Multiple sequence alignment - TraesCS6B01G175900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G175900 chr6B 100.000 3194 0 0 1 3194 192094270 192097463 0.000000e+00 5899.0
1 TraesCS6B01G175900 chr6B 78.063 506 64 12 1638 2129 525977323 525977795 3.500000e-70 276.0
2 TraesCS6B01G175900 chr6B 100.000 43 0 0 3522 3564 192097791 192097833 2.950000e-11 80.5
3 TraesCS6B01G175900 chr6D 93.473 2911 109 41 6 2886 105560092 105557233 0.000000e+00 4248.0
4 TraesCS6B01G175900 chr6D 96.532 173 6 0 3022 3194 105556549 105556377 1.620000e-73 287.0
5 TraesCS6B01G175900 chr6D 98.000 150 2 1 2878 3026 105556806 105556657 3.530000e-65 259.0
6 TraesCS6B01G175900 chr6D 79.710 414 39 17 1640 2044 352897894 352897517 1.270000e-64 257.0
7 TraesCS6B01G175900 chr6A 92.094 2669 98 50 236 2849 127613681 127611071 0.000000e+00 3655.0
8 TraesCS6B01G175900 chr6A 93.502 277 14 2 6 279 127613943 127613668 3.310000e-110 409.0
9 TraesCS6B01G175900 chr6A 91.912 136 10 1 3022 3157 127610524 127610390 4.700000e-44 189.0
10 TraesCS6B01G175900 chr6A 89.286 112 7 1 2851 2957 127611027 127610916 6.210000e-28 135.0
11 TraesCS6B01G175900 chr6A 100.000 57 0 0 2970 3026 127610660 127610604 4.870000e-19 106.0
12 TraesCS6B01G175900 chr6A 93.333 60 3 1 570 628 308173222 308173163 1.760000e-13 87.9
13 TraesCS6B01G175900 chr6A 95.349 43 2 0 3522 3564 127610100 127610058 6.380000e-08 69.4
14 TraesCS6B01G175900 chr7D 78.811 774 131 25 1716 2462 602096805 602096038 1.150000e-134 490.0
15 TraesCS6B01G175900 chr7A 78.562 779 126 32 1715 2462 693860045 693859277 3.220000e-130 475.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G175900 chr6B 192094270 192097833 3563 False 2989.750000 5899 100.000000 1 3564 2 chr6B.!!$F2 3563
1 TraesCS6B01G175900 chr6D 105556377 105560092 3715 True 1598.000000 4248 96.001667 6 3194 3 chr6D.!!$R2 3188
2 TraesCS6B01G175900 chr6A 127610058 127613943 3885 True 760.566667 3655 93.690500 6 3564 6 chr6A.!!$R2 3558
3 TraesCS6B01G175900 chr7D 602096038 602096805 767 True 490.000000 490 78.811000 1716 2462 1 chr7D.!!$R1 746
4 TraesCS6B01G175900 chr7A 693859277 693860045 768 True 475.000000 475 78.562000 1715 2462 1 chr7A.!!$R1 747

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
232 240 0.615850 GGTGCTATGGCCCTAGATCC 59.384 60.000 18.36 14.14 37.74 3.36 F
765 846 2.020239 TCCTACTCCTACCCTACTCCCT 60.020 54.545 0.00 0.00 0.00 4.20 F
1449 1545 1.062121 TGAGTATGGGGAGGAAGGAGG 60.062 57.143 0.00 0.00 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1380 1472 0.250166 ACACGGTCAGTTAACCCTGC 60.250 55.0 0.88 0.0 35.79 4.85 R
1597 1695 0.713883 GGCGTGTCATGTCGTACAAG 59.286 55.0 0.00 0.0 0.00 3.16 R
