Multiple sequence alignment - TraesCS6B01G174300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G174300 chr6B 100.000 3076 0 0 1 3076 188695065 188698140 0.000000e+00 5681.0
1 TraesCS6B01G174300 chr6B 86.589 947 109 7 1395 2333 5101613 5102549 0.000000e+00 1029.0
2 TraesCS6B01G174300 chr6B 91.489 47 4 0 2579 2625 519982810 519982764 7.120000e-07 65.8
3 TraesCS6B01G174300 chr6D 93.401 1091 45 12 288 1357 103034550 103035634 0.000000e+00 1591.0
4 TraesCS6B01G174300 chr6D 95.433 832 29 3 1393 2219 103035634 103036461 0.000000e+00 1317.0
5 TraesCS6B01G174300 chr6D 97.959 98 1 1 1 98 103031034 103031130 5.270000e-38 169.0
6 TraesCS6B01G174300 chr6D 92.373 118 9 0 162 279 103034315 103034432 5.270000e-38 169.0
7 TraesCS6B01G174300 chr6D 88.889 54 4 2 2580 2632 427000444 427000392 7.120000e-07 65.8
8 TraesCS6B01G174300 chr6A 91.085 1088 61 17 288 1357 124310783 124311852 0.000000e+00 1439.0
9 TraesCS6B01G174300 chr6A 95.427 831 30 4 1393 2219 124311852 124312678 0.000000e+00 1317.0
10 TraesCS6B01G174300 chr6A 87.010 893 107 3 1401 2293 1062668 1063551 0.000000e+00 998.0
11 TraesCS6B01G174300 chr6A 81.391 489 67 17 821 1302 1062162 1062633 8.050000e-101 377.0
12 TraesCS6B01G174300 chr6A 89.964 279 26 2 1 279 124310392 124310668 2.920000e-95 359.0
13 TraesCS6B01G174300 chr6A 93.458 107 7 0 2149 2255 124911835 124911729 3.170000e-35 159.0
14 TraesCS6B01G174300 chr6A 91.304 115 7 3 2143 2255 124428848 124428961 1.480000e-33 154.0
15 TraesCS6B01G174300 chr4A 93.617 47 3 0 2579 2625 319196338 319196292 1.530000e-08 71.3
16 TraesCS6B01G174300 chr5A 93.478 46 3 0 2580 2625 688976233 688976188 5.500000e-08 69.4
17 TraesCS6B01G174300 chr7D 91.489 47 4 0 2579 2625 454486958 454487004 7.120000e-07 65.8
18 TraesCS6B01G174300 chr5D 88.889 54 4 2 2581 2633 212467712 212467660 7.120000e-07 65.8
19 TraesCS6B01G174300 chr2B 90.000 50 5 0 2576 2625 583405877 583405926 7.120000e-07 65.8
20 TraesCS6B01G174300 chr2B 93.333 45 1 2 2582 2625 651563144 651563101 7.120000e-07 65.8
21 TraesCS6B01G174300 chr2A 85.294 68 3 7 2580 2645 324614650 324614712 2.560000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G174300 chr6B 188695065 188698140 3075 False 5681.000000 5681 100.000000 1 3076 1 chr6B.!!$F2 3075
1 TraesCS6B01G174300 chr6B 5101613 5102549 936 False 1029.000000 1029 86.589000 1395 2333 1 chr6B.!!$F1 938
2 TraesCS6B01G174300 chr6D 103031034 103036461 5427 False 811.500000 1591 94.791500 1 2219 4 chr6D.!!$F1 2218
3 TraesCS6B01G174300 chr6A 124310392 124312678 2286 False 1038.333333 1439 92.158667 1 2219 3 chr6A.!!$F3 2218
4 TraesCS6B01G174300 chr6A 1062162 1063551 1389 False 687.500000 998 84.200500 821 2293 2 chr6A.!!$F2 1472

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
286 3465 0.107945 GAAGCTCAGATGCCTCGGTT 60.108 55.0 0.0 0.0 0.0 4.44 F
1040 4365 0.108804 GAGACGATGAACAAGCCCGA 60.109 55.0 0.0 0.0 0.0 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1963 5301 0.038166 GCAGGTGATGAACTTGGGGA 59.962 55.0 0.0 0.0 36.41 4.81 R
2487 5834 0.037046 GCATTTGAGTTTGGGGGCAG 60.037 55.0 0.0 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 5.662657 AGCCCTATTTTGTGCTAATTTGGAT 59.337 36.000 0.00 0.00 30.97 3.41
100 3251 4.412796 TTGGATCTACAGCCATGAGAAG 57.587 45.455 0.00 0.00 33.46 2.85
112 3263 3.825328 CCATGAGAAGGGGTGGAAATAG 58.175 50.000 0.00 0.00 0.00 1.73
135 3314 1.592400 GCACAACAAACCAGCCAGC 60.592 57.895 0.00 0.00 0.00 4.85
136 3315 1.067916 CACAACAAACCAGCCAGCC 59.932 57.895 0.00 0.00 0.00 4.85
137 3316 1.381056 ACAACAAACCAGCCAGCCA 60.381 52.632 0.00 0.00 0.00 4.75
138 3317 1.067916 CAACAAACCAGCCAGCCAC 59.932 57.895 0.00 0.00 0.00 5.01
139 3318 2.489275 AACAAACCAGCCAGCCACG 61.489 57.895 0.00 0.00 0.00 4.94
140 3319 2.594303 CAAACCAGCCAGCCACGA 60.594 61.111 0.00 0.00 0.00 4.35
141 3320 2.192861 CAAACCAGCCAGCCACGAA 61.193 57.895 0.00 0.00 0.00 3.85
142 3321 2.193536 AAACCAGCCAGCCACGAAC 61.194 57.895 0.00 0.00 0.00 3.95
143 3322 2.902423 AAACCAGCCAGCCACGAACA 62.902 55.000 0.00 0.00 0.00 3.18
144 3323 2.360350 CCAGCCAGCCACGAACAT 60.360 61.111 0.00 0.00 0.00 2.71
145 3324 2.401766 CCAGCCAGCCACGAACATC 61.402 63.158 0.00 0.00 0.00 3.06
146 3325 1.672030 CAGCCAGCCACGAACATCA 60.672 57.895 0.00 0.00 0.00 3.07
147 3326 1.672356 AGCCAGCCACGAACATCAC 60.672 57.895 0.00 0.00 0.00 3.06
148 3327 2.690778 GCCAGCCACGAACATCACC 61.691 63.158 0.00 0.00 0.00 4.02
149 3328 2.390599 CCAGCCACGAACATCACCG 61.391 63.158 0.00 0.00 0.00 4.94
150 3329 1.374125 CAGCCACGAACATCACCGA 60.374 57.895 0.00 0.00 0.00 4.69
151 3330 1.374252 AGCCACGAACATCACCGAC 60.374 57.895 0.00 0.00 0.00 4.79
152 3331 1.666553 GCCACGAACATCACCGACA 60.667 57.895 0.00 0.00 0.00 4.35
153 3332 1.225376 GCCACGAACATCACCGACAA 61.225 55.000 0.00 0.00 0.00 3.18
154 3333 1.222300 CCACGAACATCACCGACAAA 58.778 50.000 0.00 0.00 0.00 2.83
155 3334 1.600013 CCACGAACATCACCGACAAAA 59.400 47.619 0.00 0.00 0.00 2.44
156 3335 2.601266 CCACGAACATCACCGACAAAAC 60.601 50.000 0.00 0.00 0.00 2.43
157 3336 1.259507 ACGAACATCACCGACAAAACG 59.740 47.619 0.00 0.00 0.00 3.60
166 3345 2.875080 CCGACAAAACGGTGAGAATC 57.125 50.000 0.00 0.00 46.70 2.52
177 3356 2.894902 GGTGAGAATCCGAAAGAGTCC 58.105 52.381 0.00 0.00 40.55 3.85
182 3361 4.770531 TGAGAATCCGAAAGAGTCCTGTTA 59.229 41.667 0.00 0.00 40.55 2.41
184 3363 6.070767 TGAGAATCCGAAAGAGTCCTGTTAAT 60.071 38.462 0.00 0.00 40.55 1.40
208 3387 4.101585 GGAGTGACCAGGACATGATATTCA 59.898 45.833 0.00 0.00 38.79 2.57
241 3420 4.431661 AAGCTCAAGCAATTCTAACTGC 57.568 40.909 4.59 0.00 45.16 4.40
283 3462 0.179127 TTCGAAGCTCAGATGCCTCG 60.179 55.000 0.00 1.66 45.11 4.63
284 3463 1.591059 CGAAGCTCAGATGCCTCGG 60.591 63.158 0.00 0.00 41.52 4.63
285 3464 1.519719 GAAGCTCAGATGCCTCGGT 59.480 57.895 0.00 0.00 0.00 4.69
286 3465 0.107945 GAAGCTCAGATGCCTCGGTT 60.108 55.000 0.00 0.00 0.00 4.44
459 3761 9.739276 TCAAGGACTAAATCAATCATAACAGTT 57.261 29.630 0.00 0.00 0.00 3.16
523 3830 9.429359 CATATATGTTCTCTGGACAGAATTACC 57.571 37.037 4.43 0.00 36.94 2.85
634 3944 8.965986 AGAAGCGAAATTTACAGGAAAAATAC 57.034 30.769 0.00 0.00 0.00 1.89
720 4032 7.418368 CCATGATCCCATCTATACTGTGTATCC 60.418 44.444 0.00 0.00 0.00 2.59
743 4055 0.552367 AGTGATGGGATGGGGGACAA 60.552 55.000 0.00 0.00 0.00 3.18
795 4107 5.499313 TCAGTCTTATTCATGCATGTGGAA 58.501 37.500 25.43 13.64 0.00 3.53
