Multiple sequence alignment - TraesCS6B01G171100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G171100 chr6B 100.000 2572 0 0 1 2572 183352682 183355253 0.000000e+00 4750.0
1 TraesCS6B01G171100 chr6B 88.304 342 23 10 1103 1435 183359542 183359875 6.670000e-106 394.0
2 TraesCS6B01G171100 chr6B 85.430 151 11 10 1486 1626 183361192 183361341 2.060000e-31 147.0
3 TraesCS6B01G171100 chr6A 86.032 988 80 26 718 1665 117434434 117435403 0.000000e+00 1007.0
4 TraesCS6B01G171100 chr6A 82.759 522 57 15 630 1123 117531158 117531674 3.930000e-118 435.0
5 TraesCS6B01G171100 chr6A 89.496 238 18 5 1665 1896 117435770 117436006 6.960000e-76 294.0
6 TraesCS6B01G171100 chr6A 88.608 158 9 3 817 970 117431823 117431975 1.570000e-42 183.0
7 TraesCS6B01G171100 chr6A 88.889 72 7 1 893 963 117437672 117437743 1.270000e-13 87.9
8 TraesCS6B01G171100 chr6D 91.087 561 34 7 980 1533 98117427 98117978 0.000000e+00 745.0
9 TraesCS6B01G171100 chr6D 92.143 140 9 1 1537 1674 98118142 98118281 2.020000e-46 196.0
10 TraesCS6B01G171100 chr3D 84.491 619 91 5 1955 2571 496158802 496158187 7.870000e-170 606.0
11 TraesCS6B01G171100 chr3D 92.896 366 22 2 1 364 609960826 609961189 1.750000e-146 529.0
12 TraesCS6B01G171100 chr3D 88.714 381 29 10 1 371 17378961 17378585 1.090000e-123 453.0
13 TraesCS6B01G171100 chr3D 80.386 622 99 17 1955 2559 324584952 324585567 3.900000e-123 451.0
14 TraesCS6B01G171100 chr7B 84.144 637 72 13 1939 2572 230338897 230339507 7.930000e-165 590.0
15 TraesCS6B01G171100 chr5A 80.861 627 107 9 1955 2571 22221271 22221894 4.980000e-132 481.0
16 TraesCS6B01G171100 chr7A 80.371 647 103 19 1938 2571 222236768 222237403 1.080000e-128 470.0
17 TraesCS6B01G171100 chr7A 87.599 379 37 5 1 373 134712812 134712438 5.080000e-117 431.0
18 TraesCS6B01G171100 chr7A 78.802 651 111 20 1933 2571 520586088 520585453 1.840000e-111 412.0
19 TraesCS6B01G171100 chr7D 87.437 398 49 1 2175 2571 259316678 259316281 8.390000e-125 457.0
20 TraesCS6B01G171100 chr7D 80.932 236 36 6 1938 2172 259328524 259328297 7.310000e-41 178.0
21 TraesCS6B01G171100 chr1D 79.688 640 113 13 1938 2568 277084967 277085598 1.820000e-121 446.0
22 TraesCS6B01G171100 chr1D 100.000 29 0 0 1963 1991 467040294 467040322 1.000000e-03 54.7
23 TraesCS6B01G171100 chr4A 87.206 383 32 11 1 370 273660692 273660314 1.100000e-113 420.0
24 TraesCS6B01G171100 chr2A 78.660 642 119 15 1940 2571 526255047 526255680 6.620000e-111 411.0
25 TraesCS6B01G171100 chr3B 82.911 316 32 16 23 329 83904263 83904565 5.460000e-67 265.0
26 TraesCS6B01G171100 chr1A 88.205 195 17 4 1719 1907 568103113 568103307 7.160000e-56 228.0
27 TraesCS6B01G171100 chr1B 85.965 57 4 2 1939 1995 119712203 119712151 9.940000e-05 58.4
28 TraesCS6B01G171100 chr1B 84.746 59 2 5 1938 1994 589508148 589508201 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G171100 chr6B 183352682 183355253 2571 False 4750.000 4750 100.00000 1 2572 1 chr6B.!!$F1 2571
1 TraesCS6B01G171100 chr6B 183359542 183361341 1799 False 270.500 394 86.86700 1103 1626 2 chr6B.!!$F2 523
2 TraesCS6B01G171100 chr6A 117531158 117531674 516 False 435.000 435 82.75900 630 1123 1 chr6A.!!$F1 493
3 TraesCS6B01G171100 chr6A 117431823 117437743 5920 False 392.975 1007 88.25625 718 1896 4 chr6A.!!$F2 1178
