.633 50.000 4.45 0.00 32.13 3.86
8865 12140 2.366916 CACCGAGAATCTAAGGCATCCT 59.633 50.000 4.45 0.00 33.87 3.24
8866 12141 2.103263 ACACCGAGAATCTAAGGCATCC 59.897 50.000 4.45 0.00 0.00 3.51
8867 12142 3.460857 ACACCGAGAATCTAAGGCATC 57.539 47.619 4.45 0.00 0.00 3.91
8868 12143 3.197766 TCAACACCGAGAATCTAAGGCAT 59.802 43.478 4.45 0.00 0.00 4.40
8869 12144 2.565391 TCAACACCGAGAATCTAAGGCA 59.435 45.455 4.45 0.00 0.00 4.75
8870 12145 3.247006 TCAACACCGAGAATCTAAGGC 57.753 47.619 4.45 0.00 0.00 4.35
8871 12146 4.045104 CGATCAACACCGAGAATCTAAGG 58.955 47.826 3.17 3.17 0.00 2.69
8872 12147 4.921547 TCGATCAACACCGAGAATCTAAG 58.078 43.478 0.00 0.00 0.00 2.18
8873 12148 4.976224 TCGATCAACACCGAGAATCTAA 57.024 40.909 0.00 0.00 0.00 2.10
8881 12156 1.239296 ACCGTCTCGATCAACACCGA 61.239 55.000 0.00 0.00 0.00 4.69
8882 12157 0.388134 AACCGTCTCGATCAACACCG 60.388 55.000 0.00 0.00 0.00 4.94
8883 12158 1.067776 AGAACCGTCTCGATCAACACC 60.068 52.381 0.00 0.00 0.00 4.16
8884 12159 2.251893 GAGAACCGTCTCGATCAACAC 58.748 52.381 0.00 0.00 41.02 3.32
8885 12160 2.631418 GAGAACCGTCTCGATCAACA 57.369 50.000 0.00 0.00 41.02 3.33
8901 12176 2.721167 CGGGTGCATTCTCCGGAGA 61.721 63.158 30.49 30.49 40.07 3.71
8902 12177 2.202932 CGGGTGCATTCTCCGGAG 60.203 66.667 26.32 26.32 40.07 4.63
8903 12178 2.682136 TCGGGTGCATTCTCCGGA 60.682 61.111 2.93 2.93 43.54 5.14
8904 12179 2.202932 CTCGGGTGCATTCTCCGG 60.203 66.667 16.59 0.00 43.54 5.14
8905 12180 2.892425 GCTCGGGTGCATTCTCCG 60.892 66.667 12.44 12.44 44.59 4.63
8906 12181 1.817099 CAGCTCGGGTGCATTCTCC 60.817 63.158 0.00 0.00 34.99 3.71
8907 12182 0.391661 TTCAGCTCGGGTGCATTCTC 60.392 55.000 0.00 0.00 34.99 2.87
8908 12183 0.674895 GTTCAGCTCGGGTGCATTCT 60.675 55.000 0.00 0.00 34.99 2.40
8909 12184 1.648467 GGTTCAGCTCGGGTGCATTC 61.648 60.000 0.00 0.00 34.99 2.67
8910 12185 1.675641 GGTTCAGCTCGGGTGCATT 60.676 57.895 0.00 0.00 34.99 3.56
8911 12186 2.045926 GGTTCAGCTCGGGTGCAT 60.046 61.111 0.00 0.00 34.99 3.96
8912 12187 4.680237 CGGTTCAGCTCGGGTGCA 62.680 66.667 0.00 0.00 34.99 4.57
8913 12188 4.681978 ACGGTTCAGCTCGGGTGC 62.682 66.667 0.00 0.00 0.00 5.01
8914 12189 2.149803 TACACGGTTCAGCTCGGGTG 62.150 60.000 10.42 4.82 43.30 4.61
8915 12190 1.904865 TACACGGTTCAGCTCGGGT 60.905 57.895 5.71 5.71 45.50 5.28
8916 12191 1.445582 GTACACGGTTCAGCTCGGG 60.446 63.158 0.00 0.00 35.69 5.14
8917 12192 1.445582 GGTACACGGTTCAGCTCGG 60.446 63.158 0.00 0.00 0.00 4.63
8918 12193 1.445582 GGGTACACGGTTCAGCTCG 60.446 63.158 0.00 0.00 0.00 5.03
