Multiple sequence alignment - TraesCS6B01G177200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G177200 chr6B 100.000 4739 0 0 1675 6413 194865697 194860959 0.000000e+00 8752.0
1 TraesCS6B01G177200 chr6B 100.000 1276 0 0 1 1276 194867371 194866096 0.000000e+00 2357.0
2 TraesCS6B01G177200 chr6B 88.817 769 78 4 5644 6411 194424173 194424934 0.000000e+00 937.0
3 TraesCS6B01G177200 chr6B 86.792 106 5 7 2705 2803 131889127 131889024 6.800000e-20 110.0
4 TraesCS6B01G177200 chr6D 96.154 2418 69 11 4010 6411 107389266 107386857 0.000000e+00 3928.0
5 TraesCS6B01G177200 chr6D 96.330 654 12 6 631 1276 107392255 107391606 0.000000e+00 1064.0
6 TraesCS6B01G177200 chr6D 89.624 771 42 14 3256 4014 107390049 107389305 0.000000e+00 946.0
7 TraesCS6B01G177200 chr6D 88.258 775 83 4 5640 6413 106703284 106704051 0.000000e+00 920.0
8 TraesCS6B01G177200 chr6D 89.929 566 19 11 1675 2205 107391529 107390967 0.000000e+00 695.0
9 TraesCS6B01G177200 chr6D 90.680 515 14 6 2221 2708 107390986 107390479 0.000000e+00 654.0
10 TraesCS6B01G177200 chr6D 95.165 393 17 1 2801 3193 107390462 107390072 2.540000e-173 619.0
11 TraesCS6B01G177200 chr6D 87.379 309 37 1 204 512 9795017 9795323 2.840000e-93 353.0
12 TraesCS6B01G177200 chr6D 97.727 44 1 0 541 584 107392296 107392253 6.890000e-10 76.8
13 TraesCS6B01G177200 chr6A 94.790 1996 72 15 4423 6413 131231827 131229859 0.000000e+00 3081.0
14 TraesCS6B01G177200 chr6A 88.846 771 78 4 5644 6413 129938258 129939021 0.000000e+00 941.0
15 TraesCS6B01G177200 chr6A 91.228 684 17 16 635 1276 131235378 131234696 0.000000e+00 891.0
16 TraesCS6B01G177200 chr6A 92.508 614 37 4 3410 4014 131232928 131232315 0.000000e+00 870.0
17 TraesCS6B01G177200 chr6A 92.599 581 30 4 2793 3363 131233583 131233006 0.000000e+00 822.0
18 TraesCS6B01G177200 chr6A 87.941 539 30 9 1675 2178 131234635 131234097 2.560000e-168 603.0
19 TraesCS6B01G177200 chr6A 90.783 434 25 7 4010 4435 131232276 131231850 3.360000e-157 566.0
20 TraesCS6B01G177200 chr6A 83.890 509 27 12 2221 2706 131234095 131233619 9.870000e-118 435.0
21 TraesCS6B01G177200 chr6A 88.557 201 19 3 3 202 131239608 131239411 2.310000e-59 241.0
22 TraesCS6B01G177200 chr6A 97.260 73 2 0 512 584 131239376 131239304 2.430000e-24 124.0
23 TraesCS6B01G177200 chr6A 90.909 44 2 1 586 629 537877012 537876971 2.500000e-04 58.4
24 TraesCS6B01G177200 chr7D 78.900 782 135 20 5641 6413 600450360 600449600 2.670000e-138 503.0
25 TraesCS6B01G177200 chr7D 81.469 572 96 10 4784 5350 599721970 599722536 1.630000e-125 460.0
26 TraesCS6B01G177200 chr7D 78.774 669 130 8 5641 6303 599808423 599809085 7.630000e-119 438.0
27 TraesCS6B01G177200 chr7D 86.869 99 7 5 2709 2802 594802497 594802400 8.790000e-19 106.0
28 TraesCS6B01G177200 chr7B 79.192 668 125 10 5643 6303 679671460 679672120 9.800000e-123 451.0
29 TraesCS6B01G177200 chr7A 78.988 652 125 8 5642 6287 692045159 692045804 9.870000e-118 435.0
30 TraesCS6B01G177200 chr7A 86.943 314 37 3 203 515 49918314 49918004 3.680000e-92 350.0
31 TraesCS6B01G177200 chr2A 87.742 310 36 1 204 513 676733680 676733987 1.700000e-95 361.0
32 TraesCS6B01G177200 chr2A 87.261 314 37 1 203 516 46686886 46687196 7.910000e-94 355.0
33 TraesCS6B01G177200 chr2A 87.541 305 32 5 203 506 126646635 126646336 1.320000e-91 348.0
34 TraesCS6B01G177200 chr2A 85.586 111 7 8 2705 2810 362443163 362443057 2.440000e-19 108.0
35 TraesCS6B01G177200 chr2A 94.595 37 1 1 579 614 412477369 412477333 8.980000e-04 56.5
36 TraesCS6B01G177200 chr3D 87.460 311 34 2 204 512 607358358 607358051 2.840000e-93 353.0
37 TraesCS6B01G177200 chr3D 89.247 93 4 5 2709 2795 318669374 318669282 1.890000e-20 111.0
38 TraesCS6B01G177200 chr2B 87.419 310 36 1 204 513 198447683 198447989 2.840000e-93 353.0
39 TraesCS6B01G177200 chr2B 90.110 91 2 6 2709 2793 153760991 153760902 1.890000e-20 111.0
40 TraesCS6B01G177200 chr1D 87.419 310 36 1 204 513 289511583 289511277 2.840000e-93 353.0
41 TraesCS6B01G177200 chr1B 87.419 310 36 1 204 513 252324602 252324908 2.840000e-93 353.0
42 TraesCS6B01G177200 chr5B 89.691 97 4 5 2702 2793 556628712 556628617 1.130000e-22 119.0
43 TraesCS6B01G177200 chr5B 94.444 36 1 1 580 614 511601796 511601831 3.000000e-03 54.7
44 TraesCS6B01G177200 chrUn 87.255 102 5 7 2693 2787 37289265 37289165 6.800000e-20 110.0
45 TraesCS6B01G177200 chr3B 87.879 99 5 7 2702 2794 652291746 652291843 6.800000e-20 110.0
46 TraesCS6B01G177200 chr3A 87.755 98 6 5 2705 2797 729669328 729669424 6.800000e-20 110.0
47 TraesCS6B01G177200 chr4B 100.000 29 0 0 586 614 668552707 668552735 3.000000e-03 54.7
48 TraesCS6B01G177200 chr4B 100.000 29 0 0 586 614 668933501 668933529 3.000000e-03 54.7
49 TraesCS6B01G177200 chr4B 100.000 29 0 0 586 614 669511706 669511734 3.000000e-03 54.7
50 TraesCS6B01G177200 chr4A 94.444 36 1 1 586 620 732965729 732965694 3.000000e-03 54.7
51 TraesCS6B01G177200 chr2D 90.476 42 2 2 586 625 638454474 638454433 3.000000e-03 54.7
52 TraesCS6B01G177200 chr1A 100.000 29 0 0 586 614 540258171 540258199 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G177200 chr6B 194860959 194867371 6412 True 5554.500000 8752 100.000000 1 6413 2 chr6B.!!$R2 6412
1 TraesCS6B01G177200 chr6B 194424173 194424934 761 False 937.000000 937 88.817000 5644 6411 1 chr6B.!!$F1 767
2 TraesCS6B01G177200 chr6D 107386857 107392296 5439 True 1140.400000 3928 93.658429 541 6411 7 chr6D.!!$R1 5870
3 TraesCS6B01G177200 chr6D 106703284 106704051 767 False 920.000000 920 88.258000 5640 6413 1 chr6D.!!$F2 773
4 TraesCS6B01G177200 chr6A 129938258 129939021 763 False 941.000000 941 88.846000 5644 6413 1 chr6A.!!$F1 769
5 TraesCS6B01G177200 chr6A 131229859 131239608 9749 True 848.111111 3081 91.061778 3 6413 9 chr6A.!!$R2 6410
6 TraesCS6B01G177200 chr7D 600449600 600450360 760 True 503.000000 503 78.900000 5641 6413 1 chr7D.!!$R2 772
7 TraesCS6B01G177200 chr7D 599721970 599722536 566 False 460.000000 460 81.469000 4784 5350 1 chr7D.!!$F1 566