4 TraesCS6B01G171100 chr6D 98117427 98118281 854 False 470.500 745 91.61500 980 1674 2 chr6D.!!$F1 694
5 TraesCS6B01G171100 chr3D 496158187 496158802 615 True 606.000 606 84.49100 1955 2571 1 chr3D.!!$R2 616
6 TraesCS6B01G171100 chr3D 324584952 324585567 615 False 451.000 451 80.38600 1955 2559 1 chr3D.!!$F1 604
7 TraesCS6B01G171100 chr7B 230338897 230339507 610 False 590.000 590 84.14400 1939 2572 1 chr7B.!!$F1 633
8 TraesCS6B01G171100 chr5A 22221271 22221894 623 False 481.000 481 80.86100 1955 2571 1 chr5A.!!$F1 616
9 TraesCS6B01G171100 chr7A 222236768 222237403 635 False 470.000 470 80.37100 1938 2571 1 chr7A.!!$F1 633
10 TraesCS6B01G171100 chr7A 520585453 520586088 635 True 412.000 412 78.80200 1933 2571 1 chr7A.!!$R2 638
11 TraesCS6B01G171100 chr1D 277084967 277085598 631 False 446.000 446 79.68800 1938 2568 1 chr1D.!!$F1 630
12 TraesCS6B01G171100 chr2A 526255047 526255680 633 False 411.000 411 78.66000 1940 2571 1 chr2A.!!$F1 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
213 214 0.172352 GGGTGCGTGAGAGAGAGAAG 59.828 60.0 0.0 0.0 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1743 5513 0.263468 TGGTGAGATATCGGGGGTGA 59.737 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.028905 CGAGGTTGCAGGTTTTTCCA 58.971 50.000 0.00 0.00 39.02 3.53
22 23 1.001378 CGAGGTTGCAGGTTTTTCCAG 60.001 52.381 0.00 0.00 39.02 3.86
23 24 2.031870 GAGGTTGCAGGTTTTTCCAGT 58.968 47.619 0.00 0.00 39.02 4.00
24 25 3.219281 GAGGTTGCAGGTTTTTCCAGTA 58.781 45.455 0.00 0.00 39.02 2.74
25 26 3.634910 GAGGTTGCAGGTTTTTCCAGTAA 59.365 43.478 0.00 0.00 39.02 2.24
26 27 3.636764 AGGTTGCAGGTTTTTCCAGTAAG 59.363 43.478 0.00 0.00 39.02 2.34
27 28 3.243737 GGTTGCAGGTTTTTCCAGTAAGG 60.244 47.826 0.00 0.00 39.02 2.69
28 29 1.960689 TGCAGGTTTTTCCAGTAAGGC 59.039 47.619 0.00 0.00 39.02 4.35
31 32 3.486383 CAGGTTTTTCCAGTAAGGCTCA 58.514 45.455 0.00 0.00 39.02 4.26
33 34 4.524328 CAGGTTTTTCCAGTAAGGCTCATT 59.476 41.667 0.00 0.00 39.02 2.57
35 36 4.522789 GGTTTTTCCAGTAAGGCTCATTCA 59.477 41.667 0.00 0.00 37.29 2.57
36 37 5.461526 GTTTTTCCAGTAAGGCTCATTCAC 58.538 41.667 0.00 0.00 37.29 3.18
37 38 4.365514 TTTCCAGTAAGGCTCATTCACA 57.634 40.909 0.00 0.00 37.29 3.58
38 39 4.574674 TTCCAGTAAGGCTCATTCACAT 57.425 40.909 0.00 0.00 37.29 3.21
39 40 4.142609 TCCAGTAAGGCTCATTCACATC 57.857 45.455 0.00 0.00 37.29 3.06
40 41 2.868583 CCAGTAAGGCTCATTCACATCG 59.131 50.000 0.00 0.00 0.00 3.84
41 42 2.286294 CAGTAAGGCTCATTCACATCGC 59.714 50.000 0.00 0.00 0.00 4.58
43 44 0.749454 AAGGCTCATTCACATCGCCC 60.749 55.000 0.00 0.00 41.60 6.13
44 45 2.537560 GGCTCATTCACATCGCCCG 61.538 63.158 0.00 0.00 34.75 6.13
45 46 1.815421 GCTCATTCACATCGCCCGT 60.815 57.895 0.00 0.00 0.00 5.28
46 47 1.766143 GCTCATTCACATCGCCCGTC 61.766 60.000 0.00 0.00 0.00 4.79
48 49 0.460109 TCATTCACATCGCCCGTCAG 60.460 55.000 0.00 0.00 0.00 3.51
49 50 1.815421 ATTCACATCGCCCGTCAGC 60.815 57.895 0.00 0.00 0.00 4.26
50 51 2.244117 ATTCACATCGCCCGTCAGCT 62.244 55.000 0.00 0.00 0.00 4.24
51 52 2.835701 TTCACATCGCCCGTCAGCTC 62.836 60.000 0.00 0.00 0.00 4.09
52 53 4.148825 ACATCGCCCGTCAGCTCC 62.149 66.667 0.00 0.00 0.00 4.70
53 54 4.147449 CATCGCCCGTCAGCTCCA 62.147 66.667 0.00 0.00 0.00 3.86
58 59 4.742201 CCCGTCAGCTCCACCACG 62.742 72.222 0.00 0.00 0.00 4.94
60 61 2.029073 CGTCAGCTCCACCACGTT 59.971 61.111 0.00 0.00 0.00 3.99