3077 4042 0.588252 CAGTGCGGAGGTTGTTTCAG 59.412 55.0 0.00 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 59 7.719633 CCTATATGGCTTTTAACTCTAGGCAAA 59.280 37.037 0.00 0.00 45.76 3.68
55 60 5.644977 ATGGCTTTTAACTCTAGGCAAAC 57.355 39.130 0.00 0.00 45.76 2.93
56 61 4.465886 TGGCTTTTAACTCTAGGCAAACA 58.534 39.130 0.00 0.00 40.87 2.83
58 63 5.538433 TGGCTTTTAACTCTAGGCAAACATT 59.462 36.000 0.00 0.00 40.87 2.71
59 64 5.863935 GGCTTTTAACTCTAGGCAAACATTG 59.136 40.000 0.00 0.00 34.85 2.82
81 86 3.939740 ACATAGTTCCTGGCATGTCAT 57.060 42.857 0.00 0.00 0.00 3.06
114 122 8.904099 AGCTATATGGGTAGTAAATTGTTCAC 57.096 34.615 0.00 0.00 0.00 3.18
116 124 8.774586 GCTATATGGGTAGTAAATTGTTCACTG 58.225 37.037 0.00 0.00 0.00 3.66
136 144 2.104111 TGCGTCTAATTAGGTCCCATGG 59.896 50.000 12.54 4.14 0.00 3.66
145 153 4.630382 TTAGGTCCCATGGGTAGTTCTA 57.370 45.455 30.28 19.89 36.47 2.10
158 166 8.612619 CATGGGTAGTTCTATCAACATGTTTAC 58.387 37.037 8.77 6.32 32.17 2.01
232 240 0.615850 GGTGCTATGGCCCTAGATCC 59.384 60.000 18.36 14.14 37.74 3.36
284 322 8.653338 CAATTTCAGAAAACAATTCCATGCTAG 58.347 33.333 0.00 0.00 0.00 3.42
295 334 8.396272 ACAATTCCATGCTAGTATATCAAACC 57.604 34.615 0.00 0.00 0.00 3.27
296 335 7.173218 ACAATTCCATGCTAGTATATCAAACCG 59.827 37.037 0.00 0.00 0.00 4.44
312 351 4.570772 TCAAACCGAGCAAGAATATAGCAC 59.429 41.667 0.00 0.00 0.00 4.40
330 370 3.193157 CACGAATGGAAGTGCTTTCAG 57.807 47.619 0.00 0.00 37.54 3.02
335 375 5.010012 ACGAATGGAAGTGCTTTCAGAAATT 59.990 36.000 0.00 0.00 37.54 1.82
345 385 6.982724 AGTGCTTTCAGAAATTGGAAAAGAAG 59.017 34.615 0.00 0.00 33.05 2.85
349 389 7.922811 GCTTTCAGAAATTGGAAAAGAAGAGAA 59.077 33.333 0.00 0.00 33.05 2.87
353 393 9.971922 TCAGAAATTGGAAAAGAAGAGAAATTC 57.028 29.630 0.00 0.00 0.00 2.17
354 394 9.978044 CAGAAATTGGAAAAGAAGAGAAATTCT 57.022 29.630 0.00 0.00 41.31 2.40
421 461 3.304911 TCTTCATCCTCTCCGTCATCT 57.695 47.619 0.00 0.00 0.00 2.90
462 537 3.370209 GGAGCACTAAAACCTACGGGAAT 60.370 47.826 0.00 0.00 36.25 3.01
488 563 8.121305 ACAAATCAATAATGGAGCACAAAGTA 57.879 30.769 0.00 0.00 0.00 2.24
497 573 4.318332 TGGAGCACAAAGTAGAACTGATG 58.682 43.478 0.00 0.00 0.00 3.07
500 576 5.152623 AGCACAAAGTAGAACTGATGCTA 57.847 39.130 9.83 0.00 38.73 3.49
520 596 4.705991 GCTACTAGTCACTAGTGGAAACCT 59.294 45.833 27.77 12.51 44.65 3.50
544 620 8.194769 CCTAAACCAAGTTTTAACTGAATGTGT 58.805 33.333 0.00 0.00 39.66 3.72
581 657 3.736433 CGACAGAGCAGATAAGAACAGGG 60.736 52.174 0.00 0.00 0.00 4.45
601 678 8.766492 ACAGGGATATATTTATTTGGGGACTA 57.234 34.615 0.00 0.00 0.00 2.59
686 767 7.431249 CAAGATGCATGATTATTTTAGTGCCT 58.569 34.615 2.46 0.00 0.00 4.75
721 802 7.801716 TTGTATATCACCCTGTTATTTCTGC 57.198 36.000 0.00 0.00 0.00 4.26
759 840 2.702759 CCCCTCTCCTACTCCTACCCTA 60.703 59.091 0.00 0.00 0.00 3.53
761 842 3.329277 CCTCTCCTACTCCTACCCTACT 58.671 54.545 0.00 0.00 0.00 2.57
