Multiple sequence alignment - TraesCS6B01G172500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G172500 chr6B 100.000 4222 0 0 1 4222 185017418 185013197 0.000000e+00 7797
1 TraesCS6B01G172500 chr6D 93.388 3509 151 22 763 4222 100939751 100936275 0.000000e+00 5120
2 TraesCS6B01G172500 chr6D 89.556 383 26 4 64 432 100940554 100940172 1.370000e-129 473
3 TraesCS6B01G172500 chr6A 93.492 2597 133 20 763 3350 121652944 121650375 0.000000e+00 3827
4 TraesCS6B01G172500 chr6A 93.375 483 27 3 3350 3832 121643789 121643312 0.000000e+00 710
5 TraesCS6B01G172500 chr6A 89.583 336 25 6 102 428 121654021 121653687 6.530000e-113 418
6 TraesCS6B01G172500 chr6A 92.887 239 16 1 529 766 121653230 121652992 3.120000e-91 346
7 TraesCS6B01G172500 chr6A 91.667 216 9 3 4007 4222 121643231 121643025 1.490000e-74 291
8 TraesCS6B01G172500 chr1B 80.097 824 113 17 2363 3180 56133677 56132899 2.200000e-157 566
9 TraesCS6B01G172500 chr1B 82.312 571 75 10 1901 2450 56134265 56133700 4.940000e-129 472


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G172500 chr6B 185013197 185017418 4221 True 7797.000000 7797 100.000000 1 4222 1 chr6B.!!$R1 4221
1 TraesCS6B01G172500 chr6D 100936275 100940554 4279 True 2796.500000 5120 91.472000 64 4222 2 chr6D.!!$R1 4158
2 TraesCS6B01G172500 chr6A 121650375 121654021 3646 True 1530.333333 3827 91.987333 102 3350 3 chr6A.!!$R2 3248
3 TraesCS6B01G172500 chr6A 121643025 121643789 764 True 500.500000 710 92.521000 3350 4222 2 chr6A.!!$R1 872
4 TraesCS6B01G172500 chr1B 56132899 56134265 1366 True 519.000000 566 81.204500 1901 3180 2 chr1B.!!$R1 1279

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
433 455 0.179124 GCATCTGTCGAGACCCACTC 60.179 60.0 0.34 0.0 41.79 3.51 F
1187 1682 0.032952 CCGAGGTCTCCGACAACAAA 59.967 55.0 0.00 0.0 33.68 2.83 F
2309 2825 0.246635 ACAGCGAAGTAACCGATGCT 59.753 50.0 0.00 0.0 45.91 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1886 2381 0.109597 CAATGTTCTTGGCGGTCTGC 60.110 55.0 0.00 0.0 45.38 4.26 R
2370 2992 0.254178 CTGGGGGTCTCATCTGTTGG 59.746 60.0 0.00 0.0 0.00 3.77 R
3703 4365 0.035630 AGTCAGATGACCTGCCAAGC 60.036 55.0 9.31 0.0 45.85 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.004348 TCGAGCTGAGAGGGACAC 57.996 61.111 0.00 0.00 0.00 3.67
23 24 1.380689 TCGAGCTGAGAGGGACACT 59.619 57.895 0.00 0.00 0.00 3.55
24 25 0.251386 TCGAGCTGAGAGGGACACTT 60.251 55.000 0.00 0.00 0.00 3.16
25 26 0.605589 CGAGCTGAGAGGGACACTTT 59.394 55.000 0.00 0.00 0.00 2.66
26 27 1.403514 CGAGCTGAGAGGGACACTTTC 60.404 57.143 0.00 0.00 0.00 2.62
27 28 0.605589 AGCTGAGAGGGACACTTTCG 59.394 55.000 0.00 0.00 33.16 3.46
28 29 0.603569 GCTGAGAGGGACACTTTCGA 59.396 55.000 0.00 0.00 33.16 3.71
29 30 1.403514 GCTGAGAGGGACACTTTCGAG 60.404 57.143 0.00 0.00 33.16 4.04
30 31 2.163509 CTGAGAGGGACACTTTCGAGA 58.836 52.381 0.00 0.00 33.16 4.04
31 32 2.558795 CTGAGAGGGACACTTTCGAGAA 59.441 50.000 0.00 0.00 33.16 2.87
32 33 3.165875 TGAGAGGGACACTTTCGAGAAT 58.834 45.455 0.00 0.00 33.16 2.40
33 34 4.341487 TGAGAGGGACACTTTCGAGAATA 58.659 43.478 0.00 0.00 33.16 1.75
34 35 4.956700 TGAGAGGGACACTTTCGAGAATAT 59.043 41.667 0.00 0.00 33.16 1.28
35 36 5.163509 TGAGAGGGACACTTTCGAGAATATG 60.164 44.000 0.00 0.00 33.16 1.78
36 37 4.712337 AGAGGGACACTTTCGAGAATATGT 59.288 41.667 3.18 3.18 0.00 2.29
37 38 5.892119 AGAGGGACACTTTCGAGAATATGTA 59.108 40.000 3.46 0.00 0.00 2.29
38 39 6.551601 AGAGGGACACTTTCGAGAATATGTAT 59.448 38.462 3.46 0.00 0.00 2.29
39 40 6.516718 AGGGACACTTTCGAGAATATGTATG 58.483 40.000 3.46 0.00 0.00 2.39
40 41 5.177696 GGGACACTTTCGAGAATATGTATGC 59.822 44.000 3.46 0.00 0.00 3.14
41 42 5.986135 GGACACTTTCGAGAATATGTATGCT 59.014 40.000 3.46 0.00 0.00 3.79
