Multiple sequence alignment - TraesCS6B01G171900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G171900 chr6B 100.000 4196 0 0 1 4196 184365369 184361174 0.000000e+00 7749.0
1 TraesCS6B01G171900 chr6B 86.667 390 46 6 1286 1673 184718944 184718559 1.080000e-115 427.0
2 TraesCS6B01G171900 chr6B 89.326 178 11 5 3879 4051 184300194 184300020 2.540000e-52 217.0
3 TraesCS6B01G171900 chr6A 92.546 3461 169 45 784 4196 119792093 119788674 0.000000e+00 4879.0
4 TraesCS6B01G171900 chr6A 87.363 182 6 2 580 761 119792248 119792084 4.280000e-45 193.0
5 TraesCS6B01G171900 chr6A 87.273 165 19 1 59 223 490391216 490391378 1.990000e-43 187.0
6 TraesCS6B01G171900 chr6A 100.000 49 0 0 1 49 171848122 171848170 1.610000e-14 91.6
7 TraesCS6B01G171900 chr6D 86.934 574 63 1 2597 3158 100541482 100540909 5.920000e-178 634.0
8 TraesCS6B01G171900 chr6D 87.931 406 45 3 1263 1668 100542489 100542088 3.800000e-130 475.0
9 TraesCS6B01G171900 chr6D 100.000 49 0 0 1 49 90350656 90350704 1.610000e-14 91.6
10 TraesCS6B01G171900 chr3A 78.521 852 157 16 2315 3147 630761998 630762842 1.720000e-148 536.0
11 TraesCS6B01G171900 chr3A 76.726 898 175 20 2273 3147 630769526 630770412 1.770000e-128 470.0
12 TraesCS6B01G171900 chr3A 88.073 109 6 6 93 195 79393896 79393789 5.700000e-24 122.0
13 TraesCS6B01G171900 chr3B 77.533 908 174 20 2261 3147 649998440 649999338 1.730000e-143 520.0
14 TraesCS6B01G171900 chr3B 77.246 857 168 17 2273 3108 650057506 650058356 1.060000e-130 477.0
15 TraesCS6B01G171900 chr3B 93.450 229 8 4 1 226 631050364 631050140 2.420000e-87 333.0
16 TraesCS6B01G171900 chr3B 100.000 30 0 0 221 250 631050123 631050094 5.860000e-04 56.5
17 TraesCS6B01G171900 chr3D 77.988 845 173 12 1118 1957 487118566 487119402 6.220000e-143 518.0
18 TraesCS6B01G171900 chr3D 77.000 900 175 17 2273 3147 487119691 487120583 1.750000e-133 486.0
19 TraesCS6B01G171900 chr1B 95.633 229 6 2 1 226 162777957 162777730 8.570000e-97 364.0
20 TraesCS6B01G171900 chr1B 92.262 168 10 1 62 226 642878816 642878649 7.010000e-58 235.0
21 TraesCS6B01G171900 chr5B 92.771 166 9 1 61 223 661283526 661283691 1.950000e-58 237.0
22 TraesCS6B01G171900 chr5B 91.071 168 10 2 59 223 661280033 661280198 5.460000e-54 222.0
23 TraesCS6B01G171900 chr5B 89.017 173 11 7 59 226 61658170 61658001 1.530000e-49 207.0
24 TraesCS6B01G171900 chr5B 94.175 103 3 1 124 223 661265081 661265183 2.020000e-33 154.0
25 TraesCS6B01G171900 chr5B 100.000 30 0 0 221 250 661280218 661280247 5.860000e-04 56.5
26 TraesCS6B01G171900 chr5B 100.000 30 0 0 221 250 661283711 661283740 5.860000e-04 56.5
27 TraesCS6B01G171900 chr7A 88.372 172 9 7 61 223 627233790 627233959 3.310000e-46 196.0
28 TraesCS6B01G171900 chr7B 87.952 166 12 4 61 223 655043321 655043481 5.540000e-44 189.0
29 TraesCS6B01G171900 chr2B 92.913 127 6 1 100 223 40529505 40529631 9.270000e-42 182.0
30 TraesCS6B01G171900 chr2B 100.000 30 0 0 221 250 733969295 733969266 5.860000e-04 56.5
31 TraesCS6B01G171900 chr4D 100.000 49 0 0 1 49 455617725 455617773 1.610000e-14 91.6
32 TraesCS6B01G171900 chr4D 100.000 49 0 0 1 49 471413002 471413050 1.610000e-14 91.6
33 TraesCS6B01G171900 chr4D 91.489 47 3 1 1547 1593 443512324 443512279 3.500000e-06 63.9
34 TraesCS6B01G171900 chr4A 98.077 52 1 0 1 52 699093609 699093558 1.610000e-14 91.6
35 TraesCS6B01G171900 chr4A 93.182 44 2 1 1547 1590 24225599 24225641 3.500000e-06 63.9
36 TraesCS6B01G171900 chr1D 100.000 49 0 0 1 49 404278688 404278736 1.610000e-14 91.6
37 TraesCS6B01G171900 chr1A 98.077 52 1 0 1 52 27386486 27386435 1.610000e-14 91.6
38 TraesCS6B01G171900 chr1A 100.000 30 0 0 221 250 22058001 22057972 5.860000e-04 56.5
39 TraesCS6B01G171900 chr4B 89.362 47 4 1 1547 1593 552831819 552831774 1.630000e-04 58.4
40 TraesCS6B01G171900 chrUn 100.000 29 0 0 221 249 221207535 221207563 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G171900 chr6B 184361174 184365369 4195 True 7749.0 7749 100.0000 1 4196 1 chr6B.!!$R2 4195
1 TraesCS6B01G171900 chr6A 119788674 119792248 3574 True 2536.0 4879 89.9545 580 4196 2 chr6A.!!$R1 3616
2 TraesCS6B01G171900 chr6D 100540909 100542489 1580 True 554.5 634 87.4325 1263 3158 2 chr6D.!!$R1 1895
3 TraesCS6B01G171900 chr3A 630761998 630762842 844 False 536.0 536 78.5210 2315 3147 1 chr3A.!!$F1 832
4 TraesCS6B01G171900 chr3A 630769526 630770412 886 False 470.0 470 76.7260 2273 3147 1 chr3A.!!$F2 874
5 TraesCS6B01G171900 chr3B 649998440 649999338 898 False 520.0 520 77.5330 2261 3147 1 chr3B.!!$F1 886
6 TraesCS6B01G171900 chr3B 650057506 650058356 850 False 477.0 477 77.2460 2273 3108 1 chr3B.!!$F2 835
7 TraesCS6B01G171900 chr3D 487118566 487120583 2017 False 502.0 518 77.4940 1118 3147 2 chr3D.!!$F1 2029

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
311 312 0.035056 CCCTCCATTCTTGTCGCCTT 60.035 55.0 0.0 0.0 0.0 4.35 F
530 531 0.099082 GGTGCCACAAAACGAACGAA 59.901 50.0 0.0 0.0 0.0 3.85 F
1535 1539 0.103208 ATCTCCATGAACTCGACGCC 59.897 55.0 0.0 0.0 0.0 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1497 1501 0.250553 TGGTGTCGTTGGGGTTCATC 60.251 55.000 0.0 0.0 0.00 2.92 R
2229 2365 1.065928 CAGCGGATACTCACCCGTC 59.934 63.158 0.0 0.0 46.84 4.79 R
3529 3708 0.251165 TTTGGCTTACACCCAGCTCC 60.251 55.000 0.0 0.0 37.43 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.379243 AGCTGCAACCTCGACCGG 62.379 66.667 0.00 0.00 0.00 5.28
22 23 3.751246 CAACCTCGACCGGCCGTA 61.751 66.667 26.12 5.43 0.00 4.02
23 24 2.990967 AACCTCGACCGGCCGTAA 60.991 61.111 26.12 5.05 0.00 3.18
24 25 3.286915 AACCTCGACCGGCCGTAAC 62.287 63.158 26.12 13.59 0.00 2.50
25 26 4.842091 CCTCGACCGGCCGTAACG 62.842 72.222 26.12 24.20 0.00 3.18
36 37 2.278013 CGTAACGGAGCTCGAGCC 60.278 66.667 32.94 23.14 43.38 4.70
37 38 2.104530 GTAACGGAGCTCGAGCCC 59.895 66.667 32.94 29.00 43.38 5.19
38 39 2.361992 TAACGGAGCTCGAGCCCA 60.362 61.111 32.94 15.09 43.38 5.36
39 40 1.980232 TAACGGAGCTCGAGCCCAA 60.980 57.895 32.94 17.67 43.38 4.12
40 41 1.537814 TAACGGAGCTCGAGCCCAAA 61.538 55.000 32.94 17.36 43.38 3.28
41 42 2.185310 AACGGAGCTCGAGCCCAAAT 62.185 55.000 32.94 15.19 43.38 2.32
42 43 1.884926 CGGAGCTCGAGCCCAAATC 60.885 63.158 32.94 22.51 43.38 2.17
43 44 1.524849 GGAGCTCGAGCCCAAATCC 60.525 63.158 32.94 27.04 43.38 3.01
44 45 1.221840 GAGCTCGAGCCCAAATCCA 59.778 57.895 32.94 0.00 43.38 3.41
45 46 0.179034 GAGCTCGAGCCCAAATCCAT 60.179 55.000 32.94 11.94 43.38 3.41
46 47 0.465097 AGCTCGAGCCCAAATCCATG 60.465 55.000 32.94 0.00 43.38 3.66
47 48 1.450531 GCTCGAGCCCAAATCCATGG 61.451 60.000 27.22 4.97 40.35 3.66
48 49 1.450531 CTCGAGCCCAAATCCATGGC 61.451 60.000 6.96 0.00 45.70 4.40
51 52 2.502577 GCCCAAATCCATGGCAGC 59.497 61.111 6.96 0.00 44.70 5.25
52 53 2.809706 CCCAAATCCATGGCAGCG 59.190 61.111 6.96 0.00 39.26 5.18
53 54 1.753848 CCCAAATCCATGGCAGCGA 60.754 57.895 6.96 0.00 39.26 4.93
54 55 1.111116 CCCAAATCCATGGCAGCGAT 61.111 55.000 6.96 0.00 39.26 4.58
55 56 0.313043 CCAAATCCATGGCAGCGATC 59.687 55.000 6.96 0.00 32.78 3.69
56 57 1.315690 CAAATCCATGGCAGCGATCT 58.684 50.000 6.96 0.00 0.00 2.75
57 58 1.001706 CAAATCCATGGCAGCGATCTG 60.002 52.381 6.96 0.00 43.16 2.90
68 69 2.732468 CGATCTGCGCCGGAGATG 60.732 66.667 26.02 13.68 29.97 2.90
69 70 3.040763 GATCTGCGCCGGAGATGC 61.041 66.667 26.02 13.10 29.97 3.91
70 71 3.797225 GATCTGCGCCGGAGATGCA 62.797 63.158 26.02 10.17 36.20 3.96
71 72 4.819761 TCTGCGCCGGAGATGCAC 62.820 66.667 10.31 0.00 34.16 4.57
117 118 3.790437 CTGCGAGCCACAGGGGAT 61.790 66.667 0.00 0.00 40.01 3.85
122 123 3.474570 AGCCACAGGGGATCTCGC 61.475 66.667 0.00 0.00 40.01 5.03
154 155 3.798511 GGGGGCCCGAGGAAGAAG 61.799 72.222 17.79 0.00 0.00 2.85
155 156 3.009714 GGGGCCCGAGGAAGAAGT 61.010 66.667 17.79 0.00 0.00 3.01
156 157 2.603652 GGGGCCCGAGGAAGAAGTT 61.604 63.158 17.79 0.00 0.00 2.66
157 158 1.377333 GGGCCCGAGGAAGAAGTTG 60.377 63.158 5.69 0.00 0.00 3.16
158 159 1.377333 GGCCCGAGGAAGAAGTTGG 60.377 63.158 0.00 0.00 0.00 3.77
