AutoCloner

Multiple sequence alignment - TraesCS6B01G176500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G176500	chr6B	100.000	2648	0	0	1	2648	192925204	192927851	0.000000e+00	4891
1	TraesCS6B01G176500	chr6B	98.733	947	11	1	1703	2648	599852721	599853667	0.000000e+00	1681
2	TraesCS6B01G176500	chr7B	98.947	950	6	3	1703	2648	426966889	426965940	0.000000e+00	1696
3	TraesCS6B01G176500	chr7B	83.145	884	105	22	821	1680	212419368	212418505	0.000000e+00	767
4	TraesCS6B01G176500	chr3A	98.733	947	11	1	1703	2648	47089082	47088136	0.000000e+00	1681
5	TraesCS6B01G176500	chr3A	98.630	949	9	2	1704	2648	213750247	213749299	0.000000e+00	1677
6	TraesCS6B01G176500	chr1A	98.733	947	10	2	1704	2648	473021415	473020469	0.000000e+00	1681
7	TraesCS6B01G176500	chr1A	98.526	950	10	3	1703	2648	579986882	579985933	0.000000e+00	1674
8	TraesCS6B01G176500	chr2B	98.431	956	9	5	1698	2648	143016320	143017274	0.000000e+00	1677
9	TraesCS6B01G176500	chr2B	90.361	166	16	0	557	722	49720408	49720243	4.440000e-53	219
10	TraesCS6B01G176500	chr2A	98.325	955	12	3	1698	2648	98894603	98893649	0.000000e+00	1672
11	TraesCS6B01G176500	chr2A	98.031	965	14	5	1686	2648	709743240	709744201	0.000000e+00	1672
12	TraesCS6B01G176500	chr6D	96.270	992	24	5	719	1699	106079623	106080612	0.000000e+00	1615
13	TraesCS6B01G176500	chr6D	87.525	505	35	8	10	498	106079124	106079616	2.300000e-155	558
14	TraesCS6B01G176500	chr6A	95.968	992	28	3	719	1699	129340595	129341585	0.000000e+00	1600
15	TraesCS6B01G176500	chr6A	84.659	352	38	12	1	350	129337966	129338303	1.170000e-88	337
16	TraesCS6B01G176500	chr6A	86.207	116	15	1	361	476	129338345	129338459	9.950000e-25	124
17	TraesCS6B01G176500	chr7A	83.391	873	96	25	821	1680	251254280	251253444	0.000000e+00	763
18	TraesCS6B01G176500	chr5A	74.854	513	106	17	1160	1650	321328886	321328375	7.430000e-51	211
19	TraesCS6B01G176500	chr3B	87.349	166	19	1	557	722	760557179	760557342	3.480000e-44	189
20	TraesCS6B01G176500	chr5B	85.556	180	25	1	552	731	590465056	590464878	1.250000e-43	187

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G176500	chr6B	192925204	192927851	2647	False	4891.0	4891	100.000000	1	2648	1	chr6B.!!$F1	2647
1	TraesCS6B01G176500	chr6B	599852721	599853667	946	False	1681.0	1681	98.733000	1703	2648	1	chr6B.!!$F2	945
2	TraesCS6B01G176500	chr7B	426965940	426966889	949	True	1696.0	1696	98.947000	1703	2648	1	chr7B.!!$R2	945
3	TraesCS6B01G176500	chr7B	212418505	212419368	863	True	767.0	767	83.145000	821	1680	1	chr7B.!!$R1	859