61 62 2.310233 CGTCAGCTCCACCACGTTG 61.310 63.158 0.00 0.00 0.00 4.10
62 63 1.069090 GTCAGCTCCACCACGTTGA 59.931 57.895 0.00 0.00 0.00 3.18
63 64 0.946221 GTCAGCTCCACCACGTTGAG 60.946 60.000 0.00 0.00 0.00 3.02
65 66 0.946221 CAGCTCCACCACGTTGAGAC 60.946 60.000 0.00 0.00 28.31 3.36
66 67 1.069090 GCTCCACCACGTTGAGACA 59.931 57.895 0.00 0.00 28.31 3.41
67 68 0.531974 GCTCCACCACGTTGAGACAA 60.532 55.000 0.00 0.00 28.31 3.18
70 71 0.179056 CCACCACGTTGAGACAAGGT 60.179 55.000 0.00 0.00 34.10 3.50
71 72 1.663695 CACCACGTTGAGACAAGGTT 58.336 50.000 7.02 0.00 32.18 3.50
73 74 1.208535 ACCACGTTGAGACAAGGTTGA 59.791 47.619 12.68 0.00 30.85 3.18
75 76 2.480419 CCACGTTGAGACAAGGTTGATC 59.520 50.000 7.02 0.00 0.00 2.92
76 77 2.155732 CACGTTGAGACAAGGTTGATCG 59.844 50.000 7.02 0.00 0.00 3.69
78 79 2.609491 CGTTGAGACAAGGTTGATCGGA 60.609 50.000 0.00 0.00 0.00 4.55
79 80 2.996621 GTTGAGACAAGGTTGATCGGAG 59.003 50.000 0.00 0.00 0.00 4.63
80 81 1.550524 TGAGACAAGGTTGATCGGAGG 59.449 52.381 0.00 0.00 0.00 4.30
81 82 1.825474 GAGACAAGGTTGATCGGAGGA 59.175 52.381 0.00 0.00 0.00 3.71
82 83 1.827969 AGACAAGGTTGATCGGAGGAG 59.172 52.381 0.00 0.00 0.00 3.69
83 84 0.905357 ACAAGGTTGATCGGAGGAGG 59.095 55.000 0.00 0.00 0.00 4.30
84 85 0.179000 CAAGGTTGATCGGAGGAGGG 59.821 60.000 0.00 0.00 0.00 4.30
86 87 0.688087 AGGTTGATCGGAGGAGGGTC 60.688 60.000 0.00 0.00 0.00 4.46
89 90 2.519780 GATCGGAGGAGGGTCGCT 60.520 66.667 0.00 0.00 0.00 4.93
90 91 2.835431 ATCGGAGGAGGGTCGCTG 60.835 66.667 0.00 0.00 0.00 5.18
91 92 3.360423 ATCGGAGGAGGGTCGCTGA 62.360 63.158 0.00 0.00 0.00 4.26
93 94 2.818132 GGAGGAGGGTCGCTGATG 59.182 66.667 0.00 0.00 0.00 3.07
94 95 2.801631 GGAGGAGGGTCGCTGATGG 61.802 68.421 0.00 0.00 0.00 3.51
96 97 1.743321 GAGGAGGGTCGCTGATGGAG 61.743 65.000 0.00 0.00 0.00 3.86
97 98 2.801631 GGAGGGTCGCTGATGGAGG 61.802 68.421 0.00 0.00 0.00 4.30
99 100 4.554036 GGGTCGCTGATGGAGGCC 62.554 72.222 0.00 0.00 38.82 5.19
100 101 4.554036 GGTCGCTGATGGAGGCCC 62.554 72.222 0.00 0.00 33.26 5.80
102 103 3.785859 TCGCTGATGGAGGCCCAC 61.786 66.667 0.00 0.00 46.98 4.61
104 105 4.864334 GCTGATGGAGGCCCACGG 62.864 72.222 0.00 0.00 46.98 4.94
105 106 4.864334 CTGATGGAGGCCCACGGC 62.864 72.222 0.00 0.00 46.98 5.68
133 134 2.101770 GGTAAGAGACCGCCGACG 59.898 66.667 0.00 0.00 38.87 5.12
135 136 1.062206 GTAAGAGACCGCCGACGAG 59.938 63.158 0.00 0.00 43.93 4.18
136 137 2.110967 TAAGAGACCGCCGACGAGG 61.111 63.158 0.00 1.62 43.93 4.63
138 139 3.878519 GAGACCGCCGACGAGGAG 61.879 72.222 14.70 2.51 45.00 3.69
139 140 4.405671 AGACCGCCGACGAGGAGA 62.406 66.667 14.70 0.00 43.02 3.71
140 141 3.437795 GACCGCCGACGAGGAGAA 61.438 66.667 14.70 0.00 43.02 2.87
141 142 3.680338 GACCGCCGACGAGGAGAAC 62.680 68.421 14.70 2.21 43.02 3.01
142 143 4.831307 CCGCCGACGAGGAGAACG 62.831 72.222 0.00 0.00 43.02 3.95
145 146 4.493747 CCGACGAGGAGAACGCCC 62.494 72.222 0.00 0.00 45.00 6.13
146 147 4.831307 CGACGAGGAGAACGCCCG 62.831 72.222 0.00 0.00 0.00 6.13
147 148 3.437795 GACGAGGAGAACGCCCGA 61.438 66.667 10.74 0.00 0.00 5.14
148 149 2.986306 GACGAGGAGAACGCCCGAA 61.986 63.158 10.74 0.00 0.00 4.30
149 150 2.260434 CGAGGAGAACGCCCGAAA 59.740 61.111 0.00 0.00 0.00 3.46
150 151 2.092882 CGAGGAGAACGCCCGAAAC 61.093 63.158 0.00 0.00 0.00 2.78
151 152 1.740664 GAGGAGAACGCCCGAAACC 60.741 63.158 0.00 0.00 0.00 3.27