42 43 7.145985 GGACACTTTCGAGAATATGTATGCTA 58.854 38.462 3.46 0.00 0.00 3.49
43 44 7.815068 GGACACTTTCGAGAATATGTATGCTAT 59.185 37.037 3.46 0.00 0.00 2.97
44 45 9.197694 GACACTTTCGAGAATATGTATGCTATT 57.802 33.333 3.46 0.00 0.00 1.73
45 46 9.547753 ACACTTTCGAGAATATGTATGCTATTT 57.452 29.630 2.00 0.00 0.00 1.40
46 47 9.803130 CACTTTCGAGAATATGTATGCTATTTG 57.197 33.333 0.00 0.00 0.00 2.32
47 48 8.499162 ACTTTCGAGAATATGTATGCTATTTGC 58.501 33.333 0.00 0.00 43.25 3.68
48 49 8.607441 TTTCGAGAATATGTATGCTATTTGCT 57.393 30.769 0.00 0.00 43.37 3.91
49 50 9.705290 TTTCGAGAATATGTATGCTATTTGCTA 57.295 29.630 0.00 0.00 43.37 3.49
50 51 9.705290 TTCGAGAATATGTATGCTATTTGCTAA 57.295 29.630 0.00 0.00 43.37 3.09
51 52 9.705290 TCGAGAATATGTATGCTATTTGCTAAA 57.295 29.630 0.00 0.00 43.37 1.85
60 61 9.920133 TGTATGCTATTTGCTAAATTTTGTCAA 57.080 25.926 0.00 1.08 43.37 3.18
62 63 7.650834 TGCTATTTGCTAAATTTTGTCAACC 57.349 32.000 0.00 0.00 43.37 3.77
68 69 5.229423 TGCTAAATTTTGTCAACCATGAGC 58.771 37.500 0.00 0.00 35.88 4.26
81 82 5.359860 TCAACCATGAGCGTAGAATAGAAGA 59.640 40.000 0.00 0.00 0.00 2.87
82 83 5.189659 ACCATGAGCGTAGAATAGAAGAC 57.810 43.478 0.00 0.00 0.00 3.01
95 96 1.164041 AGAAGACGTTTGCCGGTTGG 61.164 55.000 1.90 0.00 42.24 3.77
96 97 1.441732 GAAGACGTTTGCCGGTTGGT 61.442 55.000 1.90 0.00 42.24 3.67
100 101 1.081509 CGTTTGCCGGTTGGTCATG 60.082 57.895 1.90 0.00 37.67 3.07
186 193 0.322997 TGTAATTTCCACGCCCCCAG 60.323 55.000 0.00 0.00 0.00 4.45
199 206 2.233431 CGCCCCCAGATTTCAAAATTCA 59.767 45.455 0.00 0.00 0.00 2.57
362 377 2.882324 CGTGAGAAAAGTAGGAGGCTC 58.118 52.381 5.78 5.78 0.00 4.70
366 381 1.909986 AGAAAAGTAGGAGGCTCACCC 59.090 52.381 17.69 0.00 36.11 4.61
368 383 0.914902 AAAGTAGGAGGCTCACCCCC 60.915 60.000 17.69 0.00 36.11 5.40
429 451 2.105128 CCGCATCTGTCGAGACCC 59.895 66.667 0.34 0.00 0.00 4.46
430 452 2.710902 CCGCATCTGTCGAGACCCA 61.711 63.158 0.34 0.00 0.00 4.51
431 453 1.517257 CGCATCTGTCGAGACCCAC 60.517 63.158 0.34 0.00 0.00 4.61
432 454 1.893786 GCATCTGTCGAGACCCACT 59.106 57.895 0.34 0.00 0.00 4.00
433 455 0.179124 GCATCTGTCGAGACCCACTC 60.179 60.000 0.34 0.00 41.79 3.51
434 456 1.177401 CATCTGTCGAGACCCACTCA 58.823 55.000 0.34 0.00 45.14 3.41
435 457 1.753649 CATCTGTCGAGACCCACTCAT 59.246 52.381 0.34 0.00 45.14 2.90
436 458 2.801077 TCTGTCGAGACCCACTCATA 57.199 50.000 0.34 0.00 45.14 2.15
437 459 3.081710 TCTGTCGAGACCCACTCATAA 57.918 47.619 0.34 0.00 45.14 1.90
438 460 2.753452 TCTGTCGAGACCCACTCATAAC 59.247 50.000 0.34 0.00 45.14 1.89
439 461 2.492088 CTGTCGAGACCCACTCATAACA 59.508 50.000 0.34 0.00 45.14 2.41
440 462 3.096852 TGTCGAGACCCACTCATAACAT 58.903 45.455 0.34 0.00 45.14 2.71
441 463 3.513912 TGTCGAGACCCACTCATAACATT 59.486 43.478 0.34 0.00 45.14 2.71
442 464 4.020573 TGTCGAGACCCACTCATAACATTT 60.021 41.667 0.34 0.00 45.14 2.32
443 465 4.330074 GTCGAGACCCACTCATAACATTTG 59.670 45.833 0.00 0.00 45.14 2.32
444 466 4.020573 TCGAGACCCACTCATAACATTTGT 60.021 41.667 0.00 0.00 45.14 2.83
445 467 4.330074 CGAGACCCACTCATAACATTTGTC 59.670 45.833 0.00 0.00 45.14 3.18
446 468 5.241403 AGACCCACTCATAACATTTGTCA 57.759 39.130 0.00 0.00 0.00 3.58
447 469 5.819991 AGACCCACTCATAACATTTGTCAT 58.180 37.500 0.00 0.00 0.00 3.06
448 470 5.882557 AGACCCACTCATAACATTTGTCATC 59.117 40.000 0.00 0.00 0.00 2.92
449 471 5.819991 ACCCACTCATAACATTTGTCATCT 58.180 37.500 0.00 0.00 0.00 2.90
450 472 6.248433 ACCCACTCATAACATTTGTCATCTT 58.752 36.000 0.00 0.00 0.00 2.40
451 473 6.375455 ACCCACTCATAACATTTGTCATCTTC 59.625 38.462 0.00 0.00 0.00 2.87
452 474 6.183360 CCCACTCATAACATTTGTCATCTTCC 60.183 42.308 0.00 0.00 0.00 3.46
453 475 6.600822 CCACTCATAACATTTGTCATCTTCCT 59.399 38.462 0.00 0.00 0.00 3.36