8 TraesCS6B01G177200 chr7D 599808423 599809085 662 False 438.000000 438 78.774000 5641 6303 1 chr7D.!!$F2 662
9 TraesCS6B01G177200 chr7B 679671460 679672120 660 False 451.000000 451 79.192000 5643 6303 1 chr7B.!!$F1 660
10 TraesCS6B01G177200 chr7A 692045159 692045804 645 False 435.000000 435 78.988000 5642 6287 1 chr7A.!!$F1 645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
222 224 0.040204 AGGCCTCCTTTGGTTCATGG 59.960 55.0 0.00 0.0 0.00 3.66 F
444 446 0.106708 ACGCACCAAAGAGCTCTCAA 59.893 50.0 18.55 0.0 0.00 3.02 F
872 4770 0.119155 CCATCCCCCTATAGCCTCCA 59.881 60.0 0.00 0.0 0.00 3.86 F
2162 6118 0.318107 ACACGTTCGTTCAGTACCGG 60.318 55.0 0.00 0.0 0.00 5.28 F
3083 7076 0.328926 TGAGCTGCCCACATGATCAA 59.671 50.0 0.00 0.0 0.00 2.57 F
3810 7862 0.107165 GGTGGTTAGTGATGAGCCCC 60.107 60.0 0.00 0.0 0.00 5.80 F
3883 7939 0.804989 GGGCAAAAGATCGTGTCCTG 59.195 55.0 9.65 0.0 36.54 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1048 4966 0.322366 GCTCCCTTCTTTCTGCTGCT 60.322 55.000 0.00 0.00 0.00 4.24 R
2225 6181 0.984230 CAGTTGGGGACTTGGAGCTA 59.016 55.000 0.00 0.00 36.10 3.32 R
2471 6427 0.455972 CTGTAATTTGCGCCAACCGG 60.456 55.000 4.18 0.00 37.44 5.28 R
3759 7811 0.753262 GGTAGAGGTCCATGCGACAT 59.247 55.000 13.95 8.46 43.95 3.06 R
4694 8854 1.566563 GCGCTCTAATCATGTGCCG 59.433 57.895 0.00 0.00 0.00 5.69 R
5311 9471 1.079819 CACCCACGAGCACGAAGAT 60.080 57.895 11.40 0.00 42.66 2.40 R
5512 9676 3.435327 CACACGCTGCCACTAAATTAAGA 59.565 43.478 0.00 0.00 0.00 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.447314 GGTCGTTCGCTGGGGTTAG 60.447 63.158 0.00 0.00 0.00 2.34
52 53 2.429930 CTGGCCAACGGTCCTCAA 59.570 61.111 7.01 0.00 0.00 3.02
62 63 5.399013 CCAACGGTCCTCAAATAACATTTC 58.601 41.667 0.00 0.00 0.00 2.17
79 81 6.317789 ACATTTCGAGCATGAAGAAAAAGA 57.682 33.333 12.36 0.00 37.41 2.52
83 85 6.618287 TTCGAGCATGAAGAAAAAGAAAGA 57.382 33.333 0.00 0.00 0.00 2.52
90 92 8.087136 AGCATGAAGAAAAAGAAAGATTTCTCC 58.913 33.333 8.22 0.16 46.22 3.71
92 94 9.189723 CATGAAGAAAAAGAAAGATTTCTCCAC 57.810 33.333 8.22 2.21 46.22 4.02
100 102 9.599866 AAAAGAAAGATTTCTCCACGAATTTTT 57.400 25.926 8.22 0.44 46.22 1.94
148 150 8.657712 AGGACACCATAGTAAAAGAAAACTACT 58.342 33.333 0.00 0.00 31.30 2.57
181 183 8.648698 TTCATCCCTACAAAAATCTCATGAAA 57.351 30.769 0.00 0.00 0.00 2.69
205 207 5.982890 AACCATTGTTCCAAATGAGTAGG 57.017 39.130 0.00 0.00 39.46 3.18
206 208 3.763897 ACCATTGTTCCAAATGAGTAGGC 59.236 43.478 0.00 0.00 39.46 3.93
207 209 3.131046 CCATTGTTCCAAATGAGTAGGCC 59.869 47.826 0.00 0.00 39.46 5.19
209 211 3.350219 TGTTCCAAATGAGTAGGCCTC 57.650 47.619 9.68 0.21 40.89 4.70
210 212 2.026262 TGTTCCAAATGAGTAGGCCTCC 60.026 50.000 9.68 0.00 39.65 4.30
211 213 2.239907 GTTCCAAATGAGTAGGCCTCCT 59.760 50.000 9.68 1.09 39.65 3.69
212 214 2.562296 TCCAAATGAGTAGGCCTCCTT 58.438 47.619 9.68 0.00 39.65 3.36
214 216 3.019564 CCAAATGAGTAGGCCTCCTTTG 58.980 50.000 9.68 11.17 46.74 2.77
215 217 3.019564 CAAATGAGTAGGCCTCCTTTGG 58.980 50.000 9.68 0.00 45.02 3.28
216 218 1.972588 ATGAGTAGGCCTCCTTTGGT 58.027 50.000 9.68 0.00 39.65 3.67
217 219 1.742308 TGAGTAGGCCTCCTTTGGTT 58.258 50.000 9.68 0.00 39.65 3.67
218 220 1.628846 TGAGTAGGCCTCCTTTGGTTC 59.371 52.381 9.68 0.00 39.65 3.62
220 222 2.239907 GAGTAGGCCTCCTTTGGTTCAT 59.760 50.000 9.68 0.00 34.61 2.57
221 223 2.025887 AGTAGGCCTCCTTTGGTTCATG 60.026 50.000 9.68 0.00 34.61 3.07
222 224 0.040204 AGGCCTCCTTTGGTTCATGG 59.960 55.000 0.00 0.00 0.00 3.66
223 225 0.972471 GGCCTCCTTTGGTTCATGGG 60.972 60.000 0.00 0.00 0.00 4.00
224 226 0.972471 GCCTCCTTTGGTTCATGGGG 60.972 60.000 0.00 0.00 0.00 4.96
225 227 0.409484 CCTCCTTTGGTTCATGGGGT 59.591 55.000 0.00 0.00 0.00 4.95
226 228 1.638589 CCTCCTTTGGTTCATGGGGTA 59.361 52.381 0.00 0.00 0.00 3.69
228 230 1.638589 TCCTTTGGTTCATGGGGTAGG 59.361 52.381 0.00 0.00 0.00 3.18
229 231 1.638589 CCTTTGGTTCATGGGGTAGGA 59.361 52.381 0.00 0.00 0.00 2.94
230 232 2.042433 CCTTTGGTTCATGGGGTAGGAA 59.958 50.000 0.00 0.00 0.00 3.36
231 233 3.501385 CCTTTGGTTCATGGGGTAGGAAA 60.501 47.826 0.00 0.00 29.85 3.13
232 234 3.905493 TTGGTTCATGGGGTAGGAAAA 57.095 42.857 0.00 0.00 29.85 2.29
233 235 4.412060 TTGGTTCATGGGGTAGGAAAAT 57.588 40.909 0.00 0.00 29.85 1.82
234 236 3.976015 TGGTTCATGGGGTAGGAAAATC 58.024 45.455 0.00 0.00 29.85 2.17
235 237 3.335183 TGGTTCATGGGGTAGGAAAATCA 59.665 43.478 0.00 0.00 29.85 2.57
236 238 4.016666 TGGTTCATGGGGTAGGAAAATCAT 60.017 41.667 0.00 0.00 29.85 2.45
237 239 5.194740 TGGTTCATGGGGTAGGAAAATCATA 59.805 40.000 0.00 0.00 29.85 2.15
238 240 6.133356 GGTTCATGGGGTAGGAAAATCATAA 58.867 40.000 0.00 0.00 29.85 1.90
239 241 6.265422 GGTTCATGGGGTAGGAAAATCATAAG 59.735 42.308 0.00 0.00 29.85 1.73
240 242 6.840090 TCATGGGGTAGGAAAATCATAAGA 57.160 37.500 0.00 0.00 0.00 2.10
241 243 7.219601 TCATGGGGTAGGAAAATCATAAGAA 57.780 36.000 0.00 0.00 0.00 2.52
242 244 7.825709 TCATGGGGTAGGAAAATCATAAGAAT 58.174 34.615 0.00 0.00 0.00 2.40
243 245 8.954729 TCATGGGGTAGGAAAATCATAAGAATA 58.045 33.333 0.00 0.00 0.00 1.75
244 246 9.759473 CATGGGGTAGGAAAATCATAAGAATAT 57.241 33.333 0.00 0.00 0.00 1.28
245 247 9.759473 ATGGGGTAGGAAAATCATAAGAATATG 57.241 33.333 0.00 0.00 40.29 1.78
310 312 8.900983 ATGAGTAAGAATAGAAAAGGAGATGC 57.099 34.615 0.00 0.00 0.00 3.91
311 313 7.275920 TGAGTAAGAATAGAAAAGGAGATGCC 58.724 38.462 0.00 0.00 0.00 4.40
312 314 6.596621 AGTAAGAATAGAAAAGGAGATGCCC 58.403 40.000 0.00 0.00 37.37 5.36
313 315 5.723860 AAGAATAGAAAAGGAGATGCCCT 57.276 39.130 0.00 0.00 38.42 5.19
321 323 3.744940 AAGGAGATGCCCTTTGATTCA 57.255 42.857 0.00 0.00 43.68 2.57
322 324 3.967467 AGGAGATGCCCTTTGATTCAT 57.033 42.857 0.00 0.00 37.37 2.57
323 325 5.393068 AAGGAGATGCCCTTTGATTCATA 57.607 39.130 0.00 0.00 43.68 2.15
324 326 5.393068 AGGAGATGCCCTTTGATTCATAA 57.607 39.130 0.00 0.00 37.37 1.90
325 327 5.769835 AGGAGATGCCCTTTGATTCATAAA 58.230 37.500 0.00 0.00 37.37 1.40
326 328 6.197168 AGGAGATGCCCTTTGATTCATAAAA 58.803 36.000 0.00 0.00 37.37 1.52
327 329 6.842807 AGGAGATGCCCTTTGATTCATAAAAT 59.157 34.615 0.00 0.00 37.37 1.82
