Multiple sequence alignment - TraesCS6B01G175100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G175100 chr6B 100.000 3175 0 0 1 3175 190125294 190122120 0.000000e+00 5864.0
1 TraesCS6B01G175100 chr6A 90.107 2234 116 42 248 2422 126347349 126345162 0.000000e+00 2804.0
2 TraesCS6B01G175100 chr6A 90.993 433 30 5 2664 3094 126344678 126344253 2.750000e-160 575.0
3 TraesCS6B01G175100 chr6A 98.268 231 4 0 1 231 502928543 502928313 3.810000e-109 405.0
4 TraesCS6B01G175100 chr6A 97.447 235 6 0 1 235 199590068 199590302 4.930000e-108 401.0
5 TraesCS6B01G175100 chr6A 89.623 212 12 7 2426 2630 126344872 126344664 8.740000e-66 261.0
6 TraesCS6B01G175100 chr6D 91.542 1667 89 28 986 2630 104455204 104453568 0.000000e+00 2250.0
7 TraesCS6B01G175100 chr6D 88.128 716 41 30 248 939 104455905 104455210 0.000000e+00 811.0
8 TraesCS6B01G175100 chr6D 88.632 519 27 12 2666 3163 104453580 104453073 1.260000e-168 603.0
9 TraesCS6B01G175100 chr5B 97.863 234 5 0 1 234 505567782 505567549 3.810000e-109 405.0
10 TraesCS6B01G175100 chr3A 97.854 233 5 0 1 233 646678833 646678601 1.370000e-108 403.0
11 TraesCS6B01G175100 chr2A 97.854 233 5 0 1 233 80232316 80232548 1.370000e-108 403.0
12 TraesCS6B01G175100 chr2A 97.835 231 5 0 1 231 36414121 36414351 1.770000e-107 399.0
13 TraesCS6B01G175100 chr2B 97.835 231 5 0 1 231 27587067 27587297 1.770000e-107 399.0
14 TraesCS6B01G175100 chr1B 96.653 239 6 2 1 237 593922561 593922799 2.300000e-106 396.0
15 TraesCS6B01G175100 chr4B 95.902 244 8 2 1 242 650948968 650948725 8.250000e-106 394.0
16 TraesCS6B01G175100 chr7D 89.011 182 18 2 1686 1866 603848574 603848754 1.150000e-54 224.0
17 TraesCS6B01G175100 chr7D 87.179 195 21 4 1686 1878 603983230 603983422 5.330000e-53 219.0
18 TraesCS6B01G175100 chr7B 87.179 195 20 5 1686 1877 686850749 686850941 1.920000e-52 217.0
19 TraesCS6B01G175100 chr7B 87.912 182 20 2 1686 1866 686965770 686965590 2.480000e-51 213.0
20 TraesCS6B01G175100 chr7B 87.912 182 20 2 1686 1866 688163757 688163937 2.480000e-51 213.0
21 TraesCS6B01G175100 chr7A 87.179 195 20 5 1686 1877 696722783 696722591 1.920000e-52 217.0
22 TraesCS6B01G175100 chr7A 87.912 182 20 2 1686 1866 696553345 696553525 2.480000e-51 213.0
23 TraesCS6B01G175100 chr7A 80.451 133 10 6 1571 1688 696723031 696722900 1.570000e-13 87.9
24 TraesCS6B01G175100 chr7A 79.699 133 11 8 1571 1688 696623048 696622917 7.300000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G175100 chr6B 190122120 190125294 3174 True 5864.000000 5864 100.000 1 3175 1 chr6B.!!$R1 3174
1 TraesCS6B01G175100 chr6A 126344253 126347349 3096 True 1213.333333 2804 90.241 248 3094 3 chr6A.!!$R2 2846
2 TraesCS6B01G175100 chr6D 104453073 104455905 2832 True 1221.333333 2250 89.434 248 3163 3 chr6D.!!$R1 2915

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
239 240 0.034337 GTGACCAGCCTAACAACCGA 59.966 55.0 0.0 0.0 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2180 2245 0.025513 CGCGCAGTGTCTTCTAATGC 59.974 55.0 8.75 0.0 0.0 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.038154 TCCAATATAACTTTGCTTATGTGGC 57.962 36.000 0.00 0.00 30.10 5.01
26 27 6.605194 TCCAATATAACTTTGCTTATGTGGCA 59.395 34.615 0.00 0.00 37.97 4.92
27 28 7.287466 TCCAATATAACTTTGCTTATGTGGCAT 59.713 33.333 0.00 0.00 39.54 4.40
28 29 7.383029 CCAATATAACTTTGCTTATGTGGCATG 59.617 37.037 0.00 0.00 39.54 4.06
29 30 2.660189 ACTTTGCTTATGTGGCATGC 57.340 45.000 9.90 9.90 39.54 4.06
30 31 1.894466 ACTTTGCTTATGTGGCATGCA 59.106 42.857 21.36 2.54 39.54 3.96
31 32 2.498481 ACTTTGCTTATGTGGCATGCAT 59.502 40.909 21.36 7.16 39.54 3.96
32 33 3.055675 ACTTTGCTTATGTGGCATGCATT 60.056 39.130 21.36 3.04 39.54 3.56
33 34 3.613494 TTGCTTATGTGGCATGCATTT 57.387 38.095 21.36 3.42 39.54 2.32
34 35 4.732672 TTGCTTATGTGGCATGCATTTA 57.267 36.364 21.36 2.63 39.54 1.40
35 36 4.732672 TGCTTATGTGGCATGCATTTAA 57.267 36.364 21.36 10.21 34.56 1.52
36 37 5.279255 TGCTTATGTGGCATGCATTTAAT 57.721 34.783 21.36 7.83 34.56 1.40
37 38 5.051153 TGCTTATGTGGCATGCATTTAATG 58.949 37.500 21.36 0.00 34.56 1.90
38 39 5.163437 TGCTTATGTGGCATGCATTTAATGA 60.163 36.000 21.36 1.61 34.56 2.57
39 40 5.754406 GCTTATGTGGCATGCATTTAATGAA 59.246 36.000 21.36 0.00 0.00 2.57
40 41 6.073980 GCTTATGTGGCATGCATTTAATGAAG 60.074 38.462 21.36 12.17 0.00 3.02
41 42 5.601583 ATGTGGCATGCATTTAATGAAGA 57.398 34.783 21.36 0.00 0.00 2.87
42 43 5.001237 TGTGGCATGCATTTAATGAAGAG 57.999 39.130 21.36 0.00 0.00 2.85
43 44 4.705991 TGTGGCATGCATTTAATGAAGAGA 59.294 37.500 21.36 0.00 0.00 3.10
44 45 5.163591 TGTGGCATGCATTTAATGAAGAGAG 60.164 40.000 21.36 0.00 0.00 3.20
45 46 5.066893 GTGGCATGCATTTAATGAAGAGAGA 59.933 40.000 21.36 0.00 0.00 3.10
46 47 5.298527 TGGCATGCATTTAATGAAGAGAGAG 59.701 40.000 21.36 0.00 0.00 3.20
47 48 5.278364 GGCATGCATTTAATGAAGAGAGAGG 60.278 44.000 21.36 0.00 0.00 3.69
48 49 5.298777 GCATGCATTTAATGAAGAGAGAGGT 59.701 40.000 14.21 0.00 0.00 3.85
49 50 6.726230 CATGCATTTAATGAAGAGAGAGGTG 58.274 40.000 9.36 0.00 0.00 4.00
50 51 5.809001 TGCATTTAATGAAGAGAGAGGTGT 58.191 37.500 9.36 0.00 0.00 4.16
51 52 6.240894 TGCATTTAATGAAGAGAGAGGTGTT 58.759 36.000 9.36 0.00 0.00 3.32
52 53 6.716628 TGCATTTAATGAAGAGAGAGGTGTTT 59.283 34.615 9.36 0.00 0.00 2.83
53 54 7.025963 GCATTTAATGAAGAGAGAGGTGTTTG 58.974 38.462 9.36 0.00 0.00 2.93
54 55 7.308830 GCATTTAATGAAGAGAGAGGTGTTTGT 60.309 37.037 9.36 0.00 0.00 2.83
55 56 7.496529 TTTAATGAAGAGAGAGGTGTTTGTG 57.503 36.000 0.00 0.00 0.00 3.33
56 57 3.475566 TGAAGAGAGAGGTGTTTGTGG 57.524 47.619 0.00 0.00 0.00 4.17
57 58 2.771943 TGAAGAGAGAGGTGTTTGTGGT 59.228 45.455 0.00 0.00 0.00 4.16
58 59 3.964688 TGAAGAGAGAGGTGTTTGTGGTA 59.035 43.478 0.00 0.00 0.00 3.25
59 60 4.407621 TGAAGAGAGAGGTGTTTGTGGTAA 59.592 41.667 0.00 0.00 0.00 2.85
60 61 4.338379 AGAGAGAGGTGTTTGTGGTAAC 57.662 45.455 0.00 0.00 0.00 2.50
61 62 3.967987 AGAGAGAGGTGTTTGTGGTAACT 59.032 43.478 0.00 0.00 37.61 2.24
62 63 5.145564 AGAGAGAGGTGTTTGTGGTAACTA 58.854 41.667 0.00 0.00 37.61 2.24
63 64 5.244178 AGAGAGAGGTGTTTGTGGTAACTAG 59.756 44.000 0.00 0.00 37.61 2.57
64 65 3.995048 GAGAGGTGTTTGTGGTAACTAGC 59.005 47.826 0.00 0.00 37.61 3.42
65 66 3.646637 AGAGGTGTTTGTGGTAACTAGCT 59.353 43.478 0.00 0.00 37.61 3.32
66 67 4.836736 AGAGGTGTTTGTGGTAACTAGCTA 59.163 41.667 0.00 0.00 37.61 3.32
67 68 5.306160 AGAGGTGTTTGTGGTAACTAGCTAA 59.694 40.000 0.00 0.00 37.61 3.09
68 69 5.548406 AGGTGTTTGTGGTAACTAGCTAAG 58.452 41.667 0.00 0.00 37.61 2.18
69 70 5.071384 AGGTGTTTGTGGTAACTAGCTAAGT 59.929 40.000 0.00 0.00 41.49 2.24
71 72 6.930722 GGTGTTTGTGGTAACTAGCTAAGTTA 59.069 38.462 10.09 10.09 46.85 2.24
80 81 5.672421 AACTAGCTAAGTTACCGGAACAT 57.328 39.130 9.46 4.03 46.85 2.71
81 82 5.259832 ACTAGCTAAGTTACCGGAACATC 57.740 43.478 9.46 0.00 40.86 3.06