454 476 7.414873 CCACTCATAACATTTGTCATCTTCCTG 60.415 40.741 0.00 0.00 0.00 3.86
455 477 6.094603 ACTCATAACATTTGTCATCTTCCTGC 59.905 38.462 0.00 0.00 0.00 4.85
456 478 3.837213 AACATTTGTCATCTTCCTGCG 57.163 42.857 0.00 0.00 0.00 5.18
457 479 3.057969 ACATTTGTCATCTTCCTGCGA 57.942 42.857 0.00 0.00 0.00 5.10
458 480 2.744202 ACATTTGTCATCTTCCTGCGAC 59.256 45.455 0.00 0.00 0.00 5.19
459 481 2.542020 TTTGTCATCTTCCTGCGACA 57.458 45.000 0.00 0.00 36.63 4.35
478 500 1.608590 CACACGCTCCCAGTTCAAATT 59.391 47.619 0.00 0.00 0.00 1.82
480 502 2.293399 ACACGCTCCCAGTTCAAATTTC 59.707 45.455 0.00 0.00 0.00 2.17
481 503 2.293122 CACGCTCCCAGTTCAAATTTCA 59.707 45.455 0.00 0.00 0.00 2.69
482 504 2.955660 ACGCTCCCAGTTCAAATTTCAA 59.044 40.909 0.00 0.00 0.00 2.69
483 505 3.383185 ACGCTCCCAGTTCAAATTTCAAA 59.617 39.130 0.00 0.00 0.00 2.69
484 506 4.039124 ACGCTCCCAGTTCAAATTTCAAAT 59.961 37.500 0.00 0.00 0.00 2.32
485 507 4.622740 CGCTCCCAGTTCAAATTTCAAATC 59.377 41.667 0.00 0.00 0.00 2.17
507 529 3.131223 CGAGAGAGAGAGAGAGAGTGAGT 59.869 52.174 0.00 0.00 0.00 3.41
511 533 3.198635 AGAGAGAGAGAGAGTGAGTGAGG 59.801 52.174 0.00 0.00 0.00 3.86
534 955 4.651503 GGAGAGAGAGAGAGAGAGAGAGAA 59.348 50.000 0.00 0.00 0.00 2.87
603 1024 2.886081 CTCTTCGATCCAGGTCAGTTG 58.114 52.381 0.00 0.00 0.00 3.16
634 1055 2.924421 CATACTTCTCCCCTCTTTGCC 58.076 52.381 0.00 0.00 0.00 4.52
642 1063 2.335712 CCCTCTTTGCCGGTCTTGC 61.336 63.158 1.90 0.00 0.00 4.01
660 1081 1.065926 TGCTCTGCATCGATTCCTTGT 60.066 47.619 0.00 0.00 31.71 3.16
722 1149 1.831389 AAAGTGCGCGCTGTGTAGTG 61.831 55.000 33.29 0.00 37.49 2.74
746 1177 3.256631 AGTTGCGATTGGATTGCTTCTTT 59.743 39.130 2.18 0.00 40.43 2.52
766 1204 2.268988 CTGATGCGGCCATGCGAAAA 62.269 55.000 2.24 0.00 37.81 2.29
768 1206 0.936297 GATGCGGCCATGCGAAAATC 60.936 55.000 2.24 0.00 37.81 2.17
769 1207 1.386525 ATGCGGCCATGCGAAAATCT 61.387 50.000 2.24 0.00 37.81 2.40
777 1266 2.114056 CATGCGAAAATCTGGCATTCG 58.886 47.619 14.72 14.72 44.45 3.34
824 1316 9.392259 GGCACTACTTTATGGAGTACTAAATTT 57.608 33.333 0.00 0.00 0.00 1.82
858 1353 9.760077 CCGTAATCTTGTAGGAGTATATGTTTT 57.240 33.333 0.00 0.00 0.00 2.43
905 1400 8.136800 TGCCATTACATCTGTTTAATTATGCTG 58.863 33.333 0.00 0.00 0.00 4.41
970 1465 0.396435 TTGAATCACAGGACCAGCGT 59.604 50.000 0.00 0.00 0.00 5.07
1016 1511 3.068691 TGTCCCGAGAAGGCGAGG 61.069 66.667 0.00 0.00 39.21 4.63
1025 1520 1.072505 GAAGGCGAGGACCACCAAA 59.927 57.895 0.00 0.00 38.94 3.28
1097 1592 4.295119 AAAGACGCCGACAGCCGT 62.295 61.111 0.00 0.00 38.78 5.68
1139 1634 2.103042 GTCCTACGCCAAGCAGCTG 61.103 63.158 10.11 10.11 0.00 4.24
1187 1682 0.032952 CCGAGGTCTCCGACAACAAA 59.967 55.000 0.00 0.00 33.68 2.83
1188 1683 1.419374 CGAGGTCTCCGACAACAAAG 58.581 55.000 0.00 0.00 33.68 2.77
1514 2009 2.048222 CTCAAGGCGCTCGTGGAA 60.048 61.111 7.64 0.00 0.00 3.53
1655 2150 0.955428 TCAAGCACAACGGCCTGATC 60.955 55.000 0.00 0.00 29.65 2.92
1822 2317 2.521708 GCTTGGCAAGGTGGTGGT 60.522 61.111 27.25 0.00 0.00 4.16
2075 2588 0.905357 AGTTCCAGTCCCCTGAATCG 59.095 55.000 0.00 0.00 41.50 3.34
2160 2673 2.297033 GGGCAGTCTTCTTGCAATTTCA 59.703 45.455 0.00 0.00 0.00 2.69
2309 2825 0.246635 ACAGCGAAGTAACCGATGCT 59.753 50.000 0.00 0.00 45.91 3.79
2351 2867 1.398692 TCACAGGGTTTGTTTCAGCC 58.601 50.000 0.00 0.00 38.16 4.85
2370 2992 0.958822 CAGCCCCAACAACACCTTAC 59.041 55.000 0.00 0.00 0.00 2.34
2374 2996 1.684450 CCCCAACAACACCTTACCAAC 59.316 52.381 0.00 0.00 0.00 3.77
2416 3038 5.499652 CGCAGGTACGTACACATAATGAAAC 60.500 44.000 26.02 5.20 0.00 2.78
2419 3041 4.326817 GGTACGTACACATAATGAAACGCA 59.673 41.667 26.02 0.00 41.68 5.24
2624 3248 4.173036 TCGCCACAAGGAAAAATCAATC 57.827 40.909 0.00 0.00 36.89 2.67
2640 3264 3.414269 TCAATCATGAAGCTGAACTGCA 58.586 40.909 0.00 0.00 38.74 4.41
