Multiple sequence alignment - TraesCS6B01G175000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G175000 chr6B 100.000 3387 0 0 1 3387 189531445 189528059 0.000000e+00 6255
1 TraesCS6B01G175000 chr6D 90.827 2769 124 48 1 2683 104301590 104298866 0.000000e+00 3587
2 TraesCS6B01G175000 chr6D 84.293 382 31 9 2679 3033 104298346 104297967 2.500000e-91 346
3 TraesCS6B01G175000 chr6A 88.603 1790 118 31 992 2721 125883493 125881730 0.000000e+00 2097
4 TraesCS6B01G175000 chr6A 88.309 556 32 18 458 983 125884095 125883543 1.330000e-178 636
5 TraesCS6B01G175000 chr6A 87.936 373 11 8 1 360 125884451 125884100 3.150000e-110 409
6 TraesCS6B01G175000 chr5B 86.880 343 43 2 3047 3387 51035991 51035649 1.910000e-102 383
7 TraesCS6B01G175000 chr2B 91.135 282 23 2 3047 3327 358051370 358051090 6.860000e-102 381
8 TraesCS6B01G175000 chr7B 86.510 341 45 1 3048 3387 579816242 579816582 1.150000e-99 374
9 TraesCS6B01G175000 chr5D 82.927 123 17 3 2713 2832 411893207 411893086 1.290000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G175000 chr6B 189528059 189531445 3386 True 6255.000000 6255 100.000000 1 3387 1 chr6B.!!$R1 3386
1 TraesCS6B01G175000 chr6D 104297967 104301590 3623 True 1966.500000 3587 87.560000 1 3033 2 chr6D.!!$R1 3032
2 TraesCS6B01G175000 chr6A 125881730 125884451 2721 True 1047.333333 2097 88.282667 1 2721 3 chr6A.!!$R1 2720

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
500 532 1.072173 CACAGGAGGATGTCACACCAA 59.928 52.381 0.09 0.0 0.00 3.67 F
1306 1419 0.594796 CGCTTGTTGGTGGTTTCAGC 60.595 55.000 0.00 0.0 41.42 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1718 1847 0.526662 CGTAGAACAGCCCGTCTCTT 59.473 55.0 0.0 0.0 0.00 2.85 R
2772 3476 0.030638 CAAAAGTCTGGCAACCCACG 59.969 55.0 0.0 0.0 35.79 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
369 392 6.509418 TGCACTTATTTTAAGCGATTTCCT 57.491 33.333 0.00 0.00 0.00 3.36
388 411 2.753452 CCTCAAGTACGGAACTGCTCTA 59.247 50.000 0.00 0.00 38.88 2.43
471 498 1.831106 TGGAACGGATATCAGCAGTGT 59.169 47.619 4.83 0.00 0.00 3.55
479 506 3.181451 GGATATCAGCAGTGTCATGGGAA 60.181 47.826 4.83 0.00 0.00 3.97
497 529 2.417719 GAACACAGGAGGATGTCACAC 58.582 52.381 0.00 0.00 0.00 3.82
500 532 1.072173 CACAGGAGGATGTCACACCAA 59.928 52.381 0.09 0.00 0.00 3.67
509 541 2.174363 TGTCACACCAAGAGATGCTG 57.826 50.000 0.00 0.00 0.00 4.41
515 547 2.038952 ACACCAAGAGATGCTGTTGCTA 59.961 45.455 0.00 0.00 40.48 3.49
553 585 2.668550 GTGGGTGCCTCGTTGGAC 60.669 66.667 1.63 0.00 38.35 4.02
577 609 4.115279 CATCACGCCGATGCTCTT 57.885 55.556 0.00 0.00 44.95 2.85
704 746 5.925397 AGAAGATTCGATCATTCATTCGAGG 59.075 40.000 0.00 0.00 44.32 4.63
733 775 3.202906 TCCTGTTCTTTCCAACGACTTG 58.797 45.455 0.00 0.00 0.00 3.16
881 926 2.433664 GTACCAACGCCACTCCCG 60.434 66.667 0.00 0.00 0.00 5.14
959 1019 3.500108 CCCATCCTCTGCTCTCTATCTCA 60.500 52.174 0.00 0.00 0.00 3.27
963 1023 4.460263 TCCTCTGCTCTCTATCTCACTTC 58.540 47.826 0.00 0.00 0.00 3.01
973 1035 5.665360 TCTCTATCTCACTTCCTCTCTCTCA 59.335 44.000 0.00 0.00 0.00 3.27
983 1061 1.477558 CCTCTCTCTCAGCCTCTCTCC 60.478 61.905 0.00 0.00 0.00 3.71
987 1065 2.757508 CTCAGCCTCTCTCCGCCA 60.758 66.667 0.00 0.00 0.00 5.69
988 1066 2.283894 TCAGCCTCTCTCCGCCAA 60.284 61.111 0.00 0.00 0.00 4.52
989 1067 2.186384 CAGCCTCTCTCCGCCAAG 59.814 66.667 0.00 0.00 0.00 3.61
990 1068 2.038007 AGCCTCTCTCCGCCAAGA 59.962 61.111 0.00 0.00 0.00 3.02
997 1098 2.185350 CTCCGCCAAGATCGTGCT 59.815 61.111 2.75 0.00 0.00 4.40
1113 1220 4.736896 GACGAGGTGGCGGTGGAC 62.737 72.222 0.00 0.00 35.12 4.02
1306 1419 0.594796 CGCTTGTTGGTGGTTTCAGC 60.595 55.000 0.00 0.00 41.42 4.26
1307 1420 0.746659 GCTTGTTGGTGGTTTCAGCT 59.253 50.000 0.00 0.00 41.59 4.24
1308 1421 1.136891 GCTTGTTGGTGGTTTCAGCTT 59.863 47.619 0.00 0.00 41.59 3.74
1309 1422 2.799562 GCTTGTTGGTGGTTTCAGCTTC 60.800 50.000 0.00 0.00 41.59 3.86
1310 1423 2.136298 TGTTGGTGGTTTCAGCTTCA 57.864 45.000 0.00 0.00 41.59 3.02
1311 1424 2.665165 TGTTGGTGGTTTCAGCTTCAT 58.335 42.857 0.00 0.00 41.59 2.57
1312 1425 3.826524 TGTTGGTGGTTTCAGCTTCATA 58.173 40.909 0.00 0.00 41.59 2.15
1313 1426 4.406456 TGTTGGTGGTTTCAGCTTCATAT 58.594 39.130 0.00 0.00 41.59 1.78
1314 1427 4.832266 TGTTGGTGGTTTCAGCTTCATATT 59.168 37.500 0.00 0.00 41.59 1.28
1333 1454 7.739825 TCATATTTCATTACAGCTAGCCTCTT 58.260 34.615 12.13 0.00 0.00 2.85
1408 1537 2.125106 AGGATGGAAAGCGGCGAC 60.125 61.111 12.98 1.23 0.00 5.19
1410 1539 3.202706 GATGGAAAGCGGCGACCC 61.203 66.667 12.98 5.66 0.00 4.46
1729 1858 1.292541 GGAAACGAAGAGACGGGCT 59.707 57.895 0.00 0.00 37.61 5.19
1854 1983 0.873054 GACGTCGTCTGAAGTGGAGA 59.127 55.000 18.09 0.00 36.93 3.71
1859 1988 0.969894 CGTCTGAAGTGGAGAACCCT 59.030 55.000 0.00 0.00 35.38 4.34
1860 1989 2.168496 CGTCTGAAGTGGAGAACCCTA 58.832 52.381 0.00 0.00 35.38 3.53
1868 1997 1.030488 TGGAGAACCCTACGAGCTCG 61.030 60.000 33.45 33.45 39.70 5.03
1968 2101 5.619132 TGCTTCCTCTCATGAATACATCA 57.381 39.130 0.00 0.00 43.67 3.07
2048 2184 5.741982 GCGTGTTGTTTTCTATTTGTGTTCT 59.258 36.000 0.00 0.00 0.00 3.01
2054 2190 9.226345 GTTGTTTTCTATTTGTGTTCTTCTGAG 57.774 33.333 0.00 0.00 0.00 3.35
2107 2246 3.155167 GACGGGGGATTCGGAGCT 61.155 66.667 0.00 0.00 0.00 4.09
2140 2279 4.129737 GGCTACAGTGCGAGGCGA 62.130 66.667 3.78 0.00 0.00 5.54
2141 2280 2.126071 GCTACAGTGCGAGGCGAA 60.126 61.111 0.00 0.00 0.00 4.70
2158 2297 1.339610 CGAAGGCGAGATTCAGAGGAT 59.660 52.381 0.00 0.00 40.82 3.24
2164 2303 2.801342 GCGAGATTCAGAGGATGGACAC 60.801 54.545 0.00 0.00 0.00 3.67
2299 2450 2.881352 CGCGCGGAGAGAAAGGTC 60.881 66.667 24.84 0.00 0.00 3.85
2341 2492 2.738521 CTGTGGAAGGACACCGCG 60.739 66.667 0.00 0.00 40.62 6.46
2464 2629 2.803492 GCATTTCCGAATCTAGGCGAGT 60.803 50.000 0.00 0.00 0.00 4.18
2478 2643 3.112709 GAGTGCCCGAACGTGCTC 61.113 66.667 3.36 0.00 0.00 4.26
2528 2694 1.464734 GGGAAAAGCTTAGGTCCAGC 58.535 55.000 19.84 0.00 37.56 4.85
2567 2738 2.432874 TGTATATACTTGGTGCTGGCGT 59.567 45.455 13.89 0.00 0.00 5.68
2597 2768 7.355778 ACTGCAGAAAGATCTTTTAAAGAACG 58.644 34.615 23.35 8.56 41.63 3.95
2618 2789 6.673154 ACGTTTTGTTTAGTTCAGCTAAGT 57.327 33.333 0.00 0.00 40.41 2.24
2692 3390 4.568956 TGTGTATCACTGGAGACATGTTG 58.431 43.478 0.00 0.00 45.99 3.33
2722 3426 7.282585 TGCAAGTCTTATTATCATGCCTAACT 58.717 34.615 0.00 0.00 0.00 2.24
2745 3449 6.434028 ACTTTAGTCATGCCACAACATGTTAT 59.566 34.615 11.53 0.00 46.15 1.89
2770 3474 4.977963 CAGATGTTTGGTTCATTGTCACAC 59.022 41.667 0.00 0.00 0.00 3.82
2771 3475 4.644234 AGATGTTTGGTTCATTGTCACACA 59.356 37.500 0.00 0.00 0.00 3.72
2772 3476 4.103365 TGTTTGGTTCATTGTCACACAC 57.897 40.909 0.00 0.00 0.00 3.82
2778 3482 0.179234 TCATTGTCACACACGTGGGT 59.821 50.000 19.98 19.98 43.79 4.51
2782 3486 2.515057 TCACACACGTGGGTTGCC 60.515 61.111 23.52 0.00 43.79 4.52
2797 3501 1.953686 GTTGCCAGACTTTTGTAGCCA 59.046 47.619 0.00 0.00 0.00 4.75
2840 3544 6.934561 GCTTAGTTTTGCCAAATCTTGTAG 57.065 37.500 6.10 4.07 0.00 2.74