82 83 4.708421 ACTAGCTAAGTTACCGGAACATCA 59.292 41.667 9.46 0.00 40.86 3.07
83 84 4.755266 AGCTAAGTTACCGGAACATCAT 57.245 40.909 9.46 0.00 40.86 2.45
84 85 5.864418 AGCTAAGTTACCGGAACATCATA 57.136 39.130 9.46 0.92 40.86 2.15
85 86 5.598769 AGCTAAGTTACCGGAACATCATAC 58.401 41.667 9.46 0.00 40.86 2.39
86 87 5.128171 AGCTAAGTTACCGGAACATCATACA 59.872 40.000 9.46 0.00 40.86 2.29
87 88 5.233689 GCTAAGTTACCGGAACATCATACAC 59.766 44.000 9.46 0.00 40.86 2.90
88 89 5.416271 AAGTTACCGGAACATCATACACT 57.584 39.130 9.46 0.00 40.86 3.55
89 90 5.007385 AGTTACCGGAACATCATACACTC 57.993 43.478 9.46 0.00 40.86 3.51
90 91 2.981859 ACCGGAACATCATACACTCC 57.018 50.000 9.46 0.00 0.00 3.85
91 92 2.184533 ACCGGAACATCATACACTCCA 58.815 47.619 9.46 0.00 0.00 3.86
92 93 2.569853 ACCGGAACATCATACACTCCAA 59.430 45.455 9.46 0.00 0.00 3.53
93 94 3.198068 CCGGAACATCATACACTCCAAG 58.802 50.000 0.00 0.00 0.00 3.61
94 95 3.118775 CCGGAACATCATACACTCCAAGA 60.119 47.826 0.00 0.00 0.00 3.02
95 96 4.503910 CGGAACATCATACACTCCAAGAA 58.496 43.478 0.00 0.00 0.00 2.52
96 97 4.935205 CGGAACATCATACACTCCAAGAAA 59.065 41.667 0.00 0.00 0.00 2.52
97 98 5.163854 CGGAACATCATACACTCCAAGAAAC 60.164 44.000 0.00 0.00 0.00 2.78
98 99 5.705441 GGAACATCATACACTCCAAGAAACA 59.295 40.000 0.00 0.00 0.00 2.83
99 100 6.206634 GGAACATCATACACTCCAAGAAACAA 59.793 38.462 0.00 0.00 0.00 2.83
100 101 7.094205 GGAACATCATACACTCCAAGAAACAAT 60.094 37.037 0.00 0.00 0.00 2.71
101 102 7.149569 ACATCATACACTCCAAGAAACAATG 57.850 36.000 0.00 0.00 0.00 2.82
102 103 6.942005 ACATCATACACTCCAAGAAACAATGA 59.058 34.615 0.00 0.00 0.00 2.57
103 104 7.120285 ACATCATACACTCCAAGAAACAATGAG 59.880 37.037 0.00 0.00 0.00 2.90
104 105 6.533730 TCATACACTCCAAGAAACAATGAGT 58.466 36.000 0.00 0.00 36.77 3.41
105 106 6.650807 TCATACACTCCAAGAAACAATGAGTC 59.349 38.462 0.00 0.00 34.21 3.36
106 107 5.041191 ACACTCCAAGAAACAATGAGTCT 57.959 39.130 0.00 0.00 34.21 3.24
107 108 6.174720 ACACTCCAAGAAACAATGAGTCTA 57.825 37.500 0.00 0.00 34.21 2.59
108 109 6.773638 ACACTCCAAGAAACAATGAGTCTAT 58.226 36.000 0.00 0.00 34.21 1.98
109 110 7.907389 ACACTCCAAGAAACAATGAGTCTATA 58.093 34.615 0.00 0.00 34.21 1.31
110 111 8.375506 ACACTCCAAGAAACAATGAGTCTATAA 58.624 33.333 0.00 0.00 34.21 0.98
111 112 8.660373 CACTCCAAGAAACAATGAGTCTATAAC 58.340 37.037 0.00 0.00 34.21 1.89
112 113 7.824779 ACTCCAAGAAACAATGAGTCTATAACC 59.175 37.037 0.00 0.00 30.81 2.85
113 114 7.918076 TCCAAGAAACAATGAGTCTATAACCT 58.082 34.615 0.00 0.00 0.00 3.50
114 115 9.042450 TCCAAGAAACAATGAGTCTATAACCTA 57.958 33.333 0.00 0.00 0.00 3.08
115 116 9.667107 CCAAGAAACAATGAGTCTATAACCTAA 57.333 33.333 0.00 0.00 0.00 2.69
136 137 9.353431 ACCTAATAAATACATCATTGCATGACA 57.647 29.630 0.00 0.00 43.01 3.58
137 138 9.616634 CCTAATAAATACATCATTGCATGACAC 57.383 33.333 0.00 0.00 43.01 3.67
141 142 7.628769 AAATACATCATTGCATGACACTACA 57.371 32.000 0.00 0.00 43.01 2.74
142 143 7.812690 AATACATCATTGCATGACACTACAT 57.187 32.000 0.00 0.00 43.01 2.29
143 144 8.907222 AATACATCATTGCATGACACTACATA 57.093 30.769 0.00 0.00 43.01 2.29
144 145 6.856135 ACATCATTGCATGACACTACATAG 57.144 37.500 0.00 0.00 43.01 2.23
145 146 6.585416 ACATCATTGCATGACACTACATAGA 58.415 36.000 0.00 0.00 43.01 1.98
146 147 7.222161 ACATCATTGCATGACACTACATAGAT 58.778 34.615 0.00 0.00 43.01 1.98
147 148 7.172703 ACATCATTGCATGACACTACATAGATG 59.827 37.037 0.00 0.00 43.01 2.90
148 149 6.585416 TCATTGCATGACACTACATAGATGT 58.415 36.000 0.00 0.08 38.37 3.06
149 150 7.049754 TCATTGCATGACACTACATAGATGTT 58.950 34.615 0.00 0.00 36.98 2.71
150 151 6.908870 TTGCATGACACTACATAGATGTTC 57.091 37.500 0.00 0.00 41.97 3.18
151 152 5.359756 TGCATGACACTACATAGATGTTCC 58.640 41.667 0.00 0.00 41.97 3.62
152 153 5.129320 TGCATGACACTACATAGATGTTCCT 59.871 40.000 0.00 0.00 41.97 3.36
153 154 6.323739 TGCATGACACTACATAGATGTTCCTA 59.676 38.462 0.00 0.00 41.97 2.94
154 155 6.642950 GCATGACACTACATAGATGTTCCTAC 59.357 42.308 0.00 0.00 41.97 3.18
155 156 6.710597 TGACACTACATAGATGTTCCTACC 57.289 41.667 0.00 0.00 41.97 3.18
156 157 5.597182 TGACACTACATAGATGTTCCTACCC 59.403 44.000 0.00 0.00 41.97 3.69
157 158 5.525484 ACACTACATAGATGTTCCTACCCA 58.475 41.667 0.00 0.00 41.97 4.51
158 159 5.363005 ACACTACATAGATGTTCCTACCCAC 59.637 44.000 0.00 0.00 41.97 4.61
159 160 5.598830 CACTACATAGATGTTCCTACCCACT 59.401 44.000 0.00 0.00 41.97 4.00
160 161 6.776116 CACTACATAGATGTTCCTACCCACTA 59.224 42.308 0.00 0.00 41.97 2.74
161 162 7.451877 CACTACATAGATGTTCCTACCCACTAT 59.548 40.741 0.00 0.00 41.97 2.12
162 163 6.672266 ACATAGATGTTCCTACCCACTATG 57.328 41.667 0.00 0.00 37.90 2.23
163 164 5.544176 ACATAGATGTTCCTACCCACTATGG 59.456 44.000 0.81 0.00 37.90 2.74
164 165 4.280789 AGATGTTCCTACCCACTATGGA 57.719 45.455 0.00 0.00 40.96 3.41
165 166 4.227197 AGATGTTCCTACCCACTATGGAG 58.773 47.826 0.00 0.00 40.96 3.86
166 167 2.759355 TGTTCCTACCCACTATGGAGG 58.241 52.381 0.00 0.00 40.96 4.30
167 168 2.045326 TGTTCCTACCCACTATGGAGGT 59.955 50.000 0.00 1.66 40.96 3.85
168 169 3.272818 TGTTCCTACCCACTATGGAGGTA 59.727 47.826 0.00 3.53 40.96 3.08
174 175 4.341863 ACCCACTATGGAGGTAGTAACA 57.658 45.455 0.00 0.00 40.96 2.41
175 176 4.892198 ACCCACTATGGAGGTAGTAACAT 58.108 43.478 0.00 0.00 40.96 2.71
176 177 6.034442 ACCCACTATGGAGGTAGTAACATA 57.966 41.667 0.00 0.00 40.96 2.29
177 178 6.075984 ACCCACTATGGAGGTAGTAACATAG 58.924 44.000 8.52 8.52 45.07 2.23
183 184 8.795842 CTATGGAGGTAGTAACATAGTCTAGG 57.204 42.308 0.00 0.00 38.48 3.02
184 185 5.950023 TGGAGGTAGTAACATAGTCTAGGG 58.050 45.833 0.00 0.00 0.00 3.53
185 186 5.673574 TGGAGGTAGTAACATAGTCTAGGGA 59.326 44.000 0.00 0.00 0.00 4.20
186 187 6.160992 TGGAGGTAGTAACATAGTCTAGGGAA 59.839 42.308 0.00 0.00 0.00 3.97
187 188 6.716173 GGAGGTAGTAACATAGTCTAGGGAAG 59.284 46.154 0.00 0.00 0.00 3.46
188 189 7.223472 AGGTAGTAACATAGTCTAGGGAAGT 57.777 40.000 0.00 0.00 0.00 3.01
189 190 7.061688 AGGTAGTAACATAGTCTAGGGAAGTG 58.938 42.308 0.00 0.00 0.00 3.16
190 191 6.832900 GGTAGTAACATAGTCTAGGGAAGTGT 59.167 42.308 0.00 0.00 0.00 3.55
191 192 6.777213 AGTAACATAGTCTAGGGAAGTGTG 57.223 41.667 0.00 0.00 0.00 3.82
192 193 6.491383 AGTAACATAGTCTAGGGAAGTGTGA 58.509 40.000 0.00 0.00 0.00 3.58
193 194 6.952358 AGTAACATAGTCTAGGGAAGTGTGAA 59.048 38.462 0.00 0.00 0.00 3.18
194 195 5.923733 ACATAGTCTAGGGAAGTGTGAAG 57.076 43.478 0.00 0.00 0.00 3.02
195 196 5.334421 ACATAGTCTAGGGAAGTGTGAAGT 58.666 41.667 0.00 0.00 0.00 3.01
196 197 5.780793 ACATAGTCTAGGGAAGTGTGAAGTT 59.219 40.000 0.00 0.00 0.00 2.66
197 198 6.952358 ACATAGTCTAGGGAAGTGTGAAGTTA 59.048 38.462 0.00 0.00 0.00 2.24
198 199 5.725325 AGTCTAGGGAAGTGTGAAGTTAC 57.275 43.478 0.00 0.00 0.00 2.50
199 200 5.395611 AGTCTAGGGAAGTGTGAAGTTACT 58.604 41.667 0.00 0.00 0.00 2.24
200 201 6.550163 AGTCTAGGGAAGTGTGAAGTTACTA 58.450 40.000 0.00 0.00 0.00 1.82
201 202 6.660094 AGTCTAGGGAAGTGTGAAGTTACTAG 59.340 42.308 0.00 0.00 0.00 2.57