2647 3271 3.151554 TGAAGCTGAACTGCACATCATT 58.848 40.909 6.47 0.00 34.99 2.57
2651 3275 2.726989 GCTGAACTGCACATCATTGTCG 60.727 50.000 0.00 0.00 32.34 4.35
2655 3279 1.070821 CTGCACATCATTGTCGTCGT 58.929 50.000 0.00 0.00 32.34 4.34
2656 3280 1.059692 CTGCACATCATTGTCGTCGTC 59.940 52.381 0.00 0.00 32.34 4.20
2657 3281 0.023732 GCACATCATTGTCGTCGTCG 59.976 55.000 0.00 0.00 32.34 5.12
2658 3282 1.336877 CACATCATTGTCGTCGTCGT 58.663 50.000 1.33 0.00 38.33 4.34
2659 3283 1.317611 CACATCATTGTCGTCGTCGTC 59.682 52.381 1.33 0.00 38.33 4.20
2660 3284 1.068816 ACATCATTGTCGTCGTCGTCA 60.069 47.619 1.33 0.00 38.33 4.35
2666 3290 0.800012 TGTCGTCGTCGTCATCATCA 59.200 50.000 1.33 0.00 38.33 3.07
2711 3335 6.763610 CAGATCAGGAACATAAGGAACTAACC 59.236 42.308 0.00 0.00 38.49 2.85
2750 3374 3.055312 TGCAATCTGAGCATTCTGAGAGT 60.055 43.478 0.00 0.00 36.04 3.24
2891 3515 3.425162 ACAACCTGTGAAGAATCCTCC 57.575 47.619 0.00 0.00 0.00 4.30
2914 3538 1.821136 GGTTGAATTCAAGGAGCTGGG 59.179 52.381 21.05 0.00 36.39 4.45
2948 3572 0.392327 GAAGCAGAGGGAAGACCAGC 60.392 60.000 0.00 0.00 43.89 4.85
2961 3585 5.112686 GGAAGACCAGCAAGTATAAGACAG 58.887 45.833 0.00 0.00 35.97 3.51
2962 3586 4.130286 AGACCAGCAAGTATAAGACAGC 57.870 45.455 0.00 0.00 0.00 4.40
2979 3603 4.311816 ACAGCATTCAGTTGTCTTTTGG 57.688 40.909 0.00 0.00 37.00 3.28
2991 3615 6.875195 CAGTTGTCTTTTGGGCATAATCATTT 59.125 34.615 0.00 0.00 0.00 2.32
2994 3618 7.002250 TGTCTTTTGGGCATAATCATTTTCA 57.998 32.000 0.00 0.00 0.00 2.69
2999 3623 8.632906 TTTTGGGCATAATCATTTTCATTGTT 57.367 26.923 0.00 0.00 0.00 2.83
3029 3653 7.145985 TCATCGCTGTGTTAATTAGGATAGAC 58.854 38.462 0.00 0.00 0.00 2.59
3033 3657 6.199154 CGCTGTGTTAATTAGGATAGACAGTG 59.801 42.308 11.61 10.73 35.20 3.66
3073 3703 2.057922 AGTCCCCACTTGATGTCTGTT 58.942 47.619 0.00 0.00 0.00 3.16
3091 3722 6.540914 TGTCTGTTGGTTTTCCTACTGTTTAG 59.459 38.462 0.00 0.00 44.03 1.85
3100 3731 7.176165 GGTTTTCCTACTGTTTAGGTTATTGCT 59.824 37.037 0.00 0.00 36.16 3.91
3120 3754 6.164417 TGCTTTGTTTCTACCACAGTAGTA 57.836 37.500 0.53 0.00 45.36 1.82
3121 3755 6.765403 TGCTTTGTTTCTACCACAGTAGTAT 58.235 36.000 0.53 0.00 45.36 2.12
3126 3760 7.779754 TGTTTCTACCACAGTAGTATTGGTA 57.220 36.000 9.07 9.07 45.36 3.25
3128 3762 8.090214 TGTTTCTACCACAGTAGTATTGGTAAC 58.910 37.037 10.20 8.62 43.68 2.50
3195 3841 1.203052 CCTTGATTTTGCGCCTGTGAT 59.797 47.619 4.18 0.00 0.00 3.06
3264 3910 9.883142 TGACTTTCTGAAATTAATTTGGTTTGT 57.117 25.926 17.98 9.28 0.00 2.83
3344 3990 6.071728 ACCGCTGATCTTTTCATCAAAATTCT 60.072 34.615 0.00 0.00 32.24 2.40
3356 4017 7.878477 TCATCAAAATTCTGAAGTTGATTGC 57.122 32.000 20.78 0.00 38.37 3.56
3358 4019 8.092068 TCATCAAAATTCTGAAGTTGATTGCAT 58.908 29.630 20.78 6.60 38.37 3.96
3374 4035 7.041635 TGATTGCATAAATACATGGAACTGG 57.958 36.000 0.00 0.00 38.79 4.00
3398 4059 3.456280 TGTTTGCATTCTGGTTTTGCTC 58.544 40.909 0.00 0.00 37.28 4.26
3429 4091 4.486090 TGAAAACATCGAGACAGCTAGAC 58.514 43.478 0.00 0.00 0.00 2.59
3488 4150 6.248433 AGTTTCTAAAATCTTGATCCTGCCA 58.752 36.000 0.00 0.00 0.00 4.92
3534 4196 4.397417 CCATCATGAAGAAAGTGAAGGGAC 59.603 45.833 0.00 0.00 29.53 4.46
3631 4293 3.981071 TCCTTCTTCGTCCACATTGAT 57.019 42.857 0.00 0.00 0.00 2.57
3670 4332 0.690192 TTTCTCAGGAATGTCGGCCA 59.310 50.000 2.24 0.00 0.00 5.36
3701 4363 0.604073 CCTTGCACATTGGCACATGA 59.396 50.000 13.95 0.00 44.86 3.07
3702 4364 1.206132 CCTTGCACATTGGCACATGAT 59.794 47.619 13.95 0.00 44.86 2.45
3703 4365 2.267426 CTTGCACATTGGCACATGATG 58.733 47.619 13.95 6.10 44.86 3.07
3715 4377 0.038599 ACATGATGCTTGGCAGGTCA 59.961 50.000 0.00 0.00 43.65 4.02
3728 4390 0.179116 CAGGTCATCTGACTCTGGCG 60.179 60.000 9.98 0.00 46.18 5.69