4	TraesCS6B01G176500	chr3A	47088136	47089082	946	True	1681.0	1681	98.733000	1703	2648	1	chr3A.!!$R1	945
5	TraesCS6B01G176500	chr3A	213749299	213750247	948	True	1677.0	1677	98.630000	1704	2648	1	chr3A.!!$R2	944
6	TraesCS6B01G176500	chr1A	473020469	473021415	946	True	1681.0	1681	98.733000	1704	2648	1	chr1A.!!$R1	944
7	TraesCS6B01G176500	chr1A	579985933	579986882	949	True	1674.0	1674	98.526000	1703	2648	1	chr1A.!!$R2	945
8	TraesCS6B01G176500	chr2B	143016320	143017274	954	False	1677.0	1677	98.431000	1698	2648	1	chr2B.!!$F1	950
9	TraesCS6B01G176500	chr2A	98893649	98894603	954	True	1672.0	1672	98.325000	1698	2648	1	chr2A.!!$R1	950
10	TraesCS6B01G176500	chr2A	709743240	709744201	961	False	1672.0	1672	98.031000	1686	2648	1	chr2A.!!$F1	962
11	TraesCS6B01G176500	chr6D	106079124	106080612	1488	False	1086.5	1615	91.897500	10	1699	2	chr6D.!!$F1	1689
12	TraesCS6B01G176500	chr6A	129337966	129341585	3619	False	687.0	1600	88.944667	1	1699	3	chr6A.!!$F1	1698
13	TraesCS6B01G176500	chr7A	251253444	251254280	836	True	763.0	763	83.391000	821	1680	1	chr7A.!!$R1	859
14	TraesCS6B01G176500	chr5A	321328375	321328886	511	True	211.0	211	74.854000	1160	1650	1	chr5A.!!$R1	490

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
586	2715	0.04109	CCAGCCCAATAAACCAGGGT	59.959	55.0	0.0	0.0	44.69	4.34	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1721	3894	3.976015	GGGGGACTATTCAACCAATTCA	58.024	45.455	0.0	0.0	0.0	2.57	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
72	73	3.438781	TCCACGTGCTCATATTCAAAACC	59.561	43.478	10.91	0.00	0.00	3.27
78	79	4.558860	GTGCTCATATTCAAAACCGAAAGC	59.441	41.667	0.00	0.00	0.00	3.51
96	97	1.982073	GCTCCGCTTGTTTCATCGGG	61.982	60.000	0.00	0.00	41.98	5.14
102	103	2.979813	CGCTTGTTTCATCGGGAAAAAG	59.020	45.455	5.02	10.58	46.53	2.27
109	110	6.212955	TGTTTCATCGGGAAAAAGTCATTTC	58.787	36.000	5.02	0.00	46.53	2.17
129	130	5.704217	TTCGTTTTCATTTTTGTTTCCGG	57.296	34.783	0.00	0.00	0.00	5.14
132	133	5.460419	TCGTTTTCATTTTTGTTTCCGGATG	59.540	36.000	4.15	0.00	0.00	3.51
209	220	2.505650	TTCCGCTCCATTTTCATCCA	57.494	45.000	0.00	0.00	0.00	3.41
266	277	2.573869	CACGATGGTGCTCCGACT	59.426	61.111	0.00	0.00	37.35	4.18
274	286	2.241160	TGGTGCTCCGACTGTTAGTTA	58.759	47.619	0.00	0.00	36.30	2.24
288	300	5.253096	ACTGTTAGTTAGATCCCCCACAAAT	59.747	40.000	0.00	0.00	0.00	2.32
294	306	3.652057	AGATCCCCCACAAATGTACTG	57.348	47.619	0.00	0.00	0.00	2.74