796 4108 6.124340 TCAGTCTTATTCATGCATGTGGAAT 58.876 36.000 25.43 19.22 35.57 3.01
799 4111 6.379133 AGTCTTATTCATGCATGTGGAATTGT 59.621 34.615 25.43 4.72 33.59 2.71
800 4112 7.557358 AGTCTTATTCATGCATGTGGAATTGTA 59.443 33.333 25.43 0.46 33.59 2.41
819 4132 2.736144 ACATGTGCATTCAAAGCCTG 57.264 45.000 0.00 0.00 0.00 4.85
857 4170 3.955471 TCTTCTCATTTCCCAAGCGAAT 58.045 40.909 0.00 0.00 0.00 3.34
860 4173 3.684908 TCTCATTTCCCAAGCGAATTGA 58.315 40.909 2.66 0.00 41.83 2.57
865 4180 5.638657 TCATTTCCCAAGCGAATTGATTTTG 59.361 36.000 2.66 0.00 41.83 2.44
871 4186 5.335127 CCAAGCGAATTGATTTTGGACTAG 58.665 41.667 2.66 0.00 41.83 2.57
947 4266 4.484236 GTCCTCTCTTATCATCATCGCAG 58.516 47.826 0.00 0.00 0.00 5.18
957 4276 0.393402 ATCATCGCAGCCTCAAAGCA 60.393 50.000 0.00 0.00 34.23 3.91
1040 4365 0.108804 GAGACGATGAACAAGCCCGA 60.109 55.000 0.00 0.00 0.00 5.14
1216 4541 0.678048 GCACGGCTTCTTCCTCCATT 60.678 55.000 0.00 0.00 0.00 3.16
1239 4564 3.387050 ACCACTTCTACGAACACCTTCTT 59.613 43.478 0.00 0.00 0.00 2.52
1242 4567 3.567164 ACTTCTACGAACACCTTCTTCGA 59.433 43.478 7.50 0.00 42.57 3.71
1248 4573 1.521423 GAACACCTTCTTCGACACGTG 59.479 52.381 15.48 15.48 0.00 4.49
1303 4628 2.033550 GTCGATCGCTACCATCTTCACT 59.966 50.000 11.09 0.00 0.00 3.41
1304 4629 2.688446 TCGATCGCTACCATCTTCACTT 59.312 45.455 11.09 0.00 0.00 3.16
1305 4630 3.046390 CGATCGCTACCATCTTCACTTC 58.954 50.000 0.26 0.00 0.00 3.01
1306 4631 2.561733 TCGCTACCATCTTCACTTCG 57.438 50.000 0.00 0.00 0.00 3.79
1307 4632 0.924090 CGCTACCATCTTCACTTCGC 59.076 55.000 0.00 0.00 0.00 4.70
1356 4686 4.041567 TGATGCAGAGACAAGAGGGTTTAA 59.958 41.667 0.00 0.00 0.00 1.52
1357 4687 4.431416 TGCAGAGACAAGAGGGTTTAAA 57.569 40.909 0.00 0.00 0.00 1.52
1358 4688 4.985538 TGCAGAGACAAGAGGGTTTAAAT 58.014 39.130 0.00 0.00 0.00 1.40
1359 4689 5.003804 TGCAGAGACAAGAGGGTTTAAATC 58.996 41.667 0.00 0.00 0.00 2.17
1360 4690 5.221925 TGCAGAGACAAGAGGGTTTAAATCT 60.222 40.000 0.00 0.00 0.00 2.40
1361 4691 5.352846 GCAGAGACAAGAGGGTTTAAATCTC 59.647 44.000 11.35 11.35 33.13 2.75
1362 4692 5.877564 CAGAGACAAGAGGGTTTAAATCTCC 59.122 44.000 14.15 7.26 33.35 3.71
1363 4693 5.788014 AGAGACAAGAGGGTTTAAATCTCCT 59.212 40.000 14.15 10.93 33.35 3.69
1364 4694 6.273495 AGAGACAAGAGGGTTTAAATCTCCTT 59.727 38.462 14.15 8.28 33.35 3.36
1365 4695 6.853490 AGACAAGAGGGTTTAAATCTCCTTT 58.147 36.000 14.15 5.59 0.00 3.11
1366 4696 6.943146 AGACAAGAGGGTTTAAATCTCCTTTC 59.057 38.462 14.15 7.53 0.00 2.62
1367 4697 6.610830 ACAAGAGGGTTTAAATCTCCTTTCA 58.389 36.000 14.15 0.00 0.00 2.69
1368 4698 6.717084 ACAAGAGGGTTTAAATCTCCTTTCAG 59.283 38.462 14.15 7.00 0.00 3.02
1369 4699 6.704056 AGAGGGTTTAAATCTCCTTTCAGA 57.296 37.500 14.15 0.00 0.00 3.27
1370 4700 6.716284 AGAGGGTTTAAATCTCCTTTCAGAG 58.284 40.000 14.15 0.00 35.04 3.35
1371 4701 6.502158 AGAGGGTTTAAATCTCCTTTCAGAGA 59.498 38.462 14.15 0.00 46.59 3.10
1372 4702 7.017651 AGAGGGTTTAAATCTCCTTTCAGAGAA 59.982 37.037 14.15 0.00 45.70 2.87
1373 4703 7.526918 AGGGTTTAAATCTCCTTTCAGAGAAA 58.473 34.615 0.00 0.00 45.70 2.52
1374 4704 7.667635 AGGGTTTAAATCTCCTTTCAGAGAAAG 59.332 37.037 11.52 11.52 45.70 2.62
1375 4705 7.665974 GGGTTTAAATCTCCTTTCAGAGAAAGA 59.334 37.037 18.31 2.26 45.70 2.52
1376 4706 9.067986 GGTTTAAATCTCCTTTCAGAGAAAGAA 57.932 33.333 18.31 0.00 45.70 2.52
1381 4711 8.525290 AATCTCCTTTCAGAGAAAGAAAAACA 57.475 30.769 18.31 0.46 45.70 2.83
1382 4712 7.321745 TCTCCTTTCAGAGAAAGAAAAACAC 57.678 36.000 18.31 0.00 39.94 3.32
1383 4713 6.884295 TCTCCTTTCAGAGAAAGAAAAACACA 59.116 34.615 18.31 0.00 39.94 3.72
1384 4714 7.557719 TCTCCTTTCAGAGAAAGAAAAACACAT 59.442 33.333 18.31 0.00 39.94 3.21
1385 4715 8.746052 TCCTTTCAGAGAAAGAAAAACACATA 57.254 30.769 18.31 0.00 34.84 2.29
1386 4716 8.840321 TCCTTTCAGAGAAAGAAAAACACATAG 58.160 33.333 18.31 0.92 34.84 2.23
1387 4717 8.840321 CCTTTCAGAGAAAGAAAAACACATAGA 58.160 33.333 18.31 0.00 34.84 1.98
1424 4754 6.095300 GTCTCTCTCAGAAGATGATCTGTTGA 59.905 42.308 0.00 2.49 45.65 3.18
1426 4756 6.629128 TCTCTCAGAAGATGATCTGTTGAAC 58.371 40.000 0.00 0.00 45.65 3.18
1508 4846 6.098838 AGTTCAGCATCAGTATCATACCTTCA 59.901 38.462 0.00 0.00 0.00 3.02
1662 5000 1.074775 ACGGCTTTCTCATTGGCCA 59.925 52.632 0.00 0.00 44.27 5.36
1706 5044 3.417275 CTTCTCCGCGCTCATCGGT 62.417 63.158 5.56 0.00 46.49 4.69
2043 5381 2.409055 TGCGTTGCTGGGATCATGC 61.409 57.895 0.00 0.00 0.00 4.06
2044 5382 2.409055 GCGTTGCTGGGATCATGCA 61.409 57.895 0.00 0.00 34.69 3.96
2045 5383 1.731433 GCGTTGCTGGGATCATGCAT 61.731 55.000 0.00 0.00 36.55 3.96
2046 5384 0.030235 CGTTGCTGGGATCATGCATG 59.970 55.000 21.07 21.07 36.55 4.06
2167 5505 3.668386 GCCTGGCGTAAAACAGCT 58.332 55.556 1.35 0.00 33.43 4.24
2168 5506 2.849081 GCCTGGCGTAAAACAGCTA 58.151 52.632 1.35 0.00 33.43 3.32
2255 5594 8.430801 CTTTGCTAAGCTCAGACAGTAATATT 57.569 34.615 0.00 0.00 0.00 1.28
2326 5673 9.959721 ATTTGTTGTGTTCCTATCTGTACTTAT 57.040 29.630 0.00 0.00 0.00 1.73
2327 5674 8.771920 TTGTTGTGTTCCTATCTGTACTTATG 57.228 34.615 0.00 0.00 0.00 1.90
2330 5677 9.431887 GTTGTGTTCCTATCTGTACTTATGAAA 57.568 33.333 0.00 0.00 0.00 2.69
2376 5723 8.726870 TTGTTCTTAAAGGTATACTATGGTGC 57.273 34.615 2.25 0.00 0.00 5.01
2377 5724 7.277396 TGTTCTTAAAGGTATACTATGGTGCC 58.723 38.462 2.25 0.00 0.00 5.01
2378 5725 6.092955 TCTTAAAGGTATACTATGGTGCCG 57.907 41.667 2.25 0.00 0.00 5.69
2379 5726 2.833631 AAGGTATACTATGGTGCCGC 57.166 50.000 2.25 0.00 0.00 6.53
2380 5727 0.601558 AGGTATACTATGGTGCCGCG 59.398 55.000 0.00 0.00 0.00 6.46
2381 5728 1.012486 GGTATACTATGGTGCCGCGC 61.012 60.000 0.00 0.00 0.00 6.86
2382 5729 0.038526 GTATACTATGGTGCCGCGCT 60.039 55.000 5.56 0.00 0.00 5.92
2383 5730 0.038618 TATACTATGGTGCCGCGCTG 60.039 55.000 5.56 0.00 0.00 5.18
2384 5731 2.028125 ATACTATGGTGCCGCGCTGT 62.028 55.000 5.56 1.51 0.00 4.40
2385 5732 2.899345 TACTATGGTGCCGCGCTGTG 62.899 60.000 5.56 0.00 0.00 3.66
2386 5733 4.075854 TATGGTGCCGCGCTGTGA 62.076 61.111 5.56 0.00 0.00 3.58
2392 5739 4.819761 GCCGCGCTGTGAGGATGA 62.820 66.667 15.39 0.00 40.56 2.92
2393 5740 2.125552 CCGCGCTGTGAGGATGAA 60.126 61.111 5.56 0.00 40.56 2.57
2394 5741 1.741401 CCGCGCTGTGAGGATGAAA 60.741 57.895 5.56 0.00 40.56 2.69
2395 5742 1.091771 CCGCGCTGTGAGGATGAAAT 61.092 55.000 5.56 0.00 40.56 2.17
2396 5743 1.570813 CGCGCTGTGAGGATGAAATA 58.429 50.000 5.56 0.00 0.00 1.40
2397 5744 2.138320 CGCGCTGTGAGGATGAAATAT 58.862 47.619 5.56 0.00 0.00 1.28
2398 5745 2.545526 CGCGCTGTGAGGATGAAATATT 59.454 45.455 5.56 0.00 0.00 1.28