8919 12194 1.079336 GGGGTACACGGTTCAGCTC 60.079 63.158 0.00 0.00 0.00 4.09
8920 12195 1.125711 AAGGGGTACACGGTTCAGCT 61.126 55.000 0.00 0.00 0.00 4.24
8921 12196 0.953960 CAAGGGGTACACGGTTCAGC 60.954 60.000 0.00 0.00 0.00 4.26
8922 12197 0.953960 GCAAGGGGTACACGGTTCAG 60.954 60.000 0.00 0.00 0.00 3.02
8923 12198 1.071814 GCAAGGGGTACACGGTTCA 59.928 57.895 0.00 0.00 0.00 3.18
8924 12199 1.673337 GGCAAGGGGTACACGGTTC 60.673 63.158 0.00 0.00 0.00 3.62
8925 12200 0.837260 TAGGCAAGGGGTACACGGTT 60.837 55.000 0.00 0.00 0.00 4.44
8926 12201 0.837260 TTAGGCAAGGGGTACACGGT 60.837 55.000 0.00 0.00 0.00 4.83
8927 12202 0.544697 ATTAGGCAAGGGGTACACGG 59.455 55.000 0.00 0.00 0.00 4.94
8928 12203 2.093128 AGAATTAGGCAAGGGGTACACG 60.093 50.000 0.00 0.00 0.00 4.49
8929 12204 3.646736 AGAATTAGGCAAGGGGTACAC 57.353 47.619 0.00 0.00 0.00 2.90
8930 12205 4.340617 CAAAGAATTAGGCAAGGGGTACA 58.659 43.478 0.00 0.00 0.00 2.90
8931 12206 3.699538 CCAAAGAATTAGGCAAGGGGTAC 59.300 47.826 0.00 0.00 0.00 3.34
8932 12207 3.309556 CCCAAAGAATTAGGCAAGGGGTA 60.310 47.826 0.00 0.00 0.00 3.69
8933 12208 2.559705 CCCAAAGAATTAGGCAAGGGGT 60.560 50.000 0.00 0.00 0.00 4.95
8934 12209 2.110578 CCCAAAGAATTAGGCAAGGGG 58.889 52.381 0.00 0.00 0.00 4.79
8935 12210 1.482182 GCCCAAAGAATTAGGCAAGGG 59.518 52.381 0.00 0.00 44.58 3.95
8936 12211 1.134946 CGCCCAAAGAATTAGGCAAGG 59.865 52.381 0.30 0.00 45.24 3.61
8937 12212 1.469767 GCGCCCAAAGAATTAGGCAAG 60.470 52.381 0.00 0.00 45.24 4.01
8938 12213 0.530288 GCGCCCAAAGAATTAGGCAA 59.470 50.000 0.00 0.00 45.24 4.52
8939 12214 1.319614 GGCGCCCAAAGAATTAGGCA 61.320 55.000 18.11 0.00 45.24 4.75
8940 12215 1.437573 GGCGCCCAAAGAATTAGGC 59.562 57.895 18.11 0.00 42.48 3.93
8941 12216 1.029947 ACGGCGCCCAAAGAATTAGG 61.030 55.000 23.46 4.19 0.00 2.69
8942 12217 0.808755 AACGGCGCCCAAAGAATTAG 59.191 50.000 23.46 4.79 0.00 1.73
8943 12218 0.523966 CAACGGCGCCCAAAGAATTA 59.476 50.000 23.46 0.00 0.00 1.40
8944 12219 1.288752 CAACGGCGCCCAAAGAATT 59.711 52.632 23.46 0.74 0.00 2.17
8945 12220 2.635443 CCAACGGCGCCCAAAGAAT 61.635 57.895 23.46 0.00 0.00 2.40
8946 12221 3.291383 CCAACGGCGCCCAAAGAA 61.291 61.111 23.46 0.00 0.00 2.52
8947 12222 3.561120 ATCCAACGGCGCCCAAAGA 62.561 57.895 23.46 13.75 0.00 2.52
8948 12223 3.061848 ATCCAACGGCGCCCAAAG 61.062 61.111 23.46 9.53 0.00 2.77
8949 12224 3.369400 CATCCAACGGCGCCCAAA 61.369 61.111 23.46 2.00 0.00 3.28
8957 12232 4.856801 CCGAGGGGCATCCAACGG 62.857 72.222 14.89 14.89 45.39 4.44
8958 12233 3.740128 CTCCGAGGGGCATCCAACG 62.740 68.421 0.00 3.75 38.24 4.10