297	310	3.149005	TCCCCCACAAATGTACTGTTC	57.851	47.619	0.00	0.00	0.00	3.18
322	336	9.528489	TCTTTTAATTATTGTAGAAAGCCTGGT	57.472	29.630	0.00	0.00	0.00	4.00
459	505	8.327941	TGGATGAACTGATTAAGAAAGTCAAG	57.672	34.615	0.00	0.00	0.00	3.02
468	514	6.206634	TGATTAAGAAAGTCAAGGAAACGCAT	59.793	34.615	0.00	0.00	0.00	4.73
557	2686	9.860650	ATAGATATTTATTACTGGTTGTTGCCA	57.139	29.630	0.00	0.00	36.97	4.92
563	2692	3.820590	TGGTTGTTGCCAGTGACG	58.179	55.556	0.00	0.00	33.97	4.35
564	2693	1.078072	TGGTTGTTGCCAGTGACGT	60.078	52.632	0.00	0.00	33.97	4.34
565	2694	0.178301	TGGTTGTTGCCAGTGACGTA	59.822	50.000	0.00	0.00	33.97	3.57
566	2695	0.865769	GGTTGTTGCCAGTGACGTAG	59.134	55.000	0.00	0.00	0.00	3.51
567	2696	0.234884	GTTGTTGCCAGTGACGTAGC	59.765	55.000	0.00	0.00	0.00	3.58
568	2697	0.882927	TTGTTGCCAGTGACGTAGCC	60.883	55.000	0.00	0.00	0.00	3.93
569	2698	1.301401	GTTGCCAGTGACGTAGCCA	60.301	57.895	0.00	0.00	0.00	4.75
570	2699	1.005037	TTGCCAGTGACGTAGCCAG	60.005	57.895	0.00	0.00	0.00	4.85
571	2700	2.815647	GCCAGTGACGTAGCCAGC	60.816	66.667	0.00	0.00	0.00	4.85
572	2701	2.125512	CCAGTGACGTAGCCAGCC	60.126	66.667	0.00	0.00	0.00	4.85
573	2702	2.125512	CAGTGACGTAGCCAGCCC	60.126	66.667	0.00	0.00	0.00	5.19
574	2703	2.603473	AGTGACGTAGCCAGCCCA	60.603	61.111	0.00	0.00	0.00	5.36
575	2704	2.214216	AGTGACGTAGCCAGCCCAA	61.214	57.895	0.00	0.00	0.00	4.12
576	2705	1.078426	GTGACGTAGCCAGCCCAAT	60.078	57.895	0.00	0.00	0.00	3.16
577	2706	0.177141	GTGACGTAGCCAGCCCAATA	59.823	55.000	0.00	0.00	0.00	1.90
578	2707	0.906066	TGACGTAGCCAGCCCAATAA	59.094	50.000	0.00	0.00	0.00	1.40
579	2708	1.279558	TGACGTAGCCAGCCCAATAAA	59.720	47.619	0.00	0.00	0.00	1.40
580	2709	1.669265	GACGTAGCCAGCCCAATAAAC	59.331	52.381	0.00	0.00	0.00	2.01
581	2710	1.021968	CGTAGCCAGCCCAATAAACC	58.978	55.000	0.00	0.00	0.00	3.27
582	2711	1.680555	CGTAGCCAGCCCAATAAACCA	60.681	52.381	0.00	0.00	0.00	3.67
583	2712	2.024414	GTAGCCAGCCCAATAAACCAG	58.976	52.381	0.00	0.00	0.00	4.00
584	2713	0.324645	AGCCAGCCCAATAAACCAGG	60.325	55.000	0.00	0.00	0.00	4.45
585	2714	1.329913	GCCAGCCCAATAAACCAGGG	61.330	60.000	0.00	0.00	45.68	4.45
586	2715	0.041090	CCAGCCCAATAAACCAGGGT	59.959	55.000	0.00	0.00	44.69	4.34
587	2716	1.185315	CAGCCCAATAAACCAGGGTG	58.815	55.000	0.00	0.00	44.69	4.61
588	2717	0.783850	AGCCCAATAAACCAGGGTGT	59.216	50.000	0.00	0.00	44.69	4.16
589	2718	1.149077	AGCCCAATAAACCAGGGTGTT	59.851	47.619	0.00	0.00	44.69	3.32
590	2719	1.548719	GCCCAATAAACCAGGGTGTTC	59.451	52.381	0.00	0.00	44.69	3.18