2399 5746 3.002656 CGCGCTGTGAGGATGAAATATTT 59.997 43.478 5.56 0.00 0.00 1.40
2400 5747 4.496341 CGCGCTGTGAGGATGAAATATTTT 60.496 41.667 5.56 0.00 0.00 1.82
2401 5748 4.972440 GCGCTGTGAGGATGAAATATTTTC 59.028 41.667 0.00 0.00 0.00 2.29
2402 5749 5.220931 GCGCTGTGAGGATGAAATATTTTCT 60.221 40.000 0.00 0.00 0.00 2.52
2403 5750 6.017934 GCGCTGTGAGGATGAAATATTTTCTA 60.018 38.462 0.00 0.00 0.00 2.10
2404 5751 7.308229 GCGCTGTGAGGATGAAATATTTTCTAT 60.308 37.037 0.00 0.00 0.00 1.98
2405 5752 8.013947 CGCTGTGAGGATGAAATATTTTCTATG 58.986 37.037 1.43 0.00 0.00 2.23
2406 5753 8.295288 GCTGTGAGGATGAAATATTTTCTATGG 58.705 37.037 1.43 0.00 0.00 2.74
2407 5754 9.565090 CTGTGAGGATGAAATATTTTCTATGGA 57.435 33.333 1.43 0.00 0.00 3.41
2408 5755 9.342308 TGTGAGGATGAAATATTTTCTATGGAC 57.658 33.333 1.43 0.00 0.00 4.02
2409 5756 9.566432 GTGAGGATGAAATATTTTCTATGGACT 57.434 33.333 1.43 0.00 0.00 3.85
2430 5777 9.542462 TGGACTAGATTTATTCGACTTTAATGG 57.458 33.333 0.00 0.00 0.00 3.16
2431 5778 9.760077 GGACTAGATTTATTCGACTTTAATGGA 57.240 33.333 0.00 0.00 0.00 3.41
2464 5811 8.999431 TCCATTAAAGTCGAATAAATCTATGCC 58.001 33.333 0.00 0.00 0.00 4.40
2465 5812 8.237267 CCATTAAAGTCGAATAAATCTATGCCC 58.763 37.037 0.00 0.00 0.00 5.36
2466 5813 8.783093 CATTAAAGTCGAATAAATCTATGCCCA 58.217 33.333 0.00 0.00 0.00 5.36
2467 5814 8.740123 TTAAAGTCGAATAAATCTATGCCCAA 57.260 30.769 0.00 0.00 0.00 4.12
2468 5815 7.639113 AAAGTCGAATAAATCTATGCCCAAA 57.361 32.000 0.00 0.00 0.00 3.28
2469 5816 7.639113 AAGTCGAATAAATCTATGCCCAAAA 57.361 32.000 0.00 0.00 0.00 2.44
2470 5817 7.823745 AGTCGAATAAATCTATGCCCAAAAT 57.176 32.000 0.00 0.00 0.00 1.82
2471 5818 8.918202 AGTCGAATAAATCTATGCCCAAAATA 57.082 30.769 0.00 0.00 0.00 1.40
2472 5819 9.349713 AGTCGAATAAATCTATGCCCAAAATAA 57.650 29.630 0.00 0.00 0.00 1.40
2475 5822 9.357652 CGAATAAATCTATGCCCAAAATAATGG 57.642 33.333 0.00 0.00 40.35 3.16
2485 5832 4.806640 CCAAAATAATGGGCACAGACTT 57.193 40.909 0.00 0.00 36.79 3.01
2486 5833 5.151297 CCAAAATAATGGGCACAGACTTT 57.849 39.130 0.00 0.00 36.79 2.66
2487 5834 5.170748 CCAAAATAATGGGCACAGACTTTC 58.829 41.667 0.00 0.00 36.79 2.62
2488 5835 5.047092 CCAAAATAATGGGCACAGACTTTCT 60.047 40.000 0.00 0.00 36.79 2.52
2489 5836 7.067094 CCAAAATAATGGGCACAGACTTTCTG 61.067 42.308 0.00 1.51 42.23 3.02
2497 5844 3.437642 CAGACTTTCTGCCCCCAAA 57.562 52.632 0.00 0.00 37.72 3.28
2498 5845 0.961753 CAGACTTTCTGCCCCCAAAC 59.038 55.000 0.00 0.00 37.72 2.93
2499 5846 0.853530 AGACTTTCTGCCCCCAAACT 59.146 50.000 0.00 0.00 0.00 2.66
2500 5847 1.202940 AGACTTTCTGCCCCCAAACTC 60.203 52.381 0.00 0.00 0.00 3.01
2501 5848 0.555769 ACTTTCTGCCCCCAAACTCA 59.444 50.000 0.00 0.00 0.00 3.41
2502 5849 1.063266 ACTTTCTGCCCCCAAACTCAA 60.063 47.619 0.00 0.00 0.00 3.02
2503 5850 2.038659 CTTTCTGCCCCCAAACTCAAA 58.961 47.619 0.00 0.00 0.00 2.69
2504 5851 2.397044 TTCTGCCCCCAAACTCAAAT 57.603 45.000 0.00 0.00 0.00 2.32
2505 5852 1.631405 TCTGCCCCCAAACTCAAATG 58.369 50.000 0.00 0.00 0.00 2.32
2506 5853 0.037046 CTGCCCCCAAACTCAAATGC 60.037 55.000 0.00 0.00 0.00 3.56
2507 5854 0.471591 TGCCCCCAAACTCAAATGCT 60.472 50.000 0.00 0.00 0.00 3.79
2508 5855 0.247460 GCCCCCAAACTCAAATGCTC 59.753 55.000 0.00 0.00 0.00 4.26
2509 5856 1.631405 CCCCCAAACTCAAATGCTCA 58.369 50.000 0.00 0.00 0.00 4.26
2510 5857 1.273327 CCCCCAAACTCAAATGCTCAC 59.727 52.381 0.00 0.00 0.00 3.51
2511 5858 1.273327 CCCCAAACTCAAATGCTCACC 59.727 52.381 0.00 0.00 0.00 4.02
2512 5859 1.273327 CCCAAACTCAAATGCTCACCC 59.727 52.381 0.00 0.00 0.00 4.61
2513 5860 1.962807 CCAAACTCAAATGCTCACCCA 59.037 47.619 0.00 0.00 0.00 4.51
2514 5861 2.564062 CCAAACTCAAATGCTCACCCAT 59.436 45.455 0.00 0.00 0.00 4.00
2515 5862 3.581755 CAAACTCAAATGCTCACCCATG 58.418 45.455 0.00 0.00 0.00 3.66
2516 5863 2.885135 ACTCAAATGCTCACCCATGA 57.115 45.000 0.00 0.00 0.00 3.07
2517 5864 3.377253 ACTCAAATGCTCACCCATGAT 57.623 42.857 0.00 0.00 33.22 2.45
2518 5865 3.285484 ACTCAAATGCTCACCCATGATC 58.715 45.455 0.00 0.00 33.22 2.92
2519 5866 3.284617 CTCAAATGCTCACCCATGATCA 58.715 45.455 0.00 0.00 35.52 2.92
2520 5867 3.284617 TCAAATGCTCACCCATGATCAG 58.715 45.455 0.09 0.00 34.57 2.90
2521 5868 3.021695 CAAATGCTCACCCATGATCAGT 58.978 45.455 0.09 0.00 34.57 3.41
2522 5869 4.080413 TCAAATGCTCACCCATGATCAGTA 60.080 41.667 0.09 0.00 34.57 2.74
2523 5870 4.508551 AATGCTCACCCATGATCAGTAA 57.491 40.909 0.09 0.00 34.57 2.24
2524 5871 3.998913 TGCTCACCCATGATCAGTAAA 57.001 42.857 0.09 0.00 33.22 2.01
2525 5872 4.299586 TGCTCACCCATGATCAGTAAAA 57.700 40.909 0.09 0.00 33.22 1.52
2526 5873 4.858850 TGCTCACCCATGATCAGTAAAAT 58.141 39.130 0.09 0.00 33.22 1.82
2527 5874 5.263599 TGCTCACCCATGATCAGTAAAATT 58.736 37.500 0.09 0.00 33.22 1.82
2528 5875 5.716228 TGCTCACCCATGATCAGTAAAATTT 59.284 36.000 0.09 0.00 33.22 1.82
2529 5876 6.889177 TGCTCACCCATGATCAGTAAAATTTA 59.111 34.615 0.09 0.00 33.22 1.40
2530 5877 7.395772 TGCTCACCCATGATCAGTAAAATTTAA 59.604 33.333 0.09 0.00 33.22 1.52
2531 5878 8.250332 GCTCACCCATGATCAGTAAAATTTAAA 58.750 33.333 0.09 0.00 33.22 1.52
2583 5930 7.897575 TTTTCTACAACAAACATTGCAAAGT 57.102 28.000 1.71 1.06 32.47 2.66
2584 5931 7.897575 TTTCTACAACAAACATTGCAAAGTT 57.102 28.000 13.99 13.99 32.47 2.66
2585 5932 6.884096 TCTACAACAAACATTGCAAAGTTG 57.116 33.333 19.74 20.20 41.37 3.16
2587 5934 7.539436 TCTACAACAAACATTGCAAAGTTGTA 58.461 30.769 25.58 25.58 45.20 2.41
2588 5935 8.194104 TCTACAACAAACATTGCAAAGTTGTAT 58.806 29.630 26.45 19.26 45.60 2.29
2589 5936 7.608308 ACAACAAACATTGCAAAGTTGTATT 57.392 28.000 19.74 11.77 45.20 1.89
2590 5937 8.709386 ACAACAAACATTGCAAAGTTGTATTA 57.291 26.923 19.74 0.00 45.20 0.98
2591 5938 9.323985 ACAACAAACATTGCAAAGTTGTATTAT 57.676 25.926 19.74 1.34 45.20 1.28
2601 5948 8.840833 TGCAAAGTTGTATTATAGTTGAGACA 57.159 30.769 0.00 0.00 0.00 3.41
2602 5949 8.717821 TGCAAAGTTGTATTATAGTTGAGACAC 58.282 33.333 0.00 0.00 0.00 3.67
2603 5950 8.936864 GCAAAGTTGTATTATAGTTGAGACACT 58.063 33.333 0.00 0.00 0.00 3.55
2614 5961 7.923414 ATAGTTGAGACACTTATTTTGGGAC 57.077 36.000 0.00 0.00 0.00 4.46
2615 5962 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
2616 5963 4.610605 TGAGACACTTATTTTGGGACGA 57.389 40.909 0.00 0.00 0.00 4.20
2617 5964 4.963373 TGAGACACTTATTTTGGGACGAA 58.037 39.130 0.00 0.00 0.00 3.85
2618 5965 4.994852 TGAGACACTTATTTTGGGACGAAG 59.005 41.667 0.00 0.00 0.00 3.79