3739 4401 1.313812 ACTCTGGCGAGAACGGTAGG 61.314 60.000 12.16 0.00 39.74 3.18
3804 4466 2.203480 GGGCAGCCCAACAGTTGA 60.203 61.111 27.33 0.00 44.65 3.18
3835 4497 2.105649 TCTTGGGTGTGATGCTGTACAA 59.894 45.455 0.00 0.00 0.00 2.41
3861 4523 1.016130 CAGCCTTGCGGTACACTGAG 61.016 60.000 0.00 0.00 0.00 3.35
3878 4540 3.181469 ACTGAGTAATGTGTGTTGTCCGT 60.181 43.478 0.00 0.00 0.00 4.69
3887 4549 1.148310 GTGTTGTCCGTGTCAGATGG 58.852 55.000 0.00 0.00 0.00 3.51
3896 4558 1.683707 TGTCAGATGGAGCCTCGCT 60.684 57.895 0.00 0.00 43.88 4.93
3917 4579 4.688419 CGCAGCGCCTTGGTTGTG 62.688 66.667 2.29 0.00 0.00 3.33
3930 4592 1.357420 TGGTTGTGCTGGTATGGGAAT 59.643 47.619 0.00 0.00 0.00 3.01
3949 4611 0.454600 TATGGGTTCGTCGTCTCAGC 59.545 55.000 0.00 0.00 0.00 4.26
4027 4700 1.565156 GACCTGTGCATCAAACGCGA 61.565 55.000 15.93 0.00 0.00 5.87
4029 4702 1.154413 CTGTGCATCAAACGCGACC 60.154 57.895 15.93 0.00 0.00 4.79
4086 4759 2.733552 CTCATCCAGTGTGTCTCAAACG 59.266 50.000 0.00 0.00 0.00 3.60
4143 4816 2.125512 GGCAAGCACGAGGTCGAT 60.126 61.111 6.35 0.00 43.02 3.59
4146 4819 1.291877 GCAAGCACGAGGTCGATGTT 61.292 55.000 6.35 0.00 43.02 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.049185 TGTCCCTCTCAGCTCGAGC 61.049 63.158 30.01 30.01 41.98 5.03
4 5 0.679640 AGTGTCCCTCTCAGCTCGAG 60.680 60.000 8.45 8.45 43.80 4.04
5 6 0.251386 AAGTGTCCCTCTCAGCTCGA 60.251 55.000 0.00 0.00 0.00 4.04
6 7 0.605589 AAAGTGTCCCTCTCAGCTCG 59.394 55.000 0.00 0.00 0.00 5.03
7 8 1.403514 CGAAAGTGTCCCTCTCAGCTC 60.404 57.143 0.00 0.00 0.00 4.09
8 9 0.605589 CGAAAGTGTCCCTCTCAGCT 59.394 55.000 0.00 0.00 0.00 4.24
9 10 0.603569 TCGAAAGTGTCCCTCTCAGC 59.396 55.000 0.00 0.00 0.00 4.26
10 11 2.163509 TCTCGAAAGTGTCCCTCTCAG 58.836 52.381 0.00 0.00 0.00 3.35
11 12 2.287977 TCTCGAAAGTGTCCCTCTCA 57.712 50.000 0.00 0.00 0.00 3.27
12 13 3.878160 ATTCTCGAAAGTGTCCCTCTC 57.122 47.619 0.00 0.00 0.00 3.20
13 14 4.712337 ACATATTCTCGAAAGTGTCCCTCT 59.288 41.667 0.00 0.00 0.00 3.69
14 15 5.012328 ACATATTCTCGAAAGTGTCCCTC 57.988 43.478 0.00 0.00 0.00 4.30
15 16 6.516718 CATACATATTCTCGAAAGTGTCCCT 58.483 40.000 4.32 0.00 0.00 4.20
16 17 5.177696 GCATACATATTCTCGAAAGTGTCCC 59.822 44.000 4.32 0.00 0.00 4.46
17 18 5.986135 AGCATACATATTCTCGAAAGTGTCC 59.014 40.000 4.32 0.00 0.00 4.02
18 19 8.749841 ATAGCATACATATTCTCGAAAGTGTC 57.250 34.615 4.32 0.00 0.00 3.67
19 20 9.547753 AAATAGCATACATATTCTCGAAAGTGT 57.452 29.630 0.00 5.86 0.00 3.55
20 21 9.803130 CAAATAGCATACATATTCTCGAAAGTG 57.197 33.333 0.00 0.00 0.00 3.16
21 22 8.499162 GCAAATAGCATACATATTCTCGAAAGT 58.501 33.333 0.00 0.00 44.79 2.66
22 23 8.871742 GCAAATAGCATACATATTCTCGAAAG 57.128 34.615 0.00 0.00 44.79 2.62
39 40 7.650834 TGGTTGACAAAATTTAGCAAATAGC 57.349 32.000 0.00 0.00 46.19 2.97
40 41 9.421806 TCATGGTTGACAAAATTTAGCAAATAG 57.578 29.630 0.00 0.00 0.00 1.73
41 42 9.421806 CTCATGGTTGACAAAATTTAGCAAATA 57.578 29.630 0.00 0.00 0.00 1.40
42 43 7.095102 GCTCATGGTTGACAAAATTTAGCAAAT 60.095 33.333 0.00 0.00 0.00 2.32
43 44 6.202570 GCTCATGGTTGACAAAATTTAGCAAA 59.797 34.615 0.00 0.00 0.00 3.68
44 45 5.695816 GCTCATGGTTGACAAAATTTAGCAA 59.304 36.000 0.00 0.00 0.00 3.91
45 46 5.229423 GCTCATGGTTGACAAAATTTAGCA 58.771 37.500 0.00 0.00 0.00 3.49
46 47 4.324402 CGCTCATGGTTGACAAAATTTAGC 59.676 41.667 0.00 0.00 0.00 3.09
47 48 5.460646 ACGCTCATGGTTGACAAAATTTAG 58.539 37.500 0.00 0.00 0.00 1.85
48 49 5.446143 ACGCTCATGGTTGACAAAATTTA 57.554 34.783 0.00 0.00 0.00 1.40
49 50 4.320608 ACGCTCATGGTTGACAAAATTT 57.679 36.364 0.00 0.00 0.00 1.82
50 51 4.759693 TCTACGCTCATGGTTGACAAAATT 59.240 37.500 0.00 0.00 0.00 1.82
51 52 4.323417 TCTACGCTCATGGTTGACAAAAT 58.677 39.130 0.00 0.00 0.00 1.82
52 53 3.734463 TCTACGCTCATGGTTGACAAAA 58.266 40.909 0.00 0.00 0.00 2.44