328 330 8.006564 AGGAGATGCCCTTTGATTCATAAAATA 58.993 33.333 0.00 0.00 37.37 1.40
329 331 8.302438 GGAGATGCCCTTTGATTCATAAAATAG 58.698 37.037 0.00 0.00 0.00 1.73
330 332 8.186709 AGATGCCCTTTGATTCATAAAATAGG 57.813 34.615 0.00 0.00 0.00 2.57
331 333 8.006564 AGATGCCCTTTGATTCATAAAATAGGA 58.993 33.333 0.00 0.00 0.00 2.94
332 334 8.731591 ATGCCCTTTGATTCATAAAATAGGAT 57.268 30.769 0.00 0.00 0.00 3.24
333 335 8.551682 TGCCCTTTGATTCATAAAATAGGATT 57.448 30.769 0.00 0.00 0.00 3.01
334 336 8.991275 TGCCCTTTGATTCATAAAATAGGATTT 58.009 29.630 0.00 0.00 0.00 2.17
335 337 9.836864 GCCCTTTGATTCATAAAATAGGATTTT 57.163 29.630 2.96 2.96 0.00 1.82
385 387 8.187480 TGTTTATTTTCATATGGAATGTGGACG 58.813 33.333 2.13 0.00 35.96 4.79
386 388 8.402472 GTTTATTTTCATATGGAATGTGGACGA 58.598 33.333 2.13 0.00 35.96 4.20
387 389 8.690203 TTATTTTCATATGGAATGTGGACGAT 57.310 30.769 2.13 0.00 35.96 3.73
388 390 9.785982 TTATTTTCATATGGAATGTGGACGATA 57.214 29.630 2.13 0.00 35.96 2.92
389 391 7.728847 TTTTCATATGGAATGTGGACGATAG 57.271 36.000 2.13 0.00 35.96 2.08
390 392 5.405935 TCATATGGAATGTGGACGATAGG 57.594 43.478 2.13 0.00 35.96 2.57
391 393 5.083821 TCATATGGAATGTGGACGATAGGA 58.916 41.667 2.13 0.00 35.96 2.94
392 394 5.542251 TCATATGGAATGTGGACGATAGGAA 59.458 40.000 2.13 0.00 35.96 3.36
393 395 3.819564 TGGAATGTGGACGATAGGAAG 57.180 47.619 0.00 0.00 43.77 3.46
394 396 3.371034 TGGAATGTGGACGATAGGAAGA 58.629 45.455 0.00 0.00 43.77 2.87
395 397 3.772572 TGGAATGTGGACGATAGGAAGAA 59.227 43.478 0.00 0.00 43.77 2.52
396 398 4.408921 TGGAATGTGGACGATAGGAAGAAT 59.591 41.667 0.00 0.00 43.77 2.40
397 399 5.104527 TGGAATGTGGACGATAGGAAGAATT 60.105 40.000 0.00 0.00 43.77 2.17
398 400 5.823045 GGAATGTGGACGATAGGAAGAATTT 59.177 40.000 0.00 0.00 43.77 1.82
399 401 6.017852 GGAATGTGGACGATAGGAAGAATTTC 60.018 42.308 0.00 0.00 43.77 2.17
400 402 5.677319 TGTGGACGATAGGAAGAATTTCT 57.323 39.130 0.00 0.00 43.77 2.52
401 403 6.049955 TGTGGACGATAGGAAGAATTTCTT 57.950 37.500 11.40 11.40 38.57 2.52
423 425 9.658799 TTCTTCATATGAATAGGATTCGATTCC 57.341 33.333 18.26 16.90 35.16 3.01
430 432 2.510768 AGGATTCGATTCCTACGCAC 57.489 50.000 23.99 0.00 44.50 5.34
431 433 1.068741 AGGATTCGATTCCTACGCACC 59.931 52.381 23.99 0.00 44.50 5.01
432 434 1.202486 GGATTCGATTCCTACGCACCA 60.202 52.381 17.26 0.00 32.68 4.17
433 435 2.546778 GATTCGATTCCTACGCACCAA 58.453 47.619 0.00 0.00 0.00 3.67
434 436 2.459060 TTCGATTCCTACGCACCAAA 57.541 45.000 0.00 0.00 0.00 3.28
435 437 2.004583 TCGATTCCTACGCACCAAAG 57.995 50.000 0.00 0.00 0.00 2.77
436 438 1.546923 TCGATTCCTACGCACCAAAGA 59.453 47.619 0.00 0.00 0.00 2.52
437 439 1.927174 CGATTCCTACGCACCAAAGAG 59.073 52.381 0.00 0.00 0.00 2.85
438 440 1.666189 GATTCCTACGCACCAAAGAGC 59.334 52.381 0.00 0.00 0.00 4.09
439 441 0.685097 TTCCTACGCACCAAAGAGCT 59.315 50.000 0.00 0.00 0.00 4.09
440 442 0.246635 TCCTACGCACCAAAGAGCTC 59.753 55.000 5.27 5.27 0.00 4.09
441 443 0.247736 CCTACGCACCAAAGAGCTCT 59.752 55.000 11.45 11.45 0.00 4.09
442 444 1.634702 CTACGCACCAAAGAGCTCTC 58.365 55.000 18.55 1.85 0.00 3.20
443 445 0.966179 TACGCACCAAAGAGCTCTCA 59.034 50.000 18.55 0.00 0.00 3.27
444 446 0.106708 ACGCACCAAAGAGCTCTCAA 59.893 50.000 18.55 0.00 0.00 3.02
445 447 0.795085 CGCACCAAAGAGCTCTCAAG 59.205 55.000 18.55 10.85 0.00 3.02
446 448 1.163554 GCACCAAAGAGCTCTCAAGG 58.836 55.000 18.55 20.19 0.00 3.61
447 449 1.271054 GCACCAAAGAGCTCTCAAGGA 60.271 52.381 26.65 0.00 0.00 3.36
448 450 2.811873 GCACCAAAGAGCTCTCAAGGAA 60.812 50.000 26.65 0.00 0.00 3.36
449 451 3.683802 CACCAAAGAGCTCTCAAGGAAT 58.316 45.455 26.65 6.10 0.00 3.01
450 452 4.077822 CACCAAAGAGCTCTCAAGGAATT 58.922 43.478 26.65 11.36 0.00 2.17
451 453 4.522022 CACCAAAGAGCTCTCAAGGAATTT 59.478 41.667 26.65 10.72 0.00 1.82
452 454 5.010415 CACCAAAGAGCTCTCAAGGAATTTT 59.990 40.000 26.65 10.09 0.00 1.82
453 455 5.600069 ACCAAAGAGCTCTCAAGGAATTTTT 59.400 36.000 26.65 9.46 0.00 1.94
454 456 6.155136 CCAAAGAGCTCTCAAGGAATTTTTC 58.845 40.000 18.55 0.00 0.00 2.29
506 508 8.802267 TCATACAAGATTTCTTTAAACCAAGGG 58.198 33.333 0.00 0.00 33.11 3.95
507 509 8.802267 CATACAAGATTTCTTTAAACCAAGGGA 58.198 33.333 0.00 0.00 33.11 4.20
508 510 7.290110 ACAAGATTTCTTTAAACCAAGGGAG 57.710 36.000 0.00 0.00 33.11 4.30
509 511 6.267699 ACAAGATTTCTTTAAACCAAGGGAGG 59.732 38.462 0.00 0.00 33.11 4.30
510 512 4.772624 AGATTTCTTTAAACCAAGGGAGGC 59.227 41.667 0.00 0.00 0.00 4.70
530 532 4.698780 AGGCCTTATCTTTTCGTTACCAAC 59.301 41.667 0.00 0.00 0.00 3.77
536 538 7.385752 CCTTATCTTTTCGTTACCAACTACACA 59.614 37.037 0.00 0.00 0.00 3.72
584 586 1.069090 ACGCACGGGTGGCATATAG 59.931 57.895 1.98 0.00 0.00 1.31
585 587 2.317609 CGCACGGGTGGCATATAGC 61.318 63.158 0.43 0.00 44.65 2.97
601 603 6.522054 GCATATAGCCCTCTGTAAACTAACA 58.478 40.000 0.00 0.00 37.23 2.41
602 604 7.162082 GCATATAGCCCTCTGTAAACTAACAT 58.838 38.462 0.00 0.00 37.23 2.71
603 605 8.311836 GCATATAGCCCTCTGTAAACTAACATA 58.688 37.037 0.00 0.00 37.23 2.29
607 609 6.879400 AGCCCTCTGTAAACTAACATAAGAG 58.121 40.000 0.00 0.00 0.00 2.85
608 610 5.524281 GCCCTCTGTAAACTAACATAAGAGC 59.476 44.000 0.00 0.00 0.00 4.09
609 611 5.749109 CCCTCTGTAAACTAACATAAGAGCG 59.251 44.000 0.00 0.00 0.00 5.03
610 612 6.331061 CCTCTGTAAACTAACATAAGAGCGT 58.669 40.000 0.00 0.00 0.00 5.07
611 613 6.812160 CCTCTGTAAACTAACATAAGAGCGTT 59.188 38.462 0.00 0.00 0.00 4.84
612 614 7.331193 CCTCTGTAAACTAACATAAGAGCGTTT 59.669 37.037 0.00 0.00 0.00 3.60
613 615 9.350357 CTCTGTAAACTAACATAAGAGCGTTTA 57.650 33.333 0.00 0.00 0.00 2.01
614 616 9.865321 TCTGTAAACTAACATAAGAGCGTTTAT 57.135 29.630 0.00 0.00 31.89 1.40
872 4770 0.119155 CCATCCCCCTATAGCCTCCA 59.881 60.000 0.00 0.00 0.00 3.86
873 4771 1.280457 CATCCCCCTATAGCCTCCAC 58.720 60.000 0.00 0.00 0.00 4.02
1753 5674 1.761174 GGGTTCCTGCTGTTCCTGA 59.239 57.895 0.00 0.00 0.00 3.86
1859 5783 3.308866 ACACGACTTGACTTTCCTTTTCG 59.691 43.478 0.00 0.00 0.00 3.46
1860 5784 3.554324 CACGACTTGACTTTCCTTTTCGA 59.446 43.478 0.00 0.00 0.00 3.71