153 154 1.376812 GGAGAACGCCCGAAACCAT 60.377 57.895 0.00 0.00 0.00 3.55
155 156 0.953960 GAGAACGCCCGAAACCATGT 60.954 55.000 0.00 0.00 0.00 3.21
157 158 1.918868 GAACGCCCGAAACCATGTCC 61.919 60.000 0.00 0.00 0.00 4.02
158 159 3.496131 CGCCCGAAACCATGTCCG 61.496 66.667 0.00 0.00 0.00 4.79
160 161 3.496131 CCCGAAACCATGTCCGCG 61.496 66.667 0.00 0.00 0.00 6.46
162 163 2.740826 CGAAACCATGTCCGCGGT 60.741 61.111 27.15 1.97 36.98 5.68
163 164 2.867472 GAAACCATGTCCGCGGTG 59.133 61.111 27.15 16.51 35.08 4.94
164 165 2.671619 AAACCATGTCCGCGGTGG 60.672 61.111 26.82 26.82 35.08 4.61
165 166 4.715523 AACCATGTCCGCGGTGGG 62.716 66.667 30.24 24.98 37.33 4.61
167 168 4.838152 CCATGTCCGCGGTGGGAG 62.838 72.222 27.15 12.38 36.58 4.30
168 169 3.770040 CATGTCCGCGGTGGGAGA 61.770 66.667 27.15 4.05 36.58 3.71
169 170 3.461773 ATGTCCGCGGTGGGAGAG 61.462 66.667 27.15 0.00 36.58 3.20
171 172 3.827898 GTCCGCGGTGGGAGAGAG 61.828 72.222 27.15 0.00 36.58 3.20
172 173 4.043100 TCCGCGGTGGGAGAGAGA 62.043 66.667 27.15 0.00 38.76 3.10
173 174 3.068691 CCGCGGTGGGAGAGAGAA 61.069 66.667 19.50 0.00 0.00 2.87
174 175 2.646175 CCGCGGTGGGAGAGAGAAA 61.646 63.158 19.50 0.00 0.00 2.52
175 176 1.292223 CGCGGTGGGAGAGAGAAAA 59.708 57.895 0.00 0.00 0.00 2.29
176 177 0.737715 CGCGGTGGGAGAGAGAAAAG 60.738 60.000 0.00 0.00 0.00 2.27
178 179 1.549170 GCGGTGGGAGAGAGAAAAGTA 59.451 52.381 0.00 0.00 0.00 2.24
180 181 2.561419 CGGTGGGAGAGAGAAAAGTACA 59.439 50.000 0.00 0.00 0.00 2.90
182 183 3.833070 GGTGGGAGAGAGAAAAGTACAGA 59.167 47.826 0.00 0.00 0.00 3.41
183 184 4.081917 GGTGGGAGAGAGAAAAGTACAGAG 60.082 50.000 0.00 0.00 0.00 3.35
184 185 4.767928 GTGGGAGAGAGAAAAGTACAGAGA 59.232 45.833 0.00 0.00 0.00 3.10
185 186 5.244178 GTGGGAGAGAGAAAAGTACAGAGAA 59.756 44.000 0.00 0.00 0.00 2.87
186 187 5.839063 TGGGAGAGAGAAAAGTACAGAGAAA 59.161 40.000 0.00 0.00 0.00 2.52
187 188 6.015010 TGGGAGAGAGAAAAGTACAGAGAAAG 60.015 42.308 0.00 0.00 0.00 2.62
188 189 6.209788 GGGAGAGAGAAAAGTACAGAGAAAGA 59.790 42.308 0.00 0.00 0.00 2.52
189 190 7.312899 GGAGAGAGAAAAGTACAGAGAAAGAG 58.687 42.308 0.00 0.00 0.00 2.85
190 191 7.175990 GGAGAGAGAAAAGTACAGAGAAAGAGA 59.824 40.741 0.00 0.00 0.00 3.10
191 192 8.650143 AGAGAGAAAAGTACAGAGAAAGAGAT 57.350 34.615 0.00 0.00 0.00 2.75
192 193 9.747898 AGAGAGAAAAGTACAGAGAAAGAGATA 57.252 33.333 0.00 0.00 0.00 1.98
196 197 8.482128 AGAAAAGTACAGAGAAAGAGATATGGG 58.518 37.037 0.00 0.00 0.00 4.00
198 199 6.723298 AGTACAGAGAAAGAGATATGGGTG 57.277 41.667 0.00 0.00 0.00 4.61
199 200 4.414337 ACAGAGAAAGAGATATGGGTGC 57.586 45.455 0.00 0.00 0.00 5.01
201 202 3.034635 AGAGAAAGAGATATGGGTGCGT 58.965 45.455 0.00 0.00 0.00 5.24
202 203 3.126831 GAGAAAGAGATATGGGTGCGTG 58.873 50.000 0.00 0.00 0.00 5.34
203 204 2.766263 AGAAAGAGATATGGGTGCGTGA 59.234 45.455 0.00 0.00 0.00 4.35
204 205 2.898729 AAGAGATATGGGTGCGTGAG 57.101 50.000 0.00 0.00 0.00 3.51
206 207 1.959985 AGAGATATGGGTGCGTGAGAG 59.040 52.381 0.00 0.00 0.00 3.20
208 209 1.959985 AGATATGGGTGCGTGAGAGAG 59.040 52.381 0.00 0.00 0.00 3.20
209 210 1.957177 GATATGGGTGCGTGAGAGAGA 59.043 52.381 0.00 0.00 0.00 3.10
212 213 0.539669 TGGGTGCGTGAGAGAGAGAA 60.540 55.000 0.00 0.00 0.00 2.87
213 214 0.172352 GGGTGCGTGAGAGAGAGAAG 59.828 60.000 0.00 0.00 0.00 2.85
216 217 2.165437 GGTGCGTGAGAGAGAGAAGAAT 59.835 50.000 0.00 0.00 0.00 2.40