8959 12234 2.190578 CTCCGAGGGGCATCCAAC 59.809 66.667 0.00 0.00 38.24 3.77
8960 12235 3.089874 CCTCCGAGGGGCATCCAA 61.090 66.667 6.53 0.00 38.24 3.53
8961 12236 4.088351 TCCTCCGAGGGGCATCCA 62.088 66.667 14.76 0.00 35.59 3.41
8962 12237 3.551407 GTCCTCCGAGGGGCATCC 61.551 72.222 14.76 0.00 35.59 3.51
8963 12238 2.764128 TGTCCTCCGAGGGGCATC 60.764 66.667 14.76 1.92 35.90 3.91
8964 12239 3.083997 GTGTCCTCCGAGGGGCAT 61.084 66.667 14.76 0.00 43.28 4.40
8965 12240 3.846405 AAGTGTCCTCCGAGGGGCA 62.846 63.158 14.76 10.94 38.81 5.36
8966 12241 3.003763 AAGTGTCCTCCGAGGGGC 61.004 66.667 14.76 8.54 35.59 5.80
8967 12242 1.608717 CTGAAGTGTCCTCCGAGGGG 61.609 65.000 14.76 0.00 35.59 4.79
8968 12243 0.900647 ACTGAAGTGTCCTCCGAGGG 60.901 60.000 14.76 0.00 35.59 4.30
8969 12244 1.835494 TACTGAAGTGTCCTCCGAGG 58.165 55.000 8.30 8.30 36.46 4.63
8970 12245 3.936372 TTTACTGAAGTGTCCTCCGAG 57.064 47.619 0.00 0.00 0.00 4.63
8971 12246 4.322499 GGAATTTACTGAAGTGTCCTCCGA 60.322 45.833 0.00 0.00 0.00 4.55
8972 12247 3.933332 GGAATTTACTGAAGTGTCCTCCG 59.067 47.826 0.00 0.00 0.00 4.63
8973 12248 5.167303 AGGAATTTACTGAAGTGTCCTCC 57.833 43.478 0.00 0.00 0.00 4.30
8974 12249 5.046231 AGGAGGAATTTACTGAAGTGTCCTC 60.046 44.000 17.49 17.49 40.15 3.71
8975 12250 4.846940 AGGAGGAATTTACTGAAGTGTCCT 59.153 41.667 6.55 6.55 0.00 3.85
8976 12251 5.167303 AGGAGGAATTTACTGAAGTGTCC 57.833 43.478 0.00 0.00 0.00 4.02
8977 12252 6.147985 GTCAAGGAGGAATTTACTGAAGTGTC 59.852 42.308 0.00 0.00 0.00 3.67
8978 12253 5.998363 GTCAAGGAGGAATTTACTGAAGTGT 59.002 40.000 0.00 0.00 0.00 3.55
8979 12254 5.120830 CGTCAAGGAGGAATTTACTGAAGTG 59.879 44.000 0.00 0.00 0.00 3.16
8980 12255 5.238583 CGTCAAGGAGGAATTTACTGAAGT 58.761 41.667 0.00 0.00 0.00 3.01
8981 12256 4.631813 CCGTCAAGGAGGAATTTACTGAAG 59.368 45.833 0.00 0.00 45.00 3.02
8982 12257 4.041198 ACCGTCAAGGAGGAATTTACTGAA 59.959 41.667 0.00 0.00 45.00 3.02
8983 12258 3.581332 ACCGTCAAGGAGGAATTTACTGA 59.419 43.478 0.00 0.00 45.00 3.41
8984 12259 3.684788 CACCGTCAAGGAGGAATTTACTG 59.315 47.826 0.00 0.00 45.00 2.74
8985 12260 3.868754 GCACCGTCAAGGAGGAATTTACT 60.869 47.826 0.00 0.00 45.00 2.24
8986 12261 2.418976 GCACCGTCAAGGAGGAATTTAC 59.581 50.000 0.00 0.00 45.00 2.01
8987 12262 2.617021 GGCACCGTCAAGGAGGAATTTA 60.617 50.000 0.00 0.00 45.00 1.40
8988 12263 1.534729 GCACCGTCAAGGAGGAATTT 58.465 50.000 0.00 0.00 45.00 1.82
8989 12264 0.322546 GGCACCGTCAAGGAGGAATT 60.323 55.000 0.00 0.00 45.00 2.17
8990 12265 1.299976 GGCACCGTCAAGGAGGAAT 59.700 57.895 0.00 0.00 45.00 3.01