1861 5785 4.033587 CACGACTTGACTTTCCTTTTCGAA 59.966 41.667 0.00 0.00 0.00 3.71
1862 5786 4.814771 ACGACTTGACTTTCCTTTTCGAAT 59.185 37.500 0.00 0.00 0.00 3.34
1863 5787 5.140177 CGACTTGACTTTCCTTTTCGAATG 58.860 41.667 0.00 0.00 0.00 2.67
1876 5816 8.885494 TCCTTTTCGAATGAAATGATTGTTTT 57.115 26.923 0.00 0.00 43.32 2.43
2007 5947 2.851263 TGCGAATTAACTCACCACCT 57.149 45.000 0.00 0.00 0.00 4.00
2156 6112 1.718361 CGCAATCACACGTTCGTTCAG 60.718 52.381 0.00 0.00 0.00 3.02
2162 6118 0.318107 ACACGTTCGTTCAGTACCGG 60.318 55.000 0.00 0.00 0.00 5.28
2180 6136 0.604578 GGCTCTTTCTGCATTGCCAA 59.395 50.000 6.12 0.00 40.04 4.52
2184 6140 3.129988 GCTCTTTCTGCATTGCCAACTAT 59.870 43.478 6.12 0.00 0.00 2.12
2185 6141 4.732938 GCTCTTTCTGCATTGCCAACTATC 60.733 45.833 6.12 0.00 0.00 2.08
2193 6149 5.230182 TGCATTGCCAACTATCGATACTAG 58.770 41.667 6.12 0.00 0.00 2.57
2194 6150 4.092091 GCATTGCCAACTATCGATACTAGC 59.908 45.833 0.00 3.32 0.00 3.42
2195 6151 5.473931 CATTGCCAACTATCGATACTAGCT 58.526 41.667 0.00 0.00 0.00 3.32
2196 6152 4.768130 TGCCAACTATCGATACTAGCTC 57.232 45.455 0.00 0.00 0.00 4.09
2197 6153 3.506455 TGCCAACTATCGATACTAGCTCC 59.494 47.826 0.00 0.00 0.00 4.70
2198 6154 3.506455 GCCAACTATCGATACTAGCTCCA 59.494 47.826 0.00 0.00 0.00 3.86
2199 6155 4.022242 GCCAACTATCGATACTAGCTCCAA 60.022 45.833 0.00 0.00 0.00 3.53
2200 6156 5.704888 CCAACTATCGATACTAGCTCCAAG 58.295 45.833 0.00 0.00 0.00 3.61
2201 6157 5.241949 CCAACTATCGATACTAGCTCCAAGT 59.758 44.000 0.00 0.00 0.00 3.16
2202 6158 6.375377 CAACTATCGATACTAGCTCCAAGTC 58.625 44.000 0.00 0.00 0.00 3.01
2203 6159 5.871834 ACTATCGATACTAGCTCCAAGTCT 58.128 41.667 0.00 0.00 0.00 3.24
2204 6160 5.935789 ACTATCGATACTAGCTCCAAGTCTC 59.064 44.000 0.00 0.00 0.00 3.36
2205 6161 4.425180 TCGATACTAGCTCCAAGTCTCT 57.575 45.455 0.00 0.00 0.00 3.10
2206 6162 4.783055 TCGATACTAGCTCCAAGTCTCTT 58.217 43.478 0.00 0.00 0.00 2.85
2207 6163 5.194432 TCGATACTAGCTCCAAGTCTCTTT 58.806 41.667 0.00 0.00 0.00 2.52
2208 6164 5.652891 TCGATACTAGCTCCAAGTCTCTTTT 59.347 40.000 0.00 0.00 0.00 2.27
2209 6165 6.153000 TCGATACTAGCTCCAAGTCTCTTTTT 59.847 38.462 0.00 0.00 0.00 1.94
2237 6193 1.614413 CGGGATACTAGCTCCAAGTCC 59.386 57.143 12.65 0.00 34.24 3.85
2323 6279 1.593006 GTGACAAGAACACACTGTCCG 59.407 52.381 0.00 0.00 38.05 4.79
2327 6283 2.093658 ACAAGAACACACTGTCCGAAGT 60.094 45.455 0.00 0.00 0.00 3.01
2338 6294 0.790814 GTCCGAAGTAGCAAGTGCAC 59.209 55.000 9.40 9.40 45.16 4.57
2364 6320 2.113131 GAGCCACACCAAACGAACGG 62.113 60.000 0.00 0.00 0.00 4.44
2383 6339 3.712881 GTTCGCGCACAGGGACAC 61.713 66.667 8.75 0.00 41.78 3.67
2471 6427 0.675522 AATGCAATGCTGGCTTTGGC 60.676 50.000 18.25 12.67 33.43 4.52
2583 6540 3.766691 CCAGCAAGGTGCCATGGC 61.767 66.667 30.54 30.54 46.52 4.40
2584 6541 2.992689 CAGCAAGGTGCCATGGCA 60.993 61.111 35.59 35.59 46.52 4.92
2631 6588 9.555727 ACTGCTACTACTTTGTTTATGAAAGAA 57.444 29.630 0.00 0.00 34.94 2.52
2709 6692 6.200286 TCAATCGGTAAGAAACGCATCTAATC 59.800 38.462 0.00 0.00 0.00 1.75
2710 6693 4.365723 TCGGTAAGAAACGCATCTAATCC 58.634 43.478 0.00 0.00 0.00 3.01
2711 6694 3.493503 CGGTAAGAAACGCATCTAATCCC 59.506 47.826 0.00 0.00 0.00 3.85
2713 6696 4.750598 GGTAAGAAACGCATCTAATCCCTC 59.249 45.833 0.00 0.00 0.00 4.30
2716 6699 1.120530 AACGCATCTAATCCCTCCGT 58.879 50.000 0.00 0.00 0.00 4.69
2717 6700 1.120530 ACGCATCTAATCCCTCCGTT 58.879 50.000 0.00 0.00 0.00 4.44
2719 6702 1.605712 CGCATCTAATCCCTCCGTTCC 60.606 57.143 0.00 0.00 0.00 3.62
2720 6703 1.416401 GCATCTAATCCCTCCGTTCCA 59.584 52.381 0.00 0.00 0.00 3.53
2721 6704 2.158813 GCATCTAATCCCTCCGTTCCAA 60.159 50.000 0.00 0.00 0.00 3.53
2723 6706 4.523083 CATCTAATCCCTCCGTTCCAAAA 58.477 43.478 0.00 0.00 0.00 2.44
2724 6707 4.855298 TCTAATCCCTCCGTTCCAAAAT 57.145 40.909 0.00 0.00 0.00 1.82
2725 6708 5.961398 TCTAATCCCTCCGTTCCAAAATA 57.039 39.130 0.00 0.00 0.00 1.40
2726 6709 5.925509 TCTAATCCCTCCGTTCCAAAATAG 58.074 41.667 0.00 0.00 0.00 1.73
2727 6710 4.855298 AATCCCTCCGTTCCAAAATAGA 57.145 40.909 0.00 0.00 0.00 1.98
2728 6711 5.388599 AATCCCTCCGTTCCAAAATAGAT 57.611 39.130 0.00 0.00 0.00 1.98
2729 6712 4.150897 TCCCTCCGTTCCAAAATAGATG 57.849 45.455 0.00 0.00 0.00 2.90
2730 6713 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2731 6714 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2732 6715 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
2733 6716 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
2734 6717 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
2736 6719 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
2737 6720 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
2739 6722 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
2740 6723 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
2741 6724 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
2742 6725 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
2743 6726 9.567776 TCCAAAATAGATGACTCAACTTTGTAA 57.432 29.630 0.00 0.00 0.00 2.41
2779 6762 6.727824 AAGTTGAGTCATCTATTTTGGACG 57.272 37.500 4.14 0.00 35.49 4.79
2780 6763 5.178797 AGTTGAGTCATCTATTTTGGACGG 58.821 41.667 1.70 0.00 35.49 4.79
2781 6764 4.137116 TGAGTCATCTATTTTGGACGGG 57.863 45.455 0.00 0.00 35.49 5.28
2782 6765 3.118408 TGAGTCATCTATTTTGGACGGGG 60.118 47.826 0.00 0.00 35.49 5.73
2783 6766 3.112263 AGTCATCTATTTTGGACGGGGA 58.888 45.455 0.00 0.00 35.49 4.81
2784 6767 3.134804 AGTCATCTATTTTGGACGGGGAG 59.865 47.826 0.00 0.00 35.49 4.30
2785 6768 3.112263 TCATCTATTTTGGACGGGGAGT 58.888 45.455 0.00 0.00 0.00 3.85
2786 6769 4.100498 GTCATCTATTTTGGACGGGGAGTA 59.900 45.833 0.00 0.00 0.00 2.59
2787 6770 4.717778 TCATCTATTTTGGACGGGGAGTAA 59.282 41.667 0.00 0.00 0.00 2.24
2788 6771 4.748277 TCTATTTTGGACGGGGAGTAAG 57.252 45.455 0.00 0.00 0.00 2.34
2789 6772 4.355549 TCTATTTTGGACGGGGAGTAAGA 58.644 43.478 0.00 0.00 0.00 2.10
2790 6773 3.629142 ATTTTGGACGGGGAGTAAGAG 57.371 47.619 0.00 0.00 0.00 2.85
2791 6774 2.314071 TTTGGACGGGGAGTAAGAGA 57.686 50.000 0.00 0.00 0.00 3.10