2619 5966 4.324267 AGACACTTATTTTGGGACGAAGG 58.676 43.478 0.00 0.00 0.00 3.46
2620 5967 4.041198 AGACACTTATTTTGGGACGAAGGA 59.959 41.667 0.00 0.00 0.00 3.36
2621 5968 4.721132 ACACTTATTTTGGGACGAAGGAA 58.279 39.130 0.00 0.00 0.00 3.36
2622 5969 4.760204 ACACTTATTTTGGGACGAAGGAAG 59.240 41.667 0.00 0.00 0.00 3.46
2623 5970 4.760204 CACTTATTTTGGGACGAAGGAAGT 59.240 41.667 0.00 0.00 0.00 3.01
2624 5971 5.935789 CACTTATTTTGGGACGAAGGAAGTA 59.064 40.000 0.00 0.00 0.00 2.24
2625 5972 5.936372 ACTTATTTTGGGACGAAGGAAGTAC 59.064 40.000 0.00 0.00 0.00 2.73
2626 5973 3.842007 TTTTGGGACGAAGGAAGTACA 57.158 42.857 0.00 0.00 0.00 2.90
2627 5974 3.842007 TTTGGGACGAAGGAAGTACAA 57.158 42.857 0.00 0.00 0.00 2.41
2628 5975 3.842007 TTGGGACGAAGGAAGTACAAA 57.158 42.857 0.00 0.00 0.00 2.83
2629 5976 4.360951 TTGGGACGAAGGAAGTACAAAT 57.639 40.909 0.00 0.00 0.00 2.32
2630 5977 4.360951 TGGGACGAAGGAAGTACAAATT 57.639 40.909 0.00 0.00 0.00 1.82
2631 5978 5.486735 TGGGACGAAGGAAGTACAAATTA 57.513 39.130 0.00 0.00 0.00 1.40
2632 5979 6.057321 TGGGACGAAGGAAGTACAAATTAT 57.943 37.500 0.00 0.00 0.00 1.28
2633 5980 6.478129 TGGGACGAAGGAAGTACAAATTATT 58.522 36.000 0.00 0.00 0.00 1.40
2634 5981 7.622713 TGGGACGAAGGAAGTACAAATTATTA 58.377 34.615 0.00 0.00 0.00 0.98
2635 5982 8.269317 TGGGACGAAGGAAGTACAAATTATTAT 58.731 33.333 0.00 0.00 0.00 1.28
2636 5983 8.557029 GGGACGAAGGAAGTACAAATTATTATG 58.443 37.037 0.00 0.00 0.00 1.90
2637 5984 9.321562 GGACGAAGGAAGTACAAATTATTATGA 57.678 33.333 0.00 0.00 0.00 2.15
2700 6047 9.994432 AATCGATGCTTCTACTATTTTTGAAAG 57.006 29.630 0.00 0.00 0.00 2.62
2701 6048 7.464358 TCGATGCTTCTACTATTTTTGAAAGC 58.536 34.615 0.00 0.00 0.00 3.51
2702 6049 7.119116 TCGATGCTTCTACTATTTTTGAAAGCA 59.881 33.333 9.05 9.05 32.18 3.91
2703 6050 7.912250 CGATGCTTCTACTATTTTTGAAAGCAT 59.088 33.333 16.85 16.85 36.74 3.79
2704 6051 9.578439 GATGCTTCTACTATTTTTGAAAGCATT 57.422 29.630 17.63 5.39 35.57 3.56
2705 6052 9.933723 ATGCTTCTACTATTTTTGAAAGCATTT 57.066 25.926 12.48 0.00 43.98 2.32
2706 6053 9.762933 TGCTTCTACTATTTTTGAAAGCATTTT 57.237 25.926 2.99 0.00 39.27 1.82
2709 6056 9.487790 TTCTACTATTTTTGAAAGCATTTTGGG 57.512 29.630 0.00 0.00 39.27 4.12
2710 6057 8.646900 TCTACTATTTTTGAAAGCATTTTGGGT 58.353 29.630 0.00 0.00 39.27 4.51
2711 6058 9.921637 CTACTATTTTTGAAAGCATTTTGGGTA 57.078 29.630 0.00 0.00 39.27 3.69
2713 6060 9.620259 ACTATTTTTGAAAGCATTTTGGGTAAA 57.380 25.926 0.00 0.00 39.27 2.01
2748 6095 8.225603 TCACAGAGCATTAGGAATAATTTTCC 57.774 34.615 9.93 9.93 38.86 3.13
2750 6097 8.689972 CACAGAGCATTAGGAATAATTTTCCTT 58.310 33.333 20.08 8.05 46.21 3.36
2751 6098 8.907885 ACAGAGCATTAGGAATAATTTTCCTTC 58.092 33.333 20.08 13.87 46.21 3.46
2752 6099 8.906867 CAGAGCATTAGGAATAATTTTCCTTCA 58.093 33.333 20.08 12.01 46.21 3.02
2753 6100 9.129532 AGAGCATTAGGAATAATTTTCCTTCAG 57.870 33.333 20.08 13.66 46.21 3.02
2754 6101 8.242729 AGCATTAGGAATAATTTTCCTTCAGG 57.757 34.615 20.08 13.28 46.21 3.86
2755 6102 8.061304 AGCATTAGGAATAATTTTCCTTCAGGA 58.939 33.333 20.08 0.00 46.21 3.86
2756 6103 8.864087 GCATTAGGAATAATTTTCCTTCAGGAT 58.136 33.333 20.08 9.52 46.21 3.24
2761 6108 9.997172 AGGAATAATTTTCCTTCAGGATAACTT 57.003 29.630 13.15 0.00 46.21 2.66
2763 6110 9.521503 GAATAATTTTCCTTCAGGATAACTTGC 57.478 33.333 0.00 0.00 44.98 4.01
2764 6111 6.916360 AATTTTCCTTCAGGATAACTTGCA 57.084 33.333 0.00 0.00 44.98 4.08
2765 6112 5.705609 TTTTCCTTCAGGATAACTTGCAC 57.294 39.130 0.00 0.00 44.98 4.57
2766 6113 4.365514 TTCCTTCAGGATAACTTGCACA 57.634 40.909 0.00 0.00 44.98 4.57
2767 6114 4.574674 TCCTTCAGGATAACTTGCACAT 57.425 40.909 0.00 0.00 39.78 3.21
2768 6115 5.692115 TCCTTCAGGATAACTTGCACATA 57.308 39.130 0.00 0.00 39.78 2.29
2769 6116 6.252599 TCCTTCAGGATAACTTGCACATAT 57.747 37.500 0.00 0.00 39.78 1.78
2770 6117 6.057533 TCCTTCAGGATAACTTGCACATATG 58.942 40.000 0.00 0.00 39.78 1.78
2771 6118 5.824624 CCTTCAGGATAACTTGCACATATGT 59.175 40.000 1.41 1.41 37.39 2.29
2772 6119 6.992123 CCTTCAGGATAACTTGCACATATGTA 59.008 38.462 8.32 0.00 37.39 2.29
2773 6120 7.663081 CCTTCAGGATAACTTGCACATATGTAT 59.337 37.037 8.32 0.00 37.39 2.29
2774 6121 9.710900 CTTCAGGATAACTTGCACATATGTATA 57.289 33.333 8.32 0.00 0.00 1.47
2784 6131 9.394767 ACTTGCACATATGTATAAAGTTCATCA 57.605 29.630 17.73 0.00 0.00 3.07
2845 6192 9.732130 TTTCTTTGATTTTAATGTTTATGGGGG 57.268 29.630 0.00 0.00 0.00 5.40
2846 6193 8.671987 TCTTTGATTTTAATGTTTATGGGGGA 57.328 30.769 0.00 0.00 0.00 4.81
2847 6194 9.105844 TCTTTGATTTTAATGTTTATGGGGGAA 57.894 29.630 0.00 0.00 0.00 3.97
2848 6195 9.161629 CTTTGATTTTAATGTTTATGGGGGAAC 57.838 33.333 0.00 0.00 0.00 3.62
2849 6196 7.798710 TGATTTTAATGTTTATGGGGGAACA 57.201 32.000 0.00 0.00 39.78 3.18
2850 6197 7.616313 TGATTTTAATGTTTATGGGGGAACAC 58.384 34.615 0.00 0.00 38.46 3.32
2851 6198 5.646577 TTTAATGTTTATGGGGGAACACG 57.353 39.130 0.00 0.00 38.46 4.49
2852 6199 2.891191 ATGTTTATGGGGGAACACGT 57.109 45.000 0.00 0.00 38.46 4.49
2853 6200 2.660670 TGTTTATGGGGGAACACGTT 57.339 45.000 0.00 0.00 35.32 3.99
2854 6201 2.946785 TGTTTATGGGGGAACACGTTT 58.053 42.857 0.00 0.00 35.32 3.60
2855 6202 3.297736 TGTTTATGGGGGAACACGTTTT 58.702 40.909 0.00 0.00 35.32 2.43
2856 6203 4.467769 TGTTTATGGGGGAACACGTTTTA 58.532 39.130 0.00 0.00 35.32 1.52
2857 6204 5.078256 TGTTTATGGGGGAACACGTTTTAT 58.922 37.500 0.00 0.00 35.32 1.40
2858 6205 6.243900 TGTTTATGGGGGAACACGTTTTATA 58.756 36.000 0.00 0.00 35.32 0.98
2859 6206 6.718454 TGTTTATGGGGGAACACGTTTTATAA 59.282 34.615 0.00 0.00 35.32 0.98
2860 6207 7.094291 TGTTTATGGGGGAACACGTTTTATAAG 60.094 37.037 0.00 0.00 35.32 1.73
2861 6208 4.637387 TGGGGGAACACGTTTTATAAGA 57.363 40.909 0.00 0.00 35.32 2.10
2862 6209 5.182169 TGGGGGAACACGTTTTATAAGAT 57.818 39.130 0.00 0.00 35.32 2.40
2863 6210 4.944930 TGGGGGAACACGTTTTATAAGATG 59.055 41.667 0.00 0.00 35.32 2.90
2864 6211 4.945543 GGGGGAACACGTTTTATAAGATGT 59.054 41.667 0.00 0.00 0.00 3.06
2865 6212 5.416639 GGGGGAACACGTTTTATAAGATGTT 59.583 40.000 0.00 2.66 33.15 2.71
2866 6213 6.071784 GGGGGAACACGTTTTATAAGATGTTT 60.072 38.462 0.00 0.00 30.72 2.83
2867 6214 6.804783 GGGGAACACGTTTTATAAGATGTTTG 59.195 38.462 0.00 0.00 30.72 2.93
2868 6215 6.804783 GGGAACACGTTTTATAAGATGTTTGG 59.195 38.462 0.00 0.00 30.72 3.28
2869 6216 6.307077 GGAACACGTTTTATAAGATGTTTGGC 59.693 38.462 0.00 0.00 30.72 4.52
2870 6217 6.320494 ACACGTTTTATAAGATGTTTGGCA 57.680 33.333 0.00 0.00 0.00 4.92