8991 12266 2.747686 GGCACCGTCAAGGAGGAA 59.252 61.111 0.00 0.00 45.00 3.36
8992 12267 3.691342 CGGCACCGTCAAGGAGGA 61.691 66.667 0.00 0.00 45.00 3.71
8993 12268 3.649277 CTCGGCACCGTCAAGGAGG 62.649 68.421 9.23 0.00 45.00 4.30
8994 12269 2.125912 CTCGGCACCGTCAAGGAG 60.126 66.667 9.23 0.00 45.00 3.69
8995 12270 4.373116 GCTCGGCACCGTCAAGGA 62.373 66.667 9.23 0.00 45.00 3.36
8996 12271 3.958147 ATGCTCGGCACCGTCAAGG 62.958 63.158 9.23 0.00 43.04 3.61
8997 12272 2.434884 ATGCTCGGCACCGTCAAG 60.435 61.111 9.23 0.24 43.04 3.02
8998 12273 2.741985 CATGCTCGGCACCGTCAA 60.742 61.111 9.23 0.00 43.04 3.18
8999 12274 3.529341 AACATGCTCGGCACCGTCA 62.529 57.895 9.23 8.88 43.04 4.35
9000 12275 2.740714 GAACATGCTCGGCACCGTC 61.741 63.158 9.23 3.26 43.04 4.79
9001 12276 2.742372 GAACATGCTCGGCACCGT 60.742 61.111 9.23 0.00 43.04 4.83
9002 12277 3.853330 CGAACATGCTCGGCACCG 61.853 66.667 10.66 1.73 43.04 4.94
9026 12301 0.673956 GAAGAGGCAACGGAAGGACC 60.674 60.000 0.00 0.00 46.39 4.46
9027 12302 1.014564 CGAAGAGGCAACGGAAGGAC 61.015 60.000 0.00 0.00 46.39 3.85
9028 12303 1.183030 TCGAAGAGGCAACGGAAGGA 61.183 55.000 0.00 0.00 46.39 3.36
9029 12304 0.108138 ATCGAAGAGGCAACGGAAGG 60.108 55.000 0.00 0.00 43.63 3.46
9030 12305 1.394917 CAATCGAAGAGGCAACGGAAG 59.605 52.381 0.00 0.00 43.63 3.46
9031 12306 1.438651 CAATCGAAGAGGCAACGGAA 58.561 50.000 0.00 0.00 43.63 4.30
9032 12307 0.391130 CCAATCGAAGAGGCAACGGA 60.391 55.000 0.00 0.00 43.63 4.69
9033 12308 1.982073 GCCAATCGAAGAGGCAACGG 61.982 60.000 17.92 0.00 45.79 4.44
9034 12309 1.425428 GCCAATCGAAGAGGCAACG 59.575 57.895 17.92 0.00 45.79 4.10
9038 12313 2.476320 GGCAGCCAATCGAAGAGGC 61.476 63.158 6.55 15.82 46.71 4.70
9039 12314 0.465097 ATGGCAGCCAATCGAAGAGG 60.465 55.000 20.84 0.00 35.58 3.69
9040 12315 0.942962 GATGGCAGCCAATCGAAGAG 59.057 55.000 20.84 0.00 35.58 2.85
9041 12316 0.543277 AGATGGCAGCCAATCGAAGA 59.457 50.000 20.84 0.00 36.95 2.87
9042 12317 0.661552 CAGATGGCAGCCAATCGAAG 59.338 55.000 20.84 8.50 36.95 3.79
9043 12318 0.035152 ACAGATGGCAGCCAATCGAA 60.035 50.000 20.84 0.00 36.95 3.71
9044 12319 0.745486 CACAGATGGCAGCCAATCGA 60.745 55.000 20.84 0.00 36.95 3.59
9045 12320 1.721664 CCACAGATGGCAGCCAATCG 61.722 60.000 20.84 12.00 39.82 3.34
9046 12321 1.389609 CCCACAGATGGCAGCCAATC 61.390 60.000 20.84 16.12 45.76 2.67
9047 12322 1.380785 CCCACAGATGGCAGCCAAT 60.381 57.895 20.84 7.57 45.76 3.16
9048 12323 2.036098 CCCACAGATGGCAGCCAA 59.964 61.111 20.84 1.43 45.76 4.52
9049 12324 3.259314 ACCCACAGATGGCAGCCA 61.259 61.111 18.99 18.99 45.76 4.75