2862 3566 8.190122 TGTAGCATTTATGATGGTCATTTTGTC 58.810 33.333 0.00 0.00 38.26 3.18
2863 3567 7.172868 AGCATTTATGATGGTCATTTTGTCA 57.827 32.000 0.00 0.00 38.26 3.58
2870 3574 5.072055 TGATGGTCATTTTGTCAGTCACAT 58.928 37.500 0.00 0.00 33.90 3.21
2885 3589 2.262292 CATTTTGGGTGGCAGCCG 59.738 61.111 28.77 11.90 38.98 5.52
2903 3607 0.515564 CGCGGGTTGACTAAGGTTTG 59.484 55.000 0.00 0.00 0.00 2.93
2904 3608 1.601166 GCGGGTTGACTAAGGTTTGT 58.399 50.000 0.00 0.00 0.00 2.83
2906 3610 2.287368 GCGGGTTGACTAAGGTTTGTTG 60.287 50.000 0.00 0.00 0.00 3.33
2907 3611 2.946990 CGGGTTGACTAAGGTTTGTTGT 59.053 45.455 0.00 0.00 0.00 3.32
2908 3612 3.242936 CGGGTTGACTAAGGTTTGTTGTG 60.243 47.826 0.00 0.00 0.00 3.33
2910 3614 3.490249 GGTTGACTAAGGTTTGTTGTGGC 60.490 47.826 0.00 0.00 0.00 5.01
2911 3615 3.006112 TGACTAAGGTTTGTTGTGGCA 57.994 42.857 0.00 0.00 0.00 4.92
2914 3618 3.626930 ACTAAGGTTTGTTGTGGCAAGA 58.373 40.909 0.00 0.00 0.00 3.02
2915 3619 4.215109 ACTAAGGTTTGTTGTGGCAAGAT 58.785 39.130 0.00 0.00 0.00 2.40
2917 3621 5.830991 ACTAAGGTTTGTTGTGGCAAGATTA 59.169 36.000 0.00 0.00 0.00 1.75
2918 3622 4.853924 AGGTTTGTTGTGGCAAGATTAG 57.146 40.909 0.00 0.00 0.00 1.73
2924 3653 2.749621 GTTGTGGCAAGATTAGTCCCAG 59.250 50.000 0.00 0.00 0.00 4.45
2972 3701 1.751351 TCTTCTAGTCGAGGTGCATGG 59.249 52.381 0.00 0.00 0.00 3.66
3012 3741 2.642311 TCTCCTCACCCAAGCAACATAA 59.358 45.455 0.00 0.00 0.00 1.90
3017 3746 6.296026 TCCTCACCCAAGCAACATAATATAC 58.704 40.000 0.00 0.00 0.00 1.47
3021 3750 4.755123 ACCCAAGCAACATAATATACTCGC 59.245 41.667 0.00 0.00 0.00 5.03
3041 3770 8.460831 ACTCGCAATTACCAAATTTTTATGTC 57.539 30.769 0.00 0.00 32.87 3.06
3042 3771 8.303876 ACTCGCAATTACCAAATTTTTATGTCT 58.696 29.630 0.00 0.00 32.87 3.41
3043 3772 9.139174 CTCGCAATTACCAAATTTTTATGTCTT 57.861 29.630 0.00 0.00 32.87 3.01
3044 3773 8.920665 TCGCAATTACCAAATTTTTATGTCTTG 58.079 29.630 0.00 0.00 32.87 3.02
3045 3774 8.707839 CGCAATTACCAAATTTTTATGTCTTGT 58.292 29.630 0.00 0.00 32.87 3.16
3046 3775 9.810231 GCAATTACCAAATTTTTATGTCTTGTG 57.190 29.630 0.00 0.00 32.87 3.33
3047 3776 9.810231 CAATTACCAAATTTTTATGTCTTGTGC 57.190 29.630 0.00 0.00 32.87 4.57
3048 3777 9.553064 AATTACCAAATTTTTATGTCTTGTGCA 57.447 25.926 0.00 0.00 30.98 4.57
3049 3778 8.586570 TTACCAAATTTTTATGTCTTGTGCAG 57.413 30.769 0.00 0.00 0.00 4.41
3050 3779 6.815089 ACCAAATTTTTATGTCTTGTGCAGA 58.185 32.000 0.00 0.00 0.00 4.26
3051 3780 7.444299 ACCAAATTTTTATGTCTTGTGCAGAT 58.556 30.769 0.00 0.00 32.60 2.90
3052 3781 7.933033 ACCAAATTTTTATGTCTTGTGCAGATT 59.067 29.630 0.00 0.00 32.60 2.40
3053 3782 9.421806 CCAAATTTTTATGTCTTGTGCAGATTA 57.578 29.630 0.00 0.00 32.60 1.75
3055 3784 8.986477 AATTTTTATGTCTTGTGCAGATTACC 57.014 30.769 0.00 0.00 32.60 2.85
3056 3785 5.794687 TTTATGTCTTGTGCAGATTACCG 57.205 39.130 0.00 0.00 32.60 4.02
3057 3786 2.093306 TGTCTTGTGCAGATTACCGG 57.907 50.000 0.00 0.00 32.60 5.28
3058 3787 1.338674 TGTCTTGTGCAGATTACCGGG 60.339 52.381 6.32 0.00 32.60 5.73
3059 3788 0.981183 TCTTGTGCAGATTACCGGGT 59.019 50.000 6.32 4.46 0.00 5.28
3060 3789 1.086696 CTTGTGCAGATTACCGGGTG 58.913 55.000 10.66 0.00 0.00 4.61
3061 3790 0.322098 TTGTGCAGATTACCGGGTGG 60.322 55.000 10.66 0.00 42.84 4.61
3062 3791 1.195442 TGTGCAGATTACCGGGTGGA 61.195 55.000 10.66 0.00 39.21 4.02
3063 3792 0.035820 GTGCAGATTACCGGGTGGAA 60.036 55.000 10.66 0.00 39.21 3.53
3064 3793 0.251916 TGCAGATTACCGGGTGGAAG 59.748 55.000 10.66 0.00 39.21 3.46
3065 3794 0.463833 GCAGATTACCGGGTGGAAGG 60.464 60.000 10.66 0.00 39.21 3.46
3066 3795 0.180406 CAGATTACCGGGTGGAAGGG 59.820 60.000 10.66 0.00 39.21 3.95
3067 3796 1.153025 GATTACCGGGTGGAAGGGC 60.153 63.158 10.66 0.00 39.21 5.19
3068 3797 1.917336 GATTACCGGGTGGAAGGGCA 61.917 60.000 10.66 0.00 39.21 5.36
3069 3798 1.502527 ATTACCGGGTGGAAGGGCAA 61.503 55.000 10.66 0.00 39.21 4.52
3070 3799 2.132089 TTACCGGGTGGAAGGGCAAG 62.132 60.000 10.66 0.00 39.21 4.01
3071 3800 3.646715 CCGGGTGGAAGGGCAAGA 61.647 66.667 0.00 0.00 37.49 3.02
3072 3801 2.434331 CGGGTGGAAGGGCAAGAA 59.566 61.111 0.00 0.00 0.00 2.52
3073 3802 1.971695 CGGGTGGAAGGGCAAGAAC 60.972 63.158 0.00 0.00 0.00 3.01
3074 3803 1.460699 GGGTGGAAGGGCAAGAACT 59.539 57.895 0.00 0.00 0.00 3.01
3075 3804 0.178961 GGGTGGAAGGGCAAGAACTT 60.179 55.000 0.00 0.00 0.00 2.66
3076 3805 1.074889 GGGTGGAAGGGCAAGAACTTA 59.925 52.381 0.00 0.00 0.00 2.24
3077 3806 2.437413 GGTGGAAGGGCAAGAACTTAG 58.563 52.381 0.00 0.00 0.00 2.18
3078 3807 1.813178 GTGGAAGGGCAAGAACTTAGC 59.187 52.381 0.00 0.00 0.00 3.09
3079 3808 1.423541 TGGAAGGGCAAGAACTTAGCA 59.576 47.619 0.00 0.00 0.00 3.49
3080 3809 2.041620 TGGAAGGGCAAGAACTTAGCAT 59.958 45.455 0.00 0.00 0.00 3.79
3081 3810 2.424956 GGAAGGGCAAGAACTTAGCATG 59.575 50.000 0.00 0.00 0.00 4.06
3082 3811 2.134789 AGGGCAAGAACTTAGCATGG 57.865 50.000 0.00 0.00 0.00 3.66
3083 3812 0.457443 GGGCAAGAACTTAGCATGGC 59.543 55.000 0.00 0.00 35.99 4.40
3084 3813 0.457443 GGCAAGAACTTAGCATGGCC 59.543 55.000 0.00 0.00 0.00 5.36
3085 3814 0.099436 GCAAGAACTTAGCATGGCCG 59.901 55.000 0.00 0.00 0.00 6.13
3086 3815 0.734889 CAAGAACTTAGCATGGCCGG 59.265 55.000 0.00 0.00 0.00 6.13
3087 3816 0.394352 AAGAACTTAGCATGGCCGGG 60.394 55.000 2.18 0.00 0.00 5.73
3088 3817 1.223487 GAACTTAGCATGGCCGGGA 59.777 57.895 2.18 0.00 0.00 5.14
3089 3818 0.393808 GAACTTAGCATGGCCGGGAA 60.394 55.000 2.18 0.00 0.00 3.97
3090 3819 0.394352 AACTTAGCATGGCCGGGAAG 60.394 55.000 2.18 0.00 0.00 3.46
3091 3820 1.526917 CTTAGCATGGCCGGGAAGG 60.527 63.158 2.18 0.00 44.97 3.46
3092 3821 2.965716 CTTAGCATGGCCGGGAAGGG 62.966 65.000 2.18 0.00 41.48 3.95
3095 3824 3.411517 CATGGCCGGGAAGGGTCT 61.412 66.667 2.18 0.00 41.48 3.85
3096 3825 3.090532 ATGGCCGGGAAGGGTCTC 61.091 66.667 2.18 0.00 41.48 3.36
3106 3835 3.393360 AGGGTCTCCTTGGCGAAG 58.607 61.111 0.74 0.74 41.56 3.79
3107 3836 1.536662 AGGGTCTCCTTGGCGAAGT 60.537 57.895 7.74 0.00 41.56 3.01
3108 3837 1.079057 GGGTCTCCTTGGCGAAGTC 60.079 63.158 7.74 0.00 0.00 3.01
3109 3838 1.545706 GGGTCTCCTTGGCGAAGTCT 61.546 60.000 7.74 0.00 0.00 3.24
3110 3839 0.390472 GGTCTCCTTGGCGAAGTCTG 60.390 60.000 7.74 0.00 0.00 3.51
3111 3840 0.318762 GTCTCCTTGGCGAAGTCTGT 59.681 55.000 7.74 0.00 0.00 3.41
3112 3841 0.603569 TCTCCTTGGCGAAGTCTGTC 59.396 55.000 7.74 0.00 0.00 3.51
3113 3842 0.605589 CTCCTTGGCGAAGTCTGTCT 59.394 55.000 7.74 0.00 0.00 3.41
3114 3843 1.001406 CTCCTTGGCGAAGTCTGTCTT 59.999 52.381 7.74 0.00 39.32 3.01
3115 3844 1.151668 CCTTGGCGAAGTCTGTCTTG 58.848 55.000 7.74 0.00 36.40 3.02
3116 3845 1.541233 CCTTGGCGAAGTCTGTCTTGT 60.541 52.381 7.74 0.00 36.40 3.16
3117 3846 1.528586 CTTGGCGAAGTCTGTCTTGTG 59.471 52.381 0.00 0.00 36.40 3.33
3118 3847 0.880278 TGGCGAAGTCTGTCTTGTGC 60.880 55.000 0.00 0.00 36.40 4.57
3119 3848 1.488957 GCGAAGTCTGTCTTGTGCG 59.511 57.895 0.00 0.00 36.40 5.34
3120 3849 1.488957 CGAAGTCTGTCTTGTGCGC 59.511 57.895 0.00 0.00 36.40 6.09