202 203 4.538746 AGGGAAGTGTGAAGTTACTAGC 57.461 45.455 0.00 0.00 0.00 3.42
203 204 4.161102 AGGGAAGTGTGAAGTTACTAGCT 58.839 43.478 0.00 0.00 0.00 3.32
204 205 4.593634 AGGGAAGTGTGAAGTTACTAGCTT 59.406 41.667 0.00 0.00 0.00 3.74
205 206 5.778750 AGGGAAGTGTGAAGTTACTAGCTTA 59.221 40.000 0.00 0.00 0.00 3.09
206 207 6.440965 AGGGAAGTGTGAAGTTACTAGCTTAT 59.559 38.462 0.00 0.00 0.00 1.73
207 208 6.535508 GGGAAGTGTGAAGTTACTAGCTTATG 59.464 42.308 0.00 0.00 0.00 1.90
208 209 7.097834 GGAAGTGTGAAGTTACTAGCTTATGT 58.902 38.462 0.00 0.00 0.00 2.29
209 210 7.603024 GGAAGTGTGAAGTTACTAGCTTATGTT 59.397 37.037 0.00 0.00 0.00 2.71
210 211 8.535690 AAGTGTGAAGTTACTAGCTTATGTTC 57.464 34.615 0.00 0.00 0.00 3.18
211 212 7.897864 AGTGTGAAGTTACTAGCTTATGTTCT 58.102 34.615 0.00 0.00 0.00 3.01
212 213 8.368668 AGTGTGAAGTTACTAGCTTATGTTCTT 58.631 33.333 0.00 0.00 0.00 2.52
213 214 8.436200 GTGTGAAGTTACTAGCTTATGTTCTTG 58.564 37.037 0.00 0.00 0.00 3.02
214 215 7.117812 TGTGAAGTTACTAGCTTATGTTCTTGC 59.882 37.037 0.00 0.00 0.00 4.01
215 216 6.594159 TGAAGTTACTAGCTTATGTTCTTGCC 59.406 38.462 0.00 0.00 0.00 4.52
216 217 5.429130 AGTTACTAGCTTATGTTCTTGCCC 58.571 41.667 0.00 0.00 0.00 5.36
217 218 5.045869 AGTTACTAGCTTATGTTCTTGCCCA 60.046 40.000 0.00 0.00 0.00 5.36
218 219 4.510167 ACTAGCTTATGTTCTTGCCCAT 57.490 40.909 0.00 0.00 0.00 4.00
219 220 4.860022 ACTAGCTTATGTTCTTGCCCATT 58.140 39.130 0.00 0.00 0.00 3.16
220 221 4.641989 ACTAGCTTATGTTCTTGCCCATTG 59.358 41.667 0.00 0.00 0.00 2.82
221 222 3.434309 AGCTTATGTTCTTGCCCATTGT 58.566 40.909 0.00 0.00 0.00 2.71
222 223 3.194116 AGCTTATGTTCTTGCCCATTGTG 59.806 43.478 0.00 0.00 0.00 3.33
223 224 3.193267 GCTTATGTTCTTGCCCATTGTGA 59.807 43.478 0.00 0.00 0.00 3.58
224 225 4.737054 CTTATGTTCTTGCCCATTGTGAC 58.263 43.478 0.00 0.00 0.00 3.67
225 226 1.327303 TGTTCTTGCCCATTGTGACC 58.673 50.000 0.00 0.00 0.00 4.02
226 227 1.327303 GTTCTTGCCCATTGTGACCA 58.673 50.000 0.00 0.00 0.00 4.02
227 228 1.270550 GTTCTTGCCCATTGTGACCAG 59.729 52.381 0.00 0.00 0.00 4.00
228 229 0.895100 TCTTGCCCATTGTGACCAGC 60.895 55.000 0.00 0.00 0.00 4.85
229 230 1.880819 CTTGCCCATTGTGACCAGCC 61.881 60.000 0.00 0.00 0.00 4.85
230 231 2.036256 GCCCATTGTGACCAGCCT 59.964 61.111 0.00 0.00 0.00 4.58
231 232 1.302949 GCCCATTGTGACCAGCCTA 59.697 57.895 0.00 0.00 0.00 3.93
232 233 0.323360 GCCCATTGTGACCAGCCTAA 60.323 55.000 0.00 0.00 0.00 2.69
233 234 1.463674 CCCATTGTGACCAGCCTAAC 58.536 55.000 0.00 0.00 0.00 2.34
234 235 1.271871 CCCATTGTGACCAGCCTAACA 60.272 52.381 0.00 0.00 0.00 2.41
235 236 2.513753 CCATTGTGACCAGCCTAACAA 58.486 47.619 0.00 0.00 36.98 2.83
236 237 2.228822 CCATTGTGACCAGCCTAACAAC 59.771 50.000 0.00 0.00 35.51 3.32
237 238 1.975660 TTGTGACCAGCCTAACAACC 58.024 50.000 0.00 0.00 0.00 3.77
238 239 0.250124 TGTGACCAGCCTAACAACCG 60.250 55.000 0.00 0.00 0.00 4.44
239 240 0.034337 GTGACCAGCCTAACAACCGA 59.966 55.000 0.00 0.00 0.00 4.69
240 241 0.759959 TGACCAGCCTAACAACCGAA 59.240 50.000 0.00 0.00 0.00 4.30
241 242 1.349688 TGACCAGCCTAACAACCGAAT 59.650 47.619 0.00 0.00 0.00 3.34
242 243 1.737793 GACCAGCCTAACAACCGAATG 59.262 52.381 0.00 0.00 0.00 2.67
243 244 1.094785 CCAGCCTAACAACCGAATGG 58.905 55.000 0.00 0.00 42.84 3.16
244 245 1.094785 CAGCCTAACAACCGAATGGG 58.905 55.000 0.00 0.00 40.75 4.00
245 246 0.679960 AGCCTAACAACCGAATGGGC 60.680 55.000 0.00 0.00 40.62 5.36
246 247 1.663379 GCCTAACAACCGAATGGGCC 61.663 60.000 0.00 0.00 40.62 5.80
281 282 4.772046 TCGTTTTTGAAAGAGTGAGTCG 57.228 40.909 0.00 0.00 0.00 4.18
283 284 4.503007 TCGTTTTTGAAAGAGTGAGTCGAG 59.497 41.667 0.00 0.00 0.00 4.04
344 350 4.991760 GCATCTCGCAAGCATGTC 57.008 55.556 0.00 0.00 41.79 3.06
347 353 1.366679 CATCTCGCAAGCATGTCTGT 58.633 50.000 0.00 0.00 37.18 3.41
350 356 0.165295 CTCGCAAGCATGTCTGTGTG 59.835 55.000 8.84 4.32 37.18 3.82
351 357 1.208358 CGCAAGCATGTCTGTGTGG 59.792 57.895 0.00 0.00 0.00 4.17
352 358 1.509644 CGCAAGCATGTCTGTGTGGT 61.510 55.000 0.00 0.00 0.00 4.16
353 359 0.039798 GCAAGCATGTCTGTGTGGTG 60.040 55.000 0.00 0.00 0.00 4.17
355 361 2.493035 CAAGCATGTCTGTGTGGTGTA 58.507 47.619 0.00 0.00 0.00 2.90
356 362 2.169832 AGCATGTCTGTGTGGTGTAC 57.830 50.000 0.00 0.00 0.00 2.90
357 363 1.694150 AGCATGTCTGTGTGGTGTACT 59.306 47.619 0.00 0.00 0.00 2.73
358 364 2.104792 AGCATGTCTGTGTGGTGTACTT 59.895 45.455 0.00 0.00 0.00 2.24
359 365 2.480419 GCATGTCTGTGTGGTGTACTTC 59.520 50.000 0.00 0.00 0.00 3.01
360 366 2.902705 TGTCTGTGTGGTGTACTTCC 57.097 50.000 0.00 0.00 0.00 3.46
361 367 2.394632 TGTCTGTGTGGTGTACTTCCT 58.605 47.619 8.61 0.00 0.00 3.36
362 368 2.769663 TGTCTGTGTGGTGTACTTCCTT 59.230 45.455 8.61 0.00 0.00 3.36
384 390 1.447838 CTTGACCCGATCACCACCG 60.448 63.158 0.00 0.00 36.92 4.94
525 546 1.647346 ACAGAAAACGTCGCTGTGAA 58.353 45.000 14.59 0.00 41.02 3.18
551 572 2.363795 TCACCGCCGATCCCTTCT 60.364 61.111 0.00 0.00 0.00 2.85
716 753 1.800586 GCGTGTGAGTTGTGATGTGAT 59.199 47.619 0.00 0.00 0.00 3.06
810 849 3.289525 GACCGCTAGTCCTGTGCT 58.710 61.111 0.00 0.00 39.84 4.40
882 932 4.130118 CGGAAATAGTTCTCCATCCCAAG 58.870 47.826 2.56 0.00 33.92 3.61
899 949 2.571202 CCAAGCTTCTCTTCTCCCTTCT 59.429 50.000 0.00 0.00 31.27 2.85
900 950 3.369366 CCAAGCTTCTCTTCTCCCTTCTC 60.369 52.174 0.00 0.00 31.27 2.87
901 951 3.473113 AGCTTCTCTTCTCCCTTCTCT 57.527 47.619 0.00 0.00 0.00 3.10
905 955 4.142160 GCTTCTCTTCTCCCTTCTCTTCTC 60.142 50.000 0.00 0.00 0.00 2.87
911 961 2.092646 TCTCCCTTCTCTTCTCCTCTCG 60.093 54.545 0.00 0.00 0.00 4.04
946 996 2.342279 CGGAAGGAACAGCGTCCA 59.658 61.111 6.86 0.00 40.48 4.02
947 997 1.079127 CGGAAGGAACAGCGTCCAT 60.079 57.895 6.86 0.00 40.48 3.41
948 998 0.673644 CGGAAGGAACAGCGTCCATT 60.674 55.000 6.86 0.00 40.48 3.16
949 999 1.087501 GGAAGGAACAGCGTCCATTC 58.912 55.000 6.86 7.12 40.48 2.67
950 1000 1.087501 GAAGGAACAGCGTCCATTCC 58.912 55.000 6.86 3.74 41.97 3.01
951 1001 0.400213 AAGGAACAGCGTCCATTCCA 59.600 50.000 5.13 0.00 43.75 3.53
952 1002 0.620556 AGGAACAGCGTCCATTCCAT 59.379 50.000 5.13 0.00 43.75 3.41
953 1003 1.004745 AGGAACAGCGTCCATTCCATT 59.995 47.619 5.13 0.00 43.75 3.16
954 1004 2.238646 AGGAACAGCGTCCATTCCATTA 59.761 45.455 5.13 0.00 43.75 1.90
955 1005 2.354821 GGAACAGCGTCCATTCCATTAC 59.645 50.000 0.00 0.00 41.40 1.89
956 1006 2.779755 ACAGCGTCCATTCCATTACA 57.220 45.000 0.00 0.00 0.00 2.41
957 1007 2.632377 ACAGCGTCCATTCCATTACAG 58.368 47.619 0.00 0.00 0.00 2.74
958 1008 2.027192 ACAGCGTCCATTCCATTACAGT 60.027 45.455 0.00 0.00 0.00 3.55
961 1011 3.704566 AGCGTCCATTCCATTACAGTAGA 59.295 43.478 0.00 0.00 0.00 2.59
985 1035 3.744238 TGGTGTTTGAGAGACGATCAA 57.256 42.857 0.00 0.00 34.93 2.57
989 1039 3.304559 GTGTTTGAGAGACGATCAATCCG 59.695 47.826 0.00 0.00 36.60 4.18
1228 1280 4.755411 CCATGATTTTGATTCTGCTTGCT 58.245 39.130 0.00 0.00 0.00 3.91