765 846 2.020239 TCCTACTCCTACCCTACTCCCT 60.020 54.545 0.00 0.00 0.00 4.20
807 888 6.113411 CGTGTATAAATTCCCAGTTCCTTCT 58.887 40.000 0.00 0.00 0.00 2.85
834 915 3.360340 GACCACAGGCAGCAGCAC 61.360 66.667 2.65 0.00 44.61 4.40
846 927 2.746671 CAGCACCAGCAGCAGGAG 60.747 66.667 11.55 3.53 45.49 3.69
915 999 8.503196 CGCAAAAGTTGGCTGTAATCATATATA 58.497 33.333 0.00 0.00 0.00 0.86
963 1047 4.125703 GCTTGAGAGAGAGAGAGAGAGAG 58.874 52.174 0.00 0.00 0.00 3.20
964 1048 4.141846 GCTTGAGAGAGAGAGAGAGAGAGA 60.142 50.000 0.00 0.00 0.00 3.10
966 1050 4.871822 TGAGAGAGAGAGAGAGAGAGAGA 58.128 47.826 0.00 0.00 0.00 3.10
967 1051 4.892345 TGAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
968 1052 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
969 1053 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
970 1054 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
971 1055 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
972 1056 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
973 1057 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
974 1058 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
975 1059 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
976 1060 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
977 1061 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
978 1062 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
979 1063 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
980 1064 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
981 1065 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
982 1066 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
983 1067 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
984 1068 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
985 1069 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
986 1070 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
987 1071 5.714863 AGAGAGAGAGAGAGAGAGAGAGAT 58.285 45.833 0.00 0.00 0.00 2.75
988 1072 5.774690 AGAGAGAGAGAGAGAGAGAGAGATC 59.225 48.000 0.00 0.00 0.00 2.75
989 1073 4.522405 AGAGAGAGAGAGAGAGAGAGATCG 59.478 50.000 0.00 0.00 0.00 3.69
1190 1277 3.078305 AGGAGGAGGAGGAAGAAGAAGAA 59.922 47.826 0.00 0.00 0.00 2.52
1359 1446 5.462729 CAGTGATGTTGTGCAGCAAAATTAA 59.537 36.000 0.00 0.00 45.78 1.40
1361 1453 4.448395 TGATGTTGTGCAGCAAAATTAAGC 59.552 37.500 0.00 0.00 40.93 3.09
1435 1531 2.093447 GGTGCTGTAGGTTGCTGAGTAT 60.093 50.000 0.00 0.00 0.00 2.12
1438 1534 2.743183 GCTGTAGGTTGCTGAGTATGGG 60.743 54.545 0.00 0.00 0.00 4.00
1449 1545 1.062121 TGAGTATGGGGAGGAAGGAGG 60.062 57.143 0.00 0.00 0.00 4.30
1614 1712 3.557508 TGTACTTGTACGACATGACACG 58.442 45.455 0.00 4.93 0.00 4.49
1693 1791 4.814294 GCTCACCGTACGGGCTGG 62.814 72.222 35.86 22.77 40.62 4.85