53 54 3.394674 TCTACGCTCATGGTTGACAAA 57.605 42.857 0.00 0.00 0.00 2.83
54 55 3.394674 TTCTACGCTCATGGTTGACAA 57.605 42.857 0.00 0.00 0.00 3.18
55 56 3.610040 ATTCTACGCTCATGGTTGACA 57.390 42.857 0.00 0.00 0.00 3.58
56 57 4.933330 TCTATTCTACGCTCATGGTTGAC 58.067 43.478 0.00 0.00 0.00 3.18
57 58 5.359860 TCTTCTATTCTACGCTCATGGTTGA 59.640 40.000 0.00 0.00 0.00 3.18
58 59 5.460419 GTCTTCTATTCTACGCTCATGGTTG 59.540 44.000 0.00 0.00 0.00 3.77
59 60 5.593010 GTCTTCTATTCTACGCTCATGGTT 58.407 41.667 0.00 0.00 0.00 3.67
60 61 4.261238 CGTCTTCTATTCTACGCTCATGGT 60.261 45.833 0.00 0.00 0.00 3.55
61 62 4.222886 CGTCTTCTATTCTACGCTCATGG 58.777 47.826 0.00 0.00 0.00 3.66
62 63 4.849883 ACGTCTTCTATTCTACGCTCATG 58.150 43.478 0.00 0.00 38.87 3.07
68 69 3.239941 CGGCAAACGTCTTCTATTCTACG 59.760 47.826 0.00 0.00 40.99 3.51
81 82 1.527380 ATGACCAACCGGCAAACGT 60.527 52.632 0.00 0.00 42.24 3.99
82 83 1.081509 CATGACCAACCGGCAAACG 60.082 57.895 0.00 0.00 43.80 3.60
95 96 2.887568 CTCCAGCGTCGGCATGAC 60.888 66.667 0.00 0.00 44.53 3.06
96 97 4.819761 GCTCCAGCGTCGGCATGA 62.820 66.667 0.00 0.00 43.41 3.07
186 193 4.385748 GGAAGGTGCGTGAATTTTGAAATC 59.614 41.667 0.00 0.00 0.00 2.17
270 285 2.030274 CCCATTTTTCAGTGACCGGTTC 60.030 50.000 9.42 5.47 0.00 3.62
272 287 1.144093 TCCCATTTTTCAGTGACCGGT 59.856 47.619 6.92 6.92 0.00 5.28
275 290 1.539827 CGGTCCCATTTTTCAGTGACC 59.460 52.381 0.00 0.00 39.07 4.02
303 318 4.026744 CAGTGGAGGAGAAATCAGGAGTA 58.973 47.826 0.00 0.00 0.00 2.59
429 451 7.470079 CAGGAAGATGACAAATGTTATGAGTG 58.530 38.462 0.00 0.00 0.00 3.51
430 452 6.094603 GCAGGAAGATGACAAATGTTATGAGT 59.905 38.462 0.00 0.00 0.00 3.41
431 453 6.493116 GCAGGAAGATGACAAATGTTATGAG 58.507 40.000 0.00 0.00 0.00 2.90
432 454 5.065090 CGCAGGAAGATGACAAATGTTATGA 59.935 40.000 0.00 0.00 0.00 2.15
433 455 5.065090 TCGCAGGAAGATGACAAATGTTATG 59.935 40.000 0.00 0.00 0.00 1.90
434 456 5.065218 GTCGCAGGAAGATGACAAATGTTAT 59.935 40.000 0.00 0.00 0.00 1.89
435 457 4.391830 GTCGCAGGAAGATGACAAATGTTA 59.608 41.667 0.00 0.00 0.00 2.41
436 458 3.189287 GTCGCAGGAAGATGACAAATGTT 59.811 43.478 0.00 0.00 0.00 2.71
437 459 2.744202 GTCGCAGGAAGATGACAAATGT 59.256 45.455 0.00 0.00 0.00 2.71
438 460 2.743664 TGTCGCAGGAAGATGACAAATG 59.256 45.455 0.00 0.00 38.32 2.32
439 461 2.744202 GTGTCGCAGGAAGATGACAAAT 59.256 45.455 0.00 0.00 42.43 2.32
440 462 2.143122 GTGTCGCAGGAAGATGACAAA 58.857 47.619 0.00 0.00 42.43 2.83
441 463 1.069978 TGTGTCGCAGGAAGATGACAA 59.930 47.619 0.00 0.00 42.43 3.18
442 464 0.678950 TGTGTCGCAGGAAGATGACA 59.321 50.000 0.00 0.00 38.91 3.58
443 465 1.071605 GTGTGTCGCAGGAAGATGAC 58.928 55.000 0.00 0.00 0.00 3.06
444 466 0.388520 CGTGTGTCGCAGGAAGATGA 60.389 55.000 0.00 0.00 35.14 2.92
445 467 2.073307 CGTGTGTCGCAGGAAGATG 58.927 57.895 0.00 0.00 35.14 2.90
446 468 4.578913 CGTGTGTCGCAGGAAGAT 57.421 55.556 0.00 0.00 35.14 2.40
455 477 2.022129 GAACTGGGAGCGTGTGTCG 61.022 63.158 0.00 0.00 43.12 4.35
456 478 0.531974 TTGAACTGGGAGCGTGTGTC 60.532 55.000 0.00 0.00 0.00 3.67
457 479 0.107410 TTTGAACTGGGAGCGTGTGT 60.107 50.000 0.00 0.00 0.00 3.72
458 480 1.238439 ATTTGAACTGGGAGCGTGTG 58.762 50.000 0.00 0.00 0.00 3.82
459 481 1.981256 AATTTGAACTGGGAGCGTGT 58.019 45.000 0.00 0.00 0.00 4.49
478 500 5.739959 TCTCTCTCTCTCTCTCGATTTGAA 58.260 41.667 0.00 0.00 0.00 2.69
480 502 5.007039 CACTCTCTCTCTCTCTCTCGATTTG 59.993 48.000 0.00 0.00 0.00 2.32
481 503 5.104941 TCACTCTCTCTCTCTCTCTCGATTT 60.105 44.000 0.00 0.00 0.00 2.17
482 504 4.405680 TCACTCTCTCTCTCTCTCTCGATT 59.594 45.833 0.00 0.00 0.00 3.34
483 505 3.960755 TCACTCTCTCTCTCTCTCTCGAT 59.039 47.826 0.00 0.00 0.00 3.59
484 506 3.361786 TCACTCTCTCTCTCTCTCTCGA 58.638 50.000 0.00 0.00 0.00 4.04