1234 1288 1.999648 TGATTCTGCTTGCTTGGGTT 58.000 45.000 0.00 0.00 0.00 4.11
1237 1291 4.088634 TGATTCTGCTTGCTTGGGTTTAT 58.911 39.130 0.00 0.00 0.00 1.40
1238 1292 4.158394 TGATTCTGCTTGCTTGGGTTTATC 59.842 41.667 0.00 0.00 0.00 1.75
1241 1295 1.545582 TGCTTGCTTGGGTTTATCTGC 59.454 47.619 0.00 0.00 0.00 4.26
1247 1301 2.359900 CTTGGGTTTATCTGCGAGCTT 58.640 47.619 0.00 0.00 0.00 3.74
1248 1302 1.737838 TGGGTTTATCTGCGAGCTTG 58.262 50.000 0.00 0.00 0.00 4.01
1261 1315 3.066621 TGCGAGCTTGAACTGAATGTTTT 59.933 39.130 4.70 0.00 39.30 2.43
1266 1320 5.036737 AGCTTGAACTGAATGTTTTTGTCG 58.963 37.500 0.00 0.00 39.30 4.35
1269 1325 6.438259 TTGAACTGAATGTTTTTGTCGGTA 57.562 33.333 0.00 0.00 39.30 4.02
1365 1421 1.255667 GGTGGCCTCCAAGTACGAGA 61.256 60.000 19.19 0.00 34.18 4.04
1503 1565 2.575993 GCAAGAGCGAGGAGAGCA 59.424 61.111 0.00 0.00 37.01 4.26
1504 1566 1.079543 GCAAGAGCGAGGAGAGCAA 60.080 57.895 0.00 0.00 37.01 3.91
1641 1703 1.070786 GAGGAGTGCAAACCCGTCA 59.929 57.895 6.78 0.00 0.00 4.35
1867 1929 3.357079 GGGCGAGCACAACCACAG 61.357 66.667 0.00 0.00 0.00 3.66
1937 1999 3.948719 AAGAACGCCGGGAAGCCA 61.949 61.111 2.18 0.00 0.00 4.75
1979 2044 3.506096 CACCCGCAGCAGCATCAG 61.506 66.667 0.82 0.00 42.27 2.90
1982 2047 3.877357 CCGCAGCAGCATCAGCAG 61.877 66.667 0.82 0.00 45.49 4.24
2168 2233 0.178984 TATCGCCGACCAGGGACATA 60.179 55.000 0.00 0.00 41.48 2.29
2184 2249 4.526650 GGGACATAAATTAATCCCCGCATT 59.473 41.667 12.41 0.00 44.53 3.56
2256 2327 2.363406 ATTGCTGCCTTCCTGCCC 60.363 61.111 0.00 0.00 37.58 5.36
2274 2345 3.423154 CTGCCGCCTCCGTCAAAC 61.423 66.667 0.00 0.00 0.00 2.93
2277 2348 3.047877 CCGCCTCCGTCAAACCAC 61.048 66.667 0.00 0.00 0.00 4.16
2278 2349 3.411351 CGCCTCCGTCAAACCACG 61.411 66.667 0.00 0.00 39.61 4.94
2302 2374 0.179040 AAAACCAGCGAGAACCGGAA 60.179 50.000 9.46 0.00 39.04 4.30
2415 2491 3.528370 CGGCGAGGGAGGGTGTAG 61.528 72.222 0.00 0.00 0.00 2.74
2551 2927 6.640137 TCGATTCGATTCAATGAGAAAATCG 58.360 36.000 17.73 17.73 46.12 3.34
2596 2972 6.693761 TCAATCGCTCAAATTTTGTCAATG 57.306 33.333 8.89 3.49 0.00 2.82
2601 2979 4.445052 CGCTCAAATTTTGTCAATGCTCAA 59.555 37.500 8.89 0.00 0.00 3.02
2629 3007 3.396751 CTGCTGCAGCGAGACATC 58.603 61.111 32.11 5.47 45.83 3.06
2630 3008 2.125391 TGCTGCAGCGAGACATCC 60.125 61.111 32.11 4.71 45.83 3.51
2631 3009 2.186384 GCTGCAGCGAGACATCCT 59.814 61.111 25.23 0.00 0.00 3.24
2632 3010 1.882167 GCTGCAGCGAGACATCCTC 60.882 63.158 25.23 0.00 38.55 3.71
2633 3011 1.815196 CTGCAGCGAGACATCCTCT 59.185 57.895 0.00 0.00 39.78 3.69
2634 3012 0.528033 CTGCAGCGAGACATCCTCTG 60.528 60.000 0.00 0.00 39.78 3.35
2635 3013 0.967380 TGCAGCGAGACATCCTCTGA 60.967 55.000 0.00 0.00 39.78 3.27
2636 3014 0.174389 GCAGCGAGACATCCTCTGAA 59.826 55.000 0.00 0.00 39.78 3.02
2637 3015 1.919918 CAGCGAGACATCCTCTGAAC 58.080 55.000 0.00 0.00 39.78 3.18
2638 3016 0.820871 AGCGAGACATCCTCTGAACC 59.179 55.000 0.00 0.00 39.78 3.62
2639 3017 0.532573 GCGAGACATCCTCTGAACCA 59.467 55.000 0.00 0.00 39.78 3.67
2640 3018 1.066858 GCGAGACATCCTCTGAACCAA 60.067 52.381 0.00 0.00 39.78 3.67
2641 3019 2.612972 GCGAGACATCCTCTGAACCAAA 60.613 50.000 0.00 0.00 39.78 3.28
2642 3020 2.996621 CGAGACATCCTCTGAACCAAAC 59.003 50.000 0.00 0.00 39.78 2.93
2643 3021 3.306364 CGAGACATCCTCTGAACCAAACT 60.306 47.826 0.00 0.00 39.78 2.66
2644 3022 4.082190 CGAGACATCCTCTGAACCAAACTA 60.082 45.833 0.00 0.00 39.78 2.24
2645 3023 5.153950 AGACATCCTCTGAACCAAACTAC 57.846 43.478 0.00 0.00 0.00 2.73
2646 3024 4.841246 AGACATCCTCTGAACCAAACTACT 59.159 41.667 0.00 0.00 0.00 2.57
2647 3025 6.017192 AGACATCCTCTGAACCAAACTACTA 58.983 40.000 0.00 0.00 0.00 1.82
2648 3026 6.038997 ACATCCTCTGAACCAAACTACTAC 57.961 41.667 0.00 0.00 0.00 2.73
2649 3027 4.778534 TCCTCTGAACCAAACTACTACG 57.221 45.455 0.00 0.00 0.00 3.51
2650 3028 3.508793 TCCTCTGAACCAAACTACTACGG 59.491 47.826 0.00 0.00 0.00 4.02
2651 3029 3.368116 CCTCTGAACCAAACTACTACGGG 60.368 52.174 0.00 0.00 0.00 5.28
2652 3030 2.564062 TCTGAACCAAACTACTACGGGG 59.436 50.000 0.00 0.00 0.00 5.73
2653 3031 2.301009 CTGAACCAAACTACTACGGGGT 59.699 50.000 0.00 0.00 0.00 4.95
2654 3032 3.505386 TGAACCAAACTACTACGGGGTA 58.495 45.455 0.00 0.00 0.00 3.69
2655 3033 4.095946 TGAACCAAACTACTACGGGGTAT 58.904 43.478 0.00 0.00 0.00 2.73
2656 3034 5.268387 TGAACCAAACTACTACGGGGTATA 58.732 41.667 0.00 0.00 0.00 1.47
2657 3035 5.360714 TGAACCAAACTACTACGGGGTATAG 59.639 44.000 0.00 0.00 0.00 1.31
2658 3036 4.871822 ACCAAACTACTACGGGGTATAGT 58.128 43.478 0.00 0.00 36.79 2.12
2659 3037 6.013554 ACCAAACTACTACGGGGTATAGTA 57.986 41.667 0.00 0.00 34.66 1.82
2660 3038 5.828328 ACCAAACTACTACGGGGTATAGTAC 59.172 44.000 0.00 0.00 34.66 2.73
2661 3039 5.827797 CCAAACTACTACGGGGTATAGTACA 59.172 44.000 0.00 0.00 34.66 2.90
2662 3040 6.016777 CCAAACTACTACGGGGTATAGTACAG 60.017 46.154 0.00 0.00 34.66 2.74
2718 3096 4.452455 GCGAAGAGAGGAAAATGAGTTTGA 59.548 41.667 0.00 0.00 0.00 2.69
2722 3100 5.799213 AGAGAGGAAAATGAGTTTGACGAT 58.201 37.500 0.00 0.00 0.00 3.73
2730 3108 6.589830 AAATGAGTTTGACGATCTTATCCG 57.410 37.500 0.00 0.00 0.00 4.18
2821 3199 0.463295 AGAGGTCGGAGAATACGCGA 60.463 55.000 15.93 0.00 39.69 5.87
3069 3452 0.251386 ACGCACCTCTCCTCTCTGAA 60.251 55.000 0.00 0.00 0.00 3.02
3082 3481 9.533253 CTCTCCTCTCTGAATCTCTTTTATTTC 57.467 37.037 0.00 0.00 0.00 2.17
3089 3488 8.709386 TCTGAATCTCTTTTATTTCTCTTCGG 57.291 34.615 0.00 0.00 0.00 4.30
3099 3498 3.602390 TTTCTCTTCGGCTTTGAAACG 57.398 42.857 0.00 0.00 0.00 3.60
3106 3505 0.307760 CGGCTTTGAAACGCACTTCT 59.692 50.000 2.75 0.00 0.00 2.85
3107 3506 1.529438 CGGCTTTGAAACGCACTTCTA 59.471 47.619 2.75 0.00 0.00 2.10
3110 3509 3.914364 GGCTTTGAAACGCACTTCTATTG 59.086 43.478 2.75 0.00 0.00 1.90
3111 3510 4.537015 GCTTTGAAACGCACTTCTATTGT 58.463 39.130 0.00 0.00 0.00 2.71
3112 3511 4.976116 GCTTTGAAACGCACTTCTATTGTT 59.024 37.500 0.00 0.00 0.00 2.83
3113 3512 5.458779 GCTTTGAAACGCACTTCTATTGTTT 59.541 36.000 0.00 0.00 35.61 2.83
3124 3527 8.567221 CGCACTTCTATTGTTTTAAAATCTTCG 58.433 33.333 3.52 0.00 0.00 3.79
3128 3531 9.774742 CTTCTATTGTTTTAAAATCTTCGAGGG 57.225 33.333 3.52 0.00 0.00 4.30
3132 3535 8.631480 ATTGTTTTAAAATCTTCGAGGGTACT 57.369 30.769 3.52 0.00 0.00 2.73
3135 3538 2.693267 AAATCTTCGAGGGTACTGGC 57.307 50.000 0.00 0.00 0.00 4.85
3149 3552 4.166888 TGGCCTCCAGATCTGCGC 62.167 66.667 17.76 16.44 0.00 6.09
3163 3566 0.297820 CTGCGCGAGATACCGTTTTC 59.702 55.000 12.10 0.00 0.00 2.29
3164 3567 0.108992 TGCGCGAGATACCGTTTTCT 60.109 50.000 12.10 0.00 0.00 2.52
3165 3568 0.997196 GCGCGAGATACCGTTTTCTT 59.003 50.000 12.10 0.00 0.00 2.52
3166 3569 1.392510 GCGCGAGATACCGTTTTCTTT 59.607 47.619 12.10 0.00 0.00 2.52
3167 3570 2.159747 GCGCGAGATACCGTTTTCTTTT 60.160 45.455 12.10 0.00 0.00 2.27
3168 3571 3.061161 GCGCGAGATACCGTTTTCTTTTA 59.939 43.478 12.10 0.00 0.00 1.52