159 160 1.377333 GCCCGAGGAAGAAGTTGGG 60.377 63.158 0.00 0.00 39.72 4.12
160 161 1.299976 CCCGAGGAAGAAGTTGGGG 59.700 63.158 0.00 0.00 32.85 4.96
161 162 1.489560 CCCGAGGAAGAAGTTGGGGT 61.490 60.000 0.00 0.00 32.85 4.95
162 163 1.272807 CCGAGGAAGAAGTTGGGGTA 58.727 55.000 0.00 0.00 0.00 3.69
163 164 1.626825 CCGAGGAAGAAGTTGGGGTAA 59.373 52.381 0.00 0.00 0.00 2.85
164 165 2.238898 CCGAGGAAGAAGTTGGGGTAAT 59.761 50.000 0.00 0.00 0.00 1.89
165 166 3.308188 CCGAGGAAGAAGTTGGGGTAATT 60.308 47.826 0.00 0.00 0.00 1.40
166 167 4.332828 CGAGGAAGAAGTTGGGGTAATTT 58.667 43.478 0.00 0.00 0.00 1.82
167 168 4.765339 CGAGGAAGAAGTTGGGGTAATTTT 59.235 41.667 0.00 0.00 0.00 1.82
168 169 5.941647 CGAGGAAGAAGTTGGGGTAATTTTA 59.058 40.000 0.00 0.00 0.00 1.52
169 170 6.602009 CGAGGAAGAAGTTGGGGTAATTTTAT 59.398 38.462 0.00 0.00 0.00 1.40
170 171 7.122204 CGAGGAAGAAGTTGGGGTAATTTTATT 59.878 37.037 0.00 0.00 0.00 1.40
171 172 8.736097 AGGAAGAAGTTGGGGTAATTTTATTT 57.264 30.769 0.00 0.00 0.00 1.40
172 173 9.166222 AGGAAGAAGTTGGGGTAATTTTATTTT 57.834 29.630 0.00 0.00 0.00 1.82
173 174 9.787435 GGAAGAAGTTGGGGTAATTTTATTTTT 57.213 29.630 0.00 0.00 0.00 1.94
192 193 1.533625 TTTTGCTCCAGATCCAACCG 58.466 50.000 0.00 0.00 0.00 4.44
193 194 0.960364 TTTGCTCCAGATCCAACCGC 60.960 55.000 0.00 0.00 0.00 5.68
194 195 2.514824 GCTCCAGATCCAACCGCC 60.515 66.667 0.00 0.00 0.00 6.13
195 196 2.190578 CTCCAGATCCAACCGCCC 59.809 66.667 0.00 0.00 0.00 6.13
196 197 3.740128 CTCCAGATCCAACCGCCCG 62.740 68.421 0.00 0.00 0.00 6.13
198 199 4.776322 CAGATCCAACCGCCCGCA 62.776 66.667 0.00 0.00 0.00 5.69
199 200 4.778143 AGATCCAACCGCCCGCAC 62.778 66.667 0.00 0.00 0.00 5.34
222 223 3.418068 GCATCGAGCGGCTATGGC 61.418 66.667 13.15 7.15 37.82 4.40
251 252 2.499685 CGCCTAGTGGTGCCCTAC 59.500 66.667 0.00 0.00 37.01 3.18
259 260 4.107029 GGTGCCCTACCCCAAAAC 57.893 61.111 0.00 0.00 44.15 2.43
260 261 1.608336 GGTGCCCTACCCCAAAACC 60.608 63.158 0.00 0.00 44.15 3.27
261 262 1.463375 GTGCCCTACCCCAAAACCT 59.537 57.895 0.00 0.00 0.00 3.50
262 263 0.611062 GTGCCCTACCCCAAAACCTC 60.611 60.000 0.00 0.00 0.00 3.85
263 264 0.774491 TGCCCTACCCCAAAACCTCT 60.774 55.000 0.00 0.00 0.00 3.69
264 265 0.408309 GCCCTACCCCAAAACCTCTT 59.592 55.000 0.00 0.00 0.00 2.85
265 266 1.891011 GCCCTACCCCAAAACCTCTTG 60.891 57.143 0.00 0.00 0.00 3.02
266 267 1.545841 CCTACCCCAAAACCTCTTGC 58.454 55.000 0.00 0.00 0.00 4.01
267 268 1.165270 CTACCCCAAAACCTCTTGCG 58.835 55.000 0.00 0.00 0.00 4.85
268 269 0.766131 TACCCCAAAACCTCTTGCGA 59.234 50.000 0.00 0.00 0.00 5.10
269 270 0.106419 ACCCCAAAACCTCTTGCGAA 60.106 50.000 0.00 0.00 0.00 4.70
270 271 1.256812 CCCCAAAACCTCTTGCGAAT 58.743 50.000 0.00 0.00 0.00 3.34
271 272 1.067635 CCCCAAAACCTCTTGCGAATG 60.068 52.381 0.00 0.00 0.00 2.67
272 273 1.669795 CCCAAAACCTCTTGCGAATGC 60.670 52.381 0.00 0.00 43.20 3.56
289 290 4.268687 CACCTCTTGCACGAGTCC 57.731 61.111 17.96 0.00 0.00 3.85
290 291 1.668294 CACCTCTTGCACGAGTCCT 59.332 57.895 17.96 0.00 0.00 3.85
291 292 0.389166 CACCTCTTGCACGAGTCCTC 60.389 60.000 17.96 0.00 0.00 3.71
292 293 1.216710 CCTCTTGCACGAGTCCTCC 59.783 63.158 17.96 0.00 0.00 4.30
293 294 1.216710 CTCTTGCACGAGTCCTCCC 59.783 63.158 11.91 0.00 0.00 4.30
294 295 2.232298 CTCTTGCACGAGTCCTCCCC 62.232 65.000 11.91 0.00 0.00 4.81
295 296 2.203788 TTGCACGAGTCCTCCCCT 60.204 61.111 0.00 0.00 0.00 4.79
296 297 2.232298 CTTGCACGAGTCCTCCCCTC 62.232 65.000 0.00 0.00 0.00 4.30
297 298 3.462678 GCACGAGTCCTCCCCTCC 61.463 72.222 0.00 0.00 0.00 4.30
298 299 2.037367 CACGAGTCCTCCCCTCCA 59.963 66.667 0.00 0.00 0.00 3.86
299 300 1.381872 CACGAGTCCTCCCCTCCAT 60.382 63.158 0.00 0.00 0.00 3.41
300 301 0.978146 CACGAGTCCTCCCCTCCATT 60.978 60.000 0.00 0.00 0.00 3.16
301 302 0.688087 ACGAGTCCTCCCCTCCATTC 60.688 60.000 0.00 0.00 0.00 2.67
302 303 0.397816 CGAGTCCTCCCCTCCATTCT 60.398 60.000 0.00 0.00 0.00 2.40
303 304 1.886422 GAGTCCTCCCCTCCATTCTT 58.114 55.000 0.00 0.00 0.00 2.52
304 305 1.488393 GAGTCCTCCCCTCCATTCTTG 59.512 57.143 0.00 0.00 0.00 3.02
305 306 1.203492 AGTCCTCCCCTCCATTCTTGT 60.203 52.381 0.00 0.00 0.00 3.16
306 307 1.210722 GTCCTCCCCTCCATTCTTGTC 59.789 57.143 0.00 0.00 0.00 3.18
307 308 0.179000 CCTCCCCTCCATTCTTGTCG 59.821 60.000 0.00 0.00 0.00 4.35
308 309 0.462759 CTCCCCTCCATTCTTGTCGC 60.463 60.000 0.00 0.00 0.00 5.19
309 310 1.452108 CCCCTCCATTCTTGTCGCC 60.452 63.158 0.00 0.00 0.00 5.54
310 311 1.604378 CCCTCCATTCTTGTCGCCT 59.396 57.895 0.00 0.00 0.00 5.52
311 312 0.035056 CCCTCCATTCTTGTCGCCTT 60.035 55.000 0.00 0.00 0.00 4.35
312 313 1.373570 CCTCCATTCTTGTCGCCTTC 58.626 55.000 0.00 0.00 0.00 3.46
313 314 1.373570 CTCCATTCTTGTCGCCTTCC 58.626 55.000 0.00 0.00 0.00 3.46
314 315 0.984230 TCCATTCTTGTCGCCTTCCT 59.016 50.000 0.00 0.00 0.00 3.36
315 316 1.066143 TCCATTCTTGTCGCCTTCCTC 60.066 52.381 0.00 0.00 0.00 3.71
316 317 1.373570 CATTCTTGTCGCCTTCCTCC 58.626 55.000 0.00 0.00 0.00 4.30
317 318 0.108138 ATTCTTGTCGCCTTCCTCCG 60.108 55.000 0.00 0.00 0.00 4.63
318 319 1.469335 TTCTTGTCGCCTTCCTCCGT 61.469 55.000 0.00 0.00 0.00 4.69
319 320 1.446272 CTTGTCGCCTTCCTCCGTC 60.446 63.158 0.00 0.00 0.00 4.79
320 321 2.837371 CTTGTCGCCTTCCTCCGTCC 62.837 65.000 0.00 0.00 0.00 4.79
321 322 4.493747 GTCGCCTTCCTCCGTCCG 62.494 72.222 0.00 0.00 0.00 4.79
323 324 4.493747 CGCCTTCCTCCGTCCGTC 62.494 72.222 0.00 0.00 0.00 4.79
324 325 3.379445 GCCTTCCTCCGTCCGTCA 61.379 66.667 0.00 0.00 0.00 4.35
325 326 2.572284 CCTTCCTCCGTCCGTCAC 59.428 66.667 0.00 0.00 0.00 3.67
336 337 2.954868 CCGTCACGGTCTATGCGC 60.955 66.667 8.54 0.00 42.73 6.09
337 338 2.202557 CGTCACGGTCTATGCGCA 60.203 61.111 14.96 14.96 0.00 6.09
338 339 2.505498 CGTCACGGTCTATGCGCAC 61.505 63.158 14.90 0.00 0.00 5.34
339 340 1.445410 GTCACGGTCTATGCGCACA 60.445 57.895 14.90 0.00 0.00 4.57
340 341 1.153842 TCACGGTCTATGCGCACAG 60.154 57.895 14.90 12.28 0.00 3.66
361 362 4.043200 GCAGAGCGCAAACCCACC 62.043 66.667 11.47 0.00 41.79 4.61
362 363 3.726517 CAGAGCGCAAACCCACCG 61.727 66.667 11.47 0.00 0.00 4.94
369 370 3.726517 CAAACCCACCGCAGCGAG 61.727 66.667 18.75 9.19 0.00 5.03
370 371 3.936203 AAACCCACCGCAGCGAGA 61.936 61.111 18.75 0.00 0.00 4.04
371 372 3.469863 AAACCCACCGCAGCGAGAA 62.470 57.895 18.75 0.00 0.00 2.87
372 373 4.681978 ACCCACCGCAGCGAGAAC 62.682 66.667 18.75 0.00 0.00 3.01
403 404 4.487412 CGCCTCCGGTCGTACCAC 62.487 72.222 0.00 0.00 38.47 4.16
404 405 3.066814 GCCTCCGGTCGTACCACT 61.067 66.667 0.00 0.00 38.47 4.00
405 406 3.061260 GCCTCCGGTCGTACCACTC 62.061 68.421 0.00 0.00 38.47 3.51
406 407 2.758089 CCTCCGGTCGTACCACTCG 61.758 68.421 0.00 0.00 38.47 4.18
407 408 3.392595 CTCCGGTCGTACCACTCGC 62.393 68.421 0.00 0.00 38.47 5.03
408 409 3.740397 CCGGTCGTACCACTCGCA 61.740 66.667 0.00 0.00 38.47 5.10
409 410 2.503375 CGGTCGTACCACTCGCAC 60.503 66.667 5.15 0.00 38.47 5.34
410 411 2.960170 GGTCGTACCACTCGCACT 59.040 61.111 0.00 0.00 38.42 4.40
411 412 1.154073 GGTCGTACCACTCGCACTC 60.154 63.158 0.00 0.00 38.42 3.51
412 413 1.511464 GTCGTACCACTCGCACTCG 60.511 63.158 0.00 0.00 0.00 4.18
413 414 2.874780 CGTACCACTCGCACTCGC 60.875 66.667 0.00 0.00 35.26 5.03
430 431 4.116328 CGCCGCTTCTCGACTGGA 62.116 66.667 0.00 0.00 41.67 3.86
431 432 2.496817 GCCGCTTCTCGACTGGAT 59.503 61.111 0.00 0.00 41.67 3.41
432 433 1.880340 GCCGCTTCTCGACTGGATG 60.880 63.158 0.00 0.00 41.67 3.51
433 434 1.513158 CCGCTTCTCGACTGGATGT 59.487 57.895 0.00 0.00 41.67 3.06
434 435 0.108615 CCGCTTCTCGACTGGATGTT 60.109 55.000 0.00 0.00 41.67 2.71
435 436 0.994995 CGCTTCTCGACTGGATGTTG 59.005 55.000 0.00 0.00 41.67 3.33
436 437 1.402852 CGCTTCTCGACTGGATGTTGA 60.403 52.381 0.00 0.00 41.67 3.18
437 438 1.996191 GCTTCTCGACTGGATGTTGAC 59.004 52.381 0.00 0.00 35.37 3.18
438 439 2.353208 GCTTCTCGACTGGATGTTGACT 60.353 50.000 0.00 0.00 35.37 3.41
439 440 3.506810 CTTCTCGACTGGATGTTGACTC 58.493 50.000 0.00 0.00 35.37 3.36