3121 3850 0.941463 CGAAGTCTGTCTTGTGCGCT 60.941 55.000 9.73 0.00 36.40 5.92
3122 3851 1.666023 CGAAGTCTGTCTTGTGCGCTA 60.666 52.381 9.73 0.00 36.40 4.26
3123 3852 2.611518 GAAGTCTGTCTTGTGCGCTAT 58.388 47.619 9.73 0.00 36.40 2.97
3124 3853 2.751166 AGTCTGTCTTGTGCGCTATT 57.249 45.000 9.73 0.00 0.00 1.73
3125 3854 2.341257 AGTCTGTCTTGTGCGCTATTG 58.659 47.619 9.73 0.00 0.00 1.90
3126 3855 1.078709 TCTGTCTTGTGCGCTATTGC 58.921 50.000 9.73 0.00 0.00 3.56
3127 3856 0.097674 CTGTCTTGTGCGCTATTGCC 59.902 55.000 9.73 0.00 35.36 4.52
3128 3857 0.605050 TGTCTTGTGCGCTATTGCCA 60.605 50.000 9.73 0.00 35.36 4.92
3129 3858 0.179189 GTCTTGTGCGCTATTGCCAC 60.179 55.000 9.73 11.66 39.29 5.01
3130 3859 1.137404 CTTGTGCGCTATTGCCACC 59.863 57.895 9.73 0.00 38.61 4.61
3131 3860 2.270297 CTTGTGCGCTATTGCCACCC 62.270 60.000 9.73 0.00 38.61 4.61
3132 3861 2.749839 GTGCGCTATTGCCACCCA 60.750 61.111 9.73 0.00 35.68 4.51
3133 3862 2.749839 TGCGCTATTGCCACCCAC 60.750 61.111 9.73 0.00 35.36 4.61
3134 3863 3.518068 GCGCTATTGCCACCCACC 61.518 66.667 0.00 0.00 35.36 4.61
3135 3864 2.045438 CGCTATTGCCACCCACCA 60.045 61.111 0.00 0.00 35.36 4.17
3136 3865 2.406616 CGCTATTGCCACCCACCAC 61.407 63.158 0.00 0.00 35.36 4.16
3137 3866 2.052104 GCTATTGCCACCCACCACC 61.052 63.158 0.00 0.00 0.00 4.61
3138 3867 1.691219 CTATTGCCACCCACCACCT 59.309 57.895 0.00 0.00 0.00 4.00
3139 3868 0.394352 CTATTGCCACCCACCACCTC 60.394 60.000 0.00 0.00 0.00 3.85
3140 3869 1.136961 TATTGCCACCCACCACCTCA 61.137 55.000 0.00 0.00 0.00 3.86
3141 3870 2.713531 ATTGCCACCCACCACCTCAC 62.714 60.000 0.00 0.00 0.00 3.51
3142 3871 3.570212 GCCACCCACCACCTCACT 61.570 66.667 0.00 0.00 0.00 3.41
3143 3872 2.431683 CCACCCACCACCTCACTG 59.568 66.667 0.00 0.00 0.00 3.66
3144 3873 2.281761 CACCCACCACCTCACTGC 60.282 66.667 0.00 0.00 0.00 4.40
3145 3874 3.941188 ACCCACCACCTCACTGCG 61.941 66.667 0.00 0.00 0.00 5.18
3147 3876 4.320456 CCACCACCTCACTGCGCT 62.320 66.667 9.73 0.00 0.00 5.92
3148 3877 2.740055 CACCACCTCACTGCGCTC 60.740 66.667 9.73 0.00 0.00 5.03
3149 3878 4.008933 ACCACCTCACTGCGCTCC 62.009 66.667 9.73 0.00 0.00 4.70
3150 3879 4.767255 CCACCTCACTGCGCTCCC 62.767 72.222 9.73 0.00 0.00 4.30
3151 3880 4.767255 CACCTCACTGCGCTCCCC 62.767 72.222 9.73 0.00 0.00 4.81
3154 3883 3.710722 CTCACTGCGCTCCCCCTT 61.711 66.667 9.73 0.00 0.00 3.95
3155 3884 3.672295 CTCACTGCGCTCCCCCTTC 62.672 68.421 9.73 0.00 0.00 3.46
3156 3885 4.785453 CACTGCGCTCCCCCTTCC 62.785 72.222 9.73 0.00 0.00 3.46
3162 3891 4.803908 GCTCCCCCTTCCGGCTTG 62.804 72.222 0.00 0.00 0.00 4.01
3163 3892 4.115199 CTCCCCCTTCCGGCTTGG 62.115 72.222 0.00 0.00 40.09 3.61
3167 3896 4.676951 CCCTTCCGGCTTGGGCAA 62.677 66.667 12.19 0.00 40.87 4.52
3168 3897 2.600173 CCTTCCGGCTTGGGCAAA 60.600 61.111 0.00 0.00 40.87 3.68
3169 3898 1.984026 CCTTCCGGCTTGGGCAAAT 60.984 57.895 0.00 0.00 40.87 2.32
3170 3899 1.512694 CTTCCGGCTTGGGCAAATC 59.487 57.895 0.00 0.00 40.87 2.17
3171 3900 1.228706 TTCCGGCTTGGGCAAATCA 60.229 52.632 0.00 0.00 40.87 2.57
3172 3901 1.531739 TTCCGGCTTGGGCAAATCAC 61.532 55.000 0.00 0.00 40.87 3.06
3173 3902 2.274645 CCGGCTTGGGCAAATCACA 61.275 57.895 0.00 0.00 40.87 3.58
3174 3903 1.664873 CGGCTTGGGCAAATCACAA 59.335 52.632 0.00 0.00 40.87 3.33
3175 3904 0.388907 CGGCTTGGGCAAATCACAAG 60.389 55.000 2.75 2.75 43.28 3.16
3178 3907 2.825861 CTTGGGCAAATCACAAGCTT 57.174 45.000 0.00 0.00 35.70 3.74
3179 3908 3.940209 CTTGGGCAAATCACAAGCTTA 57.060 42.857 0.00 0.00 35.70 3.09
3180 3909 3.841643 CTTGGGCAAATCACAAGCTTAG 58.158 45.455 0.00 0.00 35.70 2.18
3181 3910 1.545582 TGGGCAAATCACAAGCTTAGC 59.454 47.619 0.00 0.00 0.00 3.09
3182 3911 1.545582 GGGCAAATCACAAGCTTAGCA 59.454 47.619 7.07 0.00 0.00 3.49
3183 3912 2.029110 GGGCAAATCACAAGCTTAGCAA 60.029 45.455 7.07 0.00 0.00 3.91
3184 3913 3.248266 GGCAAATCACAAGCTTAGCAAG 58.752 45.455 7.07 0.14 0.00 4.01
3185 3914 3.057315 GGCAAATCACAAGCTTAGCAAGA 60.057 43.478 7.07 0.00 0.00 3.02
3186 3915 4.381292 GGCAAATCACAAGCTTAGCAAGAT 60.381 41.667 7.07 1.05 0.00 2.40
3187 3916 5.166398 GCAAATCACAAGCTTAGCAAGATT 58.834 37.500 7.07 7.23 37.67 2.40
3188 3917 5.636543 GCAAATCACAAGCTTAGCAAGATTT 59.363 36.000 7.07 12.43 34.36 2.17
3189 3918 6.183360 GCAAATCACAAGCTTAGCAAGATTTC 60.183 38.462 16.83 11.43 34.36 2.17
3190 3919 6.830873 AATCACAAGCTTAGCAAGATTTCT 57.169 33.333 7.07 0.00 34.36 2.52
3191 3920 5.869753 TCACAAGCTTAGCAAGATTTCTC 57.130 39.130 7.07 0.00 34.36 2.87
3192 3921 4.389992 TCACAAGCTTAGCAAGATTTCTCG 59.610 41.667 7.07 0.00 34.36 4.04
3193 3922 4.153117 CACAAGCTTAGCAAGATTTCTCGT 59.847 41.667 7.07 0.00 34.36 4.18
3194 3923 5.348724 CACAAGCTTAGCAAGATTTCTCGTA 59.651 40.000 7.07 0.00 34.36 3.43
3195 3924 5.932303 ACAAGCTTAGCAAGATTTCTCGTAA 59.068 36.000 7.07 0.00 34.36 3.18
3196 3925 6.128526 ACAAGCTTAGCAAGATTTCTCGTAAC 60.129 38.462 7.07 0.00 34.36 2.50
3197 3926 5.725362 AGCTTAGCAAGATTTCTCGTAACT 58.275 37.500 7.07 0.00 0.00 2.24
3198 3927 6.166982 AGCTTAGCAAGATTTCTCGTAACTT 58.833 36.000 7.07 0.00 0.00 2.66
3199 3928 6.311690 AGCTTAGCAAGATTTCTCGTAACTTC 59.688 38.462 7.07 0.00 0.00 3.01
3200 3929 6.090898 GCTTAGCAAGATTTCTCGTAACTTCA 59.909 38.462 0.00 0.00 0.00 3.02
3201 3930 7.201565 GCTTAGCAAGATTTCTCGTAACTTCAT 60.202 37.037 0.00 0.00 0.00 2.57
3202 3931 6.654793 AGCAAGATTTCTCGTAACTTCATC 57.345 37.500 0.00 0.00 0.00 2.92
3203 3932 6.402222 AGCAAGATTTCTCGTAACTTCATCT 58.598 36.000 0.00 0.00 0.00 2.90
3204 3933 6.312426 AGCAAGATTTCTCGTAACTTCATCTG 59.688 38.462 0.00 0.00 0.00 2.90
3205 3934 6.456181 GCAAGATTTCTCGTAACTTCATCTGG 60.456 42.308 0.00 0.00 0.00 3.86
3206 3935 6.287589 AGATTTCTCGTAACTTCATCTGGT 57.712 37.500 0.00 0.00 0.00 4.00
3207 3936 6.102663 AGATTTCTCGTAACTTCATCTGGTG 58.897 40.000 0.00 0.00 0.00 4.17
3208 3937 3.232213 TCTCGTAACTTCATCTGGTGC 57.768 47.619 0.00 0.00 0.00 5.01
3209 3938 1.920574 CTCGTAACTTCATCTGGTGCG 59.079 52.381 0.00 0.00 0.00 5.34
3210 3939 0.999406 CGTAACTTCATCTGGTGCGG 59.001 55.000 0.00 0.00 0.00 5.69
3211 3940 1.671850 CGTAACTTCATCTGGTGCGGT 60.672 52.381 0.00 0.00 0.00 5.68
3212 3941 1.732259 GTAACTTCATCTGGTGCGGTG 59.268 52.381 0.00 0.00 0.00 4.94
3213 3942 0.396435 AACTTCATCTGGTGCGGTGA 59.604 50.000 0.00 0.00 0.00 4.02
3214 3943 0.320771 ACTTCATCTGGTGCGGTGAC 60.321 55.000 0.00 0.00 0.00 3.67
3215 3944 0.320683 CTTCATCTGGTGCGGTGACA 60.321 55.000 0.00 0.00 0.00 3.58
3216 3945 0.107643 TTCATCTGGTGCGGTGACAA 59.892 50.000 0.00 0.00 0.00 3.18
3217 3946 0.324614 TCATCTGGTGCGGTGACAAT 59.675 50.000 0.00 0.00 0.00 2.71
3218 3947 1.167851 CATCTGGTGCGGTGACAATT 58.832 50.000 0.00 0.00 0.00 2.32
3219 3948 1.541147 CATCTGGTGCGGTGACAATTT 59.459 47.619 0.00 0.00 0.00 1.82
3220 3949 1.234821 TCTGGTGCGGTGACAATTTC 58.765 50.000 0.00 0.00 0.00 2.17
3221 3950 0.950836 CTGGTGCGGTGACAATTTCA 59.049 50.000 0.00 0.00 0.00 2.69
3222 3951 1.336440 CTGGTGCGGTGACAATTTCAA 59.664 47.619 0.00 0.00 35.39 2.69