2871 6218 6.919721 ACACGTTTTATAAGATGTTTGGCAT 58.080 32.000 0.00 0.00 41.24 4.40
2872 6219 8.046294 ACACGTTTTATAAGATGTTTGGCATA 57.954 30.769 0.00 0.00 38.06 3.14
2873 6220 7.966204 ACACGTTTTATAAGATGTTTGGCATAC 59.034 33.333 0.75 0.75 38.06 2.39
2874 6221 8.181573 CACGTTTTATAAGATGTTTGGCATACT 58.818 33.333 9.46 0.00 38.06 2.12
2875 6222 8.736244 ACGTTTTATAAGATGTTTGGCATACTT 58.264 29.630 9.46 3.02 38.06 2.24
2876 6223 9.567848 CGTTTTATAAGATGTTTGGCATACTTT 57.432 29.630 9.46 4.51 38.06 2.66
2883 6230 8.409358 AAGATGTTTGGCATACTTTTCTTACT 57.591 30.769 9.46 0.00 38.06 2.24
2884 6231 8.409358 AGATGTTTGGCATACTTTTCTTACTT 57.591 30.769 9.46 0.00 38.06 2.24
2885 6232 8.860088 AGATGTTTGGCATACTTTTCTTACTTT 58.140 29.630 9.46 0.00 38.06 2.66
2886 6233 8.816640 ATGTTTGGCATACTTTTCTTACTTTG 57.183 30.769 9.46 0.00 35.74 2.77
2887 6234 7.777095 TGTTTGGCATACTTTTCTTACTTTGT 58.223 30.769 9.46 0.00 0.00 2.83
2888 6235 7.918562 TGTTTGGCATACTTTTCTTACTTTGTC 59.081 33.333 9.46 0.00 0.00 3.18
2889 6236 7.817418 TTGGCATACTTTTCTTACTTTGTCT 57.183 32.000 0.00 0.00 0.00 3.41
2890 6237 8.911918 TTGGCATACTTTTCTTACTTTGTCTA 57.088 30.769 0.00 0.00 0.00 2.59
2891 6238 9.515226 TTGGCATACTTTTCTTACTTTGTCTAT 57.485 29.630 0.00 0.00 0.00 1.98
2892 6239 9.515226 TGGCATACTTTTCTTACTTTGTCTATT 57.485 29.630 0.00 0.00 0.00 1.73
2975 6322 9.415008 ACAATGTAATAAGGTTGGTTATATGCA 57.585 29.630 0.00 0.00 0.00 3.96
2978 6325 8.317891 TGTAATAAGGTTGGTTATATGCATCG 57.682 34.615 0.19 0.00 0.00 3.84
2979 6326 7.934665 TGTAATAAGGTTGGTTATATGCATCGT 59.065 33.333 0.19 0.00 0.00 3.73
2980 6327 9.426837 GTAATAAGGTTGGTTATATGCATCGTA 57.573 33.333 0.19 0.00 0.00 3.43
2981 6328 7.900782 ATAAGGTTGGTTATATGCATCGTAC 57.099 36.000 0.19 0.00 0.00 3.67
2982 6329 4.304110 AGGTTGGTTATATGCATCGTACG 58.696 43.478 9.53 9.53 0.00 3.67
2983 6330 4.038282 AGGTTGGTTATATGCATCGTACGA 59.962 41.667 21.93 21.93 0.00 3.43
2984 6331 4.927425 GGTTGGTTATATGCATCGTACGAT 59.073 41.667 24.66 24.66 34.81 3.73
2996 6343 5.182525 CATCGTACGATGCATAGTTCATG 57.817 43.478 37.02 17.04 44.27 3.07
2997 6344 3.638484 TCGTACGATGCATAGTTCATGG 58.362 45.455 17.88 1.30 34.97 3.66
2998 6345 2.731451 CGTACGATGCATAGTTCATGGG 59.269 50.000 17.88 0.00 34.97 4.00
2999 6346 3.728845 GTACGATGCATAGTTCATGGGT 58.271 45.455 17.88 0.00 34.97 4.51
3000 6347 4.557895 CGTACGATGCATAGTTCATGGGTA 60.558 45.833 17.88 0.00 34.97 3.69
3001 6348 4.623932 ACGATGCATAGTTCATGGGTAT 57.376 40.909 6.63 0.00 34.97 2.73
3002 6349 5.738619 ACGATGCATAGTTCATGGGTATA 57.261 39.130 6.63 0.00 34.97 1.47
3003 6350 6.109156 ACGATGCATAGTTCATGGGTATAA 57.891 37.500 6.63 0.00 34.97 0.98
3004 6351 6.530120 ACGATGCATAGTTCATGGGTATAAA 58.470 36.000 6.63 0.00 34.97 1.40
3005 6352 6.995686 ACGATGCATAGTTCATGGGTATAAAA 59.004 34.615 6.63 0.00 34.97 1.52
3006 6353 7.041372 ACGATGCATAGTTCATGGGTATAAAAC 60.041 37.037 6.63 0.00 34.97 2.43
3007 6354 7.173218 CGATGCATAGTTCATGGGTATAAAACT 59.827 37.037 0.00 0.00 34.97 2.66
3008 6355 8.766994 ATGCATAGTTCATGGGTATAAAACTT 57.233 30.769 0.00 0.00 34.97 2.66
3009 6356 8.588290 TGCATAGTTCATGGGTATAAAACTTT 57.412 30.769 0.00 0.00 34.97 2.66
3010 6357 9.030452 TGCATAGTTCATGGGTATAAAACTTTT 57.970 29.630 0.00 0.00 34.97 2.27
3011 6358 9.869757 GCATAGTTCATGGGTATAAAACTTTTT 57.130 29.630 0.00 0.00 34.97 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 1.273838 ACCCCTTCTCATGGCTGTAGA 60.274 52.381 0.00 0.00 0.00 2.59
100 3251 2.024414 GTGCACATCTATTTCCACCCC 58.976 52.381 13.17 0.00 0.00 4.95
112 3263 1.490621 GCTGGTTTGTTGTGCACATC 58.509 50.000 22.39 20.44 34.43 3.06
135 3314 1.222300 TTTGTCGGTGATGTTCGTGG 58.778 50.000 0.00 0.00 0.00 4.94
136 3315 2.635444 GTTTTGTCGGTGATGTTCGTG 58.365 47.619 0.00 0.00 0.00 4.35
137 3316 1.259507 CGTTTTGTCGGTGATGTTCGT 59.740 47.619 0.00 0.00 0.00 3.85
138 3317 1.397945 CCGTTTTGTCGGTGATGTTCG 60.398 52.381 0.00 0.00 44.77 3.95
139 3318 2.309898 CCGTTTTGTCGGTGATGTTC 57.690 50.000 0.00 0.00 44.77 3.18
148 3327 1.126113 CGGATTCTCACCGTTTTGTCG 59.874 52.381 0.00 0.00 44.57 4.35
149 3328 2.875080 CGGATTCTCACCGTTTTGTC 57.125 50.000 0.00 0.00 44.57 3.18
157 3336 2.498078 AGGACTCTTTCGGATTCTCACC 59.502 50.000 0.00 0.00 0.00 4.02
158 3337 3.056465 ACAGGACTCTTTCGGATTCTCAC 60.056 47.826 0.00 0.00 0.00 3.51
159 3338 3.165875 ACAGGACTCTTTCGGATTCTCA 58.834 45.455 0.00 0.00 0.00 3.27
160 3339 3.878160 ACAGGACTCTTTCGGATTCTC 57.122 47.619 0.00 0.00 0.00 2.87
161 3340 5.740290 TTAACAGGACTCTTTCGGATTCT 57.260 39.130 0.00 0.00 0.00 2.40
162 3341 5.294552 CCATTAACAGGACTCTTTCGGATTC 59.705 44.000 0.00 0.00 0.00 2.52
166 3345 4.184629 CTCCATTAACAGGACTCTTTCGG 58.815 47.826 0.00 0.00 0.00 4.30
177 3356 3.007940 TGTCCTGGTCACTCCATTAACAG 59.992 47.826 0.00 0.00 46.12 3.16
182 3361 2.269023 TCATGTCCTGGTCACTCCATT 58.731 47.619 0.00 0.00 46.12 3.16
184 3363 1.956869 ATCATGTCCTGGTCACTCCA 58.043 50.000 0.00 0.00 45.01 3.86
208 3387 7.790823 ATTGCTTGAGCTTTTTATGTGTTTT 57.209 28.000 4.44 0.00 42.66 2.43
241 3420 9.907576 CGAAAGCTGTATAGAATGAAGTTAAAG 57.092 33.333 0.00 0.00 0.00 1.85
279 3458 4.568359 CAGTAATCATCTGTTCAACCGAGG 59.432 45.833 0.00 0.00 0.00 4.63
280 3459 4.033358 GCAGTAATCATCTGTTCAACCGAG 59.967 45.833 0.00 0.00 35.60 4.63
283 3462 4.697352 AGTGCAGTAATCATCTGTTCAACC 59.303 41.667 0.00 0.00 35.60 3.77
284 3463 5.869753 AGTGCAGTAATCATCTGTTCAAC 57.130 39.130 0.00 0.00 35.60 3.18
285 3464 6.671190 CAAAGTGCAGTAATCATCTGTTCAA 58.329 36.000 0.00 0.00 35.60 2.69
286 3465 5.335113 GCAAAGTGCAGTAATCATCTGTTCA 60.335 40.000 0.00 0.00 44.26 3.18
316 3610 3.521560 ACCTGTTAGCATCACGTACATG 58.478 45.455 0.00 0.00 0.00 3.21
321 3617 3.000727 GCTAAACCTGTTAGCATCACGT 58.999 45.455 12.12 0.00 44.93 4.49
495 3802 5.474578 TCTGTCCAGAGAACATATATGCC 57.525 43.478 12.79 5.23 32.82 4.40
523 3830 7.672351 TTTTGTATGTACTTTGTTTTCAGCG 57.328 32.000 0.00 0.00 0.00 5.18
634 3944 8.839947 TTGTTAATTTCTGTATGCATGATTCG 57.160 30.769 10.16 0.00 0.00 3.34
661 3971 2.996395 CTGGCCAGCTCACTCCAT 59.004 61.111 22.33 0.00 0.00 3.41
720 4032 0.184451 CCCCCATCCCATCACTTCAG 59.816 60.000 0.00 0.00 0.00 3.02
743 4055 7.762615 CCATCTAACTGCATTTGTTCATTGAAT 59.237 33.333 1.78 0.00 0.00 2.57
795 4107 4.221262 AGGCTTTGAATGCACATGTACAAT 59.779 37.500 2.15 0.00 0.00 2.71
796 4108 3.573538 AGGCTTTGAATGCACATGTACAA 59.426 39.130 2.15 0.85 0.00 2.41
799 4111 2.094597 GCAGGCTTTGAATGCACATGTA 60.095 45.455 0.00 0.00 39.75 2.29