3169 3572 4.434593 GCGCGAGATACCGTTTTCTTTTAA 60.435 41.667 12.10 0.00 0.00 1.52
3170 3573 5.610975 CGCGAGATACCGTTTTCTTTTAAA 58.389 37.500 0.00 0.00 0.00 1.52
3171 3574 6.245724 CGCGAGATACCGTTTTCTTTTAAAT 58.754 36.000 0.00 0.00 0.00 1.40
3172 3575 6.407181 CGCGAGATACCGTTTTCTTTTAAATC 59.593 38.462 0.00 0.00 0.00 2.17
3173 3576 6.685828 GCGAGATACCGTTTTCTTTTAAATCC 59.314 38.462 0.00 0.00 0.00 3.01
3174 3577 7.184779 CGAGATACCGTTTTCTTTTAAATCCC 58.815 38.462 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.141363 GCCACATAAGCAAAGTTATATTGGAG 58.859 38.462 0.00 0.00 31.72 3.86
1 2 6.605194 TGCCACATAAGCAAAGTTATATTGGA 59.395 34.615 0.00 0.00 37.28 3.53
2 3 6.804677 TGCCACATAAGCAAAGTTATATTGG 58.195 36.000 0.00 0.00 37.28 3.16
3 4 7.095940 GCATGCCACATAAGCAAAGTTATATTG 60.096 37.037 6.36 0.00 44.83 1.90
4 5 6.925165 GCATGCCACATAAGCAAAGTTATATT 59.075 34.615 6.36 0.00 44.83 1.28
5 6 6.040729 TGCATGCCACATAAGCAAAGTTATAT 59.959 34.615 16.68 0.00 44.83 0.86
6 7 5.359292 TGCATGCCACATAAGCAAAGTTATA 59.641 36.000 16.68 0.00 44.83 0.98
7 8 4.160065 TGCATGCCACATAAGCAAAGTTAT 59.840 37.500 16.68 0.00 44.83 1.89
8 9 3.509184 TGCATGCCACATAAGCAAAGTTA 59.491 39.130 16.68 0.00 44.83 2.24
9 10 2.299582 TGCATGCCACATAAGCAAAGTT 59.700 40.909 16.68 0.00 44.83 2.66
10 11 1.894466 TGCATGCCACATAAGCAAAGT 59.106 42.857 16.68 0.00 44.83 2.66
11 12 2.658373 TGCATGCCACATAAGCAAAG 57.342 45.000 16.68 0.00 44.83 2.77
12 13 3.613494 AATGCATGCCACATAAGCAAA 57.387 38.095 16.68 0.00 44.83 3.68
13 14 3.613494 AAATGCATGCCACATAAGCAA 57.387 38.095 16.68 0.00 44.83 3.91
14 15 4.732672 TTAAATGCATGCCACATAAGCA 57.267 36.364 16.68 0.00 45.94 3.91
15 16 5.291178 TCATTAAATGCATGCCACATAAGC 58.709 37.500 16.68 0.00 0.00 3.09
16 17 7.204604 TCTTCATTAAATGCATGCCACATAAG 58.795 34.615 16.68 8.68 0.00 1.73
17 18 7.068470 TCTCTTCATTAAATGCATGCCACATAA 59.932 33.333 16.68 9.71 0.00 1.90
18 19 6.546772 TCTCTTCATTAAATGCATGCCACATA 59.453 34.615 16.68 0.00 0.00 2.29
19 20 5.361571 TCTCTTCATTAAATGCATGCCACAT 59.638 36.000 16.68 0.00 0.00 3.21
20 21 4.705991 TCTCTTCATTAAATGCATGCCACA 59.294 37.500 16.68 0.00 0.00 4.17
21 22 5.066893 TCTCTCTTCATTAAATGCATGCCAC 59.933 40.000 16.68 0.00 0.00 5.01
22 23 5.195185 TCTCTCTTCATTAAATGCATGCCA 58.805 37.500 16.68 3.52 0.00 4.92
23 24 5.278364 CCTCTCTCTTCATTAAATGCATGCC 60.278 44.000 16.68 0.00 0.00 4.40
24 25 5.298777 ACCTCTCTCTTCATTAAATGCATGC 59.701 40.000 11.82 11.82 0.00 4.06
25 26 6.318144 ACACCTCTCTCTTCATTAAATGCATG 59.682 38.462 0.00 0.00 0.00 4.06
26 27 6.421485 ACACCTCTCTCTTCATTAAATGCAT 58.579 36.000 0.00 0.00 0.00 3.96
27 28 5.809001 ACACCTCTCTCTTCATTAAATGCA 58.191 37.500 0.00 0.00 0.00 3.96
28 29 6.749923 AACACCTCTCTCTTCATTAAATGC 57.250 37.500 0.00 0.00 0.00 3.56
29 30 8.019669 CACAAACACCTCTCTCTTCATTAAATG 58.980 37.037 0.00 0.00 0.00 2.32
30 31 7.175641 CCACAAACACCTCTCTCTTCATTAAAT 59.824 37.037 0.00 0.00 0.00 1.40
31 32 6.486657 CCACAAACACCTCTCTCTTCATTAAA 59.513 38.462 0.00 0.00 0.00 1.52
32 33 5.997746 CCACAAACACCTCTCTCTTCATTAA 59.002 40.000 0.00 0.00 0.00 1.40
33 34 5.071788 ACCACAAACACCTCTCTCTTCATTA 59.928 40.000 0.00 0.00 0.00 1.90
34 35 4.141390 ACCACAAACACCTCTCTCTTCATT 60.141 41.667 0.00 0.00 0.00 2.57
35 36 3.392616 ACCACAAACACCTCTCTCTTCAT 59.607 43.478 0.00 0.00 0.00 2.57
36 37 2.771943 ACCACAAACACCTCTCTCTTCA 59.228 45.455 0.00 0.00 0.00 3.02
37 38 3.477210 ACCACAAACACCTCTCTCTTC 57.523 47.619 0.00 0.00 0.00 2.87
38 39 4.409247 AGTTACCACAAACACCTCTCTCTT 59.591 41.667 0.00 0.00 0.00 2.85
39 40 3.967987 AGTTACCACAAACACCTCTCTCT 59.032 43.478 0.00 0.00 0.00 3.10
40 41 4.338379 AGTTACCACAAACACCTCTCTC 57.662 45.455 0.00 0.00 0.00 3.20
41 42 4.262506 GCTAGTTACCACAAACACCTCTCT 60.263 45.833 0.00 0.00 0.00 3.10
42 43 3.995048 GCTAGTTACCACAAACACCTCTC 59.005 47.826 0.00 0.00 0.00 3.20
43 44 3.646637 AGCTAGTTACCACAAACACCTCT 59.353 43.478 0.00 0.00 0.00 3.69
44 45 4.004196 AGCTAGTTACCACAAACACCTC 57.996 45.455 0.00 0.00 0.00 3.85
45 46 5.071384 ACTTAGCTAGTTACCACAAACACCT 59.929 40.000 0.00 0.00 31.29 4.00
46 47 5.303165 ACTTAGCTAGTTACCACAAACACC 58.697 41.667 0.00 0.00 31.29 4.16
47 48 6.856135 AACTTAGCTAGTTACCACAAACAC 57.144 37.500 6.75 0.00 45.22 3.32
57 58 6.377996 TGATGTTCCGGTAACTTAGCTAGTTA 59.622 38.462 0.00 10.09 45.22 2.24
59 60 4.708421 TGATGTTCCGGTAACTTAGCTAGT 59.292 41.667 0.00 0.00 38.99 2.57
60 61 5.258456 TGATGTTCCGGTAACTTAGCTAG 57.742 43.478 0.00 0.00 38.99 3.42
61 62 5.864418 ATGATGTTCCGGTAACTTAGCTA 57.136 39.130 0.00 0.00 38.99 3.32
62 63 4.755266 ATGATGTTCCGGTAACTTAGCT 57.245 40.909 0.00 0.00 38.99 3.32
63 64 5.233689 GTGTATGATGTTCCGGTAACTTAGC 59.766 44.000 0.00 0.00 38.99 3.09
64 65 6.570692 AGTGTATGATGTTCCGGTAACTTAG 58.429 40.000 0.00 0.00 38.99 2.18
65 66 6.406177 GGAGTGTATGATGTTCCGGTAACTTA 60.406 42.308 0.00 0.00 38.99 2.24
66 67 5.416271 AGTGTATGATGTTCCGGTAACTT 57.584 39.130 0.00 3.15 38.99 2.66
67 68 4.142004 GGAGTGTATGATGTTCCGGTAACT 60.142 45.833 0.00 0.00 38.99 2.24
68 69 4.117685 GGAGTGTATGATGTTCCGGTAAC 58.882 47.826 0.00 5.56 38.67 2.50
69 70 3.770388 TGGAGTGTATGATGTTCCGGTAA 59.230 43.478 0.00 0.00 0.00 2.85
70 71 3.367321 TGGAGTGTATGATGTTCCGGTA 58.633 45.455 0.00 0.00 0.00 4.02
71 72 2.184533 TGGAGTGTATGATGTTCCGGT 58.815 47.619 0.00 0.00 0.00 5.28
72 73 2.979814 TGGAGTGTATGATGTTCCGG 57.020 50.000 0.00 0.00 0.00 5.14
73 74 4.123497 TCTTGGAGTGTATGATGTTCCG 57.877 45.455 0.00 0.00 0.00 4.30
74 75 5.705441 TGTTTCTTGGAGTGTATGATGTTCC 59.295 40.000 0.00 0.00 0.00 3.62
75 76 6.801539 TGTTTCTTGGAGTGTATGATGTTC 57.198 37.500 0.00 0.00 0.00 3.18
76 77 7.448161 TCATTGTTTCTTGGAGTGTATGATGTT 59.552 33.333 0.00 0.00 0.00 2.71
77 78 6.942005 TCATTGTTTCTTGGAGTGTATGATGT 59.058 34.615 0.00 0.00 0.00 3.06
78 79 7.120285 ACTCATTGTTTCTTGGAGTGTATGATG 59.880 37.037 0.00 0.00 37.43 3.07
79 80 7.170965 ACTCATTGTTTCTTGGAGTGTATGAT 58.829 34.615 0.00 0.00 37.43 2.45
80 81 6.533730 ACTCATTGTTTCTTGGAGTGTATGA 58.466 36.000 0.00 0.00 37.43 2.15
81 82 6.652481 AGACTCATTGTTTCTTGGAGTGTATG 59.348 38.462 0.00 0.00 38.82 2.39
82 83 6.773638 AGACTCATTGTTTCTTGGAGTGTAT 58.226 36.000 0.00 0.00 38.82 2.29
83 84 6.174720 AGACTCATTGTTTCTTGGAGTGTA 57.825 37.500 0.00 0.00 38.82 2.90
84 85 5.041191 AGACTCATTGTTTCTTGGAGTGT 57.959 39.130 0.00 0.00 38.82 3.55
85 86 8.660373 GTTATAGACTCATTGTTTCTTGGAGTG 58.340 37.037 0.00 0.00 38.82 3.51
86 87 7.824779 GGTTATAGACTCATTGTTTCTTGGAGT 59.175 37.037 0.00 0.00 41.22 3.85
87 88 8.043710 AGGTTATAGACTCATTGTTTCTTGGAG 58.956 37.037 0.00 0.00 0.00 3.86
88 89 7.918076 AGGTTATAGACTCATTGTTTCTTGGA 58.082 34.615 0.00 0.00 0.00 3.53
89 90 9.667107 TTAGGTTATAGACTCATTGTTTCTTGG 57.333 33.333 0.00 0.00 0.00 3.61
124 125 6.585416 ACATCTATGTAGTGTCATGCAATGA 58.415 36.000 0.00 0.00 45.34 2.57
125 126 6.856135 ACATCTATGTAGTGTCATGCAATG 57.144 37.500 0.00 0.00 42.25 2.82