3223 3952 1.751351 TGGTGCGGTGACAATTTCAAA 59.249 42.857 0.00 0.00 35.39 2.69
3224 3953 2.166459 TGGTGCGGTGACAATTTCAAAA 59.834 40.909 0.00 0.00 35.39 2.44
3225 3954 3.190874 GGTGCGGTGACAATTTCAAAAA 58.809 40.909 0.00 0.00 35.39 1.94
3226 3955 3.807071 GGTGCGGTGACAATTTCAAAAAT 59.193 39.130 0.00 0.00 35.39 1.82
3227 3956 4.318689 GGTGCGGTGACAATTTCAAAAATG 60.319 41.667 0.00 0.00 35.39 2.32
3228 3957 3.247173 TGCGGTGACAATTTCAAAAATGC 59.753 39.130 0.00 0.00 35.39 3.56
3229 3958 3.661419 GCGGTGACAATTTCAAAAATGCG 60.661 43.478 0.00 0.00 35.39 4.73
3230 3959 3.733224 CGGTGACAATTTCAAAAATGCGA 59.267 39.130 0.00 0.00 35.39 5.10
3231 3960 4.374906 CGGTGACAATTTCAAAAATGCGAC 60.375 41.667 0.00 0.00 35.39 5.19
3232 3961 4.744631 GGTGACAATTTCAAAAATGCGACT 59.255 37.500 0.00 0.00 35.39 4.18
3233 3962 5.332506 GGTGACAATTTCAAAAATGCGACTG 60.333 40.000 0.00 0.00 35.39 3.51
3234 3963 4.744137 TGACAATTTCAAAAATGCGACTGG 59.256 37.500 0.00 0.00 0.00 4.00
3235 3964 4.057432 ACAATTTCAAAAATGCGACTGGG 58.943 39.130 0.00 0.00 0.00 4.45
3236 3965 2.810439 TTTCAAAAATGCGACTGGGG 57.190 45.000 0.00 0.00 0.00 4.96
3237 3966 0.965439 TTCAAAAATGCGACTGGGGG 59.035 50.000 0.00 0.00 0.00 5.40
3238 3967 1.079888 CAAAAATGCGACTGGGGGC 60.080 57.895 0.00 0.00 0.00 5.80
3239 3968 2.282783 AAAAATGCGACTGGGGGCC 61.283 57.895 0.00 0.00 0.00 5.80
3240 3969 3.521765 AAAATGCGACTGGGGGCCA 62.522 57.895 4.39 0.00 0.00 5.36
3241 3970 4.740822 AATGCGACTGGGGGCCAC 62.741 66.667 4.39 0.17 0.00 5.01
3255 3984 2.693267 GGCCACTCCCTAGTAAACTG 57.307 55.000 0.00 0.00 33.48 3.16
3256 3985 1.209747 GGCCACTCCCTAGTAAACTGG 59.790 57.143 0.00 0.00 33.48 4.00
3257 3986 2.185387 GCCACTCCCTAGTAAACTGGA 58.815 52.381 0.00 0.00 33.48 3.86
3258 3987 2.570302 GCCACTCCCTAGTAAACTGGAA 59.430 50.000 0.00 0.00 33.48 3.53
3259 3988 3.369576 GCCACTCCCTAGTAAACTGGAAG 60.370 52.174 0.00 0.00 35.11 3.46
3260 3989 4.094476 CCACTCCCTAGTAAACTGGAAGA 58.906 47.826 0.00 0.00 33.57 2.87
3261 3990 4.081586 CCACTCCCTAGTAAACTGGAAGAC 60.082 50.000 0.00 0.00 33.57 3.01
3262 3991 3.762823 ACTCCCTAGTAAACTGGAAGACG 59.237 47.826 0.00 0.00 33.24 4.18
3263 3992 4.015084 CTCCCTAGTAAACTGGAAGACGA 58.985 47.826 0.00 0.00 37.43 4.20
3264 3993 4.607239 TCCCTAGTAAACTGGAAGACGAT 58.393 43.478 0.00 0.00 37.43 3.73
3265 3994 4.401519 TCCCTAGTAAACTGGAAGACGATG 59.598 45.833 0.00 0.00 37.43 3.84
3266 3995 4.159879 CCCTAGTAAACTGGAAGACGATGT 59.840 45.833 0.00 0.00 37.43 3.06
3267 3996 5.103000 CCTAGTAAACTGGAAGACGATGTG 58.897 45.833 0.00 0.00 37.43 3.21
3268 3997 3.326747 AGTAAACTGGAAGACGATGTGC 58.673 45.455 0.00 0.00 37.43 4.57
3269 3998 2.254546 AAACTGGAAGACGATGTGCA 57.745 45.000 0.00 0.00 37.43 4.57
3270 3999 1.800805 AACTGGAAGACGATGTGCAG 58.199 50.000 0.00 0.00 38.97 4.41
3271 4000 0.036952 ACTGGAAGACGATGTGCAGG 60.037 55.000 9.39 0.00 37.50 4.85
3272 4001 1.364626 CTGGAAGACGATGTGCAGGC 61.365 60.000 0.00 0.00 34.07 4.85
3273 4002 2.109126 GGAAGACGATGTGCAGGCC 61.109 63.158 0.00 0.00 0.00 5.19
3274 4003 1.078848 GAAGACGATGTGCAGGCCT 60.079 57.895 0.00 0.00 0.00 5.19
3275 4004 0.175760 GAAGACGATGTGCAGGCCTA 59.824 55.000 3.98 0.00 0.00 3.93
3276 4005 0.613260 AAGACGATGTGCAGGCCTAA 59.387 50.000 3.98 0.00 0.00 2.69
3277 4006 0.176680 AGACGATGTGCAGGCCTAAG 59.823 55.000 3.98 0.00 0.00 2.18
3278 4007 0.811616 GACGATGTGCAGGCCTAAGG 60.812 60.000 3.98 0.00 0.00 2.69
3288 4017 4.129148 GCCTAAGGCCCTGGGTGG 62.129 72.222 15.56 10.05 44.06 4.61
3298 4027 3.866582 CTGGGTGGGCTCGGGATC 61.867 72.222 0.00 0.00 0.00 3.36
3299 4028 4.731853 TGGGTGGGCTCGGGATCA 62.732 66.667 0.00 0.00 0.00 2.92
3300 4029 4.176752 GGGTGGGCTCGGGATCAC 62.177 72.222 0.00 0.00 0.00 3.06
3301 4030 4.530857 GGTGGGCTCGGGATCACG 62.531 72.222 12.22 12.22 0.00 4.35
3302 4031 4.530857 GTGGGCTCGGGATCACGG 62.531 72.222 18.99 9.53 0.00 4.94
3303 4032 4.770362 TGGGCTCGGGATCACGGA 62.770 66.667 18.99 3.31 0.00 4.69
3304 4033 4.222847 GGGCTCGGGATCACGGAC 62.223 72.222 18.99 10.45 0.00 4.79
3305 4034 4.222847 GGCTCGGGATCACGGACC 62.223 72.222 18.99 15.45 0.00 4.46
3306 4035 3.148279 GCTCGGGATCACGGACCT 61.148 66.667 18.99 0.00 0.00 3.85
3307 4036 2.722201 GCTCGGGATCACGGACCTT 61.722 63.158 18.99 0.00 0.00 3.50
3308 4037 1.141881 CTCGGGATCACGGACCTTG 59.858 63.158 18.99 0.00 0.00 3.61
3309 4038 1.304630 TCGGGATCACGGACCTTGA 60.305 57.895 18.99 2.71 0.00 3.02
3310 4039 0.901114 TCGGGATCACGGACCTTGAA 60.901 55.000 18.99 0.00 0.00 2.69
3311 4040 0.036765 CGGGATCACGGACCTTGAAA 60.037 55.000 10.23 0.00 0.00 2.69
3312 4041 1.739067 GGGATCACGGACCTTGAAAG 58.261 55.000 4.56 0.00 0.00 2.62
3325 4054 3.756117 CCTTGAAAGGTTTGGTAGAGCT 58.244 45.455 0.57 0.00 41.41 4.09
3326 4055 3.753797 CCTTGAAAGGTTTGGTAGAGCTC 59.246 47.826 5.27 5.27 41.41 4.09
3327 4056 4.505742 CCTTGAAAGGTTTGGTAGAGCTCT 60.506 45.833 22.17 22.17 41.41 4.09
3328 4057 4.273148 TGAAAGGTTTGGTAGAGCTCTC 57.727 45.455 22.17 11.89 0.00 3.20
3329 4058 3.008049 TGAAAGGTTTGGTAGAGCTCTCC 59.992 47.826 22.17 20.52 0.00 3.71
3330 4059 1.187087 AGGTTTGGTAGAGCTCTCCG 58.813 55.000 22.17 0.00 0.00 4.63
3331 4060 0.896226 GGTTTGGTAGAGCTCTCCGT 59.104 55.000 22.17 0.00 0.00 4.69
3332 4061 1.135053 GGTTTGGTAGAGCTCTCCGTC 60.135 57.143 22.17 13.80 0.00 4.79
3333 4062 1.819903 GTTTGGTAGAGCTCTCCGTCT 59.180 52.381 22.17 0.00 0.00 4.18
3334 4063 1.464734 TTGGTAGAGCTCTCCGTCTG 58.535 55.000 22.17 0.00 0.00 3.51
3335 4064 1.032657 TGGTAGAGCTCTCCGTCTGC 61.033 60.000 22.17 0.00 0.00 4.26
3336 4065 1.353804 GTAGAGCTCTCCGTCTGCG 59.646 63.158 22.17 0.00 37.95 5.18
3337 4066 1.078356 TAGAGCTCTCCGTCTGCGT 60.078 57.895 22.17 0.00 36.15 5.24
3338 4067 0.677098 TAGAGCTCTCCGTCTGCGTT 60.677 55.000 22.17 0.00 36.15 4.84
3339 4068 1.803519 GAGCTCTCCGTCTGCGTTG 60.804 63.158 6.43 0.00 36.15 4.10
3340 4069 2.811317 GCTCTCCGTCTGCGTTGG 60.811 66.667 0.00 0.00 36.15 3.77
3341 4070 2.811317 CTCTCCGTCTGCGTTGGC 60.811 66.667 0.00 0.00 40.52 4.52
3342 4071 4.373116 TCTCCGTCTGCGTTGGCC 62.373 66.667 0.00 0.00 38.85 5.36
3352 4081 3.136123 CGTTGGCCCTGGCTCATG 61.136 66.667 8.29 0.00 41.60 3.07
3353 4082 2.036256 GTTGGCCCTGGCTCATGT 59.964 61.111 8.29 0.00 41.60 3.21
3354 4083 2.036098 TTGGCCCTGGCTCATGTG 59.964 61.111 8.29 0.00 41.60 3.21
3355 4084 3.588817 TTGGCCCTGGCTCATGTGG 62.589 63.158 8.29 0.00 41.60 4.17
3356 4085 3.731728 GGCCCTGGCTCATGTGGA 61.732 66.667 8.29 0.00 41.60 4.02
3357 4086 2.439156 GCCCTGGCTCATGTGGAC 60.439 66.667 0.00 0.00 38.26 4.02
3358 4087 2.273449 CCCTGGCTCATGTGGACC 59.727 66.667 0.00 0.00 0.00 4.46
3359 4088 2.124983 CCTGGCTCATGTGGACCG 60.125 66.667 0.00 0.00 0.00 4.79
3360 4089 2.659063 CCTGGCTCATGTGGACCGA 61.659 63.158 0.00 0.00 0.00 4.69
3361 4090 1.448540 CTGGCTCATGTGGACCGAC 60.449 63.158 0.00 0.00 0.00 4.79
3362 4091 2.125106 GGCTCATGTGGACCGACC 60.125 66.667 0.00 0.00 39.54 4.79
3363 4092 2.125106 GCTCATGTGGACCGACCC 60.125 66.667 0.00 0.00 38.00 4.46