800 4112 1.337447 GCAGGCTTTGAATGCACATGT 60.337 47.619 5.41 0.00 39.75 3.21
819 4132 3.251004 AGAAGAACGTGTTGGAGAAATGC 59.749 43.478 0.00 0.00 0.00 3.56
857 4170 6.126409 ACTTTGGTCACTAGTCCAAAATCAA 58.874 36.000 22.39 7.15 46.96 2.57
860 4173 6.206829 GCTAACTTTGGTCACTAGTCCAAAAT 59.793 38.462 22.39 14.42 46.96 1.82
865 4180 3.007614 TGGCTAACTTTGGTCACTAGTCC 59.992 47.826 0.00 0.00 0.00 3.85
871 4186 4.584327 AATTGTGGCTAACTTTGGTCAC 57.416 40.909 3.31 3.31 43.47 3.67
881 4196 4.020543 GGGTGGATGTTAATTGTGGCTAA 58.979 43.478 0.00 0.00 0.00 3.09
947 4266 2.157863 GTCTTAACGAGTGCTTTGAGGC 59.842 50.000 0.00 0.00 0.00 4.70
957 4276 3.890147 ACCAACTCTCTGTCTTAACGAGT 59.110 43.478 0.00 0.00 36.58 4.18
1161 4486 0.255033 GGTAGGTTCCCGCATCCTTT 59.745 55.000 0.00 0.00 33.34 3.11
1216 4541 4.147321 AGAAGGTGTTCGTAGAAGTGGTA 58.853 43.478 0.00 0.00 45.90 3.25
1239 4564 3.307108 TGGGATGCCACGTGTCGA 61.307 61.111 15.65 0.00 0.00 4.20
1248 4573 2.124151 ATGAAGCCGTGGGATGCC 60.124 61.111 0.00 0.00 0.00 4.40
1303 4628 7.269316 TGAGGTAATTTCTGTATACATGCGAA 58.731 34.615 5.91 4.04 0.00 4.70
1304 4629 6.811954 TGAGGTAATTTCTGTATACATGCGA 58.188 36.000 5.91 0.00 0.00 5.10
1305 4630 7.011016 TGTTGAGGTAATTTCTGTATACATGCG 59.989 37.037 5.91 0.00 0.00 4.73
1306 4631 8.208718 TGTTGAGGTAATTTCTGTATACATGC 57.791 34.615 5.91 0.00 0.00 4.06
1356 4686 8.409371 GTGTTTTTCTTTCTCTGAAAGGAGATT 58.591 33.333 16.79 0.00 41.29 2.40
1357 4687 7.557719 TGTGTTTTTCTTTCTCTGAAAGGAGAT 59.442 33.333 16.79 0.00 41.29 2.75
1358 4688 6.884295 TGTGTTTTTCTTTCTCTGAAAGGAGA 59.116 34.615 16.79 4.33 40.16 3.71
1359 4689 7.088589 TGTGTTTTTCTTTCTCTGAAAGGAG 57.911 36.000 16.79 0.00 35.27 3.69
1360 4690 7.645058 ATGTGTTTTTCTTTCTCTGAAAGGA 57.355 32.000 16.79 8.26 35.27 3.36
1361 4691 8.840321 TCTATGTGTTTTTCTTTCTCTGAAAGG 58.160 33.333 16.79 2.94 35.27 3.11
1376 4706 9.574516 AGACTTGAGGTAATTTCTATGTGTTTT 57.425 29.630 0.00 0.00 0.00 2.43
1377 4707 9.220767 GAGACTTGAGGTAATTTCTATGTGTTT 57.779 33.333 0.00 0.00 0.00 2.83
1378 4708 8.598041 AGAGACTTGAGGTAATTTCTATGTGTT 58.402 33.333 0.00 0.00 0.00 3.32
1379 4709 8.140112 AGAGACTTGAGGTAATTTCTATGTGT 57.860 34.615 0.00 0.00 0.00 3.72
1380 4710 8.474025 AGAGAGACTTGAGGTAATTTCTATGTG 58.526 37.037 0.00 0.00 0.00 3.21
1381 4711 8.602472 AGAGAGACTTGAGGTAATTTCTATGT 57.398 34.615 0.00 0.00 0.00 2.29
1382 4712 8.690884 TGAGAGAGACTTGAGGTAATTTCTATG 58.309 37.037 0.00 0.00 0.00 2.23
1383 4713 8.830915 TGAGAGAGACTTGAGGTAATTTCTAT 57.169 34.615 0.00 0.00 0.00 1.98
1384 4714 8.110271 TCTGAGAGAGACTTGAGGTAATTTCTA 58.890 37.037 0.00 0.00 0.00 2.10
1385 4715 6.951198 TCTGAGAGAGACTTGAGGTAATTTCT 59.049 38.462 0.00 0.00 0.00 2.52
1386 4716 7.164230 TCTGAGAGAGACTTGAGGTAATTTC 57.836 40.000 0.00 0.00 0.00 2.17
1387 4717 7.453126 TCTTCTGAGAGAGACTTGAGGTAATTT 59.547 37.037 0.00 0.00 0.00 1.82
1388 4718 6.951198 TCTTCTGAGAGAGACTTGAGGTAATT 59.049 38.462 0.00 0.00 0.00 1.40
1389 4719 6.489603 TCTTCTGAGAGAGACTTGAGGTAAT 58.510 40.000 0.00 0.00 0.00 1.89
1390 4720 5.882040 TCTTCTGAGAGAGACTTGAGGTAA 58.118 41.667 0.00 0.00 0.00 2.85
1391 4721 5.506730 TCTTCTGAGAGAGACTTGAGGTA 57.493 43.478 0.00 0.00 0.00 3.08
1424 4754 3.369892 CCACAAGCTAGCATACAGAGGTT 60.370 47.826 18.83 0.00 0.00 3.50
1426 4756 2.169352 ACCACAAGCTAGCATACAGAGG 59.831 50.000 18.83 11.22 0.00 3.69
1508 4846 2.680352 ATGTCCTCGGCGTCACCT 60.680 61.111 6.85 0.00 35.61 4.00
1662 5000 2.042639 GGTCTTGGCATGCCCCAT 60.043 61.111 33.44 0.00 34.21 4.00
1963 5301 0.038166 GCAGGTGATGAACTTGGGGA 59.962 55.000 0.00 0.00 36.41 4.81
2175 5513 0.457443 GGCTGGCTAACTTTGGCATC 59.543 55.000 0.12 0.00 39.24 3.91
2230 5569 8.430801 AATATTACTGTCTGAGCTTAGCAAAG 57.569 34.615 7.07 3.28 35.68 2.77
2350 5697 9.338622 GCACCATAGTATACCTTTAAGAACAAT 57.661 33.333 0.00 0.00 0.00 2.71
2351 5698 7.771826 GGCACCATAGTATACCTTTAAGAACAA 59.228 37.037 0.00 0.00 0.00 2.83
2352 5699 7.277396 GGCACCATAGTATACCTTTAAGAACA 58.723 38.462 0.00 0.00 0.00 3.18
2353 5700 6.423001 CGGCACCATAGTATACCTTTAAGAAC 59.577 42.308 0.00 0.00 0.00 3.01
2354 5701 6.518493 CGGCACCATAGTATACCTTTAAGAA 58.482 40.000 0.00 0.00 0.00 2.52
2355 5702 5.510179 GCGGCACCATAGTATACCTTTAAGA 60.510 44.000 0.00 0.00 0.00 2.10
2356 5703 4.689345 GCGGCACCATAGTATACCTTTAAG 59.311 45.833 0.00 0.00 0.00 1.85
2357 5704 4.634199 GCGGCACCATAGTATACCTTTAA 58.366 43.478 0.00 0.00 0.00 1.52
2358 5705 3.305539 CGCGGCACCATAGTATACCTTTA 60.306 47.826 0.00 0.00 0.00 1.85
2359 5706 2.547218 CGCGGCACCATAGTATACCTTT 60.547 50.000 0.00 0.00 0.00 3.11
2360 5707 1.000506 CGCGGCACCATAGTATACCTT 59.999 52.381 0.00 0.00 0.00 3.50
2361 5708 0.601558 CGCGGCACCATAGTATACCT 59.398 55.000 0.00 0.00 0.00 3.08
2362 5709 1.012486 GCGCGGCACCATAGTATACC 61.012 60.000 8.83 0.00 0.00 2.73
2363 5710 0.038526 AGCGCGGCACCATAGTATAC 60.039 55.000 8.83 0.00 0.00 1.47
2364 5711 0.038618 CAGCGCGGCACCATAGTATA 60.039 55.000 8.83 0.00 0.00 1.47
2365 5712 1.300931 CAGCGCGGCACCATAGTAT 60.301 57.895 8.83 0.00 0.00 2.12
2366 5713 2.106131 CAGCGCGGCACCATAGTA 59.894 61.111 8.83 0.00 0.00 1.82
2367 5714 4.082523 ACAGCGCGGCACCATAGT 62.083 61.111 8.83 0.00 0.00 2.12
2368 5715 3.566853 CACAGCGCGGCACCATAG 61.567 66.667 8.83 0.00 0.00 2.23
2369 5716 4.075854 TCACAGCGCGGCACCATA 62.076 61.111 8.83 0.00 0.00 2.74
2375 5722 4.819761 TCATCCTCACAGCGCGGC 62.820 66.667 8.83 0.00 0.00 6.53
2376 5723 1.091771 ATTTCATCCTCACAGCGCGG 61.092 55.000 8.83 5.83 0.00 6.46
2377 5724 1.570813 TATTTCATCCTCACAGCGCG 58.429 50.000 0.00 0.00 0.00 6.86
2378 5725 4.558538 AAATATTTCATCCTCACAGCGC 57.441 40.909 0.00 0.00 0.00 5.92
2379 5726 6.369059 AGAAAATATTTCATCCTCACAGCG 57.631 37.500 0.10 0.00 0.00 5.18
2380 5727 8.295288 CCATAGAAAATATTTCATCCTCACAGC 58.705 37.037 0.10 0.00 0.00 4.40
2381 5728 9.565090 TCCATAGAAAATATTTCATCCTCACAG 57.435 33.333 0.10 0.00 0.00 3.66
2382 5729 9.342308 GTCCATAGAAAATATTTCATCCTCACA 57.658 33.333 0.10 0.00 0.00 3.58
2383 5730 9.566432 AGTCCATAGAAAATATTTCATCCTCAC 57.434 33.333 0.10 0.00 0.00 3.51
2404 5751 9.542462 CCATTAAAGTCGAATAAATCTAGTCCA 57.458 33.333 0.00 0.00 0.00 4.02
2405 5752 9.760077 TCCATTAAAGTCGAATAAATCTAGTCC 57.240 33.333 0.00 0.00 0.00 3.85
2438 5785 8.999431 GGCATAGATTTATTCGACTTTAATGGA 58.001 33.333 0.00 0.00 0.00 3.41
2439 5786 8.237267 GGGCATAGATTTATTCGACTTTAATGG 58.763 37.037 0.00 0.00 0.00 3.16
2440 5787 8.783093 TGGGCATAGATTTATTCGACTTTAATG 58.217 33.333 0.00 0.00 0.00 1.90