440 441 1.819288 TCTCGACTGGATGTTGACTCC 59.181 52.381 0.00 0.00 35.37 3.85
441 442 1.821753 CTCGACTGGATGTTGACTCCT 59.178 52.381 0.00 0.00 35.37 3.69
442 443 1.819288 TCGACTGGATGTTGACTCCTC 59.181 52.381 0.00 0.00 34.32 3.71
443 444 1.134965 CGACTGGATGTTGACTCCTCC 60.135 57.143 0.00 0.00 33.69 4.30
444 445 1.208293 GACTGGATGTTGACTCCTCCC 59.792 57.143 0.00 0.00 33.69 4.30
445 446 1.279496 CTGGATGTTGACTCCTCCCA 58.721 55.000 0.00 0.00 33.69 4.37
446 447 1.842562 CTGGATGTTGACTCCTCCCAT 59.157 52.381 0.00 0.00 33.69 4.00
447 448 1.839994 TGGATGTTGACTCCTCCCATC 59.160 52.381 0.00 0.00 33.69 3.51
448 449 1.202580 GGATGTTGACTCCTCCCATCG 60.203 57.143 0.00 0.00 34.20 3.84
449 450 0.179000 ATGTTGACTCCTCCCATCGC 59.821 55.000 0.00 0.00 0.00 4.58
450 451 1.519455 GTTGACTCCTCCCATCGCG 60.519 63.158 0.00 0.00 0.00 5.87
451 452 1.680989 TTGACTCCTCCCATCGCGA 60.681 57.895 13.09 13.09 0.00 5.87
452 453 1.043116 TTGACTCCTCCCATCGCGAT 61.043 55.000 17.62 17.62 0.00 4.58
453 454 1.006805 GACTCCTCCCATCGCGATG 60.007 63.158 36.28 36.28 38.51 3.84
454 455 1.455773 ACTCCTCCCATCGCGATGA 60.456 57.895 42.44 26.53 41.20 2.92
455 456 1.043116 ACTCCTCCCATCGCGATGAA 61.043 55.000 42.44 29.80 41.20 2.57
456 457 0.598680 CTCCTCCCATCGCGATGAAC 60.599 60.000 42.44 0.00 41.20 3.18
457 458 1.951130 CCTCCCATCGCGATGAACG 60.951 63.158 42.44 29.60 41.20 3.95
458 459 1.951130 CTCCCATCGCGATGAACGG 60.951 63.158 42.44 34.25 41.20 4.44
459 460 2.106131 CCCATCGCGATGAACGGA 59.894 61.111 42.44 6.49 41.20 4.69
460 461 1.951130 CCCATCGCGATGAACGGAG 60.951 63.158 42.44 26.88 41.20 4.63
461 462 2.589492 CCATCGCGATGAACGGAGC 61.589 63.158 42.44 0.00 41.20 4.70
462 463 1.589993 CATCGCGATGAACGGAGCT 60.590 57.895 39.24 4.22 41.20 4.09
463 464 1.589993 ATCGCGATGAACGGAGCTG 60.590 57.895 23.04 0.00 42.83 4.24
464 465 3.918220 CGCGATGAACGGAGCTGC 61.918 66.667 0.00 0.00 42.83 5.25
465 466 3.567797 GCGATGAACGGAGCTGCC 61.568 66.667 0.00 0.00 42.83 4.85
466 467 2.125552 CGATGAACGGAGCTGCCA 60.126 61.111 0.00 0.00 38.46 4.92
467 468 1.522355 CGATGAACGGAGCTGCCAT 60.522 57.895 0.00 0.00 38.46 4.40
468 469 1.769098 CGATGAACGGAGCTGCCATG 61.769 60.000 0.00 0.00 38.46 3.66
469 470 1.442526 GATGAACGGAGCTGCCATGG 61.443 60.000 7.63 7.63 35.94 3.66
470 471 3.512516 GAACGGAGCTGCCATGGC 61.513 66.667 30.54 30.54 42.35 4.40
473 474 4.889112 CGGAGCTGCCATGGCCAT 62.889 66.667 33.44 19.21 41.09 4.40
474 475 3.224324 GGAGCTGCCATGGCCATG 61.224 66.667 34.82 34.82 41.09 3.66
475 476 3.912907 GAGCTGCCATGGCCATGC 61.913 66.667 36.08 30.27 41.09 4.06
478 479 3.896133 CTGCCATGGCCATGCGAC 61.896 66.667 36.08 26.80 41.09 5.19
481 482 3.520862 CCATGGCCATGCGACCAC 61.521 66.667 36.08 0.00 39.19 4.16
482 483 2.751036 CATGGCCATGCGACCACA 60.751 61.111 31.95 0.00 39.19 4.17
483 484 2.751436 ATGGCCATGCGACCACAC 60.751 61.111 20.04 0.00 39.19 3.82
484 485 3.565961 ATGGCCATGCGACCACACA 62.566 57.895 20.04 0.00 39.19 3.72
485 486 3.737172 GGCCATGCGACCACACAC 61.737 66.667 0.00 0.00 0.00 3.82
486 487 2.977456 GCCATGCGACCACACACA 60.977 61.111 0.00 0.00 0.00 3.72
487 488 2.945984 CCATGCGACCACACACAC 59.054 61.111 0.00 0.00 0.00 3.82
488 489 1.891449 CCATGCGACCACACACACA 60.891 57.895 0.00 0.00 0.00 3.72
489 490 1.279539 CATGCGACCACACACACAC 59.720 57.895 0.00 0.00 0.00 3.82
490 491 1.153269 ATGCGACCACACACACACA 60.153 52.632 0.00 0.00 0.00 3.72
491 492 1.436195 ATGCGACCACACACACACAC 61.436 55.000 0.00 0.00 0.00 3.82
492 493 3.002673 CGACCACACACACACACG 58.997 61.111 0.00 0.00 0.00 4.49
493 494 2.707039 GACCACACACACACACGC 59.293 61.111 0.00 0.00 0.00 5.34
494 495 3.150410 GACCACACACACACACGCG 62.150 63.158 3.53 3.53 0.00 6.01
495 496 4.589700 CCACACACACACACGCGC 62.590 66.667 5.73 0.00 0.00 6.86
496 497 4.918060 CACACACACACACGCGCG 62.918 66.667 30.96 30.96 0.00 6.86
512 513 4.742201 CGTGACAGGTCCGCTGGG 62.742 72.222 0.00 0.00 0.00 4.45
513 514 3.626924 GTGACAGGTCCGCTGGGT 61.627 66.667 0.00 0.00 33.83 4.51
514 515 3.625897 TGACAGGTCCGCTGGGTG 61.626 66.667 0.00 0.00 33.83 4.61
520 521 4.947147 GTCCGCTGGGTGCCACAA 62.947 66.667 0.00 0.00 38.78 3.33
521 522 4.196778 TCCGCTGGGTGCCACAAA 62.197 61.111 0.00 0.00 38.78 2.83
522 523 3.222855 CCGCTGGGTGCCACAAAA 61.223 61.111 0.00 0.00 38.78 2.44
523 524 2.027460 CGCTGGGTGCCACAAAAC 59.973 61.111 0.00 0.00 38.78 2.43
524 525 2.027460 GCTGGGTGCCACAAAACG 59.973 61.111 0.00 0.00 35.15 3.60
525 526 2.485795 GCTGGGTGCCACAAAACGA 61.486 57.895 0.00 0.00 35.15 3.85
526 527 2.010582 GCTGGGTGCCACAAAACGAA 62.011 55.000 0.00 0.00 35.15 3.85
527 528 0.248866 CTGGGTGCCACAAAACGAAC 60.249 55.000 0.00 0.00 0.00 3.95
528 529 1.298788 GGGTGCCACAAAACGAACG 60.299 57.895 0.00 0.00 0.00 3.95
529 530 1.716826 GGGTGCCACAAAACGAACGA 61.717 55.000 0.00 0.00 0.00 3.85
530 531 0.099082 GGTGCCACAAAACGAACGAA 59.901 50.000 0.00 0.00 0.00 3.85
531 532 1.462791 GTGCCACAAAACGAACGAAG 58.537 50.000 0.14 0.00 0.00 3.79
532 533 1.062880 GTGCCACAAAACGAACGAAGA 59.937 47.619 0.14 0.00 0.00 2.87
533 534 1.944024 TGCCACAAAACGAACGAAGAT 59.056 42.857 0.14 0.00 0.00 2.40
534 535 2.356382 TGCCACAAAACGAACGAAGATT 59.644 40.909 0.14 0.00 0.00 2.40
535 536 2.719046 GCCACAAAACGAACGAAGATTG 59.281 45.455 0.14 3.51 0.00 2.67
536 537 3.547214 GCCACAAAACGAACGAAGATTGA 60.547 43.478 0.14 0.00 0.00 2.57
537 538 4.593157 CCACAAAACGAACGAAGATTGAA 58.407 39.130 0.14 0.00 0.00 2.69
538 539 4.436523 CCACAAAACGAACGAAGATTGAAC 59.563 41.667 0.14 0.00 0.00 3.18
539 540 5.025190 CACAAAACGAACGAAGATTGAACA 58.975 37.500 0.14 0.00 0.00 3.18
540 541 5.025826 ACAAAACGAACGAAGATTGAACAC 58.974 37.500 0.14 0.00 0.00 3.32
541 542 3.872560 AACGAACGAAGATTGAACACC 57.127 42.857 0.14 0.00 0.00 4.16
542 543 1.790623 ACGAACGAAGATTGAACACCG 59.209 47.619 0.14 0.00 0.00 4.94
543 544 1.461888 CGAACGAAGATTGAACACCGC 60.462 52.381 0.00 0.00 0.00 5.68
544 545 1.529438 GAACGAAGATTGAACACCGCA 59.471 47.619 0.00 0.00 0.00 5.69
545 546 0.865769 ACGAAGATTGAACACCGCAC 59.134 50.000 0.00 0.00 0.00 5.34
546 547 1.148310 CGAAGATTGAACACCGCACT 58.852 50.000 0.00 0.00 0.00 4.40
547 548 1.136252 CGAAGATTGAACACCGCACTG 60.136 52.381 0.00 0.00 0.00 3.66
548 549 1.197721 GAAGATTGAACACCGCACTGG 59.802 52.381 0.00 0.00 46.41 4.00
557 558 3.046087 CCGCACTGGTGTGAGCTG 61.046 66.667 14.79 0.00 46.55 4.24
558 559 2.280389 CGCACTGGTGTGAGCTGT 60.280 61.111 8.40 0.00 46.55 4.40
559 560 2.601398 CGCACTGGTGTGAGCTGTG 61.601 63.158 8.40 8.05 46.55 3.66
560 561 2.256591 GCACTGGTGTGAGCTGTGG 61.257 63.158 12.71 0.00 46.55 4.17
561 562 1.146930 CACTGGTGTGAGCTGTGGT 59.853 57.895 0.00 0.00 46.55 4.16
562 563 1.146930 ACTGGTGTGAGCTGTGGTG 59.853 57.895 0.00 0.00 0.00 4.17
563 564 2.203195 TGGTGTGAGCTGTGGTGC 60.203 61.111 0.00 0.00 0.00 5.01
564 565 2.203195 GGTGTGAGCTGTGGTGCA 60.203 61.111 0.00 0.00 34.99 4.57
565 566 1.601759 GGTGTGAGCTGTGGTGCAT 60.602 57.895 0.00 0.00 34.99 3.96
566 567 1.577922 GTGTGAGCTGTGGTGCATG 59.422 57.895 0.00 0.00 34.99 4.06
567 568 2.263021 TGTGAGCTGTGGTGCATGC 61.263 57.895 11.82 11.82 34.99 4.06
568 569 3.051479 TGAGCTGTGGTGCATGCG 61.051 61.111 14.09 0.00 34.99 4.73
569 570 4.471726 GAGCTGTGGTGCATGCGC 62.472 66.667 23.05 23.05 39.24 6.09
584 585 3.519579 CATGCGCAATTTCCCATACAAA 58.480 40.909 17.11 0.00 0.00 2.83
625 626 1.633171 GAGCTGCGCTTGATACACG 59.367 57.895 9.73 0.00 39.88 4.49
716 717 3.306166 GTGTCGATCCGAACTACAAATGG 59.694 47.826 0.00 0.00 37.72 3.16
718 719 2.093921 TCGATCCGAACTACAAATGGCA 60.094 45.455 0.00 0.00 31.06 4.92
743 744 0.601558 TTCGTGTAGCTCCACTCCAC 59.398 55.000 7.90 0.00 32.10 4.02
758 759 1.850345 CTCCACTCTCCTCCTCTAGGT 59.150 57.143 0.00 0.00 46.62 3.08
759 760 1.847737 TCCACTCTCCTCCTCTAGGTC 59.152 57.143 0.00 0.00 46.62 3.85
760 761 1.850345 CCACTCTCCTCCTCTAGGTCT 59.150 57.143 0.00 0.00 46.62 3.85
761 762 3.050089 CCACTCTCCTCCTCTAGGTCTA 58.950 54.545 0.00 0.00 46.62 2.59
762 763 3.072476 CCACTCTCCTCCTCTAGGTCTAG 59.928 56.522 0.00 0.00 46.62 2.43
763 764 2.709397 ACTCTCCTCCTCTAGGTCTAGC 59.291 54.545 0.34 0.00 46.62 3.42