3364 4093 2.660064 GCTCATGTGGACCGACCCT 61.660 63.158 0.00 0.00 38.00 4.34
3365 4094 1.219124 CTCATGTGGACCGACCCTG 59.781 63.158 0.00 0.00 38.00 4.45
3366 4095 1.229051 TCATGTGGACCGACCCTGA 60.229 57.895 0.00 0.00 38.00 3.86
3367 4096 1.079127 CATGTGGACCGACCCTGAC 60.079 63.158 0.00 0.00 38.00 3.51
3368 4097 2.291043 ATGTGGACCGACCCTGACC 61.291 63.158 0.00 0.00 38.00 4.02
3369 4098 4.065281 GTGGACCGACCCTGACCG 62.065 72.222 0.00 0.00 38.00 4.79
3375 4104 4.742201 CGACCCTGACCGGCAGTG 62.742 72.222 19.93 13.71 43.33 3.66
3376 4105 4.394712 GACCCTGACCGGCAGTGG 62.395 72.222 19.93 20.44 43.33 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 125 5.624344 TGCAGTAACAGAGACTAGTACAC 57.376 43.478 0.00 0.00 0.00 2.90
125 126 5.064834 CGATGCAGTAACAGAGACTAGTACA 59.935 44.000 0.00 0.00 0.00 2.90
131 132 1.134965 GCCGATGCAGTAACAGAGACT 60.135 52.381 0.00 0.00 37.47 3.24
304 327 5.221283 TGTCGCGTGGGATTATCAGTAATAA 60.221 40.000 5.77 0.00 34.37 1.40
305 328 4.278919 TGTCGCGTGGGATTATCAGTAATA 59.721 41.667 5.77 0.00 30.75 0.98
306 329 3.069016 TGTCGCGTGGGATTATCAGTAAT 59.931 43.478 5.77 0.00 33.26 1.89
360 383 2.288961 TCCGTACTTGAGGAAATCGC 57.711 50.000 0.00 0.00 32.86 4.58
369 392 2.163815 GCTAGAGCAGTTCCGTACTTGA 59.836 50.000 0.00 0.00 41.59 3.02
388 411 3.302347 CTTTCACTCTCGGCCGGCT 62.302 63.158 28.56 0.85 0.00 5.52
440 467 1.746615 CCGTTCCATCTGCAGGGTG 60.747 63.158 15.13 13.02 0.00 4.61
442 469 0.758734 TATCCGTTCCATCTGCAGGG 59.241 55.000 15.13 8.39 0.00 4.45
443 470 2.037641 TGATATCCGTTCCATCTGCAGG 59.962 50.000 15.13 0.00 0.00 4.85
444 471 3.324117 CTGATATCCGTTCCATCTGCAG 58.676 50.000 7.63 7.63 0.00 4.41
445 472 2.548707 GCTGATATCCGTTCCATCTGCA 60.549 50.000 0.00 0.00 40.97 4.41
446 473 2.072298 GCTGATATCCGTTCCATCTGC 58.928 52.381 0.00 0.00 36.78 4.26
448 475 2.968574 ACTGCTGATATCCGTTCCATCT 59.031 45.455 0.00 0.00 0.00 2.90
449 476 3.062763 CACTGCTGATATCCGTTCCATC 58.937 50.000 0.00 0.00 0.00 3.51
450 477 2.435805 ACACTGCTGATATCCGTTCCAT 59.564 45.455 0.00 0.00 0.00 3.41
451 478 1.831106 ACACTGCTGATATCCGTTCCA 59.169 47.619 0.00 0.00 0.00 3.53
452 479 2.159099 TGACACTGCTGATATCCGTTCC 60.159 50.000 0.00 0.00 0.00 3.62
471 498 1.561076 CATCCTCCTGTGTTCCCATGA 59.439 52.381 0.00 0.00 0.00 3.07
479 506 0.687354 GGTGTGACATCCTCCTGTGT 59.313 55.000 0.00 0.00 0.00 3.72
497 529 2.033049 GCATAGCAACAGCATCTCTTGG 59.967 50.000 0.00 0.00 0.00 3.61
500 532 1.809271 CGGCATAGCAACAGCATCTCT 60.809 52.381 0.00 0.00 0.00 3.10
509 541 3.527360 GATGGCGCGGCATAGCAAC 62.527 63.158 42.69 28.01 36.85 4.17
534 566 2.203280 CCAACGAGGCACCCACAA 60.203 61.111 0.00 0.00 0.00 3.33
553 585 1.368950 ATCGGCGTGATGGATCCAG 59.631 57.895 21.33 7.50 35.45 3.86
577 609 2.434185 GGGCGTCGCTCACATCAA 60.434 61.111 18.11 0.00 0.00 2.57
704 746 6.260050 TCGTTGGAAAGAACAGGATATAATGC 59.740 38.462 0.00 0.00 0.00 3.56
959 1019 1.640670 AGAGGCTGAGAGAGAGGAAGT 59.359 52.381 0.00 0.00 0.00 3.01
963 1023 1.477558 GGAGAGAGGCTGAGAGAGAGG 60.478 61.905 0.00 0.00 0.00 3.69
973 1035 1.382420 ATCTTGGCGGAGAGAGGCT 60.382 57.895 0.00 0.00 35.01 4.58
983 1061 0.027194 CATTGAGCACGATCTTGGCG 59.973 55.000 0.92 0.00 0.00 5.69
987 1065 3.556817 TGCCATTGAGCACGATCTT 57.443 47.368 0.00 0.00 38.00 2.40
997 1098 0.179048 CCTACCGCTGATGCCATTGA 60.179 55.000 0.00 0.00 35.36 2.57
1291 1404 2.136298 TGAAGCTGAAACCACCAACA 57.864 45.000 0.00 0.00 0.00 3.33
1306 1419 7.877097 AGAGGCTAGCTGTAATGAAATATGAAG 59.123 37.037 15.72 0.00 0.00 3.02
1307 1420 7.739825 AGAGGCTAGCTGTAATGAAATATGAA 58.260 34.615 15.72 0.00 0.00 2.57
1308 1421 7.308450 AGAGGCTAGCTGTAATGAAATATGA 57.692 36.000 15.72 0.00 0.00 2.15
1309 1422 7.976135 AAGAGGCTAGCTGTAATGAAATATG 57.024 36.000 15.72 0.00 0.00 1.78
1310 1423 8.986929 AAAAGAGGCTAGCTGTAATGAAATAT 57.013 30.769 15.72 0.00 0.00 1.28
1311 1424 8.677300 CAAAAAGAGGCTAGCTGTAATGAAATA 58.323 33.333 15.72 0.00 0.00 1.40
1312 1425 7.542025 CAAAAAGAGGCTAGCTGTAATGAAAT 58.458 34.615 15.72 0.00 0.00 2.17
1313 1426 6.570378 GCAAAAAGAGGCTAGCTGTAATGAAA 60.570 38.462 15.72 0.00 0.00 2.69
1314 1427 5.106157 GCAAAAAGAGGCTAGCTGTAATGAA 60.106 40.000 15.72 0.00 0.00 2.57
1333 1454 7.517101 CGCAAAATTTTCAGAGATTCAGCAAAA 60.517 33.333 0.00 0.00 0.00 2.44
1529 1658 1.381872 CTGGTCCCTCATCTCCCGT 60.382 63.158 0.00 0.00 0.00 5.28
1718 1847 0.526662 CGTAGAACAGCCCGTCTCTT 59.473 55.000 0.00 0.00 0.00 2.85
1729 1858 1.080772 CCTGTCAGCGCGTAGAACA 60.081 57.895 8.43 6.77 0.00 3.18
1854 1983 2.017559 GCCATCGAGCTCGTAGGGTT 62.018 60.000 33.81 15.95 40.80 4.11
1859 1988 2.827190 ACGGCCATCGAGCTCGTA 60.827 61.111 33.33 21.14 42.43 3.43
1860 1989 4.498520 CACGGCCATCGAGCTCGT 62.499 66.667 33.33 19.17 42.43 4.18
1868 1997 3.272334 GCGACATCCACGGCCATC 61.272 66.667 2.24 0.00 0.00 3.51
2033 2169 6.542005 TGCACTCAGAAGAACACAAATAGAAA 59.458 34.615 0.00 0.00 0.00 2.52
2036 2172 5.468072 ACTGCACTCAGAAGAACACAAATAG 59.532 40.000 0.00 0.00 42.95 1.73
2037 2173 5.368145 ACTGCACTCAGAAGAACACAAATA 58.632 37.500 0.00 0.00 42.95 1.40
2038 2174 4.202441 ACTGCACTCAGAAGAACACAAAT 58.798 39.130 0.00 0.00 42.95 2.32
2048 2184 1.170290 TCCGACGACTGCACTCAGAA 61.170 55.000 0.00 0.00 42.95 3.02
2116 2255 2.202810 GCACTGTAGCCGCCTCTC 60.203 66.667 0.00 0.00 0.00 3.20
2140 2279 1.415659 CCATCCTCTGAATCTCGCCTT 59.584 52.381 0.00 0.00 0.00 4.35
2141 2280 1.047002 CCATCCTCTGAATCTCGCCT 58.953 55.000 0.00 0.00 0.00 5.52
2158 2297 1.000771 CTCCTCCTCCTCGTGTCCA 60.001 63.158 0.00 0.00 0.00 4.02
2200 2351 3.073735 CGCCTCTCCAGCTCCACT 61.074 66.667 0.00 0.00 0.00 4.00
2279 2430 4.803426 CTTTCTCTCCGCGCGCCT 62.803 66.667 27.36 0.00 0.00 5.52
2293 2444 3.201708 CCATCTCCTTCTCCATGACCTTT 59.798 47.826 0.00 0.00 0.00 3.11
2299 2450 1.072015 GCCTCCATCTCCTTCTCCATG 59.928 57.143 0.00 0.00 0.00 3.66
2464 2629 2.566570 TACAGAGCACGTTCGGGCA 61.567 57.895 21.06 0.00 0.00 5.36
2528 2694 1.485480 ACATCATCAGCCAGGAGTCAG 59.515 52.381 0.00 0.00 0.00 3.51
2597 2768 6.733721 GCACTTAGCTGAACTAAACAAAAC 57.266 37.500 0.00 0.00 40.36 2.43
2654 2826 8.146479 GTGATACACATTATGTCACATCACAT 57.854 34.615 23.86 0.00 45.83 3.21
2655 2827 7.538303 GTGATACACATTATGTCACATCACA 57.462 36.000 23.86 8.00 45.83 3.58
2656 2828 7.254556 CCAGTGATACACATTATGTCACATCAC 60.255 40.741 22.59 22.59 46.37 3.06
2657 2829 6.762661 CCAGTGATACACATTATGTCACATCA 59.237 38.462 14.41 11.26 42.09 3.07
2658 2830 6.986231 TCCAGTGATACACATTATGTCACATC 59.014 38.462 14.41 9.36 42.09 3.06
2692 3390 5.979517 GCATGATAATAAGACTTGCAAACCC 59.020 40.000 0.00 0.00 35.68 4.11
2722 3426 6.619744 CATAACATGTTGTGGCATGACTAAA 58.380 36.000 23.44 0.00 46.65 1.85
2745 3449 3.635836 TGACAATGAACCAAACATCTGCA 59.364 39.130 0.00 0.00 0.00 4.41
2770 3474 1.101049 AAAGTCTGGCAACCCACGTG 61.101 55.000 9.08 9.08 35.79 4.49
2771 3475 0.395173 AAAAGTCTGGCAACCCACGT 60.395 50.000 0.00 0.00 35.79 4.49
2772 3476 0.030638 CAAAAGTCTGGCAACCCACG 59.969 55.000 0.00 0.00 35.79 4.94