217 218 3.178267 GTGCGTGAGAGAGAGAAGAATG 58.822 50.000 0.00 0.00 0.00 2.67
219 220 2.425312 GCGTGAGAGAGAGAAGAATGGA 59.575 50.000 0.00 0.00 0.00 3.41
220 221 3.489059 GCGTGAGAGAGAGAAGAATGGAG 60.489 52.174 0.00 0.00 0.00 3.86
221 222 3.944650 CGTGAGAGAGAGAAGAATGGAGA 59.055 47.826 0.00 0.00 0.00 3.71
222 223 4.397730 CGTGAGAGAGAGAAGAATGGAGAA 59.602 45.833 0.00 0.00 0.00 2.87
223 224 5.105957 CGTGAGAGAGAGAAGAATGGAGAAA 60.106 44.000 0.00 0.00 0.00 2.52
224 225 6.571344 CGTGAGAGAGAGAAGAATGGAGAAAA 60.571 42.308 0.00 0.00 0.00 2.29
225 226 7.158021 GTGAGAGAGAGAAGAATGGAGAAAAA 58.842 38.462 0.00 0.00 0.00 1.94
226 227 7.331687 GTGAGAGAGAGAAGAATGGAGAAAAAG 59.668 40.741 0.00 0.00 0.00 2.27
229 230 6.710278 AGAGAGAAGAATGGAGAAAAAGAGG 58.290 40.000 0.00 0.00 0.00 3.69
230 231 6.272090 AGAGAGAAGAATGGAGAAAAAGAGGT 59.728 38.462 0.00 0.00 0.00 3.85
231 232 6.237154 AGAGAAGAATGGAGAAAAAGAGGTG 58.763 40.000 0.00 0.00 0.00 4.00
233 234 5.073691 AGAAGAATGGAGAAAAAGAGGTGGA 59.926 40.000 0.00 0.00 0.00 4.02
234 235 4.657013 AGAATGGAGAAAAAGAGGTGGAC 58.343 43.478 0.00 0.00 0.00 4.02
236 237 1.157585 GGAGAAAAAGAGGTGGACGC 58.842 55.000 0.00 0.00 0.00 5.19
237 238 0.790814 GAGAAAAAGAGGTGGACGCG 59.209 55.000 3.53 3.53 0.00 6.01
238 239 1.206831 GAAAAAGAGGTGGACGCGC 59.793 57.895 5.73 0.00 0.00 6.86
239 240 2.494504 GAAAAAGAGGTGGACGCGCG 62.495 60.000 30.96 30.96 0.00 6.86
240 241 3.802418 AAAAGAGGTGGACGCGCGT 62.802 57.895 38.52 38.52 0.00 6.01
247 248 4.103103 TGGACGCGCGTGAGAGAG 62.103 66.667 42.90 6.65 36.67 3.20
248 249 3.800863 GGACGCGCGTGAGAGAGA 61.801 66.667 42.90 0.00 34.40 3.10
249 250 2.276994 GACGCGCGTGAGAGAGAG 60.277 66.667 42.90 4.85 34.40 3.20
250 251 2.741726 GACGCGCGTGAGAGAGAGA 61.742 63.158 42.90 0.00 34.40 3.10
251 252 2.022623 CGCGCGTGAGAGAGAGAG 59.977 66.667 24.19 0.00 31.43 3.20
253 254 2.109739 GCGCGTGAGAGAGAGAGGA 61.110 63.158 8.43 0.00 0.00 3.71
254 255 1.444119 GCGCGTGAGAGAGAGAGGAT 61.444 60.000 8.43 0.00 0.00 3.24
255 256 1.872388 CGCGTGAGAGAGAGAGGATA 58.128 55.000 0.00 0.00 0.00 2.59
257 258 2.547007 CGCGTGAGAGAGAGAGGATAGA 60.547 54.545 0.00 0.00 0.00 1.98
258 259 3.472652 GCGTGAGAGAGAGAGGATAGAA 58.527 50.000 0.00 0.00 0.00 2.10
259 260 3.498397 GCGTGAGAGAGAGAGGATAGAAG 59.502 52.174 0.00 0.00 0.00 2.85
260 261 4.742440 GCGTGAGAGAGAGAGGATAGAAGA 60.742 50.000 0.00 0.00 0.00 2.87
261 262 5.551233 CGTGAGAGAGAGAGGATAGAAGAT 58.449 45.833 0.00 0.00 0.00 2.40
262 263 6.697395 CGTGAGAGAGAGAGGATAGAAGATA 58.303 44.000 0.00 0.00 0.00 1.98
263 264 7.158697 CGTGAGAGAGAGAGGATAGAAGATAA 58.841 42.308 0.00 0.00 0.00 1.75
264 265 7.331934 CGTGAGAGAGAGAGGATAGAAGATAAG 59.668 44.444 0.00 0.00 0.00 1.73
265 266 7.607991 GTGAGAGAGAGAGGATAGAAGATAAGG 59.392 44.444 0.00 0.00 0.00 2.69
266 267 7.294720 TGAGAGAGAGAGGATAGAAGATAAGGT 59.705 40.741 0.00 0.00 0.00 3.50
268 269 6.552008 AGAGAGAGGATAGAAGATAAGGTGG 58.448 44.000 0.00 0.00 0.00 4.61
269 270 5.650283 AGAGAGGATAGAAGATAAGGTGGG 58.350 45.833 0.00 0.00 0.00 4.61
270 271 4.164204 AGAGGATAGAAGATAAGGTGGGC 58.836 47.826 0.00 0.00 0.00 5.36
271 272 3.252351 AGGATAGAAGATAAGGTGGGCC 58.748 50.000 0.00 0.00 0.00 5.80
272 273 2.306219 GGATAGAAGATAAGGTGGGCCC 59.694 54.545 17.59 17.59 34.57 5.80
273 274 1.815757 TAGAAGATAAGGTGGGCCCC 58.184 55.000 22.27 10.91 34.57 5.80