485 507 3.131223 ACTCACTCTCTCTCTCTCTCTCG 59.869 52.174 0.00 0.00 0.00 4.04
503 525 2.505407 CTCTCTCTCTCTCCCTCACTCA 59.495 54.545 0.00 0.00 0.00 3.41
507 529 3.041211 CTCTCTCTCTCTCTCTCCCTCA 58.959 54.545 0.00 0.00 0.00 3.86
511 533 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
534 955 0.402121 GAGCCAGAGACCCAAACCTT 59.598 55.000 0.00 0.00 0.00 3.50
583 1004 2.493675 TCAACTGACCTGGATCGAAGAG 59.506 50.000 0.00 0.00 43.63 2.85
620 1041 2.203938 ACCGGCAAAGAGGGGAGA 60.204 61.111 0.00 0.00 0.00 3.71
634 1055 0.529337 ATCGATGCAGAGCAAGACCG 60.529 55.000 0.00 0.00 43.62 4.79
642 1063 4.052159 ACTACAAGGAATCGATGCAGAG 57.948 45.455 5.57 0.00 0.00 3.35
660 1081 5.718130 TCCCTTTCCAATCGAGAAACTACTA 59.282 40.000 0.00 0.00 0.00 1.82
699 1126 1.009675 CACAGCGCGCACTTTTCTT 60.010 52.632 35.10 6.63 0.00 2.52
722 1149 3.375299 AGAAGCAATCCAATCGCAACTAC 59.625 43.478 0.00 0.00 0.00 2.73
746 1177 3.678951 TTCGCATGGCCGCATCAGA 62.679 57.895 0.00 0.00 0.00 3.27
766 1204 5.345702 CAAATCATGAAACGAATGCCAGAT 58.654 37.500 0.00 0.00 0.00 2.90
768 1206 3.861113 CCAAATCATGAAACGAATGCCAG 59.139 43.478 0.00 0.00 0.00 4.85
769 1207 3.257873 ACCAAATCATGAAACGAATGCCA 59.742 39.130 0.00 0.00 0.00 4.92
777 1266 7.981225 AGTGCCATAAATACCAAATCATGAAAC 59.019 33.333 0.00 0.00 0.00 2.78
824 1316 8.701908 ACTCCTACAAGATTACGGTATATCAA 57.298 34.615 10.69 0.00 0.00 2.57
825 1317 9.970553 ATACTCCTACAAGATTACGGTATATCA 57.029 33.333 10.69 0.00 0.00 2.15
858 1353 1.151760 ATTGGCCCTAGCATCCATCA 58.848 50.000 0.00 0.00 42.56 3.07
905 1400 5.441718 TGGCATCTTTCCCTCATATATCC 57.558 43.478 0.00 0.00 0.00 2.59
995 1490 2.896443 GCCTTCTCGGGACAGGAG 59.104 66.667 15.23 0.00 0.00 3.69
1016 1511 1.671166 GCCCATTGGTTTGGTGGTC 59.329 57.895 1.20 0.00 34.77 4.02
1097 1592 1.445410 CGTCTTCATGGCGTTCCGA 60.445 57.895 0.00 0.00 39.21 4.55
1361 1856 4.280494 CCGTACCGCGCTATGGCT 62.280 66.667 5.56 0.00 39.71 4.75
1511 2006 0.250513 ACCTCCAGTTGCTCGATTCC 59.749 55.000 0.00 0.00 0.00 3.01
1514 2009 1.813513 CAAACCTCCAGTTGCTCGAT 58.186 50.000 0.00 0.00 39.19 3.59
1822 2317 1.179152 CTGGCATTGCTCCATGACAA 58.821 50.000 8.82 0.00 35.06 3.18
1886 2381 0.109597 CAATGTTCTTGGCGGTCTGC 60.110 55.000 0.00 0.00 45.38 4.26
1892 2387 1.798725 CGCAGCAATGTTCTTGGCG 60.799 57.895 0.00 0.00 36.93 5.69
2075 2588 0.685097 TGGTTGAGTCTACCACCTGC 59.315 55.000 20.72 0.00 40.65 4.85
2309 2825 1.689984 TGCCAGTGCACTCAAAATCA 58.310 45.000 18.64 5.80 44.23 2.57
2351 2867 0.958822 GTAAGGTGTTGTTGGGGCTG 59.041 55.000 0.00 0.00 0.00 4.85
2370 2992 0.254178 CTGGGGGTCTCATCTGTTGG 59.746 60.000 0.00 0.00 0.00 3.77
2374 2996 1.680522 CGGACTGGGGGTCTCATCTG 61.681 65.000 0.00 0.00 43.97 2.90
2399 3021 6.838198 ATATGCGTTTCATTATGTGTACGT 57.162 33.333 13.92 0.00 38.37 3.57
2624 3248 2.486592 TGATGTGCAGTTCAGCTTCATG 59.513 45.455 0.00 0.00 33.02 3.07
2640 3264 1.068816 TGACGACGACGACAATGATGT 60.069 47.619 15.32 0.00 44.25 3.06
2647 3271 0.800012 TGATGATGACGACGACGACA 59.200 50.000 15.32 14.76 45.90 4.35
2651 3275 3.632189 TGATGATGATGATGACGACGAC 58.368 45.455 0.00 0.00 0.00 4.34
2655 3279 5.867716 GTGATGATGATGATGATGATGACGA 59.132 40.000 0.00 0.00 0.00 4.20
2656 3280 5.063564 GGTGATGATGATGATGATGATGACG 59.936 44.000 0.00 0.00 0.00 4.35
2657 3281 5.938125 TGGTGATGATGATGATGATGATGAC 59.062 40.000 0.00 0.00 0.00 3.06
2658 3282 5.938125 GTGGTGATGATGATGATGATGATGA 59.062 40.000 0.00 0.00 0.00 2.92
2659 3283 5.123979 GGTGGTGATGATGATGATGATGATG 59.876 44.000 0.00 0.00 0.00 3.07
2660 3284 5.222048 TGGTGGTGATGATGATGATGATGAT 60.222 40.000 0.00 0.00 0.00 2.45
2666 3290 4.349930 TCTGATGGTGGTGATGATGATGAT 59.650 41.667 0.00 0.00 0.00 2.45
2711 3335 3.930634 TGCATATCCTCAGATGACTCG 57.069 47.619 0.00 0.00 33.67 4.18