126 127 6.484643 GGAACATCTATGTAGTGTCATGCAAT 59.515 38.462 0.00 0.00 40.80 3.56
127 128 5.817296 GGAACATCTATGTAGTGTCATGCAA 59.183 40.000 0.00 0.00 40.80 4.08
128 129 5.129320 AGGAACATCTATGTAGTGTCATGCA 59.871 40.000 0.00 0.00 40.80 3.96
129 130 5.605534 AGGAACATCTATGTAGTGTCATGC 58.394 41.667 0.00 0.00 40.80 4.06
130 131 7.148641 GGTAGGAACATCTATGTAGTGTCATG 58.851 42.308 0.00 0.00 40.80 3.07
131 132 6.267928 GGGTAGGAACATCTATGTAGTGTCAT 59.732 42.308 0.00 0.00 40.80 3.06
132 133 5.597182 GGGTAGGAACATCTATGTAGTGTCA 59.403 44.000 0.00 0.00 40.80 3.58
133 134 5.597182 TGGGTAGGAACATCTATGTAGTGTC 59.403 44.000 0.00 0.00 40.80 3.67
134 135 5.363005 GTGGGTAGGAACATCTATGTAGTGT 59.637 44.000 0.00 0.00 40.80 3.55
135 136 5.598830 AGTGGGTAGGAACATCTATGTAGTG 59.401 44.000 0.00 0.00 40.80 2.74
136 137 5.778542 AGTGGGTAGGAACATCTATGTAGT 58.221 41.667 0.00 0.00 40.80 2.73
137 138 7.093727 CCATAGTGGGTAGGAACATCTATGTAG 60.094 44.444 0.00 0.00 35.14 2.74
138 139 6.724441 CCATAGTGGGTAGGAACATCTATGTA 59.276 42.308 0.00 0.00 35.14 2.29
139 140 5.544176 CCATAGTGGGTAGGAACATCTATGT 59.456 44.000 0.00 0.00 36.83 2.29
140 141 5.780282 TCCATAGTGGGTAGGAACATCTATG 59.220 44.000 0.00 0.00 38.32 2.23
141 142 5.977533 TCCATAGTGGGTAGGAACATCTAT 58.022 41.667 0.00 0.00 38.32 1.98
142 143 5.394738 CTCCATAGTGGGTAGGAACATCTA 58.605 45.833 0.00 0.00 38.32 1.98
143 144 4.227197 CTCCATAGTGGGTAGGAACATCT 58.773 47.826 0.00 0.00 38.32 2.90
144 145 3.325135 CCTCCATAGTGGGTAGGAACATC 59.675 52.174 0.00 0.00 38.32 3.06
145 146 3.311402 ACCTCCATAGTGGGTAGGAACAT 60.311 47.826 9.90 0.00 38.32 2.71
146 147 2.045326 ACCTCCATAGTGGGTAGGAACA 59.955 50.000 9.90 0.00 38.32 3.18
147 148 2.760581 ACCTCCATAGTGGGTAGGAAC 58.239 52.381 9.90 0.00 38.32 3.62
148 149 4.194678 CTACCTCCATAGTGGGTAGGAA 57.805 50.000 9.90 0.00 45.09 3.36
149 150 3.897657 CTACCTCCATAGTGGGTAGGA 57.102 52.381 9.90 0.00 45.09 2.94
152 153 5.470755 TGTTACTACCTCCATAGTGGGTA 57.529 43.478 0.00 0.00 38.32 3.69
153 154 4.341863 TGTTACTACCTCCATAGTGGGT 57.658 45.455 0.00 0.00 38.32 4.51
154 155 6.075984 ACTATGTTACTACCTCCATAGTGGG 58.924 44.000 9.63 0.00 44.96 4.61
155 156 7.005296 AGACTATGTTACTACCTCCATAGTGG 58.995 42.308 14.01 0.00 46.02 4.00
156 157 9.221933 CTAGACTATGTTACTACCTCCATAGTG 57.778 40.741 14.01 0.00 46.02 2.74
158 159 7.830201 CCCTAGACTATGTTACTACCTCCATAG 59.170 44.444 0.00 0.00 41.50 2.23
159 160 7.518653 TCCCTAGACTATGTTACTACCTCCATA 59.481 40.741 0.00 0.00 0.00 2.74
160 161 6.334774 TCCCTAGACTATGTTACTACCTCCAT 59.665 42.308 0.00 0.00 0.00 3.41
161 162 5.673574 TCCCTAGACTATGTTACTACCTCCA 59.326 44.000 0.00 0.00 0.00 3.86
162 163 6.198237 TCCCTAGACTATGTTACTACCTCC 57.802 45.833 0.00 0.00 0.00 4.30
163 164 7.229106 CACTTCCCTAGACTATGTTACTACCTC 59.771 44.444 0.00 0.00 0.00 3.85
164 165 7.061688 CACTTCCCTAGACTATGTTACTACCT 58.938 42.308 0.00 0.00 0.00 3.08
165 166 6.832900 ACACTTCCCTAGACTATGTTACTACC 59.167 42.308 0.00 0.00 0.00 3.18
166 167 7.555554 TCACACTTCCCTAGACTATGTTACTAC 59.444 40.741 0.00 0.00 0.00 2.73
167 168 7.636579 TCACACTTCCCTAGACTATGTTACTA 58.363 38.462 0.00 0.00 0.00 1.82
168 169 6.491383 TCACACTTCCCTAGACTATGTTACT 58.509 40.000 0.00 0.00 0.00 2.24
169 170 6.770746 TCACACTTCCCTAGACTATGTTAC 57.229 41.667 0.00 0.00 0.00 2.50
170 171 6.952358 ACTTCACACTTCCCTAGACTATGTTA 59.048 38.462 0.00 0.00 0.00 2.41
171 172 5.780793 ACTTCACACTTCCCTAGACTATGTT 59.219 40.000 0.00 0.00 0.00 2.71
172 173 5.334421 ACTTCACACTTCCCTAGACTATGT 58.666 41.667 0.00 0.00 0.00 2.29
173 174 5.923733 ACTTCACACTTCCCTAGACTATG 57.076 43.478 0.00 0.00 0.00 2.23
174 175 7.183460 AGTAACTTCACACTTCCCTAGACTAT 58.817 38.462 0.00 0.00 0.00 2.12
175 176 6.550163 AGTAACTTCACACTTCCCTAGACTA 58.450 40.000 0.00 0.00 0.00 2.59
176 177 5.395611 AGTAACTTCACACTTCCCTAGACT 58.604 41.667 0.00 0.00 0.00 3.24
177 178 5.725325 AGTAACTTCACACTTCCCTAGAC 57.275 43.478 0.00 0.00 0.00 2.59
178 179 5.418209 GCTAGTAACTTCACACTTCCCTAGA 59.582 44.000 0.00 0.00 0.00 2.43
179 180 5.419471 AGCTAGTAACTTCACACTTCCCTAG 59.581 44.000 0.00 0.00 0.00 3.02
180 181 5.331069 AGCTAGTAACTTCACACTTCCCTA 58.669 41.667 0.00 0.00 0.00 3.53
181 182 4.161102 AGCTAGTAACTTCACACTTCCCT 58.839 43.478 0.00 0.00 0.00 4.20
182 183 4.538746 AGCTAGTAACTTCACACTTCCC 57.461 45.455 0.00 0.00 0.00 3.97
183 184 7.097834 ACATAAGCTAGTAACTTCACACTTCC 58.902 38.462 0.00 0.00 0.00 3.46
184 185 8.535690 AACATAAGCTAGTAACTTCACACTTC 57.464 34.615 0.00 0.00 0.00 3.01
185 186 8.368668 AGAACATAAGCTAGTAACTTCACACTT 58.631 33.333 0.00 0.00 0.00 3.16
186 187 7.897864 AGAACATAAGCTAGTAACTTCACACT 58.102 34.615 0.00 0.00 0.00 3.55
187 188 8.436200 CAAGAACATAAGCTAGTAACTTCACAC 58.564 37.037 0.00 0.00 0.00 3.82
188 189 7.117812 GCAAGAACATAAGCTAGTAACTTCACA 59.882 37.037 0.00 0.00 0.00 3.58
189 190 7.413109 GGCAAGAACATAAGCTAGTAACTTCAC 60.413 40.741 0.00 0.00 0.00 3.18
190 191 6.594159 GGCAAGAACATAAGCTAGTAACTTCA 59.406 38.462 0.00 0.00 0.00 3.02
191 192 6.037281 GGGCAAGAACATAAGCTAGTAACTTC 59.963 42.308 0.00 0.00 0.00 3.01
192 193 5.880887 GGGCAAGAACATAAGCTAGTAACTT 59.119 40.000 0.00 0.00 0.00 2.66
193 194 5.045869 TGGGCAAGAACATAAGCTAGTAACT 60.046 40.000 0.00 0.00 0.00 2.24
194 195 5.183228 TGGGCAAGAACATAAGCTAGTAAC 58.817 41.667 0.00 0.00 0.00 2.50
195 196 5.429681 TGGGCAAGAACATAAGCTAGTAA 57.570 39.130 0.00 0.00 0.00 2.24
196 197 5.630415 ATGGGCAAGAACATAAGCTAGTA 57.370 39.130 0.00 0.00 0.00 1.82
197 198 4.510167 ATGGGCAAGAACATAAGCTAGT 57.490 40.909 0.00 0.00 0.00 2.57
198 199 4.641989 ACAATGGGCAAGAACATAAGCTAG 59.358 41.667 0.00 0.00 0.00 3.42
199 200 4.398988 CACAATGGGCAAGAACATAAGCTA 59.601 41.667 0.00 0.00 0.00 3.32
200 201 3.194116 CACAATGGGCAAGAACATAAGCT 59.806 43.478 0.00 0.00 0.00 3.74
201 202 3.193267 TCACAATGGGCAAGAACATAAGC 59.807 43.478 0.00 0.00 0.00 3.09
202 203 4.380867 GGTCACAATGGGCAAGAACATAAG 60.381 45.833 0.00 0.00 0.00 1.73
203 204 3.509575 GGTCACAATGGGCAAGAACATAA 59.490 43.478 0.00 0.00 0.00 1.90
204 205 3.088532 GGTCACAATGGGCAAGAACATA 58.911 45.455 0.00 0.00 0.00 2.29
205 206 1.895131 GGTCACAATGGGCAAGAACAT 59.105 47.619 0.00 0.00 0.00 2.71
206 207 1.327303 GGTCACAATGGGCAAGAACA 58.673 50.000 0.00 0.00 0.00 3.18
207 208 1.270550 CTGGTCACAATGGGCAAGAAC 59.729 52.381 0.00 0.00 0.00 3.01
208 209 1.619654 CTGGTCACAATGGGCAAGAA 58.380 50.000 0.00 0.00 0.00 2.52
209 210 0.895100 GCTGGTCACAATGGGCAAGA 60.895 55.000 0.00 0.00 0.00 3.02
210 211 1.588082 GCTGGTCACAATGGGCAAG 59.412 57.895 0.00 0.00 0.00 4.01
211 212 1.907807 GGCTGGTCACAATGGGCAA 60.908 57.895 0.00 0.00 0.00 4.52
212 213 1.496444 TAGGCTGGTCACAATGGGCA 61.496 55.000 0.00 0.00 0.00 5.36
213 214 0.323360 TTAGGCTGGTCACAATGGGC 60.323 55.000 0.00 0.00 0.00 5.36
214 215 1.271871 TGTTAGGCTGGTCACAATGGG 60.272 52.381 0.00 0.00 0.00 4.00