2778 3482 2.356665 TGGCTACAAAAGTCTGGCAA 57.643 45.000 0.00 0.00 0.00 4.52
2782 3486 5.431765 AGACCATATGGCTACAAAAGTCTG 58.568 41.667 22.18 0.00 39.32 3.51
2839 3543 7.093640 ACTGACAAAATGACCATCATAAATGCT 60.094 33.333 0.00 0.00 35.76 3.79
2840 3544 7.037438 ACTGACAAAATGACCATCATAAATGC 58.963 34.615 0.00 0.00 35.76 3.56
2862 3566 1.000060 CTGCCACCCAAAATGTGACTG 60.000 52.381 0.00 0.00 35.74 3.51
2863 3567 1.331214 CTGCCACCCAAAATGTGACT 58.669 50.000 0.00 0.00 35.74 3.41
2885 3589 1.601166 ACAAACCTTAGTCAACCCGC 58.399 50.000 0.00 0.00 0.00 6.13
2889 3593 3.129638 TGCCACAACAAACCTTAGTCAAC 59.870 43.478 0.00 0.00 0.00 3.18
2893 3597 3.626930 TCTTGCCACAACAAACCTTAGT 58.373 40.909 0.00 0.00 0.00 2.24
2903 3607 2.749621 CTGGGACTAATCTTGCCACAAC 59.250 50.000 0.00 0.00 0.00 3.32
2904 3608 2.375174 ACTGGGACTAATCTTGCCACAA 59.625 45.455 0.00 0.00 0.00 3.33
2906 3610 2.749621 CAACTGGGACTAATCTTGCCAC 59.250 50.000 0.00 0.00 0.00 5.01
2907 3611 2.879756 GCAACTGGGACTAATCTTGCCA 60.880 50.000 0.00 0.00 30.04 4.92
2908 3612 1.745653 GCAACTGGGACTAATCTTGCC 59.254 52.381 0.00 0.00 30.04 4.52
2910 3614 5.431765 ACATAGCAACTGGGACTAATCTTG 58.568 41.667 0.00 0.00 0.00 3.02
2911 3615 5.700402 ACATAGCAACTGGGACTAATCTT 57.300 39.130 0.00 0.00 0.00 2.40
2960 3689 1.607801 CTCCTGTCCATGCACCTCGA 61.608 60.000 0.00 0.00 0.00 4.04
2961 3690 1.153489 CTCCTGTCCATGCACCTCG 60.153 63.158 0.00 0.00 0.00 4.63
2965 3694 0.035317 TGTGTCTCCTGTCCATGCAC 59.965 55.000 0.00 0.00 0.00 4.57
2966 3695 0.986527 ATGTGTCTCCTGTCCATGCA 59.013 50.000 0.00 0.00 0.00 3.96
2972 3701 4.305769 GAGATATGCATGTGTCTCCTGTC 58.694 47.826 19.69 0.00 32.83 3.51
3017 3746 8.687824 AGACATAAAAATTTGGTAATTGCGAG 57.312 30.769 0.00 0.00 34.27 5.03
3021 3750 9.810231 GCACAAGACATAAAAATTTGGTAATTG 57.190 29.630 0.00 1.26 34.27 2.32
3033 3762 5.123186 CCGGTAATCTGCACAAGACATAAAA 59.877 40.000 0.00 0.00 37.88 1.52
3034 3763 4.634004 CCGGTAATCTGCACAAGACATAAA 59.366 41.667 0.00 0.00 37.88 1.40
3035 3764 4.188462 CCGGTAATCTGCACAAGACATAA 58.812 43.478 0.00 0.00 37.88 1.90
3036 3765 3.431626 CCCGGTAATCTGCACAAGACATA 60.432 47.826 0.00 0.00 37.88 2.29
3037 3766 2.632377 CCGGTAATCTGCACAAGACAT 58.368 47.619 0.00 0.00 37.88 3.06
3038 3767 1.338674 CCCGGTAATCTGCACAAGACA 60.339 52.381 0.00 0.00 37.88 3.41
3039 3768 1.338769 ACCCGGTAATCTGCACAAGAC 60.339 52.381 0.00 0.00 37.88 3.01
3040 3769 0.981183 ACCCGGTAATCTGCACAAGA 59.019 50.000 0.00 0.00 39.94 3.02
3041 3770 1.086696 CACCCGGTAATCTGCACAAG 58.913 55.000 0.00 0.00 0.00 3.16
3042 3771 0.322098 CCACCCGGTAATCTGCACAA 60.322 55.000 0.00 0.00 0.00 3.33
3043 3772 1.195442 TCCACCCGGTAATCTGCACA 61.195 55.000 0.00 0.00 0.00 4.57
3044 3773 0.035820 TTCCACCCGGTAATCTGCAC 60.036 55.000 0.00 0.00 0.00 4.57
3045 3774 0.251916 CTTCCACCCGGTAATCTGCA 59.748 55.000 0.00 0.00 0.00 4.41
3046 3775 0.463833 CCTTCCACCCGGTAATCTGC 60.464 60.000 0.00 0.00 0.00 4.26
3047 3776 0.180406 CCCTTCCACCCGGTAATCTG 59.820 60.000 0.00 0.00 0.00 2.90
3048 3777 1.632965 GCCCTTCCACCCGGTAATCT 61.633 60.000 0.00 0.00 0.00 2.40
3049 3778 1.153025 GCCCTTCCACCCGGTAATC 60.153 63.158 0.00 0.00 0.00 1.75
3050 3779 1.502527 TTGCCCTTCCACCCGGTAAT 61.503 55.000 0.00 0.00 0.00 1.89
3051 3780 2.132089 CTTGCCCTTCCACCCGGTAA 62.132 60.000 0.00 0.00 0.00 2.85
3052 3781 2.529643 TTGCCCTTCCACCCGGTA 60.530 61.111 0.00 0.00 0.00 4.02
3053 3782 3.966543 CTTGCCCTTCCACCCGGT 61.967 66.667 0.00 0.00 0.00 5.28
3054 3783 3.204467 TTCTTGCCCTTCCACCCGG 62.204 63.158 0.00 0.00 0.00 5.73
3055 3784 1.971695 GTTCTTGCCCTTCCACCCG 60.972 63.158 0.00 0.00 0.00 5.28
3056 3785 0.178961 AAGTTCTTGCCCTTCCACCC 60.179 55.000 0.00 0.00 0.00 4.61
3057 3786 2.437413 CTAAGTTCTTGCCCTTCCACC 58.563 52.381 0.00 0.00 0.00 4.61
3058 3787 1.813178 GCTAAGTTCTTGCCCTTCCAC 59.187 52.381 0.00 0.00 0.00 4.02
3059 3788 1.423541 TGCTAAGTTCTTGCCCTTCCA 59.576 47.619 0.00 0.00 0.00 3.53
3060 3789 2.200373 TGCTAAGTTCTTGCCCTTCC 57.800 50.000 0.00 0.00 0.00 3.46
3061 3790 2.424956 CCATGCTAAGTTCTTGCCCTTC 59.575 50.000 0.00 0.00 0.00 3.46
3062 3791 2.450476 CCATGCTAAGTTCTTGCCCTT 58.550 47.619 0.00 0.00 0.00 3.95
3063 3792 1.957113 GCCATGCTAAGTTCTTGCCCT 60.957 52.381 0.00 0.00 0.00 5.19
3064 3793 0.457443 GCCATGCTAAGTTCTTGCCC 59.543 55.000 0.00 0.00 0.00 5.36
3065 3794 0.457443 GGCCATGCTAAGTTCTTGCC 59.543 55.000 0.00 0.00 0.00 4.52
3066 3795 0.099436 CGGCCATGCTAAGTTCTTGC 59.901 55.000 2.24 0.00 0.00 4.01
3067 3796 0.734889 CCGGCCATGCTAAGTTCTTG 59.265 55.000 2.24 0.00 0.00 3.02
3068 3797 0.394352 CCCGGCCATGCTAAGTTCTT 60.394 55.000 2.24 0.00 0.00 2.52
3069 3798 1.224592 CCCGGCCATGCTAAGTTCT 59.775 57.895 2.24 0.00 0.00 3.01
3070 3799 0.393808 TTCCCGGCCATGCTAAGTTC 60.394 55.000 2.24 0.00 0.00 3.01
3071 3800 0.394352 CTTCCCGGCCATGCTAAGTT 60.394 55.000 2.24 0.00 0.00 2.66
3072 3801 1.224592 CTTCCCGGCCATGCTAAGT 59.775 57.895 2.24 0.00 0.00 2.24
3073 3802 1.526917 CCTTCCCGGCCATGCTAAG 60.527 63.158 2.24 0.00 0.00 2.18
3074 3803 2.595095 CCTTCCCGGCCATGCTAA 59.405 61.111 2.24 0.00 0.00 3.09
3075 3804 3.488569 CCCTTCCCGGCCATGCTA 61.489 66.667 2.24 0.00 0.00 3.49
3078 3807 3.406595 GAGACCCTTCCCGGCCATG 62.407 68.421 2.24 0.00 0.00 3.66
3079 3808 3.090532 GAGACCCTTCCCGGCCAT 61.091 66.667 2.24 0.00 0.00 4.40
3090 3819 1.079057 GACTTCGCCAAGGAGACCC 60.079 63.158 0.00 0.00 33.37 4.46
3091 3820 0.390472 CAGACTTCGCCAAGGAGACC 60.390 60.000 0.00 0.00 33.37 3.85
3092 3821 0.318762 ACAGACTTCGCCAAGGAGAC 59.681 55.000 0.00 0.00 33.37 3.36
3093 3822 0.603569 GACAGACTTCGCCAAGGAGA 59.396 55.000 0.00 0.00 33.37 3.71
3094 3823 0.605589 AGACAGACTTCGCCAAGGAG 59.394 55.000 0.00 0.00 33.37 3.69
3095 3824 1.048601 AAGACAGACTTCGCCAAGGA 58.951 50.000 0.00 0.00 32.91 3.36
3096 3825 1.151668 CAAGACAGACTTCGCCAAGG 58.848 55.000 0.00 0.00 36.61 3.61
3097 3826 1.528586 CACAAGACAGACTTCGCCAAG 59.471 52.381 0.00 0.00 36.61 3.61
3098 3827 1.581934 CACAAGACAGACTTCGCCAA 58.418 50.000 0.00 0.00 36.61 4.52
3099 3828 0.880278 GCACAAGACAGACTTCGCCA 60.880 55.000 0.00 0.00 36.61 5.69
3100 3829 1.862806 GCACAAGACAGACTTCGCC 59.137 57.895 0.00 0.00 36.61 5.54
3101 3830 1.488957 CGCACAAGACAGACTTCGC 59.511 57.895 0.00 0.00 36.61 4.70
3102 3831 0.941463 AGCGCACAAGACAGACTTCG 60.941 55.000 11.47 0.00 36.61 3.79
3103 3832 2.065993 TAGCGCACAAGACAGACTTC 57.934 50.000 11.47 0.00 36.61 3.01
3104 3833 2.738846 CAATAGCGCACAAGACAGACTT 59.261 45.455 11.47 0.00 39.70 3.01
3105 3834 2.341257 CAATAGCGCACAAGACAGACT 58.659 47.619 11.47 0.00 0.00 3.24
3106 3835 1.201965 GCAATAGCGCACAAGACAGAC 60.202 52.381 11.47 0.00 0.00 3.51
3107 3836 1.078709 GCAATAGCGCACAAGACAGA 58.921 50.000 11.47 0.00 0.00 3.41
3108 3837 0.097674 GGCAATAGCGCACAAGACAG 59.902 55.000 11.47 0.00 43.41 3.51
3109 3838 0.605050 TGGCAATAGCGCACAAGACA 60.605 50.000 11.47 1.46 43.41 3.41
3110 3839 0.179189 GTGGCAATAGCGCACAAGAC 60.179 55.000 11.47 0.00 43.41 3.01
3111 3840 1.305219 GGTGGCAATAGCGCACAAGA 61.305 55.000 11.47 0.00 41.06 3.02