2750 3374 4.905456 TCTTTGTTCCCCTCTTCAGTCTTA 59.095 41.667 0.00 0.00 0.00 2.10
2891 3515 2.417933 CAGCTCCTTGAATTCAACCTCG 59.582 50.000 16.91 7.41 0.00 4.63
2914 3538 4.732784 TCTGCTTCTTTTCACACAAACAC 58.267 39.130 0.00 0.00 0.00 3.32
2948 3572 7.332926 AGACAACTGAATGCTGTCTTATACTTG 59.667 37.037 0.00 0.00 46.44 3.16
2961 3585 2.224018 TGCCCAAAAGACAACTGAATGC 60.224 45.455 0.00 0.00 0.00 3.56
2962 3586 3.731652 TGCCCAAAAGACAACTGAATG 57.268 42.857 0.00 0.00 0.00 2.67
2979 3603 6.665474 TGCAACAATGAAAATGATTATGCC 57.335 33.333 0.00 0.00 29.85 4.40
2991 3615 3.057386 ACAGCGATGATTGCAACAATGAA 60.057 39.130 8.12 0.00 33.85 2.57
2994 3618 2.229543 ACACAGCGATGATTGCAACAAT 59.770 40.909 8.12 0.00 33.85 2.71
2999 3623 4.700268 AATTAACACAGCGATGATTGCA 57.300 36.364 8.12 0.00 33.85 4.08
3029 3653 3.614092 ACCAACATAATCCTCAGCACTG 58.386 45.455 0.00 0.00 0.00 3.66
3033 3657 5.283457 ACTAGACCAACATAATCCTCAGC 57.717 43.478 0.00 0.00 0.00 4.26
3073 3703 7.040271 GCAATAACCTAAACAGTAGGAAAACCA 60.040 37.037 6.42 0.00 38.09 3.67
3091 3722 6.079424 TGTGGTAGAAACAAAGCAATAACC 57.921 37.500 0.00 0.00 0.00 2.85
3100 3731 7.511268 ACCAATACTACTGTGGTAGAAACAAA 58.489 34.615 9.85 0.00 46.01 2.83
3120 3754 7.634869 GCAAAATAATTAGGCCAGGTTACCAAT 60.635 37.037 5.01 0.00 0.00 3.16
3121 3755 6.351456 GCAAAATAATTAGGCCAGGTTACCAA 60.351 38.462 5.01 0.00 0.00 3.67
3126 3760 4.777366 ACTGCAAAATAATTAGGCCAGGTT 59.223 37.500 5.01 0.00 0.00 3.50
3128 3762 4.402155 TGACTGCAAAATAATTAGGCCAGG 59.598 41.667 5.01 0.00 0.00 4.45
3195 3841 6.320164 AGGAACACAACACTTTATAAGCACAA 59.680 34.615 0.00 0.00 0.00 3.33
3264 3910 7.187824 AGCAGACTCCAGAAATATAAACTGA 57.812 36.000 0.00 0.00 34.07 3.41
3344 3990 8.291191 TCCATGTATTTATGCAATCAACTTCA 57.709 30.769 0.00 0.00 0.00 3.02
3356 4017 9.304731 CAAACATTCCAGTTCCATGTATTTATG 57.695 33.333 0.00 0.00 30.74 1.90
3358 4019 7.039434 TGCAAACATTCCAGTTCCATGTATTTA 60.039 33.333 0.00 0.00 30.74 1.40
3398 4059 5.107491 TGTCTCGATGTTTTCAGAACAATCG 60.107 40.000 12.21 12.21 35.06 3.34
3429 4091 5.509622 GCTATCTGCTTCTTTTACTTTTGCG 59.490 40.000 0.00 0.00 38.95 4.85
3488 4150 0.106519 AGAGGGTGCTTGTGTTTGCT 60.107 50.000 0.00 0.00 0.00 3.91
3534 4196 2.097918 CGAGTTCGTCTCCGACCG 59.902 66.667 0.00 0.00 44.13 4.79
3670 4332 2.426023 GCAAGGACCACGACAGGT 59.574 61.111 0.00 0.00 46.82 4.00
3701 4363 0.622136 TCAGATGACCTGCCAAGCAT 59.378 50.000 0.00 0.00 42.62 3.79
3702 4364 0.321919 GTCAGATGACCTGCCAAGCA 60.322 55.000 1.33 0.00 42.62 3.91
3703 4365 0.035630 AGTCAGATGACCTGCCAAGC 60.036 55.000 9.31 0.00 45.85 4.01
3706 4368 0.900421 CAGAGTCAGATGACCTGCCA 59.100 55.000 9.31 0.00 45.85 4.92
3715 4377 0.453793 CGTTCTCGCCAGAGTCAGAT 59.546 55.000 0.00 0.00 44.65 2.90
3728 4390 1.516423 GGCTCACCCTACCGTTCTC 59.484 63.158 0.00 0.00 0.00 2.87
3739 4401 1.751927 CCATCTGCTTGGGCTCACC 60.752 63.158 0.00 0.00 39.59 4.02
3811 4473 0.320683 CAGCATCACACCCAAGACGA 60.321 55.000 0.00 0.00 0.00 4.20
3861 4523 2.867368 TGACACGGACAACACACATTAC 59.133 45.455 0.00 0.00 0.00 1.89
3878 4540 1.683707 AGCGAGGCTCCATCTGACA 60.684 57.895 9.32 0.00 30.62 3.58
3913 4575 3.436325 CCCATATTCCCATACCAGCACAA 60.436 47.826 0.00 0.00 0.00 3.33
3917 4579 3.421844 GAACCCATATTCCCATACCAGC 58.578 50.000 0.00 0.00 0.00 4.85
3918 4580 3.072476 ACGAACCCATATTCCCATACCAG 59.928 47.826 0.00 0.00 0.00 4.00
3930 4592 0.454600 GCTGAGACGACGAACCCATA 59.545 55.000 0.00 0.00 0.00 2.74
3949 4611 0.257039 AAGCTCCCTTACAGGCATGG 59.743 55.000 2.31 0.00 32.73 3.66
4086 4759 0.944386 CAAGTGGTGTGGTGCAGTAC 59.056 55.000 0.00 0.00 0.00 2.73
4143 4816 0.320683 CATCTCTGCCGACACCAACA 60.321 55.000 0.00 0.00 0.00 3.33
4146 4819 0.176449 CATCATCTCTGCCGACACCA 59.824 55.000 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.