215 216 2.198827 TGTTAGGCTGGTCACAATGG 57.801 50.000 0.00 0.00 0.00 3.16
216 217 2.228822 GGTTGTTAGGCTGGTCACAATG 59.771 50.000 0.00 0.00 32.00 2.82
217 218 2.514803 GGTTGTTAGGCTGGTCACAAT 58.485 47.619 0.00 0.00 32.00 2.71
218 219 1.812324 CGGTTGTTAGGCTGGTCACAA 60.812 52.381 0.00 0.00 0.00 3.33
219 220 0.250124 CGGTTGTTAGGCTGGTCACA 60.250 55.000 0.00 0.00 0.00 3.58
220 221 0.034337 TCGGTTGTTAGGCTGGTCAC 59.966 55.000 0.00 0.00 0.00 3.67
221 222 0.759959 TTCGGTTGTTAGGCTGGTCA 59.240 50.000 0.00 0.00 0.00 4.02
222 223 1.737793 CATTCGGTTGTTAGGCTGGTC 59.262 52.381 0.00 0.00 0.00 4.02
223 224 1.613255 CCATTCGGTTGTTAGGCTGGT 60.613 52.381 0.00 0.00 0.00 4.00
224 225 1.094785 CCATTCGGTTGTTAGGCTGG 58.905 55.000 0.00 0.00 0.00 4.85
225 226 1.094785 CCCATTCGGTTGTTAGGCTG 58.905 55.000 0.00 0.00 0.00 4.85
226 227 0.679960 GCCCATTCGGTTGTTAGGCT 60.680 55.000 0.00 0.00 36.00 4.58
227 228 1.663379 GGCCCATTCGGTTGTTAGGC 61.663 60.000 0.00 0.00 38.21 3.93
228 229 0.034477 AGGCCCATTCGGTTGTTAGG 60.034 55.000 0.00 0.00 0.00 2.69
229 230 1.834188 AAGGCCCATTCGGTTGTTAG 58.166 50.000 0.00 0.00 0.00 2.34
230 231 2.296073 AAAGGCCCATTCGGTTGTTA 57.704 45.000 0.00 0.00 0.00 2.41
231 232 1.419381 AAAAGGCCCATTCGGTTGTT 58.581 45.000 0.00 0.00 0.00 2.83
232 233 1.419381 AAAAAGGCCCATTCGGTTGT 58.581 45.000 0.00 0.00 0.00 3.32
256 257 8.024865 TCGACTCACTCTTTCAAAAACGATATA 58.975 33.333 0.00 0.00 0.00 0.86
257 258 6.866770 TCGACTCACTCTTTCAAAAACGATAT 59.133 34.615 0.00 0.00 0.00 1.63
258 259 6.210796 TCGACTCACTCTTTCAAAAACGATA 58.789 36.000 0.00 0.00 0.00 2.92
262 263 4.034048 TGCTCGACTCACTCTTTCAAAAAC 59.966 41.667 0.00 0.00 0.00 2.43
264 265 3.792401 TGCTCGACTCACTCTTTCAAAA 58.208 40.909 0.00 0.00 0.00 2.44
299 303 4.697828 GGAGAAAGAGCGAAAAGAAGGATT 59.302 41.667 0.00 0.00 0.00 3.01
301 305 3.557264 GGGAGAAAGAGCGAAAAGAAGGA 60.557 47.826 0.00 0.00 0.00 3.36
302 306 2.744741 GGGAGAAAGAGCGAAAAGAAGG 59.255 50.000 0.00 0.00 0.00 3.46
304 308 2.779506 GGGGAGAAAGAGCGAAAAGAA 58.220 47.619 0.00 0.00 0.00 2.52
306 310 1.079503 CGGGGAGAAAGAGCGAAAAG 58.920 55.000 0.00 0.00 0.00 2.27
311 315 2.815647 GCACGGGGAGAAAGAGCG 60.816 66.667 0.00 0.00 0.00 5.03
312 316 1.078143 ATGCACGGGGAGAAAGAGC 60.078 57.895 0.00 0.00 0.00 4.09
336 342 2.104792 AGTACACCACACAGACATGCTT 59.895 45.455 0.00 0.00 0.00 3.91
344 350 3.564225 GGAAAAGGAAGTACACCACACAG 59.436 47.826 10.84 0.00 0.00 3.66
347 353 4.080243 TCAAGGAAAAGGAAGTACACCACA 60.080 41.667 10.84 0.00 0.00 4.17
350 356 3.819337 GGTCAAGGAAAAGGAAGTACACC 59.181 47.826 0.00 0.00 0.00 4.16
351 357 3.819337 GGGTCAAGGAAAAGGAAGTACAC 59.181 47.826 0.00 0.00 0.00 2.90
352 358 3.495453 CGGGTCAAGGAAAAGGAAGTACA 60.495 47.826 0.00 0.00 0.00 2.90
353 359 3.072211 CGGGTCAAGGAAAAGGAAGTAC 58.928 50.000 0.00 0.00 0.00 2.73
355 361 1.772453 TCGGGTCAAGGAAAAGGAAGT 59.228 47.619 0.00 0.00 0.00 3.01
356 362 2.561478 TCGGGTCAAGGAAAAGGAAG 57.439 50.000 0.00 0.00 0.00 3.46
357 363 2.373836 TGATCGGGTCAAGGAAAAGGAA 59.626 45.455 0.00 0.00 32.78 3.36
358 364 1.982226 TGATCGGGTCAAGGAAAAGGA 59.018 47.619 0.00 0.00 32.78 3.36
359 365 2.084546 GTGATCGGGTCAAGGAAAAGG 58.915 52.381 0.00 0.00 38.90 3.11
360 366 2.084546 GGTGATCGGGTCAAGGAAAAG 58.915 52.381 0.00 0.00 38.90 2.27
361 367 1.422024 TGGTGATCGGGTCAAGGAAAA 59.578 47.619 0.00 0.00 38.90 2.29
362 368 1.060729 TGGTGATCGGGTCAAGGAAA 58.939 50.000 0.00 0.00 38.90 3.13
384 390 4.717313 GGGTTCGGGGAGTGTGGC 62.717 72.222 0.00 0.00 0.00 5.01
716 753 3.282745 GAGGACGAAGCGGCTCACA 62.283 63.158 1.45 0.00 34.07 3.58
766 805 1.064611 AGTCGCTAGCTAGGAAGGTCA 60.065 52.381 22.10 0.00 34.60 4.02
805 844 4.116961 GTCGTGTTATATAGCCAAGCACA 58.883 43.478 0.00 0.00 0.00 4.57
808 847 3.184581 GCAGTCGTGTTATATAGCCAAGC 59.815 47.826 0.00 0.00 0.00 4.01
809 848 4.621991 AGCAGTCGTGTTATATAGCCAAG 58.378 43.478 0.00 0.00 0.00 3.61
810 849 4.500887 GGAGCAGTCGTGTTATATAGCCAA 60.501 45.833 0.00 0.00 0.00 4.52
882 932 3.769300 AGAAGAGAAGGGAGAAGAGAAGC 59.231 47.826 0.00 0.00 0.00 3.86
899 949 4.180946 GCGCGCGAGAGGAGAAGA 62.181 66.667 37.18 0.00 0.00 2.87
935 985 3.006940 TGTAATGGAATGGACGCTGTTC 58.993 45.455 0.00 0.00 0.00 3.18
936 986 3.009723 CTGTAATGGAATGGACGCTGTT 58.990 45.455 0.00 0.00 0.00 3.16
938 988 2.632377 ACTGTAATGGAATGGACGCTG 58.368 47.619 0.00 0.00 0.00 5.18
939 989 3.704566 TCTACTGTAATGGAATGGACGCT 59.295 43.478 0.00 0.00 0.00 5.07
940 990 4.051922 CTCTACTGTAATGGAATGGACGC 58.948 47.826 0.00 0.00 0.00 5.19
942 992 5.283457 AGCTCTACTGTAATGGAATGGAC 57.717 43.478 0.00 0.00 0.00 4.02
943 993 5.396772 CCAAGCTCTACTGTAATGGAATGGA 60.397 44.000 0.00 0.00 0.00 3.41
945 995 5.295292 CACCAAGCTCTACTGTAATGGAATG 59.705 44.000 2.37 0.00 0.00 2.67
946 996 5.045578 ACACCAAGCTCTACTGTAATGGAAT 60.046 40.000 2.37 0.00 0.00 3.01
947 997 4.286032 ACACCAAGCTCTACTGTAATGGAA 59.714 41.667 2.37 0.00 0.00 3.53
948 998 3.838317 ACACCAAGCTCTACTGTAATGGA 59.162 43.478 2.37 0.00 0.00 3.41
949 999 4.207891 ACACCAAGCTCTACTGTAATGG 57.792 45.455 0.00 0.00 0.00 3.16
950 1000 5.700832 TCAAACACCAAGCTCTACTGTAATG 59.299 40.000 0.00 0.00 0.00 1.90
951 1001 5.865085 TCAAACACCAAGCTCTACTGTAAT 58.135 37.500 0.00 0.00 0.00 1.89
952 1002 5.069914 TCTCAAACACCAAGCTCTACTGTAA 59.930 40.000 0.00 0.00 0.00 2.41
953 1003 4.587262 TCTCAAACACCAAGCTCTACTGTA 59.413 41.667 0.00 0.00 0.00 2.74
954 1004 3.388024 TCTCAAACACCAAGCTCTACTGT 59.612 43.478 0.00 0.00 0.00 3.55
955 1005 3.993081 CTCTCAAACACCAAGCTCTACTG 59.007 47.826 0.00 0.00 0.00 2.74
956 1006 3.898123 TCTCTCAAACACCAAGCTCTACT 59.102 43.478 0.00 0.00 0.00 2.57
957 1007 3.991121 GTCTCTCAAACACCAAGCTCTAC 59.009 47.826 0.00 0.00 0.00 2.59
958 1008 3.305403 CGTCTCTCAAACACCAAGCTCTA 60.305 47.826 0.00 0.00 0.00 2.43
961 1011 1.412710 TCGTCTCTCAAACACCAAGCT 59.587 47.619 0.00 0.00 0.00 3.74
985 1035 1.141019 CCATTGGTCGACGACGGAT 59.859 57.895 20.92 14.11 40.21 4.18
989 1039 0.174845 TGGATCCATTGGTCGACGAC 59.825 55.000 19.70 19.70 0.00 4.34
1228 1280 2.083774 CAAGCTCGCAGATAAACCCAA 58.916 47.619 0.00 0.00 33.89 4.12
1234 1288 3.592898 TCAGTTCAAGCTCGCAGATAA 57.407 42.857 0.00 0.00 33.89 1.75
1237 1291 2.071540 CATTCAGTTCAAGCTCGCAGA 58.928 47.619 0.00 0.00 0.00 4.26
1238 1292 1.802960 ACATTCAGTTCAAGCTCGCAG 59.197 47.619 0.00 0.00 0.00 5.18
1241 1295 5.036737 ACAAAAACATTCAGTTCAAGCTCG 58.963 37.500 0.00 0.00 40.26 5.03
1247 1301 4.974368 ACCGACAAAAACATTCAGTTCA 57.026 36.364 0.00 0.00 40.26 3.18
1248 1302 9.916397 CTATATACCGACAAAAACATTCAGTTC 57.084 33.333 0.00 0.00 40.26 3.01
1261 1315 2.694628 ACCGCAACCTATATACCGACAA 59.305 45.455 0.00 0.00 0.00 3.18
1266 1320 4.952460 TCAAGAACCGCAACCTATATACC 58.048 43.478 0.00 0.00 0.00 2.73
1269 1325 4.694339 GACTCAAGAACCGCAACCTATAT 58.306 43.478 0.00 0.00 0.00 0.86
1421 1477 2.807472 CGGCTGGTTGTTGTAGTGGTTA 60.807 50.000 0.00 0.00 0.00 2.85