3112 3841 1.137404 GGTGGCAATAGCGCACAAG 59.863 57.895 11.47 0.00 41.06 3.16
3113 3842 2.339556 GGGTGGCAATAGCGCACAA 61.340 57.895 11.47 0.00 41.06 3.33
3114 3843 2.749839 GGGTGGCAATAGCGCACA 60.750 61.111 11.47 0.00 41.06 4.57
3115 3844 2.749839 TGGGTGGCAATAGCGCAC 60.750 61.111 11.47 0.00 43.41 5.34
3116 3845 2.749839 GTGGGTGGCAATAGCGCA 60.750 61.111 11.47 0.00 43.41 6.09
3117 3846 3.518068 GGTGGGTGGCAATAGCGC 61.518 66.667 0.00 0.00 43.41 5.92
3118 3847 2.045438 TGGTGGGTGGCAATAGCG 60.045 61.111 0.00 0.00 43.41 4.26
3119 3848 2.052104 GGTGGTGGGTGGCAATAGC 61.052 63.158 0.00 0.00 41.10 2.97
3120 3849 0.394352 GAGGTGGTGGGTGGCAATAG 60.394 60.000 0.00 0.00 0.00 1.73
3121 3850 1.136961 TGAGGTGGTGGGTGGCAATA 61.137 55.000 0.00 0.00 0.00 1.90
3122 3851 2.440599 GAGGTGGTGGGTGGCAAT 59.559 61.111 0.00 0.00 0.00 3.56
3123 3852 3.099841 TGAGGTGGTGGGTGGCAA 61.100 61.111 0.00 0.00 0.00 4.52
3124 3853 3.884774 GTGAGGTGGTGGGTGGCA 61.885 66.667 0.00 0.00 0.00 4.92
3125 3854 3.570212 AGTGAGGTGGTGGGTGGC 61.570 66.667 0.00 0.00 0.00 5.01
3126 3855 2.431683 CAGTGAGGTGGTGGGTGG 59.568 66.667 0.00 0.00 0.00 4.61
3127 3856 2.281761 GCAGTGAGGTGGTGGGTG 60.282 66.667 0.00 0.00 0.00 4.61
3128 3857 3.941188 CGCAGTGAGGTGGTGGGT 61.941 66.667 0.00 0.00 0.00 4.51
3130 3859 4.320456 AGCGCAGTGAGGTGGTGG 62.320 66.667 11.47 0.00 0.00 4.61
3131 3860 2.740055 GAGCGCAGTGAGGTGGTG 60.740 66.667 11.47 0.00 0.00 4.17
3132 3861 4.008933 GGAGCGCAGTGAGGTGGT 62.009 66.667 11.47 0.00 0.00 4.16
3133 3862 4.767255 GGGAGCGCAGTGAGGTGG 62.767 72.222 11.47 0.00 0.00 4.61
3134 3863 4.767255 GGGGAGCGCAGTGAGGTG 62.767 72.222 11.47 0.00 0.00 4.00
3137 3866 3.672295 GAAGGGGGAGCGCAGTGAG 62.672 68.421 11.47 0.00 0.00 3.51
3138 3867 3.706373 GAAGGGGGAGCGCAGTGA 61.706 66.667 11.47 0.00 0.00 3.41
3139 3868 4.785453 GGAAGGGGGAGCGCAGTG 62.785 72.222 11.47 0.00 0.00 3.66
3152 3881 1.250154 TGATTTGCCCAAGCCGGAAG 61.250 55.000 5.05 0.00 38.69 3.46
3153 3882 1.228706 TGATTTGCCCAAGCCGGAA 60.229 52.632 5.05 0.00 38.69 4.30
3154 3883 1.976474 GTGATTTGCCCAAGCCGGA 60.976 57.895 5.05 0.00 38.69 5.14
3155 3884 1.814772 TTGTGATTTGCCCAAGCCGG 61.815 55.000 0.00 0.00 38.69 6.13
3156 3885 0.388907 CTTGTGATTTGCCCAAGCCG 60.389 55.000 0.00 0.00 38.69 5.52
3157 3886 3.520187 CTTGTGATTTGCCCAAGCC 57.480 52.632 0.00 0.00 38.69 4.35
3159 3888 2.825861 AAGCTTGTGATTTGCCCAAG 57.174 45.000 0.00 0.00 38.83 3.61
3160 3889 2.029110 GCTAAGCTTGTGATTTGCCCAA 60.029 45.455 9.86 0.00 35.07 4.12
3161 3890 1.545582 GCTAAGCTTGTGATTTGCCCA 59.454 47.619 9.86 0.00 35.07 5.36
3162 3891 1.545582 TGCTAAGCTTGTGATTTGCCC 59.454 47.619 9.86 0.00 38.99 5.36
3163 3892 3.057315 TCTTGCTAAGCTTGTGATTTGCC 60.057 43.478 9.86 0.00 38.99 4.52
3164 3893 4.164822 TCTTGCTAAGCTTGTGATTTGC 57.835 40.909 9.86 2.82 39.86 3.68
3165 3894 7.088905 AGAAATCTTGCTAAGCTTGTGATTTG 58.911 34.615 20.59 5.19 34.25 2.32
3166 3895 7.224522 AGAAATCTTGCTAAGCTTGTGATTT 57.775 32.000 9.86 15.44 36.00 2.17
3167 3896 6.402983 CGAGAAATCTTGCTAAGCTTGTGATT 60.403 38.462 9.86 8.47 0.00 2.57
3168 3897 5.064452 CGAGAAATCTTGCTAAGCTTGTGAT 59.936 40.000 9.86 2.76 0.00 3.06
3169 3898 4.389992 CGAGAAATCTTGCTAAGCTTGTGA 59.610 41.667 9.86 0.34 0.00 3.58
3170 3899 4.153117 ACGAGAAATCTTGCTAAGCTTGTG 59.847 41.667 9.86 2.92 0.00 3.33
3171 3900 4.319177 ACGAGAAATCTTGCTAAGCTTGT 58.681 39.130 9.86 0.00 0.00 3.16
3172 3901 4.935885 ACGAGAAATCTTGCTAAGCTTG 57.064 40.909 9.86 0.01 0.00 4.01
3173 3902 6.166982 AGTTACGAGAAATCTTGCTAAGCTT 58.833 36.000 3.48 3.48 0.00 3.74
3174 3903 5.725362 AGTTACGAGAAATCTTGCTAAGCT 58.275 37.500 0.00 0.00 0.00 3.74
3175 3904 6.090898 TGAAGTTACGAGAAATCTTGCTAAGC 59.909 38.462 0.00 0.00 0.00 3.09
3176 3905 7.582435 TGAAGTTACGAGAAATCTTGCTAAG 57.418 36.000 0.00 0.00 0.00 2.18
3177 3906 8.035394 AGATGAAGTTACGAGAAATCTTGCTAA 58.965 33.333 0.00 0.00 0.00 3.09
3178 3907 7.489435 CAGATGAAGTTACGAGAAATCTTGCTA 59.511 37.037 0.00 0.00 0.00 3.49
3179 3908 6.312426 CAGATGAAGTTACGAGAAATCTTGCT 59.688 38.462 0.00 0.00 0.00 3.91
3180 3909 6.456181 CCAGATGAAGTTACGAGAAATCTTGC 60.456 42.308 0.00 0.00 0.00 4.01
3181 3910 6.591834 ACCAGATGAAGTTACGAGAAATCTTG 59.408 38.462 0.00 0.00 0.00 3.02
3182 3911 6.591834 CACCAGATGAAGTTACGAGAAATCTT 59.408 38.462 0.00 0.00 0.00 2.40
3183 3912 6.102663 CACCAGATGAAGTTACGAGAAATCT 58.897 40.000 0.00 0.00 0.00 2.40
3184 3913 5.220491 GCACCAGATGAAGTTACGAGAAATC 60.220 44.000 0.00 0.00 0.00 2.17
3185 3914 4.631813 GCACCAGATGAAGTTACGAGAAAT 59.368 41.667 0.00 0.00 0.00 2.17
3186 3915 3.994392 GCACCAGATGAAGTTACGAGAAA 59.006 43.478 0.00 0.00 0.00 2.52
3187 3916 3.585862 GCACCAGATGAAGTTACGAGAA 58.414 45.455 0.00 0.00 0.00 2.87
3188 3917 2.415491 CGCACCAGATGAAGTTACGAGA 60.415 50.000 0.00 0.00 0.00 4.04
3189 3918 1.920574 CGCACCAGATGAAGTTACGAG 59.079 52.381 0.00 0.00 0.00 4.18
3190 3919 1.403647 CCGCACCAGATGAAGTTACGA 60.404 52.381 0.00 0.00 0.00 3.43
3191 3920 0.999406 CCGCACCAGATGAAGTTACG 59.001 55.000 0.00 0.00 0.00 3.18
3192 3921 1.732259 CACCGCACCAGATGAAGTTAC 59.268 52.381 0.00 0.00 0.00 2.50
3193 3922 1.621317 TCACCGCACCAGATGAAGTTA 59.379 47.619 0.00 0.00 0.00 2.24
3194 3923 0.396435 TCACCGCACCAGATGAAGTT 59.604 50.000 0.00 0.00 0.00 2.66
3195 3924 0.320771 GTCACCGCACCAGATGAAGT 60.321 55.000 0.00 0.00 0.00 3.01
3196 3925 0.320683 TGTCACCGCACCAGATGAAG 60.321 55.000 0.00 0.00 0.00 3.02
3197 3926 0.107643 TTGTCACCGCACCAGATGAA 59.892 50.000 0.00 0.00 0.00 2.57
3198 3927 0.324614 ATTGTCACCGCACCAGATGA 59.675 50.000 0.00 0.00 0.00 2.92
3199 3928 1.167851 AATTGTCACCGCACCAGATG 58.832 50.000 0.00 0.00 0.00 2.90
3200 3929 1.812571 GAAATTGTCACCGCACCAGAT 59.187 47.619 0.00 0.00 0.00 2.90
3201 3930 1.234821 GAAATTGTCACCGCACCAGA 58.765 50.000 0.00 0.00 0.00 3.86
3202 3931 0.950836 TGAAATTGTCACCGCACCAG 59.049 50.000 0.00 0.00 0.00 4.00
3203 3932 1.393603 TTGAAATTGTCACCGCACCA 58.606 45.000 0.00 0.00 35.39 4.17
3204 3933 2.500509 TTTGAAATTGTCACCGCACC 57.499 45.000 0.00 0.00 35.39 5.01
3205 3934 4.760683 CATTTTTGAAATTGTCACCGCAC 58.239 39.130 0.00 0.00 35.39 5.34
3206 3935 3.247173 GCATTTTTGAAATTGTCACCGCA 59.753 39.130 0.00 0.00 35.39 5.69
3207 3936 3.661419 CGCATTTTTGAAATTGTCACCGC 60.661 43.478 0.00 0.00 35.39 5.68
3208 3937 3.733224 TCGCATTTTTGAAATTGTCACCG 59.267 39.130 0.00 0.00 35.39 4.94
3209 3938 4.744631 AGTCGCATTTTTGAAATTGTCACC 59.255 37.500 0.00 0.00 35.39 4.02
3210 3939 5.332506 CCAGTCGCATTTTTGAAATTGTCAC 60.333 40.000 0.00 0.04 35.39 3.67
3211 3940 4.744137 CCAGTCGCATTTTTGAAATTGTCA 59.256 37.500 0.00 0.00 0.00 3.58
3212 3941 4.150451 CCCAGTCGCATTTTTGAAATTGTC 59.850 41.667 0.00 0.00 0.00 3.18
3213 3942 4.057432 CCCAGTCGCATTTTTGAAATTGT 58.943 39.130 0.00 0.00 0.00 2.71
3214 3943 3.432933 CCCCAGTCGCATTTTTGAAATTG 59.567 43.478 0.00 0.00 0.00 2.32
3215 3944 3.556843 CCCCCAGTCGCATTTTTGAAATT 60.557 43.478 0.00 0.00 0.00 1.82