1694 1792 3.379445 CTCACCGTACGGGCTGGT 61.379 66.667 35.86 14.00 40.62 4.00
1696 1794 3.998672 CACCGTACGGGCTGGTGT 61.999 66.667 35.86 12.43 46.36 4.16
1697 1795 2.283101 ACCGTACGGGCTGGTGTA 60.283 61.111 35.86 0.00 40.62 2.90
1698 1796 2.182537 CCGTACGGGCTGGTGTAC 59.817 66.667 27.00 0.00 38.03 2.90
1814 1912 4.657824 CGACCACGGCGTCCAACT 62.658 66.667 10.85 0.00 35.72 3.16
2173 2292 4.237445 CTCCTCCGAGCGTCCTTA 57.763 61.111 0.00 0.00 0.00 2.69
2572 2691 3.173240 GAGTTCTGACGCCGACGC 61.173 66.667 0.00 0.00 45.53 5.19
2742 2864 5.551760 AAAGAACAATATGGTCAGCTTCG 57.448 39.130 0.00 0.00 36.30 3.79
2747 2869 3.055094 ACAATATGGTCAGCTTCGGACTT 60.055 43.478 3.02 0.00 35.61 3.01
2783 2905 4.149511 TGGTTGTTCATCTGTCTCACAA 57.850 40.909 0.00 0.00 0.00 3.33
3077 4042 8.292448 TGAAGAAGAATTACAATCTGTCAAAGC 58.708 33.333 0.00 0.00 0.00 3.51
3109 4074 2.022129 GCACTGTCCGAGTTGACCG 61.022 63.158 0.00 0.00 34.25 4.79
3171 4136 4.074970 CAAACCTCACAACTATGGCTTCT 58.925 43.478 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.871775 CACAGCAACAATGTGTCCC 57.128 52.632 0.00 0.00 42.47 4.46
54 59 4.568072 TGCCAGGAACTATGTACAATGT 57.432 40.909 0.00 0.00 36.02 2.71
55 60 4.883585 ACATGCCAGGAACTATGTACAATG 59.116 41.667 0.00 0.00 36.02 2.82
56 61 5.116084 ACATGCCAGGAACTATGTACAAT 57.884 39.130 0.00 0.00 36.02 2.71
58 63 3.517500 TGACATGCCAGGAACTATGTACA 59.482 43.478 0.00 0.00 36.02 2.90
59 64 4.137116 TGACATGCCAGGAACTATGTAC 57.863 45.455 0.00 0.00 36.02 2.90
81 86 3.458118 ACTACCCATATAGCTTGTGCCAA 59.542 43.478 0.00 0.00 40.80 4.52
114 122 3.393800 CATGGGACCTAATTAGACGCAG 58.606 50.000 22.48 15.53 0.00 5.18
116 124 2.550208 CCCATGGGACCTAATTAGACGC 60.550 54.545 28.27 14.54 37.50 5.19
145 153 7.744087 TGTCTGCTTAAGTAAACATGTTGAT 57.256 32.000 12.82 0.00 0.00 2.57
158 166 5.938438 AGCTTCTCTTTTGTCTGCTTAAG 57.062 39.130 0.00 0.00 0.00 1.85
232 240 3.004734 AGCGGTTGGAATTGTTTTCTCAG 59.995 43.478 0.00 0.00 0.00 3.35
284 322 8.596380 GCTATATTCTTGCTCGGTTTGATATAC 58.404 37.037 0.00 0.00 0.00 1.47
295 334 4.143242 CCATTCGTGCTATATTCTTGCTCG 60.143 45.833 0.00 0.00 41.65 5.03
296 335 4.991056 TCCATTCGTGCTATATTCTTGCTC 59.009 41.667 0.00 0.00 0.00 4.26
312 351 4.488126 TTTCTGAAAGCACTTCCATTCG 57.512 40.909 0.00 0.00 32.53 3.34
335 375 9.712305 CTACAGTAGAATTTCTCTTCTTTTCCA 57.288 33.333 1.27 0.00 36.82 3.53
421 461 4.445453 CTCCAGCTGATTGTGTATAAGCA 58.555 43.478 17.39 0.00 42.51 3.91
462 537 8.121305 ACTTTGTGCTCCATTATTGATTTGTA 57.879 30.769 0.00 0.00 0.00 2.41
488 563 6.317642 CACTAGTGACTAGTAGCATCAGTTCT 59.682 42.308 23.51 0.00 44.37 3.01
497 573 4.705991 AGGTTTCCACTAGTGACTAGTAGC 59.294 45.833 23.51 17.21 44.37 3.58
500 576 6.014755 GGTTTAGGTTTCCACTAGTGACTAGT 60.015 42.308 24.68 19.01 46.75 2.57