764 765 2.979678 CTCTCCTCCTCTAGGTCTAGCT 59.020 54.545 0.00 0.00 46.62 3.32
765 766 2.976882 TCTCCTCCTCTAGGTCTAGCTC 59.023 54.545 0.00 0.00 46.62 4.09
766 767 2.039879 CTCCTCCTCTAGGTCTAGCTCC 59.960 59.091 0.00 0.00 46.62 4.70
767 768 1.777878 CCTCCTCTAGGTCTAGCTCCA 59.222 57.143 0.00 0.00 40.94 3.86
768 769 2.224769 CCTCCTCTAGGTCTAGCTCCAG 60.225 59.091 0.00 0.00 40.94 3.86
769 770 2.441750 CTCCTCTAGGTCTAGCTCCAGT 59.558 54.545 0.00 0.00 36.34 4.00
770 771 2.440253 TCCTCTAGGTCTAGCTCCAGTC 59.560 54.545 0.00 0.00 36.34 3.51
771 772 2.441750 CCTCTAGGTCTAGCTCCAGTCT 59.558 54.545 0.00 0.00 33.32 3.24
772 773 3.496160 CCTCTAGGTCTAGCTCCAGTCTC 60.496 56.522 0.00 0.00 33.32 3.36
773 774 2.440253 TCTAGGTCTAGCTCCAGTCTCC 59.560 54.545 0.00 0.00 33.32 3.71
774 775 1.304891 AGGTCTAGCTCCAGTCTCCT 58.695 55.000 0.00 0.00 0.00 3.69
775 776 1.214424 AGGTCTAGCTCCAGTCTCCTC 59.786 57.143 0.00 0.00 0.00 3.71
776 777 1.687563 GTCTAGCTCCAGTCTCCTCC 58.312 60.000 0.00 0.00 0.00 4.30
777 778 0.553819 TCTAGCTCCAGTCTCCTCCC 59.446 60.000 0.00 0.00 0.00 4.30
778 779 0.821711 CTAGCTCCAGTCTCCTCCCG 60.822 65.000 0.00 0.00 0.00 5.14
779 780 1.572689 TAGCTCCAGTCTCCTCCCGT 61.573 60.000 0.00 0.00 0.00 5.28
780 781 1.985116 GCTCCAGTCTCCTCCCGTT 60.985 63.158 0.00 0.00 0.00 4.44
781 782 1.893786 CTCCAGTCTCCTCCCGTTG 59.106 63.158 0.00 0.00 0.00 4.10
782 783 2.232298 CTCCAGTCTCCTCCCGTTGC 62.232 65.000 0.00 0.00 0.00 4.17
783 784 2.266055 CAGTCTCCTCCCGTTGCC 59.734 66.667 0.00 0.00 0.00 4.52
784 785 3.003763 AGTCTCCTCCCGTTGCCC 61.004 66.667 0.00 0.00 0.00 5.36
785 786 3.003763 GTCTCCTCCCGTTGCCCT 61.004 66.667 0.00 0.00 0.00 5.19
786 787 2.683933 TCTCCTCCCGTTGCCCTC 60.684 66.667 0.00 0.00 0.00 4.30
787 788 2.685380 CTCCTCCCGTTGCCCTCT 60.685 66.667 0.00 0.00 0.00 3.69
788 789 2.683933 TCCTCCCGTTGCCCTCTC 60.684 66.667 0.00 0.00 0.00 3.20
799 800 0.398239 TGCCCTCTCTCTCTGATGGG 60.398 60.000 0.00 0.00 39.68 4.00
800 801 2.439837 CCCTCTCTCTCTGATGGGC 58.560 63.158 0.00 0.00 33.68 5.36
809 810 1.062658 TCTCTGATGGGCTGATGGAGA 60.063 52.381 0.00 0.00 0.00 3.71
831 832 1.480498 CCTCTTCTCCCTCCTCTAGCC 60.480 61.905 0.00 0.00 0.00 3.93
832 833 0.558712 TCTTCTCCCTCCTCTAGCCC 59.441 60.000 0.00 0.00 0.00 5.19
834 835 2.203567 CTCCCTCCTCTAGCCCCG 60.204 72.222 0.00 0.00 0.00 5.73
840 841 1.448922 CTCCTCTAGCCCCGTTCTCG 61.449 65.000 0.00 0.00 0.00 4.04
857 858 3.971702 GGCCTCCCCTGCAACAGT 61.972 66.667 0.00 0.00 0.00 3.55
858 859 2.360475 GCCTCCCCTGCAACAGTC 60.360 66.667 0.00 0.00 0.00 3.51
859 860 2.352805 CCTCCCCTGCAACAGTCC 59.647 66.667 0.00 0.00 0.00 3.85
860 861 2.528818 CCTCCCCTGCAACAGTCCA 61.529 63.158 0.00 0.00 0.00 4.02
861 862 1.002868 CTCCCCTGCAACAGTCCAG 60.003 63.158 0.00 0.00 0.00 3.86
862 863 2.034687 CCCCTGCAACAGTCCAGG 59.965 66.667 11.61 11.61 46.49 4.45
885 886 1.745864 GCGGAGTCCTCGAGAGTCA 60.746 63.158 15.71 0.00 45.50 3.41
890 891 3.020984 GGAGTCCTCGAGAGTCAAGATT 58.979 50.000 15.71 0.00 45.50 2.40
891 892 3.066203 GGAGTCCTCGAGAGTCAAGATTC 59.934 52.174 15.71 7.48 45.50 2.52
892 893 2.680841 AGTCCTCGAGAGTCAAGATTCG 59.319 50.000 15.71 0.00 34.56 3.34
893 894 1.402259 TCCTCGAGAGTCAAGATTCGC 59.598 52.381 15.71 0.00 33.36 4.70
894 895 1.461778 CTCGAGAGTCAAGATTCGCG 58.538 55.000 6.58 11.30 40.48 5.87
928 929 1.292941 CCTCCTCCTCCTCCTCCTCA 61.293 65.000 0.00 0.00 0.00 3.86
931 932 0.539438 CCTCCTCCTCCTCCTCATCG 60.539 65.000 0.00 0.00 0.00 3.84
946 950 1.826054 ATCGTCCTCTGCTCCCTCG 60.826 63.158 0.00 0.00 0.00 4.63
950 954 4.154347 CCTCTGCTCCCTCGCCAC 62.154 72.222 0.00 0.00 0.00 5.01
1128 1132 1.141234 GCACCTGTACTCCTACGCC 59.859 63.158 0.00 0.00 0.00 5.68
1215 1219 2.360350 TTCGTCTCGGCGTACCCT 60.360 61.111 6.85 0.00 0.00 4.34
1318 1322 3.129300 CGAATCTAGGCGAGGGCA 58.871 61.111 0.00 0.00 42.47 5.36
1535 1539 0.103208 ATCTCCATGAACTCGACGCC 59.897 55.000 0.00 0.00 0.00 5.68
1662 1666 4.969196 CGTGCCCATATCGCGGCT 62.969 66.667 6.13 0.00 45.90 5.52
1764 1900 2.136878 CGTCTCCATCTCCCTGGGG 61.137 68.421 14.00 2.42 38.21 4.96
1881 2017 2.679996 GTCCATGGGTTGGCCACC 60.680 66.667 13.02 10.71 46.01 4.61
1884 2020 1.536174 CCATGGGTTGGCCACCTTT 60.536 57.895 19.69 8.38 46.38 3.11
1893 2029 0.831288 TGGCCACCTTTCACAATGGG 60.831 55.000 0.00 0.00 32.49 4.00
2006 2142 2.047274 AATCGCTGGGGTCACGTG 60.047 61.111 9.94 9.94 0.00 4.49
2055 2191 2.279582 CGAAGCTGGTCTACAACGAT 57.720 50.000 0.00 0.00 0.00 3.73
2076 2212 4.662961 CTGTCCGCGTGCACCTCA 62.663 66.667 12.15 2.86 0.00 3.86
2150 2286 4.738998 TGGGCTTGGTGCGATGGG 62.739 66.667 0.00 0.00 44.05 4.00
2168 2304 1.612463 GGGCCATCAGATGAAGATTGC 59.388 52.381 12.41 5.32 34.44 3.56
2229 2365 2.572284 GAGACGGACGAACCCCTG 59.428 66.667 0.00 0.00 34.64 4.45
2231 2367 2.210341 GAGACGGACGAACCCCTGAC 62.210 65.000 0.00 0.00 34.64 3.51
2331 2467 2.228914 GCCGACGGCTACGATCAAC 61.229 63.158 31.30 0.00 46.69 3.18
2350 2486 1.533033 TTCCAGCAGACCGTCCTCA 60.533 57.895 0.00 0.00 0.00 3.86
2497 2633 2.699768 CCGTTGGCGTACGTAGGGA 61.700 63.158 17.90 0.00 39.81 4.20
2498 2634 1.226491 CGTTGGCGTACGTAGGGAG 60.226 63.158 17.90 0.91 36.80 4.30
2510 2646 1.229400 TAGGGAGGACGGCTTTGGT 60.229 57.895 0.00 0.00 0.00 3.67
2661 2797 1.868997 CGCGGTCAACAATCTGCTT 59.131 52.632 0.00 0.00 34.23 3.91
2913 3079 2.431771 CCGTCGTTCATCGCCACA 60.432 61.111 0.00 0.00 39.67 4.17
3177 3349 1.757306 CAGTCACCAGGTCAGGCTT 59.243 57.895 0.00 0.00 0.00 4.35
3231 3403 5.391310 GGTGCTGTGAACTTGATCTTATGTG 60.391 44.000 0.00 0.00 0.00 3.21
3283 3455 7.875554 GGCTTAAGGAGTCAGAAATCCTATTAG 59.124 40.741 4.29 5.61 45.39 1.73
3284 3456 8.425703 GCTTAAGGAGTCAGAAATCCTATTAGT 58.574 37.037 4.29 0.00 45.39 2.24
3285 3457 9.757227 CTTAAGGAGTCAGAAATCCTATTAGTG 57.243 37.037 5.97 0.00 45.39 2.74
3286 3458 6.168270 AGGAGTCAGAAATCCTATTAGTGC 57.832 41.667 3.92 0.00 44.28 4.40
3289 3461 6.408662 GGAGTCAGAAATCCTATTAGTGCCTT 60.409 42.308 0.00 0.00 32.51 4.35
3290 3462 6.352516 AGTCAGAAATCCTATTAGTGCCTTG 58.647 40.000 0.00 0.00 0.00 3.61
3371 3549 5.186992 TCATCCTACTAGTTGCTTGTGCTTA 59.813 40.000 0.00 0.00 40.48 3.09
3380 3558 6.088016 AGTTGCTTGTGCTTATCAATTTGA 57.912 33.333 0.75 0.75 40.48 2.69
3416 3594 4.630069 GCTTGTGCTTATTAGTTCCTTCGA 59.370 41.667 0.00 0.00 36.03 3.71
3420 3598 7.766219 TGTGCTTATTAGTTCCTTCGATTAC 57.234 36.000 0.00 0.00 0.00 1.89
3437 3615 5.705441 TCGATTACCTTTTGTGCTCTTCATT 59.295 36.000 0.00 0.00 0.00 2.57
3438 3616 6.206634 TCGATTACCTTTTGTGCTCTTCATTT 59.793 34.615 0.00 0.00 0.00 2.32
3441 3619 8.593492 ATTACCTTTTGTGCTCTTCATTTTTC 57.407 30.769 0.00 0.00 0.00 2.29
3442 3620 6.225981 ACCTTTTGTGCTCTTCATTTTTCT 57.774 33.333 0.00 0.00 0.00 2.52
3443 3621 6.643388 ACCTTTTGTGCTCTTCATTTTTCTT 58.357 32.000 0.00 0.00 0.00 2.52
3449 3627 7.992180 TGTGCTCTTCATTTTTCTTTTCTTC 57.008 32.000 0.00 0.00 0.00 2.87
3464 3642 6.503524 TCTTTTCTTCCTTTTCCATTGAACG 58.496 36.000 0.00 0.00 0.00 3.95
3466 3644 3.153919 TCTTCCTTTTCCATTGAACGGG 58.846 45.455 0.00 0.00 0.00 5.28
3474 3652 1.697432 TCCATTGAACGGGTTGAGTCT 59.303 47.619 0.00 0.00 0.00 3.24
3498 3676 2.287547 GCGACATGTGTTGACCATTGTT 60.288 45.455 1.15 0.00 0.00 2.83
3523 3702 1.078143 CACTTGGTGAGCCCCTAGC 60.078 63.158 0.00 0.00 44.25 3.42
3524 3703 2.301738 ACTTGGTGAGCCCCTAGCC 61.302 63.158 0.00 0.00 45.47 3.93
3525 3704 1.997874 CTTGGTGAGCCCCTAGCCT 60.998 63.158 0.00 0.00 45.47 4.58
3526 3705 0.691078 CTTGGTGAGCCCCTAGCCTA 60.691 60.000 0.00 0.00 45.47 3.93
3527 3706 0.691078 TTGGTGAGCCCCTAGCCTAG 60.691 60.000 0.00 0.00 45.47 3.02
3528 3707 1.233369 GGTGAGCCCCTAGCCTAGA 59.767 63.158 0.00 0.00 45.47 2.43
3529 3708 0.830023 GGTGAGCCCCTAGCCTAGAG 60.830 65.000 0.00 0.00 45.47 2.43
3531 3710 0.999493 TGAGCCCCTAGCCTAGAGGA 60.999 60.000 3.03 0.00 45.47 3.71
3533 3712 1.911269 GCCCCTAGCCTAGAGGAGC 60.911 68.421 3.03 4.29 35.99 4.70
3534 3713 1.857777 CCCCTAGCCTAGAGGAGCT 59.142 63.158 0.00 0.00 43.20 4.09