275 276 1.230482 AAGATAAGGTGGGCCCCCA 60.230 57.895 25.98 10.98 45.02 4.96
284 285 3.643554 GGGCCCCCACACTTACGT 61.644 66.667 12.23 0.00 35.81 3.57
285 286 2.359478 GGCCCCCACACTTACGTG 60.359 66.667 0.00 0.00 46.63 4.49
300 301 5.120208 CACTTACGTGTCAGACCTTAAATGG 59.880 44.000 0.00 0.00 36.39 3.16
301 302 2.423577 ACGTGTCAGACCTTAAATGGC 58.576 47.619 0.00 0.00 0.00 4.40
303 304 2.416547 CGTGTCAGACCTTAAATGGCTG 59.583 50.000 0.00 1.79 34.70 4.85
304 305 2.749621 GTGTCAGACCTTAAATGGCTGG 59.250 50.000 7.48 0.00 34.40 4.85
306 307 2.026262 GTCAGACCTTAAATGGCTGGGA 60.026 50.000 7.48 0.00 34.40 4.37
308 309 1.064389 AGACCTTAAATGGCTGGGAGC 60.064 52.381 0.00 0.00 41.46 4.70
309 310 0.394352 ACCTTAAATGGCTGGGAGCG 60.394 55.000 0.00 0.00 43.62 5.03
310 311 1.728490 CCTTAAATGGCTGGGAGCGC 61.728 60.000 0.00 0.00 43.62 5.92
312 313 1.312371 TTAAATGGCTGGGAGCGCAC 61.312 55.000 11.47 1.97 43.62 5.34
365 366 3.569250 GGTGTGCCGATTGTAAACATT 57.431 42.857 0.00 0.00 0.00 2.71
366 367 3.908213 GGTGTGCCGATTGTAAACATTT 58.092 40.909 0.00 0.00 0.00 2.32
367 368 3.917985 GGTGTGCCGATTGTAAACATTTC 59.082 43.478 0.00 0.00 0.00 2.17
368 369 3.917985 GTGTGCCGATTGTAAACATTTCC 59.082 43.478 0.00 0.00 0.00 3.13
369 370 3.057174 TGTGCCGATTGTAAACATTTCCC 60.057 43.478 0.00 0.00 0.00 3.97
371 372 3.829601 TGCCGATTGTAAACATTTCCCTT 59.170 39.130 0.00 0.00 0.00 3.95
372 373 4.282195 TGCCGATTGTAAACATTTCCCTTT 59.718 37.500 0.00 0.00 0.00 3.11
373 374 5.477291 TGCCGATTGTAAACATTTCCCTTTA 59.523 36.000 0.00 0.00 0.00 1.85
374 375 6.153680 TGCCGATTGTAAACATTTCCCTTTAT 59.846 34.615 0.00 0.00 0.00 1.40
375 376 7.039270 GCCGATTGTAAACATTTCCCTTTATT 58.961 34.615 0.00 0.00 0.00 1.40
378 379 9.801873 CGATTGTAAACATTTCCCTTTATTCAT 57.198 29.630 0.00 0.00 0.00 2.57
381 382 9.936759 TTGTAAACATTTCCCTTTATTCATTCC 57.063 29.630 0.00 0.00 0.00 3.01
382 383 8.536175 TGTAAACATTTCCCTTTATTCATTCCC 58.464 33.333 0.00 0.00 0.00 3.97
383 384 7.813087 AAACATTTCCCTTTATTCATTCCCT 57.187 32.000 0.00 0.00 0.00 4.20
385 386 5.129320 ACATTTCCCTTTATTCATTCCCTGC 59.871 40.000 0.00 0.00 0.00 4.85
387 388 2.858768 TCCCTTTATTCATTCCCTGCCT 59.141 45.455 0.00 0.00 0.00 4.75
388 389 3.117512 TCCCTTTATTCATTCCCTGCCTC 60.118 47.826 0.00 0.00 0.00 4.70
389 390 3.225940 CCTTTATTCATTCCCTGCCTCC 58.774 50.000 0.00 0.00 0.00 4.30
392 393 2.744352 ATTCATTCCCTGCCTCCTTC 57.256 50.000 0.00 0.00 0.00 3.46
394 395 1.153086 CATTCCCTGCCTCCTTCCG 60.153 63.158 0.00 0.00 0.00 4.30
395 396 1.616628 ATTCCCTGCCTCCTTCCGT 60.617 57.895 0.00 0.00 0.00 4.69
396 397 1.915078 ATTCCCTGCCTCCTTCCGTG 61.915 60.000 0.00 0.00 0.00 4.94
399 400 3.710722 CTGCCTCCTTCCGTGCCT 61.711 66.667 0.00 0.00 0.00 4.75
400 401 3.249189 TGCCTCCTTCCGTGCCTT 61.249 61.111 0.00 0.00 0.00 4.35
403 404 2.294078 CCTCCTTCCGTGCCTTCCT 61.294 63.158 0.00 0.00 0.00 3.36
407 408 1.679898 CTTCCGTGCCTTCCTTCCT 59.320 57.895 0.00 0.00 0.00 3.36
408 409 0.674895 CTTCCGTGCCTTCCTTCCTG 60.675 60.000 0.00 0.00 0.00 3.86
409 410 1.415672 TTCCGTGCCTTCCTTCCTGT 61.416 55.000 0.00 0.00 0.00 4.00
410 411 0.543410 TCCGTGCCTTCCTTCCTGTA 60.543 55.000 0.00 0.00 0.00 2.74
411 412 0.541863 CCGTGCCTTCCTTCCTGTAT 59.458 55.000 0.00 0.00 0.00 2.29
412 413 1.760613 CCGTGCCTTCCTTCCTGTATA 59.239 52.381 0.00 0.00 0.00 1.47
413 414 2.368875 CCGTGCCTTCCTTCCTGTATAT 59.631 50.000 0.00 0.00 0.00 0.86