9050 12325 2.753043 CACCCACAGATGGCAGCC 60.753 66.667 3.66 3.66 45.76 4.85
9051 12326 2.034687 ACACCCACAGATGGCAGC 59.965 61.111 0.00 0.00 45.76 5.25
9052 12327 2.338015 GCACACCCACAGATGGCAG 61.338 63.158 0.00 0.00 45.76 4.85
9053 12328 2.282391 GCACACCCACAGATGGCA 60.282 61.111 0.00 0.00 45.76 4.92
9054 12329 2.034687 AGCACACCCACAGATGGC 59.965 61.111 0.00 0.00 45.76 4.40
9055 12330 2.338015 GCAGCACACCCACAGATGG 61.338 63.158 0.00 0.00 46.81 3.51
9056 12331 2.338015 GGCAGCACACCCACAGATG 61.338 63.158 0.00 0.00 0.00 2.90
9057 12332 2.034687 GGCAGCACACCCACAGAT 59.965 61.111 0.00 0.00 0.00 2.90
9058 12333 2.753009 GATGGCAGCACACCCACAGA 62.753 60.000 0.00 0.00 33.17 3.41
9059 12334 2.282674 ATGGCAGCACACCCACAG 60.283 61.111 0.00 0.00 33.17 3.66
9060 12335 2.282391 GATGGCAGCACACCCACA 60.282 61.111 0.00 0.00 33.17 4.17
9061 12336 1.660560 GATGATGGCAGCACACCCAC 61.661 60.000 7.97 0.00 33.17 4.61
9062 12337 1.378911 GATGATGGCAGCACACCCA 60.379 57.895 7.97 0.00 35.21 4.51
9063 12338 2.475466 CGATGATGGCAGCACACCC 61.475 63.158 7.97 0.00 0.00 4.61
9064 12339 2.475466 CCGATGATGGCAGCACACC 61.475 63.158 7.97 0.00 0.00 4.16
9065 12340 1.746615 ACCGATGATGGCAGCACAC 60.747 57.895 7.97 4.52 0.00 3.82
9066 12341 1.746239 CACCGATGATGGCAGCACA 60.746 57.895 7.97 0.28 0.00 4.57
9067 12342 2.475466 CCACCGATGATGGCAGCAC 61.475 63.158 7.97 1.05 0.00 4.40
9068 12343 2.124612 CCACCGATGATGGCAGCA 60.125 61.111 8.33 8.33 0.00 4.41
9069 12344 2.124570 ACCACCGATGATGGCAGC 60.125 61.111 0.00 0.00 41.31 5.25
9070 12345 1.820906 CCACCACCGATGATGGCAG 60.821 63.158 0.00 0.00 41.31 4.85
9071 12346 2.271821 CCACCACCGATGATGGCA 59.728 61.111 0.00 0.00 41.31 4.92
9073 12348 1.152902 ATGCCACCACCGATGATGG 60.153 57.895 0.00 0.00 43.43 3.51
9074 12349 1.168407 GGATGCCACCACCGATGATG 61.168 60.000 0.00 0.00 0.00 3.07
9075 12350 1.149174 GGATGCCACCACCGATGAT 59.851 57.895 0.00 0.00 0.00 2.45
9076 12351 1.561769 AAGGATGCCACCACCGATGA 61.562 55.000 0.00 0.00 0.00 2.92
9077 12352 1.077501 AAGGATGCCACCACCGATG 60.078 57.895 0.00 0.00 0.00 3.84
9078 12353 1.077501 CAAGGATGCCACCACCGAT 60.078 57.895 0.00 0.00 0.00 4.18
9079 12354 2.350895 CAAGGATGCCACCACCGA 59.649 61.111 0.00 0.00 0.00 4.69
9080 12355 2.751436 CCAAGGATGCCACCACCG 60.751 66.667 0.00 0.00 0.00 4.94
9081 12356 3.070576 GCCAAGGATGCCACCACC 61.071 66.667 0.00 0.00 0.00 4.61
9082 12357 3.443045 CGCCAAGGATGCCACCAC 61.443 66.667 0.00 0.00 0.00 4.16
9083 12358 4.738998 CCGCCAAGGATGCCACCA 62.739 66.667 0.00 0.00 45.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.