2798 6781 4.445448 GGACGGGGAGTAAGAGATAGTACA 60.445 50.000 0.00 0.00 0.00 2.90
2799 6782 5.121380 ACGGGGAGTAAGAGATAGTACAA 57.879 43.478 0.00 0.00 0.00 2.41
2821 6804 8.608844 ACAATATCTTGTCTCCGGATAATTTC 57.391 34.615 3.57 0.00 41.86 2.17
2886 6870 1.951209 TGGGACAGATGGTGCTAGAA 58.049 50.000 0.00 0.00 38.05 2.10
2986 6979 7.114811 CCAATGATTTAAATATAACTGCACCGC 59.885 37.037 0.00 0.00 0.00 5.68
2987 6980 5.743467 TGATTTAAATATAACTGCACCGCG 58.257 37.500 0.00 0.00 0.00 6.46
2988 6981 4.539509 TTTAAATATAACTGCACCGCGG 57.460 40.909 26.86 26.86 41.29 6.46
3050 7043 1.736126 CGCAGAAAGAGACATGCATGT 59.264 47.619 31.82 31.82 45.16 3.21
3083 7076 0.328926 TGAGCTGCCCACATGATCAA 59.671 50.000 0.00 0.00 0.00 2.57
3084 7077 1.272037 TGAGCTGCCCACATGATCAAA 60.272 47.619 0.00 0.00 0.00 2.69
3144 7137 4.676924 GCACTACAATTGTTCAAGCAACTC 59.323 41.667 17.78 0.00 35.79 3.01
3193 7186 7.833285 AATCAGTTCCCTCTAGATAACTCTC 57.167 40.000 10.68 0.00 32.66 3.20
3201 7194 7.235079 TCCCTCTAGATAACTCTCTAACCATG 58.765 42.308 0.00 0.00 32.66 3.66
3244 7237 3.840666 TCAGAGAATTGTACTTGCTCCCT 59.159 43.478 0.00 0.00 0.00 4.20
3353 7351 7.441017 AGACTTGAGATGCCATAGTAAATCTC 58.559 38.462 4.87 4.87 43.47 2.75
3384 7428 4.695217 AAAAACAAGAGCACGTCTTTGA 57.305 36.364 0.00 0.00 43.54 2.69
3385 7429 4.695217 AAAACAAGAGCACGTCTTTGAA 57.305 36.364 0.00 0.00 43.54 2.69
3386 7430 3.951979 AACAAGAGCACGTCTTTGAAG 57.048 42.857 0.00 0.00 43.54 3.02
3387 7431 2.906354 ACAAGAGCACGTCTTTGAAGT 58.094 42.857 0.00 0.00 43.54 3.01
3415 7459 8.607459 GTCTGACTGTATCATAGGAAAAACATG 58.393 37.037 0.00 0.00 36.48 3.21
3463 7507 2.987821 TGCATCACATGAAAAATGCACG 59.012 40.909 18.18 0.00 46.91 5.34
3611 7656 9.781834 TTCATTAATAGAAATAAACAAGCCGTG 57.218 29.630 0.00 0.00 0.00 4.94
3670 7715 7.008021 ACTTTCAAATAAAATGGCCTCACAT 57.992 32.000 3.32 0.00 0.00 3.21
3747 7799 4.350368 TCCTCTGCTGTAACAACAATGA 57.650 40.909 0.00 0.00 0.00 2.57
3810 7862 0.107165 GGTGGTTAGTGATGAGCCCC 60.107 60.000 0.00 0.00 0.00 5.80
3883 7939 0.804989 GGGCAAAAGATCGTGTCCTG 59.195 55.000 9.65 0.00 36.54 3.86
4044 8145 6.966632 TGAAATAGCACTGACGAATAATTTGC 59.033 34.615 0.00 0.00 0.00 3.68
4049 8152 6.158598 AGCACTGACGAATAATTTGCAATTT 58.841 32.000 11.06 11.06 0.00 1.82
4079 8182 8.992349 TGGATGATACAAATAAGGAGAGAAGAA 58.008 33.333 0.00 0.00 0.00 2.52
4131 8241 8.204903 TGTAGGAGGTAGAGGTACTAGATTAG 57.795 42.308 0.00 0.00 41.55 1.73
4159 8269 3.843027 AGATTGGCTCCATCTTCCGATAT 59.157 43.478 0.00 0.00 0.00 1.63
4209 8319 1.550524 TGGTGAGTCCTTTCCTGATCG 59.449 52.381 0.00 0.00 37.07 3.69
4410 8520 4.023450 CACTTTGCATGCAAGAGAAGAAGA 60.023 41.667 31.42 17.78 37.24 2.87
4411 8521 4.023365 ACTTTGCATGCAAGAGAAGAAGAC 60.023 41.667 31.42 1.15 37.24 3.01
4665 8825 9.255304 GTTTTACATGCCAAACAGAGATTTTTA 57.745 29.630 13.11 0.00 33.75 1.52
4694 8854 5.627172 TGTTATGTTTGCAGTTATCGCTTC 58.373 37.500 0.00 0.00 0.00 3.86
4737 8897 2.653766 GTGGCGTTGGTGTTTGCG 60.654 61.111 0.00 0.00 0.00 4.85
4857 9017 4.827087 CTGGCCATCAGCGCGACT 62.827 66.667 12.10 3.13 45.17 4.18
5311 9471 0.325933 CAGCCACCAGATCTTCCACA 59.674 55.000 0.00 0.00 0.00 4.17
5325 9485 0.388520 TCCACATCTTCGTGCTCGTG 60.389 55.000 8.17 1.62 35.47 4.35
5355 9515 4.456253 CACTACGTCGCCGTCGCT 62.456 66.667 0.00 0.00 46.28 4.93
5547 9711 3.291585 CAGCGTGTGAACTTGTGATTTC 58.708 45.455 0.00 0.00 0.00 2.17
5595 9766 1.130561 AGATTGCGCCGCTTTTTAGTC 59.869 47.619 11.67 0.00 0.00 2.59
5961 10132 1.890510 GAACACGAACACCCGCCTT 60.891 57.895 0.00 0.00 0.00 4.35
6048 10219 1.331214 AGTTTGTGTTCATGCCCCAG 58.669 50.000 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.006102 CAGCGAACGACCTCCTTGT 60.006 57.895 0.00 0.00 0.00 3.16
8 9 3.382832 CCCAGCGAACGACCTCCT 61.383 66.667 0.00 0.00 0.00 3.69
15 16 2.818274 GGCTAACCCCAGCGAACG 60.818 66.667 0.00 0.00 42.76 3.95
33 34 4.410400 GAGGACCGTTGGCCAGGG 62.410 72.222 20.23 20.23 36.38 4.45
34 35 2.690653 TTTGAGGACCGTTGGCCAGG 62.691 60.000 5.11 7.66 0.00 4.45
35 36 0.609131 ATTTGAGGACCGTTGGCCAG 60.609 55.000 5.11 0.00 0.00 4.85
36 37 0.693622 TATTTGAGGACCGTTGGCCA 59.306 50.000 0.00 0.00 0.00 5.36
47 48 6.122850 TCATGCTCGAAATGTTATTTGAGG 57.877 37.500 7.44 0.00 40.00 3.86
48 49 7.466805 TCTTCATGCTCGAAATGTTATTTGAG 58.533 34.615 7.44 0.83 41.75 3.02
52 53 9.132521 CTTTTTCTTCATGCTCGAAATGTTATT 57.867 29.630 7.44 0.00 0.00 1.40
62 63 7.806960 AGAAATCTTTCTTTTTCTTCATGCTCG 59.193 33.333 0.00 0.00 44.70 5.03
83 85 9.942850 ATTGGATTTAAAAATTCGTGGAGAAAT 57.057 25.926 0.00 0.00 42.91 2.17
90 92 9.632807 TTGTAGGATTGGATTTAAAAATTCGTG 57.367 29.630 0.00 0.00 0.00 4.35
100 102 7.559897 GTCCTTTGGATTGTAGGATTGGATTTA 59.440 37.037 0.00 0.00 40.05 1.40
188 190 3.561313 GGAGGCCTACTCATTTGGAACAA 60.561 47.826 8.12 0.00 46.96 2.83
202 204 1.284785 CCATGAACCAAAGGAGGCCTA 59.715 52.381 4.42 0.00 31.13 3.93
203 205 0.040204 CCATGAACCAAAGGAGGCCT 59.960 55.000 3.86 3.86 33.87 5.19
204 206 0.972471 CCCATGAACCAAAGGAGGCC 60.972 60.000 0.00 0.00 0.00 5.19
205 207 0.972471 CCCCATGAACCAAAGGAGGC 60.972 60.000 0.00 0.00 0.00 4.70
206 208 0.409484 ACCCCATGAACCAAAGGAGG 59.591 55.000 0.00 0.00 0.00 4.30
207 209 2.357154 CCTACCCCATGAACCAAAGGAG 60.357 54.545 0.00 0.00 0.00 3.69
209 211 1.638589 TCCTACCCCATGAACCAAAGG 59.361 52.381 0.00 0.00 0.00 3.11
210 212 3.449746 TTCCTACCCCATGAACCAAAG 57.550 47.619 0.00 0.00 0.00 2.77
211 213 3.905493 TTTCCTACCCCATGAACCAAA 57.095 42.857 0.00 0.00 0.00 3.28
212 214 3.905493 TTTTCCTACCCCATGAACCAA 57.095 42.857 0.00 0.00 0.00 3.67
214 216 3.976015 TGATTTTCCTACCCCATGAACC 58.024 45.455 0.00 0.00 0.00 3.62
215 217 7.060421 TCTTATGATTTTCCTACCCCATGAAC 58.940 38.462 0.00 0.00 0.00 3.18
216 218 7.219601 TCTTATGATTTTCCTACCCCATGAA 57.780 36.000 0.00 0.00 0.00 2.57
217 219 6.840090 TCTTATGATTTTCCTACCCCATGA 57.160 37.500 0.00 0.00 0.00 3.07
218 220 9.759473 ATATTCTTATGATTTTCCTACCCCATG 57.241 33.333 0.00 0.00 0.00 3.66
220 222 8.954729 TCATATTCTTATGATTTTCCTACCCCA 58.045 33.333 0.00 0.00 39.40 4.96
221 223 9.807921 TTCATATTCTTATGATTTTCCTACCCC 57.192 33.333 0.00 0.00 42.86 4.95