414 415 3.393800 CGTGCCTTCCTTCCTGTATATG 58.606 50.000 0.00 0.00 0.00 1.78
415 416 3.181465 CGTGCCTTCCTTCCTGTATATGT 60.181 47.826 0.00 0.00 0.00 2.29
416 417 4.038763 CGTGCCTTCCTTCCTGTATATGTA 59.961 45.833 0.00 0.00 0.00 2.29
417 418 5.542779 GTGCCTTCCTTCCTGTATATGTAG 58.457 45.833 0.00 0.00 0.00 2.74
419 420 4.563786 GCCTTCCTTCCTGTATATGTAGCC 60.564 50.000 0.00 0.00 0.00 3.93
420 421 4.841246 CCTTCCTTCCTGTATATGTAGCCT 59.159 45.833 0.00 0.00 0.00 4.58
421 422 5.308237 CCTTCCTTCCTGTATATGTAGCCTT 59.692 44.000 0.00 0.00 0.00 4.35
422 423 5.808366 TCCTTCCTGTATATGTAGCCTTG 57.192 43.478 0.00 0.00 0.00 3.61
423 424 5.216622 TCCTTCCTGTATATGTAGCCTTGT 58.783 41.667 0.00 0.00 0.00 3.16
425 426 5.305644 CCTTCCTGTATATGTAGCCTTGTCT 59.694 44.000 0.00 0.00 0.00 3.41
427 428 4.833380 TCCTGTATATGTAGCCTTGTCTCC 59.167 45.833 0.00 0.00 0.00 3.71
428 429 4.835615 CCTGTATATGTAGCCTTGTCTCCT 59.164 45.833 0.00 0.00 0.00 3.69
429 430 5.305644 CCTGTATATGTAGCCTTGTCTCCTT 59.694 44.000 0.00 0.00 0.00 3.36
430 431 6.183361 CCTGTATATGTAGCCTTGTCTCCTTT 60.183 42.308 0.00 0.00 0.00 3.11
431 432 6.582636 TGTATATGTAGCCTTGTCTCCTTTG 58.417 40.000 0.00 0.00 0.00 2.77
432 433 5.957771 ATATGTAGCCTTGTCTCCTTTGA 57.042 39.130 0.00 0.00 0.00 2.69
438 439 3.117888 AGCCTTGTCTCCTTTGACTTTCA 60.118 43.478 0.00 0.00 37.79 2.69
439 440 3.823304 GCCTTGTCTCCTTTGACTTTCAT 59.177 43.478 0.00 0.00 37.79 2.57
440 441 4.320788 GCCTTGTCTCCTTTGACTTTCATG 60.321 45.833 0.00 0.00 37.79 3.07
441 442 4.823989 CCTTGTCTCCTTTGACTTTCATGT 59.176 41.667 0.00 0.00 37.79 3.21
442 443 5.278169 CCTTGTCTCCTTTGACTTTCATGTG 60.278 44.000 0.00 0.00 37.79 3.21
443 444 4.136796 TGTCTCCTTTGACTTTCATGTGG 58.863 43.478 0.00 0.00 37.79 4.17
444 445 3.503748 GTCTCCTTTGACTTTCATGTGGG 59.496 47.826 0.00 0.00 34.39 4.61
445 446 3.394274 TCTCCTTTGACTTTCATGTGGGA 59.606 43.478 0.00 0.00 0.00 4.37
446 447 3.486383 TCCTTTGACTTTCATGTGGGAC 58.514 45.455 0.00 0.00 0.00 4.46
448 449 3.221771 CTTTGACTTTCATGTGGGACCA 58.778 45.455 0.00 0.00 0.00 4.02
449 450 3.304911 TTGACTTTCATGTGGGACCAA 57.695 42.857 0.00 0.00 0.00 3.67
450 451 2.582052 TGACTTTCATGTGGGACCAAC 58.418 47.619 0.00 0.00 0.00 3.77
452 453 1.499007 ACTTTCATGTGGGACCAACCT 59.501 47.619 0.00 0.00 38.98 3.50
454 455 1.144691 TTCATGTGGGACCAACCTCA 58.855 50.000 0.00 0.00 38.27 3.86
455 456 1.144691 TCATGTGGGACCAACCTCAA 58.855 50.000 0.00 0.00 37.53 3.02
456 457 1.496857 TCATGTGGGACCAACCTCAAA 59.503 47.619 0.00 0.00 37.53 2.69
457 458 1.888512 CATGTGGGACCAACCTCAAAG 59.111 52.381 0.00 0.00 37.53 2.77
458 459 1.217916 TGTGGGACCAACCTCAAAGA 58.782 50.000 0.00 0.00 38.98 2.52
459 460 1.142870 TGTGGGACCAACCTCAAAGAG 59.857 52.381 0.00 0.00 38.98 2.85
460 461 1.420138 GTGGGACCAACCTCAAAGAGA 59.580 52.381 0.00 0.00 38.98 3.10
461 462 2.040412 GTGGGACCAACCTCAAAGAGAT 59.960 50.000 0.00 0.00 38.98 2.75
462 463 3.263425 GTGGGACCAACCTCAAAGAGATA 59.737 47.826 0.00 0.00 38.98 1.98
464 465 4.540099 TGGGACCAACCTCAAAGAGATATT 59.460 41.667 0.00 0.00 38.98 1.28
466 467 5.104318 GGGACCAACCTCAAAGAGATATTCT 60.104 44.000 0.00 0.00 38.98 2.40
468 469 6.987404 GGACCAACCTCAAAGAGATATTCTAC 59.013 42.308 0.00 0.00 33.69 2.59
469 470 6.890293 ACCAACCTCAAAGAGATATTCTACC 58.110 40.000 0.00 0.00 34.14 3.18
470 471 6.443849 ACCAACCTCAAAGAGATATTCTACCA 59.556 38.462 0.00 0.00 34.14 3.25