591	2720	2.176045	CCCAATAAACCAGGGTGTTCC	58.824	52.381	0.00	0.00	37.81	3.62
592	2721	2.491825	CCCAATAAACCAGGGTGTTCCA	60.492	50.000	0.00	0.00	37.81	3.53
593	2722	3.440127	CCAATAAACCAGGGTGTTCCAT	58.560	45.455	0.00	0.00	38.24	3.41
594	2723	3.447229	CCAATAAACCAGGGTGTTCCATC	59.553	47.826	0.00	0.00	38.24	3.51
595	2724	4.085733	CAATAAACCAGGGTGTTCCATCA	58.914	43.478	0.00	0.00	38.24	3.07
596	2725	2.765689	AAACCAGGGTGTTCCATCAA	57.234	45.000	0.00	0.00	38.24	2.57
597	2726	2.999185	AACCAGGGTGTTCCATCAAT	57.001	45.000	0.00	0.00	38.24	2.57
598	2727	4.396357	AAACCAGGGTGTTCCATCAATA	57.604	40.909	0.00	0.00	38.24	1.90
599	2728	4.396357	AACCAGGGTGTTCCATCAATAA	57.604	40.909	0.00	0.00	38.24	1.40
600	2729	4.396357	ACCAGGGTGTTCCATCAATAAA	57.604	40.909	0.00	0.00	38.24	1.40
601	2730	4.746466	ACCAGGGTGTTCCATCAATAAAA	58.254	39.130	0.00	0.00	38.24	1.52
602	2731	5.151454	ACCAGGGTGTTCCATCAATAAAAA	58.849	37.500	0.00	0.00	38.24	1.94
603	2732	5.784906	ACCAGGGTGTTCCATCAATAAAAAT	59.215	36.000	0.00	0.00	38.24	1.82
604	2733	6.957020	ACCAGGGTGTTCCATCAATAAAAATA	59.043	34.615	0.00	0.00	38.24	1.40
605	2734	7.623278	ACCAGGGTGTTCCATCAATAAAAATAT	59.377	33.333	0.00	0.00	38.24	1.28
606	2735	8.485392	CCAGGGTGTTCCATCAATAAAAATATT	58.515	33.333	0.00	0.00	38.24	1.28
607	2736	9.889128	CAGGGTGTTCCATCAATAAAAATATTT	57.111	29.630	0.00	0.00	38.24	1.40
708	2837	2.286425	CCATCCTGGTCACCCCCT	60.286	66.667	0.00	0.00	31.35	4.79
709	2838	2.683465	CCATCCTGGTCACCCCCTG	61.683	68.421	0.00	0.00	31.35	4.45
710	2839	2.286425	ATCCTGGTCACCCCCTGG	60.286	66.667	0.00	0.00	43.18	4.45
713	2842	2.285368	CTGGTCACCCCCTGGCTA	60.285	66.667	0.00	0.00	33.59	3.93
714	2843	2.609610	TGGTCACCCCCTGGCTAC	60.610	66.667	0.00	0.00	33.59	3.58
715	2844	3.782443	GGTCACCCCCTGGCTACG	61.782	72.222	0.00	0.00	33.59	3.51
716	2845	4.468689	GTCACCCCCTGGCTACGC	62.469	72.222	0.00	0.00	33.59	4.42
774	2903	3.542712	AGTGAACAATGTAAAGCAGCG	57.457	42.857	0.00	0.00	0.00	5.18
775	2904	2.226437	AGTGAACAATGTAAAGCAGCGG	59.774	45.455	0.00	0.00	0.00	5.52
879	3008	4.023193	ACCGTCAAACAAGTCCAATCATTC	60.023	41.667	0.00	0.00	0.00	2.67
967	3101	4.713792	AGATCATTAGCCCCTTCGATTT	57.286	40.909	0.00	0.00	0.00	2.17
972	3106	3.924114	TTAGCCCCTTCGATTTCATCA	57.076	42.857	0.00	0.00	0.00	3.07
995	3132	2.133742	CTTGCAGGGCTCCAACGTTG	62.134	60.000	21.47	21.47	0.00	4.10
1300	3470	2.830827	CCGTGCACAACCCCAACA	60.831	61.111	18.64	0.00	0.00	3.33
1325	3495	2.413765	CTTCTCCTACGCCTCCGC	59.586	66.667	0.00	0.00	38.22	5.54