520 596 8.192110 GGACACATTCAGTTAAAACTTGGTTTA 58.808 33.333 0.00 0.00 37.08 2.01
581 657 8.678199 GCAAGCTAGTCCCCAAATAAATATATC 58.322 37.037 0.00 0.00 0.00 1.63
594 671 0.475906 ATGATGGCAAGCTAGTCCCC 59.524 55.000 0.00 0.00 0.00 4.81
601 678 4.160642 TGATTGAGTATGATGGCAAGCT 57.839 40.909 0.00 0.00 0.00 3.74
686 767 5.014755 AGGGTGATATACAAAGGGACACAAA 59.985 40.000 0.00 0.00 0.00 2.83
732 813 4.208686 GTAGGAGAGGGGCGCGTG 62.209 72.222 8.43 0.00 0.00 5.34
733 814 4.444081 AGTAGGAGAGGGGCGCGT 62.444 66.667 8.43 0.00 0.00 6.01
742 823 3.325605 GGAGTAGGGTAGGAGTAGGAGA 58.674 54.545 0.00 0.00 0.00 3.71
743 824 2.376181 GGGAGTAGGGTAGGAGTAGGAG 59.624 59.091 0.00 0.00 0.00 3.69
744 825 2.020239 AGGGAGTAGGGTAGGAGTAGGA 60.020 54.545 0.00 0.00 0.00 2.94
747 828 3.050408 AGAGAGGGAGTAGGGTAGGAGTA 60.050 52.174 0.00 0.00 0.00 2.59
748 829 2.137702 GAGAGGGAGTAGGGTAGGAGT 58.862 57.143 0.00 0.00 0.00 3.85
759 840 0.787084 TTGACAGGGAGAGAGGGAGT 59.213 55.000 0.00 0.00 0.00 3.85
761 842 0.252284 GGTTGACAGGGAGAGAGGGA 60.252 60.000 0.00 0.00 0.00 4.20
765 846 1.075050 ACGTAGGTTGACAGGGAGAGA 59.925 52.381 0.00 0.00 0.00 3.10
807 888 2.061220 CCTGTGGTCTGCTTGGAGA 58.939 57.895 0.00 0.00 0.00 3.71
834 915 3.683966 CTCCTGCTCCTGCTGCTGG 62.684 68.421 18.44 18.44 46.49 4.85
844 925 0.673022 CTTGGTGAGTGCTCCTGCTC 60.673 60.000 0.00 0.00 40.48 4.26
845 926 1.123861 TCTTGGTGAGTGCTCCTGCT 61.124 55.000 0.00 0.00 40.48 4.24
846 927 0.673022 CTCTTGGTGAGTGCTCCTGC 60.673 60.000 0.00 0.00 37.99 4.85
915 999 4.769688 TCTACGAGCACCAATCAATCAAT 58.230 39.130 0.00 0.00 0.00 2.57
916 1000 4.081697 TCTCTACGAGCACCAATCAATCAA 60.082 41.667 0.00 0.00 0.00 2.57
918 1002 4.046938 TCTCTACGAGCACCAATCAATC 57.953 45.455 0.00 0.00 0.00 2.67
919 1003 4.437239 CTTCTCTACGAGCACCAATCAAT 58.563 43.478 0.00 0.00 0.00 2.57
920 1004 3.849911 CTTCTCTACGAGCACCAATCAA 58.150 45.455 0.00 0.00 0.00 2.57
921 1005 2.417379 GCTTCTCTACGAGCACCAATCA 60.417 50.000 0.00 0.00 0.00 2.57
922 1006 2.159170 AGCTTCTCTACGAGCACCAATC 60.159 50.000 0.00 0.00 0.00 2.67
923 1007 1.827969 AGCTTCTCTACGAGCACCAAT 59.172 47.619 0.00 0.00 0.00 3.16
924 1008 1.257743 AGCTTCTCTACGAGCACCAA 58.742 50.000 0.00 0.00 0.00 3.67
925 1009 1.067565 CAAGCTTCTCTACGAGCACCA 60.068 52.381 0.00 0.00 0.00 4.17
963 1047 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
964 1048 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
966 1050 4.522405 CGATCTCTCTCTCTCTCTCTCTCT 59.478 50.000 0.00 0.00 0.00 3.10
967 1051 4.279671 ACGATCTCTCTCTCTCTCTCTCTC 59.720 50.000 0.00 0.00 0.00 3.20
968 1052 4.219115 ACGATCTCTCTCTCTCTCTCTCT 58.781 47.826 0.00 0.00 0.00 3.10
969 1053 4.592485 ACGATCTCTCTCTCTCTCTCTC 57.408 50.000 0.00 0.00 0.00 3.20
970 1054 4.405680 TCAACGATCTCTCTCTCTCTCTCT 59.594 45.833 0.00 0.00 0.00 3.10