2441 5788 8.918202 TGGGCATAGATTTATTCGACTTTAAT 57.082 30.769 0.00 0.00 0.00 1.40
2442 5789 8.740123 TTGGGCATAGATTTATTCGACTTTAA 57.260 30.769 0.00 0.00 0.00 1.52
2443 5790 8.740123 TTTGGGCATAGATTTATTCGACTTTA 57.260 30.769 0.00 0.00 0.00 1.85
2444 5791 7.639113 TTTGGGCATAGATTTATTCGACTTT 57.361 32.000 0.00 0.00 0.00 2.66
2445 5792 7.639113 TTTTGGGCATAGATTTATTCGACTT 57.361 32.000 0.00 0.00 0.00 3.01
2446 5793 7.823745 ATTTTGGGCATAGATTTATTCGACT 57.176 32.000 0.00 0.00 0.00 4.18
2449 5796 9.357652 CCATTATTTTGGGCATAGATTTATTCG 57.642 33.333 0.00 0.00 32.80 3.34
2464 5811 4.806640 AAGTCTGTGCCCATTATTTTGG 57.193 40.909 0.00 0.00 36.46 3.28
2465 5812 5.865552 CAGAAAGTCTGTGCCCATTATTTTG 59.134 40.000 0.00 0.00 39.58 2.44
2466 5813 5.567423 GCAGAAAGTCTGTGCCCATTATTTT 60.567 40.000 7.08 0.00 45.94 1.82
2467 5814 4.082026 GCAGAAAGTCTGTGCCCATTATTT 60.082 41.667 7.08 0.00 45.94 1.40
2468 5815 3.445096 GCAGAAAGTCTGTGCCCATTATT 59.555 43.478 7.08 0.00 45.94 1.40
2469 5816 3.019564 GCAGAAAGTCTGTGCCCATTAT 58.980 45.455 7.08 0.00 45.94 1.28
2470 5817 2.436417 GCAGAAAGTCTGTGCCCATTA 58.564 47.619 7.08 0.00 45.94 1.90
2471 5818 1.251251 GCAGAAAGTCTGTGCCCATT 58.749 50.000 7.08 0.00 45.94 3.16
2472 5819 2.952714 GCAGAAAGTCTGTGCCCAT 58.047 52.632 7.08 0.00 45.94 4.00
2473 5820 4.481195 GCAGAAAGTCTGTGCCCA 57.519 55.556 7.08 0.00 45.94 5.36
2476 5823 1.973812 GGGGGCAGAAAGTCTGTGC 60.974 63.158 7.08 0.00 45.94 4.57
2477 5824 0.178992 TTGGGGGCAGAAAGTCTGTG 60.179 55.000 7.08 0.00 45.94 3.66
2478 5825 0.555769 TTTGGGGGCAGAAAGTCTGT 59.444 50.000 7.08 0.00 45.94 3.41
2479 5826 0.961753 GTTTGGGGGCAGAAAGTCTG 59.038 55.000 0.72 0.72 46.90 3.51
2480 5827 0.853530 AGTTTGGGGGCAGAAAGTCT 59.146 50.000 0.00 0.00 0.00 3.24
2481 5828 1.248486 GAGTTTGGGGGCAGAAAGTC 58.752 55.000 0.00 0.00 0.00 3.01
2482 5829 0.555769 TGAGTTTGGGGGCAGAAAGT 59.444 50.000 0.00 0.00 0.00 2.66
2483 5830 1.703411 TTGAGTTTGGGGGCAGAAAG 58.297 50.000 0.00 0.00 0.00 2.62
2484 5831 2.166907 TTTGAGTTTGGGGGCAGAAA 57.833 45.000 0.00 0.00 0.00 2.52
2485 5832 1.969923 CATTTGAGTTTGGGGGCAGAA 59.030 47.619 0.00 0.00 0.00 3.02
2486 5833 1.631405 CATTTGAGTTTGGGGGCAGA 58.369 50.000 0.00 0.00 0.00 4.26
2487 5834 0.037046 GCATTTGAGTTTGGGGGCAG 60.037 55.000 0.00 0.00 0.00 4.85
2488 5835 0.471591 AGCATTTGAGTTTGGGGGCA 60.472 50.000 0.00 0.00 0.00 5.36
2489 5836 0.247460 GAGCATTTGAGTTTGGGGGC 59.753 55.000 0.00 0.00 0.00 5.80
2490 5837 1.273327 GTGAGCATTTGAGTTTGGGGG 59.727 52.381 0.00 0.00 0.00 5.40
2491 5838 1.273327 GGTGAGCATTTGAGTTTGGGG 59.727 52.381 0.00 0.00 0.00 4.96
2492 5839 1.273327 GGGTGAGCATTTGAGTTTGGG 59.727 52.381 0.00 0.00 0.00 4.12
2493 5840 1.962807 TGGGTGAGCATTTGAGTTTGG 59.037 47.619 0.00 0.00 0.00 3.28
2494 5841 3.256383 TCATGGGTGAGCATTTGAGTTTG 59.744 43.478 0.00 0.00 0.00 2.93
2495 5842 3.499338 TCATGGGTGAGCATTTGAGTTT 58.501 40.909 0.00 0.00 0.00 2.66
2496 5843 3.159213 TCATGGGTGAGCATTTGAGTT 57.841 42.857 0.00 0.00 0.00 3.01
2497 5844 2.885135 TCATGGGTGAGCATTTGAGT 57.115 45.000 0.00 0.00 0.00 3.41
2498 5845 3.284617 TGATCATGGGTGAGCATTTGAG 58.715 45.455 0.00 0.00 45.14 3.02
2499 5846 3.369242 TGATCATGGGTGAGCATTTGA 57.631 42.857 0.00 0.00 45.14 2.69
2505 5852 5.841957 AATTTTACTGATCATGGGTGAGC 57.158 39.130 0.00 0.00 41.09 4.26
2558 5905 8.316640 ACTTTGCAATGTTTGTTGTAGAAAAA 57.683 26.923 11.92 0.00 0.00 1.94
2559 5906 7.897575 ACTTTGCAATGTTTGTTGTAGAAAA 57.102 28.000 11.92 0.00 0.00 2.29
2560 5907 7.386299 ACAACTTTGCAATGTTTGTTGTAGAAA 59.614 29.630 23.74 0.00 43.74 2.52
2561 5908 6.870965 ACAACTTTGCAATGTTTGTTGTAGAA 59.129 30.769 23.74 0.00 43.74 2.10
2562 5909 6.393990 ACAACTTTGCAATGTTTGTTGTAGA 58.606 32.000 23.74 0.00 43.74 2.59
2563 5910 6.645700 ACAACTTTGCAATGTTTGTTGTAG 57.354 33.333 23.74 14.89 43.74 2.74
2565 5912 7.608308 AATACAACTTTGCAATGTTTGTTGT 57.392 28.000 23.74 24.07 46.11 3.32
2575 5922 9.278978 TGTCTCAACTATAATACAACTTTGCAA 57.721 29.630 0.00 0.00 0.00 4.08
2576 5923 8.717821 GTGTCTCAACTATAATACAACTTTGCA 58.282 33.333 0.00 0.00 0.00 4.08
2577 5924 8.936864 AGTGTCTCAACTATAATACAACTTTGC 58.063 33.333 0.00 0.00 0.00 3.68
2588 5935 9.444600 GTCCCAAAATAAGTGTCTCAACTATAA 57.555 33.333 0.00 0.00 0.00 0.98
2589 5936 7.762615 CGTCCCAAAATAAGTGTCTCAACTATA 59.237 37.037 0.00 0.00 0.00 1.31
2590 5937 6.594159 CGTCCCAAAATAAGTGTCTCAACTAT 59.406 38.462 0.00 0.00 0.00 2.12
2591 5938 5.929992 CGTCCCAAAATAAGTGTCTCAACTA 59.070 40.000 0.00 0.00 0.00 2.24
2592 5939 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2593 5940 4.753107 TCGTCCCAAAATAAGTGTCTCAAC 59.247 41.667 0.00 0.00 0.00 3.18
2594 5941 4.963373 TCGTCCCAAAATAAGTGTCTCAA 58.037 39.130 0.00 0.00 0.00 3.02
2595 5942 4.610605 TCGTCCCAAAATAAGTGTCTCA 57.389 40.909 0.00 0.00 0.00 3.27
2596 5943 4.392138 CCTTCGTCCCAAAATAAGTGTCTC 59.608 45.833 0.00 0.00 0.00 3.36
2597 5944 4.041198 TCCTTCGTCCCAAAATAAGTGTCT 59.959 41.667 0.00 0.00 0.00 3.41
2598 5945 4.320870 TCCTTCGTCCCAAAATAAGTGTC 58.679 43.478 0.00 0.00 0.00 3.67
2599 5946 4.360951 TCCTTCGTCCCAAAATAAGTGT 57.639 40.909 0.00 0.00 0.00 3.55
2600 5947 4.760204 ACTTCCTTCGTCCCAAAATAAGTG 59.240 41.667 0.00 0.00 0.00 3.16
2601 5948 4.981812 ACTTCCTTCGTCCCAAAATAAGT 58.018 39.130 0.00 0.00 0.00 2.24
2602 5949 5.935789 TGTACTTCCTTCGTCCCAAAATAAG 59.064 40.000 0.00 0.00 0.00 1.73
2603 5950 5.867330 TGTACTTCCTTCGTCCCAAAATAA 58.133 37.500 0.00 0.00 0.00 1.40
2604 5951 5.486735 TGTACTTCCTTCGTCCCAAAATA 57.513 39.130 0.00 0.00 0.00 1.40
2605 5952 4.360951 TGTACTTCCTTCGTCCCAAAAT 57.639 40.909 0.00 0.00 0.00 1.82
2606 5953 3.842007 TGTACTTCCTTCGTCCCAAAA 57.158 42.857 0.00 0.00 0.00 2.44
2607 5954 3.842007 TTGTACTTCCTTCGTCCCAAA 57.158 42.857 0.00 0.00 0.00 3.28
2608 5955 3.842007 TTTGTACTTCCTTCGTCCCAA 57.158 42.857 0.00 0.00 0.00 4.12
2609 5956 4.360951 AATTTGTACTTCCTTCGTCCCA 57.639 40.909 0.00 0.00 0.00 4.37
2610 5957 6.997239 AATAATTTGTACTTCCTTCGTCCC 57.003 37.500 0.00 0.00 0.00 4.46
2611 5958 9.321562 TCATAATAATTTGTACTTCCTTCGTCC 57.678 33.333 0.00 0.00 0.00 4.79
2674 6021 9.994432 CTTTCAAAAATAGTAGAAGCATCGATT 57.006 29.630 0.00 0.00 0.00 3.34
2675 6022 8.125448 GCTTTCAAAAATAGTAGAAGCATCGAT 58.875 33.333 0.00 0.00 0.00 3.59
2676 6023 7.119116 TGCTTTCAAAAATAGTAGAAGCATCGA 59.881 33.333 3.98 0.00 0.00 3.59
2677 6024 7.243487 TGCTTTCAAAAATAGTAGAAGCATCG 58.757 34.615 3.98 0.00 0.00 3.84
2678 6025 9.578439 AATGCTTTCAAAAATAGTAGAAGCATC 57.422 29.630 17.63 0.00 35.67 3.91