1699	3872	2.352960	GGAGAGCGTGATCAATGGTTTC	59.647	50.000	0.00	3.77	0.00	2.78
1700	3873	3.265791	GAGAGCGTGATCAATGGTTTCT	58.734	45.455	0.00	0.00	0.00	2.52
1701	3874	3.265791	AGAGCGTGATCAATGGTTTCTC	58.734	45.455	0.00	0.00	0.00	2.87
1713	3886	9.077885	GATCAATGGTTTCTCTATCTCTACTCT	57.922	37.037	0.00	0.00	0.00	3.24
1806	3986	0.546747	TTCTTCGTCCCACCTCCCAT	60.547	55.000	0.00	0.00	0.00	4.00

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
54	55	4.335082	TTCGGTTTTGAATATGAGCACG	57.665	40.909	0.00	0.00	0.00	5.34
78	79	0.391130	TCCCGATGAAACAAGCGGAG	60.391	55.000	14.51	7.68	46.29	4.63
89	90	4.069304	ACGAAATGACTTTTTCCCGATGA	58.931	39.130	0.00	0.00	33.02	2.92
92	93	4.904253	AAACGAAATGACTTTTTCCCGA	57.096	36.364	0.00	0.00	33.02	5.14
102	103	7.369542	CGGAAACAAAAATGAAAACGAAATGAC	59.630	33.333	0.00	0.00	0.00	3.06
109	110	5.332959	CCATCCGGAAACAAAAATGAAAACG	60.333	40.000	9.01	0.00	0.00	3.60
209	220	4.180057	GAGCTAGCTATTGCGCTGAATAT	58.820	43.478	19.38	0.00	45.42	1.28
262	273	3.028850	TGGGGGATCTAACTAACAGTCG	58.971	50.000	0.00	0.00	0.00	4.18
265	276	4.837093	TTGTGGGGGATCTAACTAACAG	57.163	45.455	0.00	0.00	0.00	3.16
266	277	5.014755	ACATTTGTGGGGGATCTAACTAACA	59.985	40.000	0.00	0.00	0.00	2.41
274	286	2.919602	ACAGTACATTTGTGGGGGATCT	59.080	45.455	0.00	0.00	0.00	2.75
297	310	9.788960	GACCAGGCTTTCTACAATAATTAAAAG	57.211	33.333	0.00	0.00	0.00	2.27
322	336	3.575247	TTCCCGGGCTTGCTTGGA	61.575	61.111	18.49	0.00	0.00	3.53
443	489	5.529430	TGCGTTTCCTTGACTTTCTTAATCA	59.471	36.000	0.00	0.00	0.00	2.57
551	2680	1.291877	CTGGCTACGTCACTGGCAAC	61.292	60.000	0.00	0.00	35.89	4.17
552	2681	1.005037	CTGGCTACGTCACTGGCAA	60.005	57.895	0.00	0.00	35.89	4.52
553	2682	2.656646	CTGGCTACGTCACTGGCA	59.343	61.111	0.00	0.00	35.07	4.92
554	2683	2.815647	GCTGGCTACGTCACTGGC	60.816	66.667	0.00	0.00	0.00	4.85
555	2684	2.125512	GGCTGGCTACGTCACTGG	60.126	66.667	0.00	0.00	0.00	4.00
556	2685	2.125512	GGGCTGGCTACGTCACTG	60.126	66.667	0.00	0.00	0.00	3.66
557	2686	1.553690	ATTGGGCTGGCTACGTCACT	61.554	55.000	0.00	0.00	0.00	3.41
558	2687	0.177141	TATTGGGCTGGCTACGTCAC	59.823	55.000	0.00	0.00	0.00	3.67
559	2688	0.906066	TTATTGGGCTGGCTACGTCA	59.094	50.000	0.00	0.00	0.00	4.35
560	2689	1.669265	GTTTATTGGGCTGGCTACGTC	59.331	52.381	0.00	0.00	0.00	4.34
561	2690	1.680860	GGTTTATTGGGCTGGCTACGT	60.681	52.381	0.00	0.00	0.00	3.57
562	2691	1.021968	GGTTTATTGGGCTGGCTACG	58.978	55.000	0.00	0.00	0.00	3.51
563	2692	2.024414	CTGGTTTATTGGGCTGGCTAC	58.976	52.381	0.00	0.00	0.00	3.58