3535 3714 0.541764 CCCCTAGCCTAGAGGAGCTG 60.542 65.000 0.00 0.00 40.28 4.24
3536 3715 0.541764 CCCTAGCCTAGAGGAGCTGG 60.542 65.000 0.00 0.00 40.28 4.85
3542 3738 1.965318 GCCTAGAGGAGCTGGGTGTAA 60.965 57.143 0.00 0.00 46.41 2.41
3558 3754 4.585879 GGTGTAAGCCAAACTGAATCCTA 58.414 43.478 0.00 0.00 0.00 2.94
3579 3775 2.330041 CGGTGTTTGGCCGTGTTC 59.670 61.111 0.00 0.00 43.84 3.18
3580 3776 2.473760 CGGTGTTTGGCCGTGTTCA 61.474 57.895 0.00 0.00 43.84 3.18
3581 3777 1.358759 GGTGTTTGGCCGTGTTCAG 59.641 57.895 0.00 0.00 0.00 3.02
3582 3778 1.098712 GGTGTTTGGCCGTGTTCAGA 61.099 55.000 0.00 0.00 0.00 3.27
3583 3779 0.307760 GTGTTTGGCCGTGTTCAGAG 59.692 55.000 0.00 0.00 0.00 3.35
3584 3780 0.817634 TGTTTGGCCGTGTTCAGAGG 60.818 55.000 0.00 0.00 0.00 3.69
3620 3816 7.357303 GGAAGTTTAAGTTTTCGAGCATTGTA 58.643 34.615 0.00 0.00 0.00 2.41
3683 3881 2.724977 TGGTTGTAGAAGAGCTCGTG 57.275 50.000 6.97 0.00 0.00 4.35
3704 3902 0.874390 CAACTCGATTGGTGTGGGTG 59.126 55.000 0.00 0.00 34.34 4.61
3742 3949 9.719355 TGACATGTGAATTTATACTTACACAGT 57.281 29.630 1.15 0.00 40.58 3.55
3802 4009 2.109425 AAAACGATGGTAGCCCTCAC 57.891 50.000 0.00 0.00 0.00 3.51
3809 4016 2.154567 TGGTAGCCCTCACGTTAGAT 57.845 50.000 0.00 0.00 0.00 1.98
3819 4026 0.719465 CACGTTAGATGACGGCAACC 59.281 55.000 0.00 0.00 46.77 3.77
3833 4040 2.038269 CAACCGGGCAACGCATAGT 61.038 57.895 6.32 0.00 42.52 2.12
3836 4043 1.153529 CCGGGCAACGCATAGTACA 60.154 57.895 0.00 0.00 42.52 2.90
3863 4070 3.873952 ACTCACAGCAACAAAGAAGAGAC 59.126 43.478 0.00 0.00 0.00 3.36
3872 4079 2.434702 ACAAAGAAGAGACGAACCAGGT 59.565 45.455 0.00 0.00 0.00 4.00
3886 4093 1.987855 CAGGTTAGGAGGCCCACGA 60.988 63.158 0.00 0.00 33.88 4.35
3903 4110 0.171007 CGAAAATTGCGGCAGTGGAT 59.829 50.000 1.67 0.00 0.00 3.41
3983 4191 4.100344 TGGAAAGATAAGGCGCATGTACTA 59.900 41.667 10.83 0.00 0.00 1.82
4080 4292 4.078863 ACTCCTAGCTAGACCCATTTCTCT 60.079 45.833 22.70 0.00 0.00 3.10
4092 4304 0.393537 ATTTCTCTTCGCCCCAGCAG 60.394 55.000 0.00 0.00 39.83 4.24
4096 4308 2.985282 CTTCGCCCCAGCAGCAAA 60.985 61.111 0.00 0.00 39.83 3.68
4098 4310 1.880819 CTTCGCCCCAGCAGCAAAAT 61.881 55.000 0.00 0.00 39.83 1.82
4103 4315 1.812235 CCCCAGCAGCAAAATTTTCC 58.188 50.000 0.00 0.00 0.00 3.13
4116 4328 5.358922 CAAAATTTTCCTTCACCTGCTTGA 58.641 37.500 0.00 0.00 0.00 3.02
4160 4372 2.980233 GCCAAGGTTGCAGCGACT 60.980 61.111 12.78 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.379243 CCGGTCGAGGTTGCAGCT 62.379 66.667 0.00 0.00 0.00 4.24
6 7 2.990967 TTACGGCCGGTCGAGGTT 60.991 61.111 38.47 16.04 0.00 3.50
8 9 4.842091 CGTTACGGCCGGTCGAGG 62.842 72.222 38.47 16.05 0.00 4.63
9 10 4.842091 CCGTTACGGCCGGTCGAG 62.842 72.222 38.47 21.72 41.17 4.04
18 19 3.753070 GGCTCGAGCTCCGTTACGG 62.753 68.421 34.46 18.78 42.62 4.02
19 20 2.278013 GGCTCGAGCTCCGTTACG 60.278 66.667 34.46 0.00 41.70 3.18
20 21 2.104530 GGGCTCGAGCTCCGTTAC 59.895 66.667 34.46 17.20 41.70 2.50
21 22 1.537814 TTTGGGCTCGAGCTCCGTTA 61.538 55.000 33.48 13.23 41.95 3.18
22 23 2.185310 ATTTGGGCTCGAGCTCCGTT 62.185 55.000 33.48 15.49 41.95 4.44
23 24 2.579684 GATTTGGGCTCGAGCTCCGT 62.580 60.000 33.48 19.42 41.95 4.69
24 25 1.884926 GATTTGGGCTCGAGCTCCG 60.885 63.158 33.48 0.00 41.95 4.63
25 26 1.524849 GGATTTGGGCTCGAGCTCC 60.525 63.158 33.48 30.35 41.95 4.70
26 27 0.179034 ATGGATTTGGGCTCGAGCTC 60.179 55.000 34.46 32.66 43.24 4.09
27 28 0.465097 CATGGATTTGGGCTCGAGCT 60.465 55.000 34.46 16.68 41.70 4.09
28 29 1.450531 CCATGGATTTGGGCTCGAGC 61.451 60.000 29.38 29.38 41.14 5.03
29 30 1.450531 GCCATGGATTTGGGCTCGAG 61.451 60.000 18.40 8.45 44.32 4.04
30 31 1.453745 GCCATGGATTTGGGCTCGA 60.454 57.895 18.40 0.00 44.32 4.04
31 32 3.122850 GCCATGGATTTGGGCTCG 58.877 61.111 18.40 0.00 44.32 5.03
35 36 1.111116 ATCGCTGCCATGGATTTGGG 61.111 55.000 18.40 9.90 37.24 4.12
36 37 0.313043 GATCGCTGCCATGGATTTGG 59.687 55.000 18.40 0.00 39.94 3.28
37 38 1.001706 CAGATCGCTGCCATGGATTTG 60.002 52.381 18.40 0.89 34.95 2.32
38 39 1.315690 CAGATCGCTGCCATGGATTT 58.684 50.000 18.40 0.00 34.95 2.17
39 40 3.016997 CAGATCGCTGCCATGGATT 57.983 52.632 18.40 0.00 34.95 3.01
40 41 4.794199 CAGATCGCTGCCATGGAT 57.206 55.556 18.40 0.00 34.95 3.41
51 52 2.732468 CATCTCCGGCGCAGATCG 60.732 66.667 11.02 3.21 42.12 3.69
52 53 3.040763 GCATCTCCGGCGCAGATC 61.041 66.667 11.02 2.54 0.00 2.75
53 54 3.853487 TGCATCTCCGGCGCAGAT 61.853 61.111 7.68 7.68 0.00 2.90
54 55 4.819761 GTGCATCTCCGGCGCAGA 62.820 66.667 10.83 1.62 41.27 4.26
100 101 3.746949 GATCCCCTGTGGCTCGCAG 62.747 68.421 8.32 8.32 41.13 5.18
101 102 3.785859 GATCCCCTGTGGCTCGCA 61.786 66.667 0.00 0.00 0.00 5.10
102 103 3.453070 GAGATCCCCTGTGGCTCGC 62.453 68.421 0.00 0.00 0.00 5.03
103 104 2.818132 GAGATCCCCTGTGGCTCG 59.182 66.667 0.00 0.00 0.00 5.03
104 105 2.818132 CGAGATCCCCTGTGGCTC 59.182 66.667 0.00 0.00 0.00 4.70
105 106 3.474570 GCGAGATCCCCTGTGGCT 61.475 66.667 0.00 0.00 0.00 4.75
106 107 4.554036 GGCGAGATCCCCTGTGGC 62.554 72.222 0.00 0.00 0.00 5.01
107 108 4.227134 CGGCGAGATCCCCTGTGG 62.227 72.222 0.00 0.00 0.00 4.17
108 109 4.227134 CCGGCGAGATCCCCTGTG 62.227 72.222 9.30 0.00 0.00 3.66
109 110 4.458829 TCCGGCGAGATCCCCTGT 62.459 66.667 9.30 0.00 0.00 4.00
110 111 3.610669 CTCCGGCGAGATCCCCTG 61.611 72.222 9.30 0.00 38.52 4.45
111 112 3.822035 TCTCCGGCGAGATCCCCT 61.822 66.667 9.30 0.00 40.34 4.79
137 138 3.798511 CTTCTTCCTCGGGCCCCC 61.799 72.222 18.66 0.00 0.00 5.40
138 139 2.603652 AACTTCTTCCTCGGGCCCC 61.604 63.158 18.66 0.00 0.00 5.80
139 140 1.377333 CAACTTCTTCCTCGGGCCC 60.377 63.158 13.57 13.57 0.00 5.80
140 141 1.377333 CCAACTTCTTCCTCGGGCC 60.377 63.158 0.00 0.00 0.00 5.80
141 142 1.377333 CCCAACTTCTTCCTCGGGC 60.377 63.158 0.00 0.00 0.00 6.13
142 143 1.299976 CCCCAACTTCTTCCTCGGG 59.700 63.158 0.00 0.00 0.00 5.14
143 144 1.272807 TACCCCAACTTCTTCCTCGG 58.727 55.000 0.00 0.00 0.00 4.63
144 145 3.629142 ATTACCCCAACTTCTTCCTCG 57.371 47.619 0.00 0.00 0.00 4.63
145 146 7.956328 ATAAAATTACCCCAACTTCTTCCTC 57.044 36.000 0.00 0.00 0.00 3.71
146 147 8.736097 AAATAAAATTACCCCAACTTCTTCCT 57.264 30.769 0.00 0.00 0.00 3.36
147 148 9.787435 AAAAATAAAATTACCCCAACTTCTTCC 57.213 29.630 0.00 0.00 0.00 3.46
172 173 1.885887 CGGTTGGATCTGGAGCAAAAA 59.114 47.619 0.00 0.00 0.00 1.94
173 174 1.533625 CGGTTGGATCTGGAGCAAAA 58.466 50.000 0.00 0.00 0.00 2.44
174 175 0.960364 GCGGTTGGATCTGGAGCAAA 60.960 55.000 0.00 0.00 0.00 3.68
175 176 1.377202 GCGGTTGGATCTGGAGCAA 60.377 57.895 0.00 0.00 0.00 3.91
176 177 2.268920 GCGGTTGGATCTGGAGCA 59.731 61.111 0.00 0.00 0.00 4.26
177 178 2.514824 GGCGGTTGGATCTGGAGC 60.515 66.667 0.00 0.00 0.00 4.70
178 179 2.190578 GGGCGGTTGGATCTGGAG 59.809 66.667 0.00 0.00 0.00 3.86
179 180 3.781307 CGGGCGGTTGGATCTGGA 61.781 66.667 0.00 0.00 0.00 3.86
181 182 4.776322 TGCGGGCGGTTGGATCTG 62.776 66.667 0.00 0.00 0.00 2.90
182 183 4.778143 GTGCGGGCGGTTGGATCT 62.778 66.667 0.00 0.00 0.00 2.75
205 206 3.418068 GCCATAGCCGCTCGATGC 61.418 66.667 0.00 0.00 38.57 3.91
243 244 0.611062 GAGGTTTTGGGGTAGGGCAC 60.611 60.000 0.00 0.00 0.00 5.01
244 245 0.774491 AGAGGTTTTGGGGTAGGGCA 60.774 55.000 0.00 0.00 0.00 5.36
245 246 0.408309 AAGAGGTTTTGGGGTAGGGC 59.592 55.000 0.00 0.00 0.00 5.19
246 247 1.891011 GCAAGAGGTTTTGGGGTAGGG 60.891 57.143 0.00 0.00 0.00 3.53
247 248 1.545841 GCAAGAGGTTTTGGGGTAGG 58.454 55.000 0.00 0.00 0.00 3.18
248 249 1.165270 CGCAAGAGGTTTTGGGGTAG 58.835 55.000 0.00 0.00 37.36 3.18
249 250 0.766131 TCGCAAGAGGTTTTGGGGTA 59.234 50.000 3.50 0.00 45.01 3.69
250 251 1.534697 TCGCAAGAGGTTTTGGGGT 59.465 52.632 3.50 0.00 45.01 4.95
251 252 4.492604 TCGCAAGAGGTTTTGGGG 57.507 55.556 3.50 0.00 45.01 4.96
272 273 0.389166 GAGGACTCGTGCAAGAGGTG 60.389 60.000 29.26 9.85 42.31 4.00
273 274 1.536943 GGAGGACTCGTGCAAGAGGT 61.537 60.000 29.26 16.98 42.31 3.85
274 275 1.216710 GGAGGACTCGTGCAAGAGG 59.783 63.158 29.26 14.23 42.31 3.69
275 276 1.216710 GGGAGGACTCGTGCAAGAG 59.783 63.158 25.45 25.45 43.56 2.85