2679 6026 9.933723 AAATGCTTTCAAAAATAGTAGAAGCAT 57.066 25.926 13.16 13.16 36.92 3.79
2680 6027 9.762933 AAAATGCTTTCAAAAATAGTAGAAGCA 57.237 25.926 9.86 9.86 32.78 3.91
2683 6030 9.487790 CCCAAAATGCTTTCAAAAATAGTAGAA 57.512 29.630 0.00 0.00 0.00 2.10
2684 6031 8.646900 ACCCAAAATGCTTTCAAAAATAGTAGA 58.353 29.630 0.00 0.00 0.00 2.59
2685 6032 8.831715 ACCCAAAATGCTTTCAAAAATAGTAG 57.168 30.769 0.00 0.00 0.00 2.57
2687 6034 9.620259 TTTACCCAAAATGCTTTCAAAAATAGT 57.380 25.926 0.00 0.00 0.00 2.12
2722 6069 8.686334 GGAAAATTATTCCTAATGCTCTGTGAA 58.314 33.333 10.43 0.00 35.73 3.18
2723 6070 8.055181 AGGAAAATTATTCCTAATGCTCTGTGA 58.945 33.333 15.89 0.00 46.48 3.58
2724 6071 8.230472 AGGAAAATTATTCCTAATGCTCTGTG 57.770 34.615 15.89 0.00 46.48 3.66
2747 6094 5.824624 ACATATGTGCAAGTTATCCTGAAGG 59.175 40.000 7.78 0.00 0.00 3.46
2748 6095 6.932356 ACATATGTGCAAGTTATCCTGAAG 57.068 37.500 7.78 0.00 0.00 3.02
2758 6105 9.394767 TGATGAACTTTATACATATGTGCAAGT 57.605 29.630 18.81 17.82 0.00 3.16
2819 6166 9.732130 CCCCCATAAACATTAAAATCAAAGAAA 57.268 29.630 0.00 0.00 0.00 2.52
2820 6167 9.105844 TCCCCCATAAACATTAAAATCAAAGAA 57.894 29.630 0.00 0.00 0.00 2.52
2821 6168 8.671987 TCCCCCATAAACATTAAAATCAAAGA 57.328 30.769 0.00 0.00 0.00 2.52
2822 6169 9.161629 GTTCCCCCATAAACATTAAAATCAAAG 57.838 33.333 0.00 0.00 0.00 2.77
2823 6170 8.660435 TGTTCCCCCATAAACATTAAAATCAAA 58.340 29.630 0.00 0.00 30.73 2.69
2824 6171 8.097662 GTGTTCCCCCATAAACATTAAAATCAA 58.902 33.333 0.00 0.00 37.67 2.57
2825 6172 7.577807 CGTGTTCCCCCATAAACATTAAAATCA 60.578 37.037 0.00 0.00 37.67 2.57
2826 6173 6.754675 CGTGTTCCCCCATAAACATTAAAATC 59.245 38.462 0.00 0.00 37.67 2.17
2827 6174 6.211785 ACGTGTTCCCCCATAAACATTAAAAT 59.788 34.615 0.00 0.00 37.67 1.82
2828 6175 5.539193 ACGTGTTCCCCCATAAACATTAAAA 59.461 36.000 0.00 0.00 37.67 1.52
2829 6176 5.078256 ACGTGTTCCCCCATAAACATTAAA 58.922 37.500 0.00 0.00 37.67 1.52
2830 6177 4.664392 ACGTGTTCCCCCATAAACATTAA 58.336 39.130 0.00 0.00 37.67 1.40
2831 6178 4.304048 ACGTGTTCCCCCATAAACATTA 57.696 40.909 0.00 0.00 37.67 1.90
2832 6179 3.163616 ACGTGTTCCCCCATAAACATT 57.836 42.857 0.00 0.00 37.67 2.71
2833 6180 2.891191 ACGTGTTCCCCCATAAACAT 57.109 45.000 0.00 0.00 37.67 2.71
2834 6181 2.660670 AACGTGTTCCCCCATAAACA 57.339 45.000 0.00 0.00 33.18 2.83
2835 6182 5.648178 ATAAAACGTGTTCCCCCATAAAC 57.352 39.130 0.00 0.00 0.00 2.01
2836 6183 7.173722 TCTTATAAAACGTGTTCCCCCATAAA 58.826 34.615 0.00 0.00 0.00 1.40
2837 6184 6.719301 TCTTATAAAACGTGTTCCCCCATAA 58.281 36.000 0.00 0.00 0.00 1.90
2838 6185 6.310764 TCTTATAAAACGTGTTCCCCCATA 57.689 37.500 0.00 0.00 0.00 2.74
2839 6186 5.182169 TCTTATAAAACGTGTTCCCCCAT 57.818 39.130 0.00 0.00 0.00 4.00
2840 6187 4.637387 TCTTATAAAACGTGTTCCCCCA 57.363 40.909 0.00 0.00 0.00 4.96
2841 6188 4.945543 ACATCTTATAAAACGTGTTCCCCC 59.054 41.667 0.00 0.00 0.00 5.40
2842 6189 6.505044 AACATCTTATAAAACGTGTTCCCC 57.495 37.500 0.00 0.00 0.00 4.81
2843 6190 6.804783 CCAAACATCTTATAAAACGTGTTCCC 59.195 38.462 0.00 0.00 0.00 3.97
2844 6191 6.307077 GCCAAACATCTTATAAAACGTGTTCC 59.693 38.462 0.00 0.00 0.00 3.62
2845 6192 6.858993 TGCCAAACATCTTATAAAACGTGTTC 59.141 34.615 0.00 0.00 0.00 3.18
2846 6193 6.740110 TGCCAAACATCTTATAAAACGTGTT 58.260 32.000 0.00 0.00 0.00 3.32
2847 6194 6.320494 TGCCAAACATCTTATAAAACGTGT 57.680 33.333 0.00 0.00 0.00 4.49
2848 6195 8.181573 AGTATGCCAAACATCTTATAAAACGTG 58.818 33.333 0.00 0.00 40.38 4.49
2849 6196 8.276252 AGTATGCCAAACATCTTATAAAACGT 57.724 30.769 0.00 0.00 40.38 3.99
2850 6197 9.567848 AAAGTATGCCAAACATCTTATAAAACG 57.432 29.630 0.00 0.00 40.38 3.60
2857 6204 9.515226 AGTAAGAAAAGTATGCCAAACATCTTA 57.485 29.630 0.00 0.00 40.38 2.10
2858 6205 8.409358 AGTAAGAAAAGTATGCCAAACATCTT 57.591 30.769 0.00 0.00 40.38 2.40
2859 6206 8.409358 AAGTAAGAAAAGTATGCCAAACATCT 57.591 30.769 0.00 0.00 40.38 2.90
2860 6207 8.915654 CAAAGTAAGAAAAGTATGCCAAACATC 58.084 33.333 0.00 0.00 40.38 3.06
2861 6208 8.421002 ACAAAGTAAGAAAAGTATGCCAAACAT 58.579 29.630 0.00 0.00 43.18 2.71
2862 6209 7.777095 ACAAAGTAAGAAAAGTATGCCAAACA 58.223 30.769 0.00 0.00 0.00 2.83
2863 6210 8.135529 AGACAAAGTAAGAAAAGTATGCCAAAC 58.864 33.333 0.00 0.00 0.00 2.93
2864 6211 8.232913 AGACAAAGTAAGAAAAGTATGCCAAA 57.767 30.769 0.00 0.00 0.00 3.28
2865 6212 7.817418 AGACAAAGTAAGAAAAGTATGCCAA 57.183 32.000 0.00 0.00 0.00 4.52
2866 6213 9.515226 AATAGACAAAGTAAGAAAAGTATGCCA 57.485 29.630 0.00 0.00 0.00 4.92
2949 6296 9.415008 TGCATATAACCAACCTTATTACATTGT 57.585 29.630 0.00 0.00 0.00 2.71
2952 6299 8.946085 CGATGCATATAACCAACCTTATTACAT 58.054 33.333 0.00 0.00 0.00 2.29
2953 6300 7.934665 ACGATGCATATAACCAACCTTATTACA 59.065 33.333 0.00 0.00 0.00 2.41
2954 6301 8.319143 ACGATGCATATAACCAACCTTATTAC 57.681 34.615 0.00 0.00 0.00 1.89
2955 6302 9.426837 GTACGATGCATATAACCAACCTTATTA 57.573 33.333 0.00 0.00 0.00 0.98
2956 6303 7.117236 CGTACGATGCATATAACCAACCTTATT 59.883 37.037 10.44 0.00 0.00 1.40
2957 6304 6.588756 CGTACGATGCATATAACCAACCTTAT 59.411 38.462 10.44 0.00 0.00 1.73
2958 6305 5.921976 CGTACGATGCATATAACCAACCTTA 59.078 40.000 10.44 0.00 0.00 2.69
2959 6306 4.748102 CGTACGATGCATATAACCAACCTT 59.252 41.667 10.44 0.00 0.00 3.50
2960 6307 4.038282 TCGTACGATGCATATAACCAACCT 59.962 41.667 15.28 0.00 0.00 3.50
2961 6308 4.300803 TCGTACGATGCATATAACCAACC 58.699 43.478 15.28 0.00 0.00 3.77
2962 6309 5.843442 CATCGTACGATGCATATAACCAAC 58.157 41.667 37.02 0.00 44.27 3.77
2975 6322 4.237724 CCATGAACTATGCATCGTACGAT 58.762 43.478 24.66 24.66 35.37 3.73
2976 6323 3.552068 CCCATGAACTATGCATCGTACGA 60.552 47.826 21.93 21.93 35.37 3.43
2977 6324 2.731451 CCCATGAACTATGCATCGTACG 59.269 50.000 9.53 9.53 35.37 3.67
2978 6325 3.728845 ACCCATGAACTATGCATCGTAC 58.271 45.455 0.19 0.00 35.37 3.67
2979 6326 5.738619 ATACCCATGAACTATGCATCGTA 57.261 39.130 0.19 0.00 35.37 3.43
2980 6327 4.623932 ATACCCATGAACTATGCATCGT 57.376 40.909 0.19 0.00 35.37 3.73
2981 6328 7.173218 AGTTTTATACCCATGAACTATGCATCG 59.827 37.037 0.19 0.00 35.37 3.84
2982 6329 8.396272 AGTTTTATACCCATGAACTATGCATC 57.604 34.615 0.19 0.00 35.37 3.91
2983 6330 8.766994 AAGTTTTATACCCATGAACTATGCAT 57.233 30.769 3.79 3.79 35.37 3.96
2984 6331 8.588290 AAAGTTTTATACCCATGAACTATGCA 57.412 30.769 0.00 0.00 35.37 3.96
2985 6332 9.869757 AAAAAGTTTTATACCCATGAACTATGC 57.130 29.630 0.24 0.00 35.37 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.