971 1055 4.693283 TCAACGATCTCTCTCTCTCTCTC 58.307 47.826 0.00 0.00 0.00 3.20
972 1056 4.753516 TCAACGATCTCTCTCTCTCTCT 57.246 45.455 0.00 0.00 0.00 3.10
973 1057 5.333339 CGAATCAACGATCTCTCTCTCTCTC 60.333 48.000 0.00 0.00 35.09 3.20
974 1058 4.511454 CGAATCAACGATCTCTCTCTCTCT 59.489 45.833 0.00 0.00 35.09 3.10
975 1059 4.509970 TCGAATCAACGATCTCTCTCTCTC 59.490 45.833 0.00 0.00 37.37 3.20
976 1060 4.447290 TCGAATCAACGATCTCTCTCTCT 58.553 43.478 0.00 0.00 37.37 3.10
977 1061 4.804608 TCGAATCAACGATCTCTCTCTC 57.195 45.455 0.00 0.00 37.37 3.20
987 1071 1.338655 TCGCCCATATCGAATCAACGA 59.661 47.619 0.00 0.00 46.04 3.85
988 1072 1.721389 CTCGCCCATATCGAATCAACG 59.279 52.381 0.00 0.00 35.38 4.10
989 1073 2.069273 CCTCGCCCATATCGAATCAAC 58.931 52.381 0.00 0.00 35.38 3.18
999 1083 4.533124 TCCTCGCCCTCGCCCATA 62.533 66.667 0.00 0.00 35.26 2.74
1081 1165 3.859414 GCGCTCCAGCTCCTCCAT 61.859 66.667 0.00 0.00 39.32 3.41
1372 1464 1.603802 CAGTTAACCCTGCTGTGTGTG 59.396 52.381 0.88 0.00 0.00 3.82
1380 1472 0.250166 ACACGGTCAGTTAACCCTGC 60.250 55.000 0.88 0.00 35.79 4.85
1435 1531 2.124996 CCACCTCCTTCCTCCCCA 59.875 66.667 0.00 0.00 0.00 4.96
1438 1534 1.690985 CTCCCCACCTCCTTCCTCC 60.691 68.421 0.00 0.00 0.00 4.30
1597 1695 0.713883 GGCGTGTCATGTCGTACAAG 59.286 55.000 0.00 0.00 0.00 3.16
1871 1969 4.760047 CGGGTGGCCGAGGAACAG 62.760 72.222 0.00 0.00 34.88 3.16
2419 2538 1.214062 CTCGTCGCAGGAGAAGCTT 59.786 57.895 0.00 0.00 32.18 3.74
2536 2655 2.355986 CCGGGGATCCACGAACAGA 61.356 63.158 37.71 0.00 0.00 3.41
2577 2696 4.081862 ACGGACGACATTAATTCTGGAAGA 60.082 41.667 0.00 0.00 44.68 2.87
2742 2864 4.097892 ACCAAGTTCATGTTGACAAAGTCC 59.902 41.667 0.00 0.00 0.00 3.85
2747 2869 5.398603 AACAACCAAGTTCATGTTGACAA 57.601 34.783 13.54 0.00 41.38 3.18
3077 4042 0.588252 CAGTGCGGAGGTTGTTTCAG 59.412 55.000 0.00 0.00 0.00 3.02
3109 4074 3.441572 ACTGTTGGATGCAGCAAGATTAC 59.558 43.478 3.51 0.00 37.47 1.89
3160 4125 3.327757 TCCTTCACAACAGAAGCCATAGT 59.672 43.478 0.00 0.00 42.84 2.12
3171 4136 2.844946 TGCTTCGATTCCTTCACAACA 58.155 42.857 0.00 0.00 0.00 3.33
3521 4486 2.338809 TGACCCTCATCACTTGGAGTT 58.661 47.619 0.00 0.00 0.00 3.01
3522 4487 2.030027 TGACCCTCATCACTTGGAGT 57.970 50.000 0.00 0.00 0.00 3.85
3523 4488 2.304180 ACTTGACCCTCATCACTTGGAG 59.696 50.000 0.00 0.00 0.00 3.86
3524 4489 2.038952 CACTTGACCCTCATCACTTGGA 59.961 50.000 0.00 0.00 0.00 3.53
3525 4490 2.224621 ACACTTGACCCTCATCACTTGG 60.225 50.000 0.00 0.00 0.00 3.61
3526 4491 3.131709 ACACTTGACCCTCATCACTTG 57.868 47.619 0.00 0.00 0.00 3.16
3527 4492 3.864789 AACACTTGACCCTCATCACTT 57.135 42.857 0.00 0.00 0.00 3.16
3528 4493 3.646162 TGTAACACTTGACCCTCATCACT 59.354 43.478 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.