276 277 2.283529 GGGGAGGACTCGTGCAAGA 61.284 63.158 1.47 1.47 0.00 3.02
277 278 2.232298 GAGGGGAGGACTCGTGCAAG 62.232 65.000 0.00 0.00 0.00 4.01
278 279 2.203788 AGGGGAGGACTCGTGCAA 60.204 61.111 0.00 0.00 0.00 4.08
279 280 2.680352 GAGGGGAGGACTCGTGCA 60.680 66.667 0.00 0.00 0.00 4.57
280 281 3.462678 GGAGGGGAGGACTCGTGC 61.463 72.222 0.00 0.00 35.82 5.34
281 282 0.978146 AATGGAGGGGAGGACTCGTG 60.978 60.000 0.00 0.00 35.82 4.35
282 283 0.688087 GAATGGAGGGGAGGACTCGT 60.688 60.000 0.00 0.00 35.82 4.18
283 284 0.397816 AGAATGGAGGGGAGGACTCG 60.398 60.000 0.00 0.00 35.82 4.18
284 285 1.488393 CAAGAATGGAGGGGAGGACTC 59.512 57.143 0.00 0.00 0.00 3.36
285 286 1.203492 ACAAGAATGGAGGGGAGGACT 60.203 52.381 0.00 0.00 0.00 3.85
286 287 1.210722 GACAAGAATGGAGGGGAGGAC 59.789 57.143 0.00 0.00 0.00 3.85
287 288 1.584724 GACAAGAATGGAGGGGAGGA 58.415 55.000 0.00 0.00 0.00 3.71
288 289 0.179000 CGACAAGAATGGAGGGGAGG 59.821 60.000 0.00 0.00 0.00 4.30
289 290 0.462759 GCGACAAGAATGGAGGGGAG 60.463 60.000 0.00 0.00 0.00 4.30
290 291 1.602237 GCGACAAGAATGGAGGGGA 59.398 57.895 0.00 0.00 0.00 4.81
291 292 1.452108 GGCGACAAGAATGGAGGGG 60.452 63.158 0.00 0.00 0.00 4.79
292 293 0.035056 AAGGCGACAAGAATGGAGGG 60.035 55.000 0.00 0.00 0.00 4.30
293 294 1.373570 GAAGGCGACAAGAATGGAGG 58.626 55.000 0.00 0.00 0.00 4.30
294 295 1.065854 AGGAAGGCGACAAGAATGGAG 60.066 52.381 0.00 0.00 0.00 3.86
295 296 0.984230 AGGAAGGCGACAAGAATGGA 59.016 50.000 0.00 0.00 0.00 3.41
296 297 1.373570 GAGGAAGGCGACAAGAATGG 58.626 55.000 0.00 0.00 0.00 3.16
297 298 1.373570 GGAGGAAGGCGACAAGAATG 58.626 55.000 0.00 0.00 0.00 2.67
298 299 0.108138 CGGAGGAAGGCGACAAGAAT 60.108 55.000 0.00 0.00 0.00 2.40
299 300 1.292223 CGGAGGAAGGCGACAAGAA 59.708 57.895 0.00 0.00 0.00 2.52
300 301 1.874345 GACGGAGGAAGGCGACAAGA 61.874 60.000 0.00 0.00 0.00 3.02
301 302 1.446272 GACGGAGGAAGGCGACAAG 60.446 63.158 0.00 0.00 0.00 3.16
302 303 2.654877 GACGGAGGAAGGCGACAA 59.345 61.111 0.00 0.00 0.00 3.18
303 304 3.379445 GGACGGAGGAAGGCGACA 61.379 66.667 0.00 0.00 0.00 4.35
304 305 4.493747 CGGACGGAGGAAGGCGAC 62.494 72.222 0.00 0.00 0.00 5.19
306 307 4.493747 GACGGACGGAGGAAGGCG 62.494 72.222 0.00 0.00 0.00 5.52
307 308 3.379445 TGACGGACGGAGGAAGGC 61.379 66.667 0.00 0.00 0.00 4.35
308 309 2.572284 GTGACGGACGGAGGAAGG 59.428 66.667 0.00 0.00 0.00 3.46
309 310 2.178521 CGTGACGGACGGAGGAAG 59.821 66.667 0.00 0.00 44.85 3.46
320 321 2.202557 TGCGCATAGACCGTGACG 60.203 61.111 5.66 0.00 0.00 4.35
321 322 1.413767 CTGTGCGCATAGACCGTGAC 61.414 60.000 28.04 4.22 0.00 3.67
322 323 1.153842 CTGTGCGCATAGACCGTGA 60.154 57.895 28.04 0.00 0.00 4.35
323 324 2.802667 GCTGTGCGCATAGACCGTG 61.803 63.158 34.65 11.19 38.92 4.94
324 325 2.509336 GCTGTGCGCATAGACCGT 60.509 61.111 34.65 0.00 38.92 4.83
325 326 3.264897 GGCTGTGCGCATAGACCG 61.265 66.667 34.65 12.32 41.67 4.79
326 327 2.897350 GGGCTGTGCGCATAGACC 60.897 66.667 38.75 38.75 40.64 3.85
327 328 3.264897 CGGGCTGTGCGCATAGAC 61.265 66.667 34.65 32.44 41.67 2.59
344 345 4.043200 GGTGGGTTTGCGCTCTGC 62.043 66.667 9.73 0.00 46.70 4.26
345 346 3.726517 CGGTGGGTTTGCGCTCTG 61.727 66.667 9.73 0.00 0.00 3.35
352 353 3.726517 CTCGCTGCGGTGGGTTTG 61.727 66.667 23.03 0.00 0.00 2.93
353 354 3.469863 TTCTCGCTGCGGTGGGTTT 62.470 57.895 23.03 0.00 0.00 3.27
354 355 3.936203 TTCTCGCTGCGGTGGGTT 61.936 61.111 23.03 0.00 0.00 4.11
355 356 4.681978 GTTCTCGCTGCGGTGGGT 62.682 66.667 23.03 0.00 0.00 4.51
389 390 2.789917 CGAGTGGTACGACCGGAG 59.210 66.667 9.46 3.87 42.58 4.63
390 391 3.434319 GCGAGTGGTACGACCGGA 61.434 66.667 9.46 0.00 42.58 5.14
391 392 3.740397 TGCGAGTGGTACGACCGG 61.740 66.667 16.23 0.00 42.58 5.28
392 393 2.503375 GTGCGAGTGGTACGACCG 60.503 66.667 4.19 9.07 42.58 4.79
393 394 1.154073 GAGTGCGAGTGGTACGACC 60.154 63.158 4.19 0.00 39.22 4.79
394 395 1.511464 CGAGTGCGAGTGGTACGAC 60.511 63.158 0.00 0.00 40.82 4.34
395 396 2.865308 CGAGTGCGAGTGGTACGA 59.135 61.111 0.00 0.00 40.82 3.43
396 397 2.874780 GCGAGTGCGAGTGGTACG 60.875 66.667 0.00 0.00 40.82 3.67
415 416 0.108615 AACATCCAGTCGAGAAGCGG 60.109 55.000 0.00 0.00 41.33 5.52
416 417 0.994995 CAACATCCAGTCGAGAAGCG 59.005 55.000 0.00 0.00 42.69 4.68
417 418 1.996191 GTCAACATCCAGTCGAGAAGC 59.004 52.381 0.00 0.00 0.00 3.86
418 419 3.506810 GAGTCAACATCCAGTCGAGAAG 58.493 50.000 0.00 0.00 0.00 2.85
419 420 2.231478 GGAGTCAACATCCAGTCGAGAA 59.769 50.000 0.00 0.00 36.79 2.87
420 421 1.819288 GGAGTCAACATCCAGTCGAGA 59.181 52.381 0.00 0.00 36.79 4.04
421 422 1.821753 AGGAGTCAACATCCAGTCGAG 59.178 52.381 0.00 0.00 39.47 4.04
422 423 1.819288 GAGGAGTCAACATCCAGTCGA 59.181 52.381 0.00 0.00 39.47 4.20
423 424 1.134965 GGAGGAGTCAACATCCAGTCG 60.135 57.143 0.00 0.00 40.01 4.18
424 425 1.208293 GGGAGGAGTCAACATCCAGTC 59.792 57.143 0.00 0.00 41.73 3.51
425 426 1.280457 GGGAGGAGTCAACATCCAGT 58.720 55.000 0.00 0.00 41.73 4.00
426 427 1.279496 TGGGAGGAGTCAACATCCAG 58.721 55.000 0.00 0.00 41.73 3.86
427 428 1.839994 GATGGGAGGAGTCAACATCCA 59.160 52.381 0.00 0.00 41.73 3.41
428 429 1.202580 CGATGGGAGGAGTCAACATCC 60.203 57.143 0.00 0.00 39.61 3.51
429 430 1.808133 GCGATGGGAGGAGTCAACATC 60.808 57.143 0.00 0.00 36.22 3.06
430 431 0.179000 GCGATGGGAGGAGTCAACAT 59.821 55.000 0.00 0.00 0.00 2.71
431 432 1.596934 GCGATGGGAGGAGTCAACA 59.403 57.895 0.00 0.00 0.00 3.33
432 433 1.519455 CGCGATGGGAGGAGTCAAC 60.519 63.158 0.00 0.00 0.00 3.18
433 434 1.043116 ATCGCGATGGGAGGAGTCAA 61.043 55.000 23.04 0.00 0.00 3.18
434 435 1.455773 ATCGCGATGGGAGGAGTCA 60.456 57.895 23.04 0.00 0.00 3.41
435 436 1.006805 CATCGCGATGGGAGGAGTC 60.007 63.158 35.80 0.00 35.24 3.36
436 437 1.043116 TTCATCGCGATGGGAGGAGT 61.043 55.000 40.00 8.31 36.73 3.85
437 438 0.598680 GTTCATCGCGATGGGAGGAG 60.599 60.000 40.00 19.62 36.73 3.69
438 439 1.441729 GTTCATCGCGATGGGAGGA 59.558 57.895 40.00 23.39 39.24 3.71
439 440 1.951130 CGTTCATCGCGATGGGAGG 60.951 63.158 40.00 29.95 39.24 4.30
440 441 1.951130 CCGTTCATCGCGATGGGAG 60.951 63.158 40.00 30.22 39.24 4.30
441 442 2.106131 CCGTTCATCGCGATGGGA 59.894 61.111 40.00 28.69 39.24 4.37
442 443 1.951130 CTCCGTTCATCGCGATGGG 60.951 63.158 40.00 33.25 39.24 4.00
443 444 2.589492 GCTCCGTTCATCGCGATGG 61.589 63.158 40.00 28.02 39.24 3.51
444 445 1.589993 AGCTCCGTTCATCGCGATG 60.590 57.895 37.19 37.19 40.09 3.84
445 446 1.589993 CAGCTCCGTTCATCGCGAT 60.590 57.895 17.62 17.62 38.35 4.58
446 447 2.202610 CAGCTCCGTTCATCGCGA 60.203 61.111 13.09 13.09 38.35 5.87
447 448 3.918220 GCAGCTCCGTTCATCGCG 61.918 66.667 0.00 0.00 38.35 5.87
448 449 3.567797 GGCAGCTCCGTTCATCGC 61.568 66.667 0.00 0.00 38.35 4.58
449 450 1.522355 ATGGCAGCTCCGTTCATCG 60.522 57.895 0.00 0.00 37.80 3.84
450 451 1.442526 CCATGGCAGCTCCGTTCATC 61.443 60.000 0.00 0.00 37.80 2.92
451 452 1.452651 CCATGGCAGCTCCGTTCAT 60.453 57.895 0.00 0.00 37.80 2.57
452 453 2.046023 CCATGGCAGCTCCGTTCA 60.046 61.111 0.00 0.00 37.80 3.18
453 454 3.512516 GCCATGGCAGCTCCGTTC 61.513 66.667 32.08 0.00 41.49 3.95
456 457 4.889112 ATGGCCATGGCAGCTCCG 62.889 66.667 36.56 0.00 42.43 4.63
457 458 3.224324 CATGGCCATGGCAGCTCC 61.224 66.667 36.56 20.03 42.43 4.70
458 459 3.912907 GCATGGCCATGGCAGCTC 61.913 66.667 39.72 22.44 42.43 4.09
461 462 3.896133 GTCGCATGGCCATGGCAG 61.896 66.667 39.72 25.60 42.43 4.85
464 465 3.520862 GTGGTCGCATGGCCATGG 61.521 66.667 39.72 30.16 39.16 3.66
465 466 2.751036 TGTGGTCGCATGGCCATG 60.751 61.111 36.80 36.80 41.60 3.66
466 467 2.751436 GTGTGGTCGCATGGCCAT 60.751 61.111 14.09 14.09 37.09 4.40
467 468 4.262089 TGTGTGGTCGCATGGCCA 62.262 61.111 8.56 8.56 0.00 5.36
468 469 3.737172 GTGTGTGGTCGCATGGCC 61.737 66.667 0.00 0.00 36.45 5.36
469 470 2.977456 TGTGTGTGGTCGCATGGC 60.977 61.111 0.00 0.00 36.45 4.40
470 471 1.891449 TGTGTGTGTGGTCGCATGG 60.891 57.895 0.00 0.00 36.45 3.66
471 472 1.279539 GTGTGTGTGTGGTCGCATG 59.720 57.895 0.00 0.00 36.45 4.06
472 473 1.153269 TGTGTGTGTGTGGTCGCAT 60.153 52.632 0.00 0.00 36.45 4.73