253 255 9.686683 TCGAGATACATATCATCTCATTTCCTA 57.313 33.333 17.88 0.20 45.82 2.94
254 256 8.586879 TCGAGATACATATCATCTCATTTCCT 57.413 34.615 17.88 0.00 45.82 3.36
255 257 9.814899 ATTCGAGATACATATCATCTCATTTCC 57.185 33.333 17.88 0.00 45.82 3.13
284 286 9.988815 GCATCTCCTTTTCTATTCTTACTCATA 57.011 33.333 0.00 0.00 0.00 2.15
285 287 7.936301 GGCATCTCCTTTTCTATTCTTACTCAT 59.064 37.037 0.00 0.00 0.00 2.90
286 288 7.275920 GGCATCTCCTTTTCTATTCTTACTCA 58.724 38.462 0.00 0.00 0.00 3.41
287 289 6.708502 GGGCATCTCCTTTTCTATTCTTACTC 59.291 42.308 0.00 0.00 34.39 2.59
288 290 6.388394 AGGGCATCTCCTTTTCTATTCTTACT 59.612 38.462 0.00 0.00 32.13 2.24
289 291 6.596621 AGGGCATCTCCTTTTCTATTCTTAC 58.403 40.000 0.00 0.00 32.13 2.34
290 292 6.831664 AGGGCATCTCCTTTTCTATTCTTA 57.168 37.500 0.00 0.00 32.13 2.10
291 293 5.723860 AGGGCATCTCCTTTTCTATTCTT 57.276 39.130 0.00 0.00 32.13 2.52
292 294 5.723860 AAGGGCATCTCCTTTTCTATTCT 57.276 39.130 0.00 0.00 44.14 2.40
302 304 3.967467 ATGAATCAAAGGGCATCTCCT 57.033 42.857 0.00 0.00 39.17 3.69
303 305 6.469782 TTTTATGAATCAAAGGGCATCTCC 57.530 37.500 0.00 0.00 0.00 3.71
304 306 8.302438 CCTATTTTATGAATCAAAGGGCATCTC 58.698 37.037 0.00 0.00 0.00 2.75
305 307 8.006564 TCCTATTTTATGAATCAAAGGGCATCT 58.993 33.333 0.00 0.00 0.00 2.90
306 308 8.181904 TCCTATTTTATGAATCAAAGGGCATC 57.818 34.615 0.00 0.00 0.00 3.91
307 309 8.731591 ATCCTATTTTATGAATCAAAGGGCAT 57.268 30.769 0.00 0.00 0.00 4.40
308 310 8.551682 AATCCTATTTTATGAATCAAAGGGCA 57.448 30.769 0.00 0.00 0.00 5.36
309 311 9.836864 AAAATCCTATTTTATGAATCAAAGGGC 57.163 29.630 0.00 0.00 0.00 5.19
359 361 8.187480 CGTCCACATTCCATATGAAAATAAACA 58.813 33.333 3.65 0.00 36.33 2.83
360 362 8.402472 TCGTCCACATTCCATATGAAAATAAAC 58.598 33.333 3.65 0.91 36.33 2.01
361 363 8.512966 TCGTCCACATTCCATATGAAAATAAA 57.487 30.769 3.65 0.00 36.33 1.40
362 364 8.690203 ATCGTCCACATTCCATATGAAAATAA 57.310 30.769 3.65 0.00 36.33 1.40
363 365 9.435688 CTATCGTCCACATTCCATATGAAAATA 57.564 33.333 3.65 0.00 36.33 1.40
364 366 7.391554 CCTATCGTCCACATTCCATATGAAAAT 59.608 37.037 3.65 0.95 36.33 1.82
365 367 6.710295 CCTATCGTCCACATTCCATATGAAAA 59.290 38.462 3.65 0.00 36.33 2.29
366 368 6.042666 TCCTATCGTCCACATTCCATATGAAA 59.957 38.462 3.65 0.00 36.33 2.69
367 369 5.542251 TCCTATCGTCCACATTCCATATGAA 59.458 40.000 3.65 0.00 37.38 2.57
368 370 5.083821 TCCTATCGTCCACATTCCATATGA 58.916 41.667 3.65 0.00 0.00 2.15
369 371 5.405935 TCCTATCGTCCACATTCCATATG 57.594 43.478 0.00 0.00 0.00 1.78
370 372 5.780282 TCTTCCTATCGTCCACATTCCATAT 59.220 40.000 0.00 0.00 0.00 1.78
371 373 5.144832 TCTTCCTATCGTCCACATTCCATA 58.855 41.667 0.00 0.00 0.00 2.74
372 374 3.967326 TCTTCCTATCGTCCACATTCCAT 59.033 43.478 0.00 0.00 0.00 3.41
373 375 3.371034 TCTTCCTATCGTCCACATTCCA 58.629 45.455 0.00 0.00 0.00 3.53
374 376 4.402056 TTCTTCCTATCGTCCACATTCC 57.598 45.455 0.00 0.00 0.00 3.01
375 377 6.763610 AGAAATTCTTCCTATCGTCCACATTC 59.236 38.462 0.00 0.00 31.28 2.67
376 378 6.653989 AGAAATTCTTCCTATCGTCCACATT 58.346 36.000 0.00 0.00 31.28 2.71
377 379 6.240549 AGAAATTCTTCCTATCGTCCACAT 57.759 37.500 0.00 0.00 31.28 3.21
378 380 5.677319 AGAAATTCTTCCTATCGTCCACA 57.323 39.130 0.00 0.00 31.28 4.17
379 381 6.591313 GAAGAAATTCTTCCTATCGTCCAC 57.409 41.667 21.66 0.00 45.34 4.02
397 399 9.658799 GGAATCGAATCCTATTCATATGAAGAA 57.341 33.333 21.97 12.42 35.61 2.52
412 414 1.202486 TGGTGCGTAGGAATCGAATCC 60.202 52.381 11.84 11.84 39.96 3.01
413 415 2.218953 TGGTGCGTAGGAATCGAATC 57.781 50.000 0.00 0.00 0.00 2.52
414 416 2.684001 TTGGTGCGTAGGAATCGAAT 57.316 45.000 0.00 0.00 0.00 3.34
415 417 2.028839 TCTTTGGTGCGTAGGAATCGAA 60.029 45.455 0.00 0.00 0.00 3.71
416 418 1.546923 TCTTTGGTGCGTAGGAATCGA 59.453 47.619 0.00 0.00 0.00 3.59
417 419 1.927174 CTCTTTGGTGCGTAGGAATCG 59.073 52.381 0.00 0.00 0.00 3.34
418 420 1.666189 GCTCTTTGGTGCGTAGGAATC 59.334 52.381 0.00 0.00 0.00 2.52
419 421 1.279271 AGCTCTTTGGTGCGTAGGAAT 59.721 47.619 0.00 0.00 37.09 3.01
420 422 0.685097 AGCTCTTTGGTGCGTAGGAA 59.315 50.000 0.00 0.00 37.09 3.36
421 423 0.246635 GAGCTCTTTGGTGCGTAGGA 59.753 55.000 6.43 0.00 37.09 2.94
422 424 0.247736 AGAGCTCTTTGGTGCGTAGG 59.752 55.000 11.45 0.00 37.09 3.18
423 425 1.067565 TGAGAGCTCTTTGGTGCGTAG 60.068 52.381 19.36 0.00 37.09 3.51
424 426 0.966179 TGAGAGCTCTTTGGTGCGTA 59.034 50.000 19.36 0.00 37.09 4.42
425 427 0.106708 TTGAGAGCTCTTTGGTGCGT 59.893 50.000 19.36 0.00 37.09 5.24
426 428 0.795085 CTTGAGAGCTCTTTGGTGCG 59.205 55.000 19.36 0.00 37.09 5.34
427 429 1.163554 CCTTGAGAGCTCTTTGGTGC 58.836 55.000 19.36 4.14 0.00 5.01
428 430 2.847327 TCCTTGAGAGCTCTTTGGTG 57.153 50.000 19.36 6.30 0.00 4.17
429 431 4.379302 AATTCCTTGAGAGCTCTTTGGT 57.621 40.909 19.36 3.15 0.00 3.67
430 432 5.718724 AAAATTCCTTGAGAGCTCTTTGG 57.281 39.130 19.36 18.95 0.00 3.28
431 433 6.155136 GGAAAAATTCCTTGAGAGCTCTTTG 58.845 40.000 19.36 10.78 46.57 2.77
432 434 6.338214 GGAAAAATTCCTTGAGAGCTCTTT 57.662 37.500 19.36 3.48 46.57 2.52
433 435 5.973899 GGAAAAATTCCTTGAGAGCTCTT 57.026 39.130 19.36 0.91 46.57 2.85
480 482 8.802267 CCCTTGGTTTAAAGAAATCTTGTATGA 58.198 33.333 0.00 0.00 36.12 2.15
481 483 8.802267 TCCCTTGGTTTAAAGAAATCTTGTATG 58.198 33.333 0.00 0.00 36.12 2.39
482 484 8.950007 TCCCTTGGTTTAAAGAAATCTTGTAT 57.050 30.769 0.00 0.00 36.12 2.29
483 485 7.450323 CCTCCCTTGGTTTAAAGAAATCTTGTA 59.550 37.037 0.00 0.00 36.12 2.41
484 486 6.267699 CCTCCCTTGGTTTAAAGAAATCTTGT 59.732 38.462 0.00 0.00 36.12 3.16
485 487 6.691508 CCTCCCTTGGTTTAAAGAAATCTTG 58.308 40.000 0.00 0.00 36.12 3.02
486 488 5.246203 GCCTCCCTTGGTTTAAAGAAATCTT 59.754 40.000 0.00 0.00 37.91 2.40
487 489 4.772624 GCCTCCCTTGGTTTAAAGAAATCT 59.227 41.667 0.00 0.00 0.00 2.40
488 490 4.081642 GGCCTCCCTTGGTTTAAAGAAATC 60.082 45.833 0.00 0.00 0.00 2.17
489 491 3.838317 GGCCTCCCTTGGTTTAAAGAAAT 59.162 43.478 0.00 0.00 0.00 2.17
490 492 3.116900 AGGCCTCCCTTGGTTTAAAGAAA 60.117 43.478 0.00 0.00 38.74 2.52
491 493 2.449345 AGGCCTCCCTTGGTTTAAAGAA 59.551 45.455 0.00 0.00 38.74 2.52