564	2693	1.064017	CCTGGTTTATTGGGCTGGCTA	60.064	52.381	0.00	0.00	0.00	3.93
565	2694	0.324645	CCTGGTTTATTGGGCTGGCT	60.325	55.000	0.00	0.00	0.00	4.75
566	2695	1.329913	CCCTGGTTTATTGGGCTGGC	61.330	60.000	0.00	0.00	33.88	4.85
567	2696	0.041090	ACCCTGGTTTATTGGGCTGG	59.959	55.000	0.00	0.00	44.56	4.85
568	2697	1.185315	CACCCTGGTTTATTGGGCTG	58.815	55.000	0.00	0.00	44.56	4.85
569	2698	0.783850	ACACCCTGGTTTATTGGGCT	59.216	50.000	0.00	0.00	44.56	5.19
570	2699	1.548719	GAACACCCTGGTTTATTGGGC	59.451	52.381	0.00	0.00	44.56	5.36
571	2700	2.176045	GGAACACCCTGGTTTATTGGG	58.824	52.381	0.00	0.00	46.07	4.12
572	2701	2.883026	TGGAACACCCTGGTTTATTGG	58.117	47.619	0.00	0.00	35.38	3.16
665	2794	2.242196	TGGACCATCCTGGAATTTCTCC	59.758	50.000	0.00	1.62	40.96	3.71
666	2795	3.652057	TGGACCATCCTGGAATTTCTC	57.348	47.619	0.00	0.00	40.96	2.87
667	2796	3.373438	CCATGGACCATCCTGGAATTTCT	60.373	47.826	5.56	0.00	40.96	2.52
668	2797	2.961062	CCATGGACCATCCTGGAATTTC	59.039	50.000	5.56	0.00	40.96	2.17
669	2798	2.586838	TCCATGGACCATCCTGGAATTT	59.413	45.455	11.44	0.00	40.96	1.82
670	2799	2.091665	GTCCATGGACCATCCTGGAATT	60.092	50.000	31.37	0.00	41.86	2.17
671	2800	1.496429	GTCCATGGACCATCCTGGAAT	59.504	52.381	31.37	0.00	41.86	3.01
672	2801	0.918983	GTCCATGGACCATCCTGGAA	59.081	55.000	31.37	0.00	41.86	3.53
673	2802	2.620234	GTCCATGGACCATCCTGGA	58.380	57.895	31.37	10.73	40.96	3.86
711	2840	1.574428	GCAACAACCAGTGGCGTAG	59.426	57.895	9.78	0.00	37.44	3.51
712	2841	3.739167	GCAACAACCAGTGGCGTA	58.261	55.556	9.78	0.00	37.44	4.42
716	2845	1.981256	AACTAGGCAACAACCAGTGG	58.019	50.000	7.91	7.91	41.41	4.00
717	2846	4.759693	TCATAAACTAGGCAACAACCAGTG	59.240	41.667	0.00	0.00	41.41	3.66
774	2903	1.009900	CGTCGCCGTGTATCTCTCC	60.010	63.158	0.00	0.00	0.00	3.71
775	2904	1.009900	CCGTCGCCGTGTATCTCTC	60.010	63.158	0.00	0.00	0.00	3.20
798	2927	0.321671	GTTGGACCAGCTAGCAGTGA	59.678	55.000	18.83	0.09	0.00	3.41
967	3101	1.140452	GAGCCCTGCAAGAGATGATGA	59.860	52.381	0.00	0.00	34.07	2.92
972	3106	0.034670	GTTGGAGCCCTGCAAGAGAT	60.035	55.000	2.31	0.00	41.50	2.75
1133	3285	4.383861	CCAGCAGCAGGAGCACGA	62.384	66.667	0.00	0.00	45.49	4.35
1300	3470	0.971447	GCGTAGGAGAAGGTGACCCT	60.971	60.000	0.00	0.00	45.63	4.34
1306	3476	1.753463	CGGAGGCGTAGGAGAAGGT	60.753	63.158	0.00	0.00	0.00	3.50
1713	3886	8.912988	GGACTATTCAACCAATTCATCCATTAA	58.087	33.333	0.00	0.00	0.00	1.40
1721	3894	3.976015	GGGGGACTATTCAACCAATTCA	58.024	45.455	0.00	0.00	0.00	2.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.