473 474 2.103647 GTGTGTGTGTGTGGTCGCA 61.104 57.895 0.00 0.00 0.00 5.10
474 475 2.707039 GTGTGTGTGTGTGGTCGC 59.293 61.111 0.00 0.00 0.00 5.19
475 476 3.002673 CGTGTGTGTGTGTGGTCG 58.997 61.111 0.00 0.00 0.00 4.79
476 477 2.707039 GCGTGTGTGTGTGTGGTC 59.293 61.111 0.00 0.00 0.00 4.02
477 478 3.192230 CGCGTGTGTGTGTGTGGT 61.192 61.111 0.00 0.00 0.00 4.16
478 479 4.589700 GCGCGTGTGTGTGTGTGG 62.590 66.667 8.43 0.00 0.00 4.17
479 480 4.918060 CGCGCGTGTGTGTGTGTG 62.918 66.667 24.19 0.00 0.00 3.82
495 496 4.742201 CCCAGCGGACCTGTCACG 62.742 72.222 0.00 2.24 40.06 4.35
496 497 3.626924 ACCCAGCGGACCTGTCAC 61.627 66.667 0.00 0.00 40.06 3.67
497 498 3.625897 CACCCAGCGGACCTGTCA 61.626 66.667 0.00 0.00 40.06 3.58
507 508 2.010582 TTCGTTTTGTGGCACCCAGC 62.011 55.000 16.26 2.51 44.65 4.85
508 509 0.248866 GTTCGTTTTGTGGCACCCAG 60.249 55.000 16.26 2.34 32.34 4.45
509 510 1.810532 GTTCGTTTTGTGGCACCCA 59.189 52.632 16.26 0.00 0.00 4.51
510 511 1.298788 CGTTCGTTTTGTGGCACCC 60.299 57.895 16.26 0.00 0.00 4.61
511 512 0.099082 TTCGTTCGTTTTGTGGCACC 59.901 50.000 16.26 0.00 0.00 5.01
512 513 1.062880 TCTTCGTTCGTTTTGTGGCAC 59.937 47.619 11.55 11.55 0.00 5.01
513 514 1.370609 TCTTCGTTCGTTTTGTGGCA 58.629 45.000 0.00 0.00 0.00 4.92
514 515 2.681152 ATCTTCGTTCGTTTTGTGGC 57.319 45.000 0.00 0.00 0.00 5.01
515 516 4.203950 TCAATCTTCGTTCGTTTTGTGG 57.796 40.909 0.00 0.00 0.00 4.17
516 517 5.025190 TGTTCAATCTTCGTTCGTTTTGTG 58.975 37.500 0.00 0.00 0.00 3.33
517 518 5.025826 GTGTTCAATCTTCGTTCGTTTTGT 58.974 37.500 0.00 0.00 0.00 2.83
518 519 4.436523 GGTGTTCAATCTTCGTTCGTTTTG 59.563 41.667 0.00 0.00 0.00 2.44
519 520 4.594136 GGTGTTCAATCTTCGTTCGTTTT 58.406 39.130 0.00 0.00 0.00 2.43
520 521 3.302870 CGGTGTTCAATCTTCGTTCGTTT 60.303 43.478 0.00 0.00 0.00 3.60
521 522 2.220133 CGGTGTTCAATCTTCGTTCGTT 59.780 45.455 0.00 0.00 0.00 3.85
522 523 1.790623 CGGTGTTCAATCTTCGTTCGT 59.209 47.619 0.00 0.00 0.00 3.85
523 524 1.461888 GCGGTGTTCAATCTTCGTTCG 60.462 52.381 0.00 0.00 0.00 3.95
524 525 1.529438 TGCGGTGTTCAATCTTCGTTC 59.471 47.619 0.00 0.00 0.00 3.95
525 526 1.263217 GTGCGGTGTTCAATCTTCGTT 59.737 47.619 0.00 0.00 0.00 3.85
526 527 0.865769 GTGCGGTGTTCAATCTTCGT 59.134 50.000 0.00 0.00 0.00 3.85
527 528 1.136252 CAGTGCGGTGTTCAATCTTCG 60.136 52.381 0.00 0.00 0.00 3.79
528 529 1.197721 CCAGTGCGGTGTTCAATCTTC 59.802 52.381 0.00 0.00 0.00 2.87
529 530 1.238439 CCAGTGCGGTGTTCAATCTT 58.762 50.000 0.00 0.00 0.00 2.40
530 531 2.932663 CCAGTGCGGTGTTCAATCT 58.067 52.632 0.00 0.00 0.00 2.40
540 541 3.046087 CAGCTCACACCAGTGCGG 61.046 66.667 0.00 0.00 45.49 5.69
541 542 2.280389 ACAGCTCACACCAGTGCG 60.280 61.111 0.00 0.00 45.49 5.34
542 543 2.256591 CCACAGCTCACACCAGTGC 61.257 63.158 0.00 0.00 45.49 4.40
544 545 1.146930 CACCACAGCTCACACCAGT 59.853 57.895 0.00 0.00 0.00 4.00
545 546 2.256591 GCACCACAGCTCACACCAG 61.257 63.158 0.00 0.00 0.00 4.00
546 547 2.203195 GCACCACAGCTCACACCA 60.203 61.111 0.00 0.00 0.00 4.17
547 548 1.601759 ATGCACCACAGCTCACACC 60.602 57.895 0.00 0.00 34.99 4.16
548 549 1.577922 CATGCACCACAGCTCACAC 59.422 57.895 0.00 0.00 34.99 3.82
549 550 2.263021 GCATGCACCACAGCTCACA 61.263 57.895 14.21 0.00 34.99 3.58
550 551 2.564975 GCATGCACCACAGCTCAC 59.435 61.111 14.21 0.00 34.99 3.51
551 552 3.051479 CGCATGCACCACAGCTCA 61.051 61.111 19.57 0.00 34.99 4.26
552 553 4.471726 GCGCATGCACCACAGCTC 62.472 66.667 19.57 0.00 42.15 4.09
562 563 1.202394 TGTATGGGAAATTGCGCATGC 60.202 47.619 22.98 21.68 40.95 4.06
563 564 2.867287 TGTATGGGAAATTGCGCATG 57.133 45.000 22.98 0.00 40.95 4.06
564 565 3.883830 TTTGTATGGGAAATTGCGCAT 57.116 38.095 19.11 19.11 42.95 4.73
565 566 3.243873 TGTTTTGTATGGGAAATTGCGCA 60.244 39.130 5.66 5.66 35.10 6.09
566 567 3.321497 TGTTTTGTATGGGAAATTGCGC 58.679 40.909 0.00 0.00 0.00 6.09
567 568 4.143137 GCTTGTTTTGTATGGGAAATTGCG 60.143 41.667 0.00 0.00 0.00 4.85
568 569 4.754114 TGCTTGTTTTGTATGGGAAATTGC 59.246 37.500 0.00 0.00 0.00 3.56
569 570 5.409214 CCTGCTTGTTTTGTATGGGAAATTG 59.591 40.000 0.00 0.00 0.00 2.32
570 571 5.550290 CCTGCTTGTTTTGTATGGGAAATT 58.450 37.500 0.00 0.00 0.00 1.82
571 572 4.563374 GCCTGCTTGTTTTGTATGGGAAAT 60.563 41.667 0.00 0.00 0.00 2.17
572 573 3.244044 GCCTGCTTGTTTTGTATGGGAAA 60.244 43.478 0.00 0.00 0.00 3.13
573 574 2.298729 GCCTGCTTGTTTTGTATGGGAA 59.701 45.455 0.00 0.00 0.00 3.97
574 575 1.892474 GCCTGCTTGTTTTGTATGGGA 59.108 47.619 0.00 0.00 0.00 4.37
575 576 1.895131 AGCCTGCTTGTTTTGTATGGG 59.105 47.619 0.00 0.00 0.00 4.00
576 577 4.737054 CTTAGCCTGCTTGTTTTGTATGG 58.263 43.478 0.00 0.00 0.00 2.74
577 578 4.168760 GCTTAGCCTGCTTGTTTTGTATG 58.831 43.478 0.00 0.00 0.00 2.39
578 579 3.826157 TGCTTAGCCTGCTTGTTTTGTAT 59.174 39.130 0.29 0.00 0.00 2.29
584 585 0.538057 TGCTGCTTAGCCTGCTTGTT 60.538 50.000 17.11 0.00 0.00 2.83
670 671 4.974721 GGTGGTGTGGTGGGGCAG 62.975 72.222 0.00 0.00 0.00 4.85
685 686 4.430765 GATCGACACGCACGGGGT 62.431 66.667 0.00 0.00 0.00 4.95
716 717 1.537135 GGAGCTACACGAAGAGGATGC 60.537 57.143 0.00 0.00 0.00 3.91
718 719 1.751924 GTGGAGCTACACGAAGAGGAT 59.248 52.381 14.67 0.00 0.00 3.24
757 758 1.687563 GGAGGAGACTGGAGCTAGAC 58.312 60.000 0.00 0.00 44.43 2.59
758 759 0.553819 GGGAGGAGACTGGAGCTAGA 59.446 60.000 0.00 0.00 44.43 2.43
759 760 0.821711 CGGGAGGAGACTGGAGCTAG 60.822 65.000 0.00 0.00 44.43 3.42
760 761 1.227664 CGGGAGGAGACTGGAGCTA 59.772 63.158 0.00 0.00 44.43 3.32
761 762 2.043450 CGGGAGGAGACTGGAGCT 60.043 66.667 0.00 0.00 44.43 4.09
762 763 1.985116 AACGGGAGGAGACTGGAGC 60.985 63.158 0.00 0.00 44.43 4.70
763 764 1.893786 CAACGGGAGGAGACTGGAG 59.106 63.158 0.00 0.00 44.43 3.86
764 765 2.283529 GCAACGGGAGGAGACTGGA 61.284 63.158 0.00 0.00 44.43 3.86
765 766 2.266055 GCAACGGGAGGAGACTGG 59.734 66.667 0.00 0.00 44.43 4.00
766 767 2.266055 GGCAACGGGAGGAGACTG 59.734 66.667 0.00 0.00 44.43 3.51
767 768 3.003763 GGGCAACGGGAGGAGACT 61.004 66.667 0.00 0.00 41.34 3.24
768 769 3.003763 AGGGCAACGGGAGGAGAC 61.004 66.667 0.00 0.00 37.60 3.36
769 770 2.683933 GAGGGCAACGGGAGGAGA 60.684 66.667 0.00 0.00 37.60 3.71
770 771 2.685380 AGAGGGCAACGGGAGGAG 60.685 66.667 0.00 0.00 37.60 3.69
771 772 2.683933 GAGAGGGCAACGGGAGGA 60.684 66.667 0.00 0.00 37.60 3.71
772 773 2.685380 AGAGAGGGCAACGGGAGG 60.685 66.667 0.00 0.00 37.60 4.30
773 774 1.671901 GAGAGAGAGGGCAACGGGAG 61.672 65.000 0.00 0.00 37.60 4.30
774 775 1.682684 GAGAGAGAGGGCAACGGGA 60.683 63.158 0.00 0.00 37.60 5.14
775 776 1.684049 AGAGAGAGAGGGCAACGGG 60.684 63.158 0.00 0.00 37.60 5.28
776 777 0.967887 TCAGAGAGAGAGGGCAACGG 60.968 60.000 0.00 0.00 37.60 4.44
777 778 1.110442 ATCAGAGAGAGAGGGCAACG 58.890 55.000 0.00 0.00 37.60 4.10
778 779 1.138661 CCATCAGAGAGAGAGGGCAAC 59.861 57.143 0.00 0.00 29.44 4.17
779 780 1.493861 CCATCAGAGAGAGAGGGCAA 58.506 55.000 0.00 0.00 29.44 4.52
780 781 0.398239 CCCATCAGAGAGAGAGGGCA 60.398 60.000 0.00 0.00 38.31 5.36
781 782 2.439837 CCCATCAGAGAGAGAGGGC 58.560 63.158 0.00 0.00 38.31 5.19
782 783 0.105555 AGCCCATCAGAGAGAGAGGG 60.106 60.000 0.00 0.00 44.42 4.30
783 784 1.042229 CAGCCCATCAGAGAGAGAGG 58.958 60.000 0.00 0.00 0.00 3.69
784 785 2.070305 TCAGCCCATCAGAGAGAGAG 57.930 55.000 0.00 0.00 0.00 3.20
785 786 2.317973 CATCAGCCCATCAGAGAGAGA 58.682 52.381 0.00 0.00 0.00 3.10
786 787 1.345089 CCATCAGCCCATCAGAGAGAG 59.655 57.143 0.00 0.00 0.00 3.20
787 788 1.062658 TCCATCAGCCCATCAGAGAGA 60.063 52.381 0.00 0.00 0.00 3.10
788 789 1.345089 CTCCATCAGCCCATCAGAGAG 59.655 57.143 0.00 0.00 0.00 3.20
809 810 2.110011 GCTAGAGGAGGGAGAAGAGGAT 59.890 54.545 0.00 0.00 0.00 3.24
834 835 4.475135 GCAGGGGAGGCCGAGAAC 62.475 72.222 0.00 0.00 0.00 3.01
840 841 3.927481 GACTGTTGCAGGGGAGGCC 62.927 68.421 0.00 0.00 35.51 5.19
853 854 3.314331 CCGCTGGACCTGGACTGT 61.314 66.667 0.00 0.00 0.00 3.55
856 857 2.997897 ACTCCGCTGGACCTGGAC 60.998 66.667 0.00 0.00 0.00 4.02
857 858 2.680352 GACTCCGCTGGACCTGGA 60.680 66.667 0.00 0.86 0.00 3.86
858 859 3.775654 GGACTCCGCTGGACCTGG 61.776 72.222 0.01 0.00 0.00 4.45