492 494 2.070573 AGGCCTCCCTTGGTTTAAAGA 58.929 47.619 0.00 0.00 38.74 2.52
493 495 2.604912 AGGCCTCCCTTGGTTTAAAG 57.395 50.000 0.00 0.00 38.74 1.85
503 505 2.197465 ACGAAAAGATAAGGCCTCCCT 58.803 47.619 5.23 0.00 45.77 4.20
504 506 2.711978 ACGAAAAGATAAGGCCTCCC 57.288 50.000 5.23 0.00 0.00 4.30
505 507 3.875727 GGTAACGAAAAGATAAGGCCTCC 59.124 47.826 5.23 0.00 0.00 4.30
506 508 4.510571 TGGTAACGAAAAGATAAGGCCTC 58.489 43.478 5.23 0.00 42.51 4.70
507 509 4.563140 TGGTAACGAAAAGATAAGGCCT 57.437 40.909 0.00 0.00 42.51 5.19
508 510 4.698780 AGTTGGTAACGAAAAGATAAGGCC 59.301 41.667 0.00 0.00 42.51 5.19
509 511 5.874895 AGTTGGTAACGAAAAGATAAGGC 57.125 39.130 0.00 0.00 42.51 4.35
510 512 7.385752 TGTGTAGTTGGTAACGAAAAGATAAGG 59.614 37.037 0.00 0.00 42.51 2.69
530 532 2.514592 CCCTGGCGCCATGTGTAG 60.515 66.667 32.87 17.37 0.00 2.74
584 586 5.524281 GCTCTTATGTTAGTTTACAGAGGGC 59.476 44.000 0.00 0.00 35.70 5.19
585 587 5.749109 CGCTCTTATGTTAGTTTACAGAGGG 59.251 44.000 0.00 0.00 30.36 4.30
586 588 6.331061 ACGCTCTTATGTTAGTTTACAGAGG 58.669 40.000 0.00 0.00 0.00 3.69
587 589 7.813852 AACGCTCTTATGTTAGTTTACAGAG 57.186 36.000 0.00 0.00 0.00 3.35
626 628 9.682465 GGGGAAAAGAAAGGGATATATATGTAC 57.318 37.037 0.00 0.00 0.00 2.90
627 629 9.643778 AGGGGAAAAGAAAGGGATATATATGTA 57.356 33.333 0.00 0.00 0.00 2.29
629 631 9.828691 AAAGGGGAAAAGAAAGGGATATATATG 57.171 33.333 0.00 0.00 0.00 1.78
691 4570 0.963856 GAGGTTACCGGGGGCTTTTG 60.964 60.000 6.32 0.00 0.00 2.44
872 4770 3.069158 GTGGTGTTATAGGCGGACTATGT 59.931 47.826 13.73 0.00 42.34 2.29
873 4771 3.554337 GGTGGTGTTATAGGCGGACTATG 60.554 52.174 13.73 0.00 42.34 2.23
966 4874 2.600731 CTCTCTCTCCCCGGCTCT 59.399 66.667 0.00 0.00 0.00 4.09
967 4875 2.520741 CCTCTCTCTCCCCGGCTC 60.521 72.222 0.00 0.00 0.00 4.70
974 4892 3.151022 CCCGGTGCCTCTCTCTCC 61.151 72.222 0.00 0.00 0.00 3.71
1048 4966 0.322366 GCTCCCTTCTTTCTGCTGCT 60.322 55.000 0.00 0.00 0.00 4.24
1056 4974 1.379044 CGCCATGGCTCCCTTCTTT 60.379 57.895 33.07 0.00 39.32 2.52
1677 5598 2.662535 ATCAATGGATTGGCCGATCA 57.337 45.000 30.29 18.45 40.66 2.92
1859 5783 9.356929 GAACAAACGAAAACAATCATTTCATTC 57.643 29.630 0.00 0.00 36.75 2.67
1860 5784 8.877779 TGAACAAACGAAAACAATCATTTCATT 58.122 25.926 0.00 0.00 36.75 2.57
1861 5785 8.417780 TGAACAAACGAAAACAATCATTTCAT 57.582 26.923 0.00 0.00 36.75 2.57
1862 5786 7.818493 TGAACAAACGAAAACAATCATTTCA 57.182 28.000 0.00 0.00 36.75 2.69
1863 5787 8.538856 TGATGAACAAACGAAAACAATCATTTC 58.461 29.630 0.00 0.00 34.25 2.17
1955 5895 3.442273 AGACCGTTTCAAGTTTCAAAGCA 59.558 39.130 0.00 0.00 0.00 3.91
2007 5947 1.170290 TTCGAGGACGTGTGAGCTGA 61.170 55.000 0.00 0.00 40.69 4.26
2156 6112 1.398390 CAATGCAGAAAGAGCCGGTAC 59.602 52.381 1.90 0.00 0.00 3.34
2162 6118 1.271656 AGTTGGCAATGCAGAAAGAGC 59.728 47.619 7.79 0.00 0.00 4.09
2180 6136 5.871834 AGACTTGGAGCTAGTATCGATAGT 58.128 41.667 16.68 16.68 37.40 2.12
2184 6140 4.425180 AGAGACTTGGAGCTAGTATCGA 57.575 45.455 4.53 0.00 38.53 3.59
2185 6141 5.508200 AAAGAGACTTGGAGCTAGTATCG 57.492 43.478 4.53 0.00 38.53 2.92
2211 6167 2.237643 TGGAGCTAGTATCCCGCAAAAA 59.762 45.455 12.09 0.00 35.86 1.94
2212 6168 1.834896 TGGAGCTAGTATCCCGCAAAA 59.165 47.619 12.09 0.00 35.86 2.44
2213 6169 1.491668 TGGAGCTAGTATCCCGCAAA 58.508 50.000 12.09 0.00 35.86 3.68
2214 6170 1.412710 CTTGGAGCTAGTATCCCGCAA 59.587 52.381 12.09 2.00 35.86 4.85
2215 6171 1.040646 CTTGGAGCTAGTATCCCGCA 58.959 55.000 12.09 0.00 35.86 5.69
2216 6172 1.000052 GACTTGGAGCTAGTATCCCGC 60.000 57.143 12.09 0.00 35.86 6.13
2217 6173 1.614413 GGACTTGGAGCTAGTATCCCG 59.386 57.143 12.09 7.12 35.86 5.14
2218 6174 1.972075 GGGACTTGGAGCTAGTATCCC 59.028 57.143 12.09 6.75 35.86 3.85
2219 6175 1.972075 GGGGACTTGGAGCTAGTATCC 59.028 57.143 8.71 8.71 37.35 2.59
2220 6176 2.679082 TGGGGACTTGGAGCTAGTATC 58.321 52.381 0.00 0.00 0.00 2.24
2221 6177 2.772515 GTTGGGGACTTGGAGCTAGTAT 59.227 50.000 0.00 0.00 0.00 2.12
2222 6178 2.185387 GTTGGGGACTTGGAGCTAGTA 58.815 52.381 0.00 0.00 0.00 1.82
2223 6179 0.984995 GTTGGGGACTTGGAGCTAGT 59.015 55.000 0.00 0.00 0.00 2.57
2224 6180 1.065854 CAGTTGGGGACTTGGAGCTAG 60.066 57.143 0.00 0.00 36.10 3.42
2225 6181 0.984230 CAGTTGGGGACTTGGAGCTA 59.016 55.000 0.00 0.00 36.10 3.32
2237 6193 1.741770 GTACTCGCAGCCAGTTGGG 60.742 63.158 0.00 0.00 40.85 4.12
2281 6237 1.839354 TCTCACATGGGCAGCATCTAA 59.161 47.619 0.00 0.00 0.00 2.10
2323 6279 1.130613 CGCGTGCACTTGCTACTTC 59.869 57.895 16.19 0.00 42.66 3.01
2327 6283 2.021584 CTCACGCGTGCACTTGCTA 61.022 57.895 33.63 13.44 42.66 3.49
2396 6352 1.961277 CGGATAATGCACGGAGGCC 60.961 63.158 0.00 0.00 0.00 5.19
2471 6427 0.455972 CTGTAATTTGCGCCAACCGG 60.456 55.000 4.18 0.00 37.44 5.28
2583 6540 2.009774 GTGCAGTACTAGGTTGCCATG 58.990 52.381 11.33 0.00 37.03 3.66
2584 6541 1.909302 AGTGCAGTACTAGGTTGCCAT 59.091 47.619 11.33 0.33 38.04 4.40
2585 6542 1.348064 AGTGCAGTACTAGGTTGCCA 58.652 50.000 11.33 0.46 38.04 4.92
2586 6543 2.496470 AGTAGTGCAGTACTAGGTTGCC 59.504 50.000 28.84 2.46 42.37 4.52
2587 6544 3.512680 CAGTAGTGCAGTACTAGGTTGC 58.487 50.000 29.26 3.90 42.37 4.17
2631 6588 2.031157 CCACGAACCTGCGAGAAAAATT 60.031 45.455 0.00 0.00 34.83 1.82
2709 6692 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2710 6693 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
2711 6694 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
2713 6696 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
2716 6699 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
2717 6700 9.567776 TTACAAAGTTGAGTCATCTATTTTGGA 57.432 29.630 14.35 6.88 40.00 3.53
2753 6736 8.717821 CGTCCAAAATAGATGACTCAACTTTAA 58.282 33.333 0.00 0.00 0.00 1.52
2754 6737 7.333423 CCGTCCAAAATAGATGACTCAACTTTA 59.667 37.037 0.00 0.00 0.00 1.85
2755 6738 6.149474 CCGTCCAAAATAGATGACTCAACTTT 59.851 38.462 0.00 0.00 0.00 2.66
2756 6739 5.643777 CCGTCCAAAATAGATGACTCAACTT 59.356 40.000 0.00 0.00 0.00 2.66
2757 6740 5.178797 CCGTCCAAAATAGATGACTCAACT 58.821 41.667 0.00 0.00 0.00 3.16