3216 3945 2.028203 CCCCCAGTCGCATTTTTGAAAT 60.028 45.455 0.00 0.00 0.00 2.17
3217 3946 1.342819 CCCCCAGTCGCATTTTTGAAA 59.657 47.619 0.00 0.00 0.00 2.69
3218 3947 0.965439 CCCCCAGTCGCATTTTTGAA 59.035 50.000 0.00 0.00 0.00 2.69
3219 3948 1.531739 GCCCCCAGTCGCATTTTTGA 61.532 55.000 0.00 0.00 0.00 2.69
3220 3949 1.079888 GCCCCCAGTCGCATTTTTG 60.080 57.895 0.00 0.00 0.00 2.44
3221 3950 2.282783 GGCCCCCAGTCGCATTTTT 61.283 57.895 0.00 0.00 0.00 1.94
3222 3951 2.679996 GGCCCCCAGTCGCATTTT 60.680 61.111 0.00 0.00 0.00 1.82
3223 3952 3.978193 TGGCCCCCAGTCGCATTT 61.978 61.111 0.00 0.00 0.00 2.32
3224 3953 4.740822 GTGGCCCCCAGTCGCATT 62.741 66.667 0.00 0.00 32.34 3.56
3236 3965 1.209747 CCAGTTTACTAGGGAGTGGCC 59.790 57.143 0.00 0.00 36.28 5.36
3237 3966 2.185387 TCCAGTTTACTAGGGAGTGGC 58.815 52.381 9.90 0.00 36.28 5.01
3238 3967 4.081586 GTCTTCCAGTTTACTAGGGAGTGG 60.082 50.000 8.90 8.90 36.28 4.00
3239 3968 4.380655 CGTCTTCCAGTTTACTAGGGAGTG 60.381 50.000 0.00 0.00 36.28 3.51
3240 3969 3.762823 CGTCTTCCAGTTTACTAGGGAGT 59.237 47.826 0.00 0.00 39.92 3.85
3241 3970 4.015084 TCGTCTTCCAGTTTACTAGGGAG 58.985 47.826 0.00 0.00 0.00 4.30
3242 3971 4.038271 TCGTCTTCCAGTTTACTAGGGA 57.962 45.455 0.00 0.00 0.00 4.20
3243 3972 4.159879 ACATCGTCTTCCAGTTTACTAGGG 59.840 45.833 0.00 0.00 0.00 3.53
3244 3973 5.103000 CACATCGTCTTCCAGTTTACTAGG 58.897 45.833 0.00 0.00 0.00 3.02
3245 3974 4.563184 GCACATCGTCTTCCAGTTTACTAG 59.437 45.833 0.00 0.00 0.00 2.57
3246 3975 4.021807 TGCACATCGTCTTCCAGTTTACTA 60.022 41.667 0.00 0.00 0.00 1.82
3247 3976 3.244078 TGCACATCGTCTTCCAGTTTACT 60.244 43.478 0.00 0.00 0.00 2.24
3248 3977 3.064207 TGCACATCGTCTTCCAGTTTAC 58.936 45.455 0.00 0.00 0.00 2.01
3249 3978 3.325870 CTGCACATCGTCTTCCAGTTTA 58.674 45.455 0.00 0.00 0.00 2.01
3250 3979 2.146342 CTGCACATCGTCTTCCAGTTT 58.854 47.619 0.00 0.00 0.00 2.66
3251 3980 1.609061 CCTGCACATCGTCTTCCAGTT 60.609 52.381 0.00 0.00 0.00 3.16
3252 3981 0.036952 CCTGCACATCGTCTTCCAGT 60.037 55.000 0.00 0.00 0.00 4.00
3253 3982 1.364626 GCCTGCACATCGTCTTCCAG 61.365 60.000 0.00 0.00 0.00 3.86
3254 3983 1.375908 GCCTGCACATCGTCTTCCA 60.376 57.895 0.00 0.00 0.00 3.53
3255 3984 2.109126 GGCCTGCACATCGTCTTCC 61.109 63.158 0.00 0.00 0.00 3.46
3256 3985 0.175760 TAGGCCTGCACATCGTCTTC 59.824 55.000 17.99 0.00 0.00 2.87
3257 3986 0.613260 TTAGGCCTGCACATCGTCTT 59.387 50.000 17.99 0.00 0.00 3.01
3258 3987 0.176680 CTTAGGCCTGCACATCGTCT 59.823 55.000 17.99 0.00 0.00 4.18
3259 3988 0.811616 CCTTAGGCCTGCACATCGTC 60.812 60.000 17.99 0.00 0.00 4.20
3260 3989 1.221840 CCTTAGGCCTGCACATCGT 59.778 57.895 17.99 0.00 0.00 3.73
3261 3990 2.182842 GCCTTAGGCCTGCACATCG 61.183 63.158 17.99 0.00 44.06 3.84
3262 3991 3.833304 GCCTTAGGCCTGCACATC 58.167 61.111 17.99 0.00 44.06 3.06
3281 4010 3.866582 GATCCCGAGCCCACCCAG 61.867 72.222 0.00 0.00 0.00 4.45
3282 4011 4.731853 TGATCCCGAGCCCACCCA 62.732 66.667 0.00 0.00 0.00 4.51
3283 4012 4.176752 GTGATCCCGAGCCCACCC 62.177 72.222 0.00 0.00 0.00 4.61
3284 4013 4.530857 CGTGATCCCGAGCCCACC 62.531 72.222 0.00 0.00 0.00 4.61
3285 4014 4.530857 CCGTGATCCCGAGCCCAC 62.531 72.222 0.00 0.00 0.00 4.61
3286 4015 4.770362 TCCGTGATCCCGAGCCCA 62.770 66.667 0.00 0.00 0.00 5.36
3287 4016 4.222847 GTCCGTGATCCCGAGCCC 62.223 72.222 0.00 0.00 0.00 5.19
3288 4017 4.222847 GGTCCGTGATCCCGAGCC 62.223 72.222 0.00 0.00 0.00 4.70
3289 4018 2.722201 AAGGTCCGTGATCCCGAGC 61.722 63.158 0.00 0.00 0.00 5.03
3290 4019 1.141881 CAAGGTCCGTGATCCCGAG 59.858 63.158 0.00 0.00 0.00 4.63
3291 4020 0.901114 TTCAAGGTCCGTGATCCCGA 60.901 55.000 8.42 0.00 0.00 5.14
3292 4021 0.036765 TTTCAAGGTCCGTGATCCCG 60.037 55.000 8.42 0.00 0.00 5.14
3293 4022 1.679032 CCTTTCAAGGTCCGTGATCCC 60.679 57.143 8.42 0.00 41.41 3.85
3294 4023 1.739067 CCTTTCAAGGTCCGTGATCC 58.261 55.000 8.42 0.00 41.41 3.36
3305 4034 4.646572 AGAGCTCTACCAAACCTTTCAAG 58.353 43.478 16.50 0.00 0.00 3.02
3306 4035 4.505039 GGAGAGCTCTACCAAACCTTTCAA 60.505 45.833 18.25 0.00 0.00 2.69
3307 4036 3.008049 GGAGAGCTCTACCAAACCTTTCA 59.992 47.826 18.25 0.00 0.00 2.69
3308 4037 3.601435 GGAGAGCTCTACCAAACCTTTC 58.399 50.000 18.25 0.00 0.00 2.62
3309 4038 2.028020 CGGAGAGCTCTACCAAACCTTT 60.028 50.000 20.65 0.00 0.00 3.11
3310 4039 1.550976 CGGAGAGCTCTACCAAACCTT 59.449 52.381 20.65 0.00 0.00 3.50
3311 4040 1.187087 CGGAGAGCTCTACCAAACCT 58.813 55.000 20.65 0.00 0.00 3.50
3312 4041 0.896226 ACGGAGAGCTCTACCAAACC 59.104 55.000 20.65 13.13 0.00 3.27
3313 4042 1.819903 AGACGGAGAGCTCTACCAAAC 59.180 52.381 20.65 13.64 0.00 2.93
3314 4043 1.819288 CAGACGGAGAGCTCTACCAAA 59.181 52.381 20.65 0.00 0.00 3.28
3315 4044 1.464734 CAGACGGAGAGCTCTACCAA 58.535 55.000 20.65 0.00 0.00 3.67
3316 4045 1.032657 GCAGACGGAGAGCTCTACCA 61.033 60.000 20.65 0.00 0.00 3.25
3317 4046 1.731093 GCAGACGGAGAGCTCTACC 59.269 63.158 20.65 18.80 0.00 3.18
3318 4047 1.353804 CGCAGACGGAGAGCTCTAC 59.646 63.158 18.25 17.44 34.97 2.59
3319 4048 0.677098 AACGCAGACGGAGAGCTCTA 60.677 55.000 18.25 0.00 46.04 2.43
3320 4049 1.974343 AACGCAGACGGAGAGCTCT 60.974 57.895 18.28 18.28 46.04 4.09
3321 4050 1.803519 CAACGCAGACGGAGAGCTC 60.804 63.158 5.27 5.27 46.04 4.09
3322 4051 2.259818 CAACGCAGACGGAGAGCT 59.740 61.111 0.00 0.00 46.04 4.09
3323 4052 2.811317 CCAACGCAGACGGAGAGC 60.811 66.667 0.00 0.00 46.04 4.09
3324 4053 2.811317 GCCAACGCAGACGGAGAG 60.811 66.667 0.00 0.00 46.04 3.20
3325 4054 4.373116 GGCCAACGCAGACGGAGA 62.373 66.667 0.00 0.00 46.04 3.71
3335 4064 3.136123 CATGAGCCAGGGCCAACG 61.136 66.667 6.18 0.00 43.17 4.10
3336 4065 2.036256 ACATGAGCCAGGGCCAAC 59.964 61.111 6.18 0.00 43.17 3.77
3337 4066 2.036098 CACATGAGCCAGGGCCAA 59.964 61.111 6.18 0.00 43.17 4.52
3338 4067 4.051167 CCACATGAGCCAGGGCCA 62.051 66.667 6.18 5.33 43.17 5.36
3339 4068 3.731728 TCCACATGAGCCAGGGCC 61.732 66.667 6.70 0.00 43.17 5.80
3340 4069 2.439156 GTCCACATGAGCCAGGGC 60.439 66.667 0.00 0.97 42.33 5.19
3341 4070 2.273449 GGTCCACATGAGCCAGGG 59.727 66.667 0.00 0.00 35.38 4.45
3342 4071 2.124983 CGGTCCACATGAGCCAGG 60.125 66.667 0.00 0.00 38.27 4.45
3343 4072 1.448540 GTCGGTCCACATGAGCCAG 60.449 63.158 0.00 0.00 38.27 4.85
3344 4073 2.662596 GTCGGTCCACATGAGCCA 59.337 61.111 0.00 0.00 38.27 4.75
3345 4074 2.125106 GGTCGGTCCACATGAGCC 60.125 66.667 0.00 0.00 38.27 4.70
3346 4075 2.125106 GGGTCGGTCCACATGAGC 60.125 66.667 0.00 0.00 38.11 4.26
3347 4076 1.219124 CAGGGTCGGTCCACATGAG 59.781 63.158 0.00 0.00 38.11 2.90
3348 4077 1.229051 TCAGGGTCGGTCCACATGA 60.229 57.895 0.00 0.00 38.11 3.07
3349 4078 1.079127 GTCAGGGTCGGTCCACATG 60.079 63.158 0.00 0.00 38.11 3.21
3350 4079 2.291043 GGTCAGGGTCGGTCCACAT 61.291 63.158 0.00 0.00 38.11 3.21
3351 4080 2.920912 GGTCAGGGTCGGTCCACA 60.921 66.667 0.00 0.00 38.11 4.17
3352 4081 4.065281 CGGTCAGGGTCGGTCCAC 62.065 72.222 0.00 0.00 38.11 4.02
3359 4088 4.394712 CCACTGCCGGTCAGGGTC 62.395 72.222 23.76 0.00 44.82 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.