859 860 2.681778 AGGACTCCGCTGGACCTG 60.682 66.667 6.13 0.00 28.63 4.00
860 861 2.363147 GAGGACTCCGCTGGACCT 60.363 66.667 6.50 6.50 31.87 3.85
861 862 3.827898 CGAGGACTCCGCTGGACC 61.828 72.222 0.00 0.00 0.00 4.46
862 863 2.750637 TCGAGGACTCCGCTGGAC 60.751 66.667 0.00 0.00 0.00 4.02
885 886 2.125106 GGAGGTGGCGCGAATCTT 60.125 61.111 12.10 0.00 0.00 2.40
928 929 1.826054 CGAGGGAGCAGAGGACGAT 60.826 63.158 0.00 0.00 0.00 3.73
931 932 3.844090 GGCGAGGGAGCAGAGGAC 61.844 72.222 0.00 0.00 39.27 3.85
1114 1118 0.801067 GCGTTGGCGTAGGAGTACAG 60.801 60.000 0.00 0.00 40.81 2.74
1128 1132 3.911155 GAAGCCGTTGAGCGCGTTG 62.911 63.158 8.43 0.00 39.71 4.10
1194 1198 3.443045 TACGCCGAGACGAACCCC 61.443 66.667 0.00 0.00 36.70 4.95
1239 1243 3.207547 CTGGGAGTGCGTCGTGTCA 62.208 63.158 0.00 0.00 0.00 3.58
1305 1309 0.469892 TGATGATGCCCTCGCCTAGA 60.470 55.000 0.00 0.00 0.00 2.43
1308 1312 1.374190 GATGATGATGCCCTCGCCT 59.626 57.895 0.00 0.00 0.00 5.52
1318 1322 1.300156 CGACCACGCCGATGATGAT 60.300 57.895 0.00 0.00 0.00 2.45
1497 1501 0.250553 TGGTGTCGTTGGGGTTCATC 60.251 55.000 0.00 0.00 0.00 2.92
1599 1603 1.814527 CCCGTACCCGAAGAAGGAG 59.185 63.158 0.00 0.00 35.63 3.69
1662 1666 1.378762 GGGCCAGCTGACCTTGTAA 59.621 57.895 19.32 0.00 0.00 2.41
1764 1900 1.204312 GAGCGGCTCGTTGTTGAAC 59.796 57.895 15.09 0.00 0.00 3.18
1834 1970 3.461982 CGCTGACGCTGACACGAC 61.462 66.667 0.00 0.20 36.70 4.34
1893 2029 1.447643 CGTGAGGACCCATGGGATC 59.552 63.158 38.07 28.03 38.96 3.36
2076 2212 3.336468 CAGACTTTGAAGCAGAGCTGAT 58.664 45.455 0.85 0.00 39.62 2.90
2150 2286 1.266175 CGGCAATCTTCATCTGATGGC 59.734 52.381 17.06 10.99 39.48 4.40
2229 2365 1.065928 CAGCGGATACTCACCCGTC 59.934 63.158 0.00 0.00 46.84 4.79
2322 2458 2.094182 GGTCTGCTGGAAGTTGATCGTA 60.094 50.000 0.00 0.00 35.30 3.43
2331 2467 1.216710 GAGGACGGTCTGCTGGAAG 59.783 63.158 8.23 0.00 0.00 3.46
2497 2633 4.699522 GCCGACCAAAGCCGTCCT 62.700 66.667 0.00 0.00 0.00 3.85
3041 3207 4.717629 CGCCGAACTCCAGCGTCA 62.718 66.667 0.00 0.00 44.65 4.35
3177 3349 1.827354 TCACACCACCACGTACGGA 60.827 57.895 21.06 0.27 0.00 4.69
3231 3403 1.258982 CAAACTACATCATCGGAGCGC 59.741 52.381 0.00 0.00 0.00 5.92
3283 3455 4.065088 TGTGACTGAGAAATACAAGGCAC 58.935 43.478 0.50 0.50 0.00 5.01
3284 3456 4.202357 ACTGTGACTGAGAAATACAAGGCA 60.202 41.667 0.00 0.00 0.00 4.75
3285 3457 4.153117 CACTGTGACTGAGAAATACAAGGC 59.847 45.833 0.32 0.00 0.00 4.35
3286 3458 4.692625 CCACTGTGACTGAGAAATACAAGG 59.307 45.833 9.86 0.00 0.00 3.61
3289 3461 4.588951 AGTCCACTGTGACTGAGAAATACA 59.411 41.667 9.86 0.00 43.80 2.29
3290 3462 5.140747 AGTCCACTGTGACTGAGAAATAC 57.859 43.478 9.86 0.00 43.80 1.89
3416 3594 8.424133 AGAAAAATGAAGAGCACAAAAGGTAAT 58.576 29.630 0.00 0.00 0.00 1.89
3420 3598 7.543947 AAAGAAAAATGAAGAGCACAAAAGG 57.456 32.000 0.00 0.00 0.00 3.11
3437 3615 9.161629 GTTCAATGGAAAAGGAAGAAAAGAAAA 57.838 29.630 0.00 0.00 34.13 2.29
3438 3616 7.491048 CGTTCAATGGAAAAGGAAGAAAAGAAA 59.509 33.333 0.00 0.00 34.13 2.52
3441 3619 5.691754 CCGTTCAATGGAAAAGGAAGAAAAG 59.308 40.000 0.00 0.00 35.99 2.27
3442 3620 5.452636 CCCGTTCAATGGAAAAGGAAGAAAA 60.453 40.000 0.00 0.00 35.99 2.29
3443 3621 4.038642 CCCGTTCAATGGAAAAGGAAGAAA 59.961 41.667 0.00 0.00 35.99 2.52
3449 3627 2.625790 TCAACCCGTTCAATGGAAAAGG 59.374 45.455 0.00 0.00 34.13 3.11
3464 3642 3.112709 GTCGCGCAGACTCAACCC 61.113 66.667 20.14 0.00 46.13 4.11
3474 3652 2.603247 GGTCAACACATGTCGCGCA 61.603 57.895 8.75 2.86 0.00 6.09
3498 3676 1.004277 GGGCTCACCAAGTGACCATAA 59.996 52.381 14.21 0.00 37.67 1.90
3505 3684 1.078143 GCTAGGGGCTCACCAAGTG 60.078 63.158 0.00 0.00 42.91 3.16
3507 3686 0.691078 TAGGCTAGGGGCTCACCAAG 60.691 60.000 0.00 0.00 45.63 3.61
3523 3702 2.035632 CTTACACCCAGCTCCTCTAGG 58.964 57.143 0.00 0.00 0.00 3.02
3524 3703 1.410882 GCTTACACCCAGCTCCTCTAG 59.589 57.143 0.00 0.00 34.15 2.43
3525 3704 1.486211 GCTTACACCCAGCTCCTCTA 58.514 55.000 0.00 0.00 34.15 2.43
3526 3705 1.268283 GGCTTACACCCAGCTCCTCT 61.268 60.000 0.00 0.00 37.43 3.69
3527 3706 1.222113 GGCTTACACCCAGCTCCTC 59.778 63.158 0.00 0.00 37.43 3.71
3528 3707 1.133809 TTGGCTTACACCCAGCTCCT 61.134 55.000 0.00 0.00 37.43 3.69
3529 3708 0.251165 TTTGGCTTACACCCAGCTCC 60.251 55.000 0.00 0.00 37.43 4.70
3531 3710 0.478507 AGTTTGGCTTACACCCAGCT 59.521 50.000 0.00 0.00 37.43 4.24
3533 3712 2.270352 TCAGTTTGGCTTACACCCAG 57.730 50.000 0.00 0.00 33.13 4.45
3534 3713 2.738587 TTCAGTTTGGCTTACACCCA 57.261 45.000 0.00 0.00 0.00 4.51
3535 3714 2.492088 GGATTCAGTTTGGCTTACACCC 59.508 50.000 0.00 0.00 0.00 4.61
3536 3715 3.421844 AGGATTCAGTTTGGCTTACACC 58.578 45.455 0.00 0.00 0.00 4.16
3542 3738 2.615493 CGGTGTAGGATTCAGTTTGGCT 60.615 50.000 0.00 0.00 0.00 4.75
3579 3775 4.463879 CCGTCAGCCCTGCCTCTG 62.464 72.222 0.00 0.00 0.00 3.35
3580 3776 4.704103 TCCGTCAGCCCTGCCTCT 62.704 66.667 0.00 0.00 0.00 3.69
3581 3777 3.672295 CTTCCGTCAGCCCTGCCTC 62.672 68.421 0.00 0.00 0.00 4.70
3582 3778 3.710722 CTTCCGTCAGCCCTGCCT 61.711 66.667 0.00 0.00 0.00 4.75
3583 3779 3.553095 AACTTCCGTCAGCCCTGCC 62.553 63.158 0.00 0.00 0.00 4.85
3584 3780 0.321298 TAAACTTCCGTCAGCCCTGC 60.321 55.000 0.00 0.00 0.00 4.85
3602 3798 5.699001 TCTTGCTACAATGCTCGAAAACTTA 59.301 36.000 0.00 0.00 0.00 2.24
3620 3816 3.026630 TCAAGTTCGATCGTTCTTGCT 57.973 42.857 30.16 15.15 37.68 3.91
3698 3896 2.290641 GTCATGTCAACACTTCACCCAC 59.709 50.000 0.00 0.00 0.00 4.61
3704 3902 5.422666 TTCACATGTCATGTCAACACTTC 57.577 39.130 15.73 0.00 42.70 3.01
3802 4009 1.418342 CCGGTTGCCGTCATCTAACG 61.418 60.000 6.82 0.00 46.80 3.18
3819 4026 0.859232 GATGTACTATGCGTTGCCCG 59.141 55.000 0.00 0.00 40.40 6.13
3820 4027 0.859232 CGATGTACTATGCGTTGCCC 59.141 55.000 0.00 0.00 0.00 5.36
3821 4028 1.567504 ACGATGTACTATGCGTTGCC 58.432 50.000 0.00 0.00 32.42 4.52
3822 4029 3.369385 AGTACGATGTACTATGCGTTGC 58.631 45.455 7.80 0.00 38.09 4.17
3823 4030 4.436847 GTGAGTACGATGTACTATGCGTTG 59.563 45.833 9.44 0.00 38.09 4.10
3824 4031 4.095334 TGTGAGTACGATGTACTATGCGTT 59.905 41.667 9.44 0.00 38.09 4.84
3825 4032 3.624410 TGTGAGTACGATGTACTATGCGT 59.376 43.478 9.44 0.00 40.42 5.24
3826 4033 4.205323 TGTGAGTACGATGTACTATGCG 57.795 45.455 9.44 0.00 0.00 4.73
3833 4040 3.926821 TGTTGCTGTGAGTACGATGTA 57.073 42.857 0.00 0.00 0.00 2.29
3836 4043 3.990092 TCTTTGTTGCTGTGAGTACGAT 58.010 40.909 0.00 0.00 0.00 3.73
3863 4070 1.221021 GGCCTCCTAACCTGGTTCG 59.779 63.158 16.75 9.90 0.00 3.95
3872 4079 2.442413 CAATTTTCGTGGGCCTCCTAA 58.558 47.619 4.53 0.00 0.00 2.69
3886 4093 2.481795 GCATATCCACTGCCGCAATTTT 60.482 45.455 0.00 0.00 33.44 1.82
3903 4110 5.245584 TGCCTCAAATCAGGATATGCATA 57.754 39.130 9.27 9.27 35.20 3.14
3948 4156 6.064060 CCTTATCTTTCCAGGCACATAATCA 58.936 40.000 0.00 0.00 0.00 2.57
4009 4217 9.480861 CCTCAATACCTCAGATAGTATTATGGA 57.519 37.037 12.74 5.67 37.12 3.41
4010 4218 8.200792 GCCTCAATACCTCAGATAGTATTATGG 58.799 40.741 5.92 10.23 37.12 2.74
4012 4220 7.416890 GCGCCTCAATACCTCAGATAGTATTAT 60.417 40.741 0.00 0.00 37.12 1.28
4013 4221 6.127703 GCGCCTCAATACCTCAGATAGTATTA 60.128 42.308 0.00 0.00 37.12 0.98
4014 4222 5.336849 GCGCCTCAATACCTCAGATAGTATT 60.337 44.000 0.00 1.69 39.23 1.89
4018 4226 2.297315 TGCGCCTCAATACCTCAGATAG 59.703 50.000 4.18 0.00 0.00 2.08
4080 4292 1.470996 AATTTTGCTGCTGGGGCGAA 61.471 50.000 0.00 0.00 42.25 4.70
4092 4304 3.732212 AGCAGGTGAAGGAAAATTTTGC 58.268 40.909 14.01 14.01 0.00 3.68
4096 4308 5.565439 CGATTCAAGCAGGTGAAGGAAAATT 60.565 40.000 4.21 0.00 40.72 1.82
4098 4310 3.253188 CGATTCAAGCAGGTGAAGGAAAA 59.747 43.478 4.21 0.00 40.72 2.29
4103 4315 3.686241 TCAATCGATTCAAGCAGGTGAAG 59.314 43.478 7.92 0.00 40.72 3.02
4116 4328 2.234661 TGGCAGACAGTCTCAATCGATT 59.765 45.455 4.39 4.39 0.00 3.34
4160 4372 1.201429 GGAGGAGGAAGAACAGGGCA 61.201 60.000 0.00 0.00 0.00 5.36
4166 4378 1.945580 AGGTGAGGAGGAGGAAGAAC 58.054 55.000 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.