2758 6741 4.332819 CCCGTCCAAAATAGATGACTCAAC 59.667 45.833 0.00 0.00 0.00 3.18
2759 6742 4.513442 CCCGTCCAAAATAGATGACTCAA 58.487 43.478 0.00 0.00 0.00 3.02
2760 6743 3.118408 CCCCGTCCAAAATAGATGACTCA 60.118 47.826 0.00 0.00 0.00 3.41
2761 6744 3.134081 TCCCCGTCCAAAATAGATGACTC 59.866 47.826 0.00 0.00 0.00 3.36
2762 6745 3.112263 TCCCCGTCCAAAATAGATGACT 58.888 45.455 0.00 0.00 0.00 3.41
2763 6746 3.118371 ACTCCCCGTCCAAAATAGATGAC 60.118 47.826 0.00 0.00 0.00 3.06
2764 6747 3.112263 ACTCCCCGTCCAAAATAGATGA 58.888 45.455 0.00 0.00 0.00 2.92
2765 6748 3.560636 ACTCCCCGTCCAAAATAGATG 57.439 47.619 0.00 0.00 0.00 2.90
2766 6749 4.966805 TCTTACTCCCCGTCCAAAATAGAT 59.033 41.667 0.00 0.00 0.00 1.98
2767 6750 4.355549 TCTTACTCCCCGTCCAAAATAGA 58.644 43.478 0.00 0.00 0.00 1.98
2768 6751 4.404715 TCTCTTACTCCCCGTCCAAAATAG 59.595 45.833 0.00 0.00 0.00 1.73
2769 6752 4.355549 TCTCTTACTCCCCGTCCAAAATA 58.644 43.478 0.00 0.00 0.00 1.40
2770 6753 3.178865 TCTCTTACTCCCCGTCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
2771 6754 2.612000 TCTCTTACTCCCCGTCCAAAA 58.388 47.619 0.00 0.00 0.00 2.44
2772 6755 2.314071 TCTCTTACTCCCCGTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
2773 6756 2.544844 ATCTCTTACTCCCCGTCCAA 57.455 50.000 0.00 0.00 0.00 3.53
2774 6757 2.512896 ACTATCTCTTACTCCCCGTCCA 59.487 50.000 0.00 0.00 0.00 4.02
2775 6758 3.226682 ACTATCTCTTACTCCCCGTCC 57.773 52.381 0.00 0.00 0.00 4.79
2776 6759 4.712476 TGTACTATCTCTTACTCCCCGTC 58.288 47.826 0.00 0.00 0.00 4.79
2777 6760 4.785346 TGTACTATCTCTTACTCCCCGT 57.215 45.455 0.00 0.00 0.00 5.28
2778 6761 7.830201 AGATATTGTACTATCTCTTACTCCCCG 59.170 40.741 0.00 0.00 34.08 5.73
2779 6762 9.536510 AAGATATTGTACTATCTCTTACTCCCC 57.463 37.037 13.58 0.00 37.45 4.81
2786 6769 8.788806 CGGAGACAAGATATTGTACTATCTCTT 58.211 37.037 5.55 10.66 37.45 2.85
2787 6770 7.392113 CCGGAGACAAGATATTGTACTATCTCT 59.608 40.741 5.55 0.00 37.45 3.10
2788 6771 7.390996 TCCGGAGACAAGATATTGTACTATCTC 59.609 40.741 5.55 7.86 37.45 2.75
2789 6772 7.232188 TCCGGAGACAAGATATTGTACTATCT 58.768 38.462 5.55 0.00 39.59 1.98
2790 6773 7.450124 TCCGGAGACAAGATATTGTACTATC 57.550 40.000 5.55 2.66 34.90 2.08
2791 6774 9.529823 TTATCCGGAGACAAGATATTGTACTAT 57.470 33.333 11.34 0.00 34.90 2.12
2821 6804 3.698040 AGAGAAAAATATGCAGTGCTGGG 59.302 43.478 17.60 0.00 0.00 4.45
2986 6979 7.654568 TCACATTATTACATAGTACTCACCCG 58.345 38.462 0.00 0.00 0.00 5.28
2987 6980 9.640963 GATCACATTATTACATAGTACTCACCC 57.359 37.037 0.00 0.00 0.00 4.61
3020 7013 1.228124 CTTTCTGCGTGGTGGGGAA 60.228 57.895 0.00 0.00 0.00 3.97
3083 7076 4.074970 GTGTGAGGACATGGATCAAAGTT 58.925 43.478 0.00 0.00 33.63 2.66
3084 7077 3.328931 AGTGTGAGGACATGGATCAAAGT 59.671 43.478 0.00 0.00 33.63 2.66
3201 7194 7.322664 TCTGAGCAAATTAAATTCCATGGTTC 58.677 34.615 12.58 0.00 0.00 3.62
3244 7237 5.229887 GTCAAAATACGTCTCGCGGTATTAA 59.770 40.000 15.64 5.65 46.52 1.40
3325 7323 4.576216 ACTATGGCATCTCAAGTCTACG 57.424 45.455 1.65 0.00 0.00 3.51
3376 7420 3.865745 ACAGTCAGACAACTTCAAAGACG 59.134 43.478 2.66 0.00 31.61 4.18
3377 7421 6.701841 TGATACAGTCAGACAACTTCAAAGAC 59.298 38.462 2.66 0.00 31.80 3.01
3378 7422 6.816136 TGATACAGTCAGACAACTTCAAAGA 58.184 36.000 2.66 0.00 31.80 2.52
3379 7423 7.664082 ATGATACAGTCAGACAACTTCAAAG 57.336 36.000 2.66 0.00 40.92 2.77
3380 7424 7.819415 CCTATGATACAGTCAGACAACTTCAAA 59.181 37.037 2.66 0.00 40.92 2.69
3381 7425 7.178451 TCCTATGATACAGTCAGACAACTTCAA 59.822 37.037 2.66 0.00 40.92 2.69
3382 7426 6.663523 TCCTATGATACAGTCAGACAACTTCA 59.336 38.462 2.66 1.34 40.92 3.02
3383 7427 7.101652 TCCTATGATACAGTCAGACAACTTC 57.898 40.000 2.66 0.00 40.92 3.01
3384 7428 7.482169 TTCCTATGATACAGTCAGACAACTT 57.518 36.000 2.66 0.00 40.92 2.66
3385 7429 7.482169 TTTCCTATGATACAGTCAGACAACT 57.518 36.000 2.66 0.00 40.92 3.16
3386 7430 8.443937 GTTTTTCCTATGATACAGTCAGACAAC 58.556 37.037 2.66 0.00 40.92 3.32
3387 7431 8.154203 TGTTTTTCCTATGATACAGTCAGACAA 58.846 33.333 2.66 0.00 40.92 3.18
3415 7459 6.146673 CCGGATAACTTTTACGACATATTCCC 59.853 42.308 0.00 0.00 0.00 3.97
3654 7699 9.956640 TGAATTTTTAATGTGAGGCCATTTTAT 57.043 25.926 5.01 0.00 36.48 1.40
3670 7715 8.682710 CGACCATTCTCCCTAATGAATTTTTAA 58.317 33.333 0.00 0.00 38.84 1.52
3747 7799 5.049198 GTCCATGCGACATTGATCATAACAT 60.049 40.000 0.00 0.00 41.54 2.71
3759 7811 0.753262 GGTAGAGGTCCATGCGACAT 59.247 55.000 13.95 8.46 43.95 3.06
3883 7939 7.100409 GGTTAGAGATAAGTGGAAGGATATGC 58.900 42.308 0.00 0.00 0.00 3.14
3928 7984 7.725844 ACACTTCTTTGGTTCTGATTAATTCCT 59.274 33.333 0.00 0.00 0.00 3.36
4015 8116 8.668510 ATTATTCGTCAGTGCTATTTCAGAAT 57.331 30.769 0.00 0.00 0.00 2.40
4049 8152 9.379770 TCTCTCCTTATTTGTATCATCCACATA 57.620 33.333 0.00 0.00 0.00 2.29
4095 8198 8.652290 ACCTCTACCTCCTACATTCATATTTTC 58.348 37.037 0.00 0.00 0.00 2.29
4131 8241 4.759183 GGAAGATGGAGCCAATCTTATCAC 59.241 45.833 11.54 3.67 35.06 3.06
4159 8269 4.127171 GTTGTCCTTAGCACAGAAGAACA 58.873 43.478 0.00 0.00 0.00 3.18
4410 8520 3.896648 ATGTTGCAAAAGAATCGTCGT 57.103 38.095 0.00 0.00 0.00 4.34
4411 8521 5.172951 TGAAAATGTTGCAAAAGAATCGTCG 59.827 36.000 0.00 0.00 0.00 5.12
4607 8756 3.966154 TGGCGAGAGAATATTTCGAGTC 58.034 45.455 11.29 2.37 36.49 3.36
4665 8825 7.243487 CGATAACTGCAAACATAACAGTGAAT 58.757 34.615 0.00 0.00 43.63 2.57
4694 8854 1.566563 GCGCTCTAATCATGTGCCG 59.433 57.895 0.00 0.00 0.00 5.69
5220 9380 3.766691 TAGAACCAGGCGCCGACC 61.767 66.667 23.20 9.98 0.00 4.79
5311 9471 1.079819 CACCCACGAGCACGAAGAT 60.080 57.895 11.40 0.00 42.66 2.40
5421 9585 5.750067 CACAATTTCTTGTTCCAAGTTCCAG 59.250 40.000 4.08 0.00 43.05 3.86
5512 9676 3.435327 CACACGCTGCCACTAAATTAAGA 59.565 43.478 0.00 0.00 0.00 2.10
5595 9766 7.164122 ACTTCCATATGTATGAAGCTGTATGG 58.836 38.462 15.90 0.00 39.77 2.74
5961 10132 2.520982 CCGCCGGAGAGGATGGTA 60.521 66.667 5.05 0.00 45.00 3.25
6242 10413 1.900498 GGCAAGCTCACCAACTGCT 60.900 57.895 4.44 0.00 38.87 4.24
6395 10566 3.372123 TCGCCGATGTCAAGTCCA 58.628 55.556 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.