1532 1594 4.157958 GCGTAGTGCTGCTGCTGC 62.158 66.667 22.51 22.51 41.73 5.25
1634 1696 2.579201 CGCTTGGAGATGACGGGT 59.421 61.111 0.00 0.00 0.00 5.28
1641 1703 1.320344 TGGACGTAGCGCTTGGAGAT 61.320 55.000 18.68 0.00 0.00 2.75
1976 2041 2.203238 TGCTTGTGCTGCTGCTGA 60.203 55.556 17.00 0.05 40.48 4.26
1977 2042 2.255554 CTGCTTGTGCTGCTGCTG 59.744 61.111 17.00 0.77 40.48 4.41
1978 2043 2.971095 TTCCTGCTTGTGCTGCTGCT 62.971 55.000 17.00 0.00 40.48 4.24
1979 2044 2.473664 CTTCCTGCTTGTGCTGCTGC 62.474 60.000 8.89 8.89 40.48 5.25
1980 2045 1.579932 CTTCCTGCTTGTGCTGCTG 59.420 57.895 0.00 0.00 40.48 4.41
1981 2046 2.266627 GCTTCCTGCTTGTGCTGCT 61.267 57.895 0.00 0.00 40.48 4.24
1982 2047 2.257676 GCTTCCTGCTTGTGCTGC 59.742 61.111 0.00 0.00 40.48 5.25
1983 2048 2.559840 CGCTTCCTGCTTGTGCTG 59.440 61.111 0.00 0.00 40.48 4.41
1984 2049 3.360340 GCGCTTCCTGCTTGTGCT 61.360 61.111 0.00 0.00 40.48 4.40
2046 2111 1.823295 CCAGGTTCCGACGGATCAT 59.177 57.895 19.12 12.18 0.00 2.45
2057 2122 1.817099 CATCTGCTCCGCCAGGTTC 60.817 63.158 0.00 0.00 39.05 3.62
2168 2233 6.039382 GTGTCTTCTAATGCGGGGATTAATTT 59.961 38.462 0.00 0.00 0.00 1.82
2180 2245 0.025513 CGCGCAGTGTCTTCTAATGC 59.974 55.000 8.75 0.00 0.00 3.56
2184 2249 2.126071 GCCGCGCAGTGTCTTCTA 60.126 61.111 8.75 0.00 35.45 2.10
2256 2327 4.697756 TTTGACGGAGGCGGCAGG 62.698 66.667 13.08 1.57 0.00 4.85
2274 2345 1.370414 CGCTGGTTTTTCTGCGTGG 60.370 57.895 7.72 0.00 45.53 4.94
2278 2349 1.335051 GGTTCTCGCTGGTTTTTCTGC 60.335 52.381 0.00 0.00 0.00 4.26
2302 2374 3.141522 TTCGTCGTTGGTCAGGCGT 62.142 57.895 0.00 0.00 0.00 5.68
2358 2430 1.815817 TTACACGAGCAGCAGGAGCA 61.816 55.000 0.00 0.00 45.49 4.26
2361 2433 2.232696 TGTATTTACACGAGCAGCAGGA 59.767 45.455 0.00 0.00 0.00 3.86
2362 2434 2.616960 TGTATTTACACGAGCAGCAGG 58.383 47.619 0.00 0.00 0.00 4.85
2410 2486 9.053840 TCTACTAGAGTACATTACATGCTACAC 57.946 37.037 0.00 0.00 0.00 2.90
2411 2487 9.794719 ATCTACTAGAGTACATTACATGCTACA 57.205 33.333 0.00 0.00 0.00 2.74
2415 2491 7.371159 TGCATCTACTAGAGTACATTACATGC 58.629 38.462 0.00 0.00 33.82 4.06
2551 2927 4.175787 ACTGAGAATGTACGGTGACTTC 57.824 45.455 0.00 0.00 0.00 3.01
2596 2972 1.741706 AGCAGCACATGTGTATTGAGC 59.258 47.619 26.01 18.99 0.00 4.26
2626 3004 5.103000 CGTAGTAGTTTGGTTCAGAGGATG 58.897 45.833 0.00 0.00 0.00 3.51
2627 3005 4.159879 CCGTAGTAGTTTGGTTCAGAGGAT 59.840 45.833 0.00 0.00 0.00 3.24
2628 3006 3.508793 CCGTAGTAGTTTGGTTCAGAGGA 59.491 47.826 0.00 0.00 0.00 3.71
2629 3007 3.368116 CCCGTAGTAGTTTGGTTCAGAGG 60.368 52.174 0.00 0.00 0.00 3.69
2630 3008 3.368116 CCCCGTAGTAGTTTGGTTCAGAG 60.368 52.174 0.00 0.00 0.00 3.35
2631 3009 2.564062 CCCCGTAGTAGTTTGGTTCAGA 59.436 50.000 0.00 0.00 0.00 3.27
2632 3010 2.301009 ACCCCGTAGTAGTTTGGTTCAG 59.699 50.000 0.00 0.00 0.00 3.02
2633 3011 2.328319 ACCCCGTAGTAGTTTGGTTCA 58.672 47.619 0.00 0.00 0.00 3.18
2634 3012 4.743057 ATACCCCGTAGTAGTTTGGTTC 57.257 45.455 0.00 0.00 0.00 3.62
2635 3013 5.272402 ACTATACCCCGTAGTAGTTTGGTT 58.728 41.667 0.00 0.00 30.91 3.67
2636 3014 4.871822 ACTATACCCCGTAGTAGTTTGGT 58.128 43.478 0.00 0.00 30.91 3.67
2637 3015 5.827797 TGTACTATACCCCGTAGTAGTTTGG 59.172 44.000 0.00 0.00 35.83 3.28
2638 3016 6.543831 ACTGTACTATACCCCGTAGTAGTTTG 59.456 42.308 0.00 0.00 35.83 2.93
2639 3017 6.663734 ACTGTACTATACCCCGTAGTAGTTT 58.336 40.000 0.00 0.00 35.83 2.66
2640 3018 6.253946 ACTGTACTATACCCCGTAGTAGTT 57.746 41.667 0.00 0.00 35.83 2.24
2641 3019 5.896073 ACTGTACTATACCCCGTAGTAGT 57.104 43.478 0.00 0.00 35.83 2.73
2642 3020 5.872070 GCTACTGTACTATACCCCGTAGTAG 59.128 48.000 0.00 0.00 35.83 2.57
2643 3021 5.306937 TGCTACTGTACTATACCCCGTAGTA 59.693 44.000 0.00 0.00 34.43 1.82
2644 3022 4.103153 TGCTACTGTACTATACCCCGTAGT 59.897 45.833 0.00 0.00 36.44 2.73
2645 3023 4.645535 TGCTACTGTACTATACCCCGTAG 58.354 47.826 0.00 0.00 0.00 3.51
2646 3024 4.705110 TGCTACTGTACTATACCCCGTA 57.295 45.455 0.00 0.00 0.00 4.02
2647 3025 3.582998 TGCTACTGTACTATACCCCGT 57.417 47.619 0.00 0.00 0.00 5.28
2648 3026 3.304257 CGTTGCTACTGTACTATACCCCG 60.304 52.174 0.00 0.00 0.00 5.73
2649 3027 3.885297 TCGTTGCTACTGTACTATACCCC 59.115 47.826 0.00 0.00 0.00 4.95
2650 3028 4.818546 TCTCGTTGCTACTGTACTATACCC 59.181 45.833 0.00 0.00 0.00 3.69
2651 3029 5.998454 TCTCGTTGCTACTGTACTATACC 57.002 43.478 0.00 0.00 0.00 2.73
2652 3030 8.344098 AGATTTCTCGTTGCTACTGTACTATAC 58.656 37.037 0.00 0.00 0.00 1.47
2653 3031 8.447924 AGATTTCTCGTTGCTACTGTACTATA 57.552 34.615 0.00 0.00 0.00 1.31
2654 3032 7.336161 AGATTTCTCGTTGCTACTGTACTAT 57.664 36.000 0.00 0.00 0.00 2.12
2655 3033 6.754702 AGATTTCTCGTTGCTACTGTACTA 57.245 37.500 0.00 0.00 0.00 1.82
2656 3034 5.642686 GAGATTTCTCGTTGCTACTGTACT 58.357 41.667 0.00 0.00 32.78 2.73
2657 3035 5.935448 GAGATTTCTCGTTGCTACTGTAC 57.065 43.478 0.00 0.00 32.78 2.90
2718 3096 2.364647 GACCCTTTCCGGATAAGATCGT 59.635 50.000 21.00 15.25 33.16 3.73
2730 3108 1.078637 GCCTACGTGGACCCTTTCC 60.079 63.158 0.00 0.00 46.13 3.13
2895 3275 2.044551 CAGCTTCCCTGCTTCCCC 60.045 66.667 0.00 0.00 41.98 4.81
2900 3280 3.655211 CCACCCAGCTTCCCTGCT 61.655 66.667 0.00 0.00 45.18 4.24
2970 3350 2.932614 GACAAATCACTCCATCCGTGAG 59.067 50.000 0.00 0.00 43.82 3.51
2971 3351 2.301583 TGACAAATCACTCCATCCGTGA 59.698 45.455 0.00 0.00 44.59 4.35
2972 3352 2.698803 TGACAAATCACTCCATCCGTG 58.301 47.619 0.00 0.00 0.00 4.94
2973 3353 3.417069 TTGACAAATCACTCCATCCGT 57.583 42.857 0.00 0.00 33.38 4.69
2974 3354 4.023279 TGTTTTGACAAATCACTCCATCCG 60.023 41.667 7.45 0.00 33.38 4.18
3069 3452 7.607991 TCAAAGCCGAAGAGAAATAAAAGAGAT 59.392 33.333 0.00 0.00 0.00 2.75
3082 3481 0.586319 TGCGTTTCAAAGCCGAAGAG 59.414 50.000 0.00 0.00 32.21 2.85
3089 3488 4.537015 ACAATAGAAGTGCGTTTCAAAGC 58.463 39.130 3.27 0.00 0.00 3.51
3099 3498 9.607285 TCGAAGATTTTAAAACAATAGAAGTGC 57.393 29.630 1.97 0.00 0.00 4.40
3106 3505 9.729281 AGTACCCTCGAAGATTTTAAAACAATA 57.271 29.630 1.97 0.00 33.89 1.90
3107 3506 8.512138 CAGTACCCTCGAAGATTTTAAAACAAT 58.488 33.333 1.97 0.00 33.89 2.71
3110 3509 6.622245 GCCAGTACCCTCGAAGATTTTAAAAC 60.622 42.308 1.97 0.00 33.89 2.43
3111 3510 5.413523 GCCAGTACCCTCGAAGATTTTAAAA 59.586 40.000 2.51 2.51 33.89 1.52
3112 3511 4.939439 GCCAGTACCCTCGAAGATTTTAAA 59.061 41.667 0.00 0.00 33.89 1.52
3113 3512 4.510571 GCCAGTACCCTCGAAGATTTTAA 58.489 43.478 0.00 0.00 33.89 1.52
3124 3527 3.635510 CTGGAGGCCAGTACCCTC 58.364 66.667 5.01 7.86 45.82 4.30
3132 3535 4.166888 GCGCAGATCTGGAGGCCA 62.167 66.667 23.89 0.00 0.00 5.36
3135 3538 1.804396 ATCTCGCGCAGATCTGGAGG 61.804 60.000 23.89 9.74 37.24 4.30
3147 3550 3.717350 AAAAGAAAACGGTATCTCGCG 57.283 42.857 0.00 0.00 0.00 5.87
3148 3551 6.685828 GGATTTAAAAGAAAACGGTATCTCGC 59.314 38.462 0.00 0.00 0.00 5.03
3149 3552 7.184779 GGGATTTAAAAGAAAACGGTATCTCG 58.815 38.462 0.00 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.