473 474 6.879400 ACCTCAAAGAGATATTCTACCACAC 58.121 40.000 0.00 0.00 34.14 3.82
474 475 6.440647 ACCTCAAAGAGATATTCTACCACACA 59.559 38.462 0.00 0.00 34.14 3.72
475 476 6.983307 CCTCAAAGAGATATTCTACCACACAG 59.017 42.308 0.00 0.00 34.14 3.66
476 477 6.341316 TCAAAGAGATATTCTACCACACAGC 58.659 40.000 0.00 0.00 34.14 4.40
479 480 4.959210 AGAGATATTCTACCACACAGCTGT 59.041 41.667 15.25 15.25 33.23 4.40
480 481 5.163468 AGAGATATTCTACCACACAGCTGTG 60.163 44.000 38.76 38.76 42.29 3.66
494 495 0.394565 GCTGTGGGCTAGTGGATAGG 59.605 60.000 0.00 0.00 38.06 2.57
499 500 3.060866 GCTAGTGGATAGGCCGGG 58.939 66.667 2.18 0.00 40.66 5.73
502 503 1.152118 TAGTGGATAGGCCGGGCAT 60.152 57.895 31.59 20.65 40.66 4.40
503 504 1.480212 TAGTGGATAGGCCGGGCATG 61.480 60.000 31.59 0.00 40.66 4.06
504 505 2.447572 TGGATAGGCCGGGCATGA 60.448 61.111 31.59 15.41 40.66 3.07
505 506 2.032681 GGATAGGCCGGGCATGAC 59.967 66.667 31.59 17.19 0.00 3.06
506 507 2.818169 GGATAGGCCGGGCATGACA 61.818 63.158 31.59 9.74 0.00 3.58
507 508 1.598130 GATAGGCCGGGCATGACAC 60.598 63.158 31.59 10.99 0.00 3.67
509 510 2.329539 ATAGGCCGGGCATGACACTG 62.330 60.000 31.59 0.00 0.00 3.66
511 512 4.408821 GCCGGGCATGACACTGGA 62.409 66.667 15.62 0.00 35.02 3.86
512 513 2.591753 CCGGGCATGACACTGGAT 59.408 61.111 0.00 0.00 35.02 3.41
514 515 1.378882 CCGGGCATGACACTGGATTG 61.379 60.000 0.00 0.00 35.02 2.67
516 517 1.669999 GGGCATGACACTGGATTGGC 61.670 60.000 0.00 0.00 0.00 4.52
517 518 1.430632 GCATGACACTGGATTGGCG 59.569 57.895 0.00 0.00 0.00 5.69
519 520 0.677731 CATGACACTGGATTGGCGGT 60.678 55.000 0.00 0.00 0.00 5.68
520 521 0.677731 ATGACACTGGATTGGCGGTG 60.678 55.000 0.00 0.00 35.99 4.94
535 536 3.478780 GTGGCCACCAGTCCAGTA 58.521 61.111 26.31 0.00 32.34 2.74
537 538 2.221299 TGGCCACCAGTCCAGTACC 61.221 63.158 0.00 0.00 0.00 3.34
538 539 2.221299 GGCCACCAGTCCAGTACCA 61.221 63.158 0.00 0.00 0.00 3.25
539 540 1.758592 GCCACCAGTCCAGTACCAA 59.241 57.895 0.00 0.00 0.00 3.67
540 541 0.328258 GCCACCAGTCCAGTACCAAT 59.672 55.000 0.00 0.00 0.00 3.16
541 542 1.950484 GCCACCAGTCCAGTACCAATG 60.950 57.143 0.00 0.00 0.00 2.82
542 543 1.351017 CCACCAGTCCAGTACCAATGT 59.649 52.381 0.00 0.00 0.00 2.71
543 544 2.224769 CCACCAGTCCAGTACCAATGTT 60.225 50.000 0.00 0.00 0.00 2.71
544 545 3.486383 CACCAGTCCAGTACCAATGTTT 58.514 45.455 0.00 0.00 0.00 2.83
546 547 3.081804 CCAGTCCAGTACCAATGTTTCC 58.918 50.000 0.00 0.00 0.00 3.13
547 548 3.497763 CCAGTCCAGTACCAATGTTTCCA 60.498 47.826 0.00 0.00 0.00 3.53
548 549 4.335416 CAGTCCAGTACCAATGTTTCCAT 58.665 43.478 0.00 0.00 0.00 3.41
549 550 4.156556 CAGTCCAGTACCAATGTTTCCATG 59.843 45.833 0.00 0.00 0.00 3.66
550 551 3.443681 GTCCAGTACCAATGTTTCCATGG 59.556 47.826 4.97 4.97 0.00 3.66
551 552 3.332187 TCCAGTACCAATGTTTCCATGGA 59.668 43.478 11.44 11.44 0.00 3.41
552 553 3.443681 CCAGTACCAATGTTTCCATGGAC 59.556 47.826 15.91 5.11 0.00 4.02
553 554 4.078537 CAGTACCAATGTTTCCATGGACA 58.921 43.478 15.91 11.71 0.00 4.02
554 555 4.079253 AGTACCAATGTTTCCATGGACAC 58.921 43.478 21.90 21.90 0.00 3.67
556 557 1.202114 CCAATGTTTCCATGGACACCG 59.798 52.381 24.83 14.60 0.00 4.94
557 558 2.158559 CAATGTTTCCATGGACACCGA 58.841 47.619 24.83 10.53 0.00 4.69
558 559 2.113860 ATGTTTCCATGGACACCGAG 57.886 50.000 24.83 0.00 0.00 4.63
559 560 0.762418 TGTTTCCATGGACACCGAGT 59.238 50.000 24.83 0.00 0.00 4.18
560 561 1.270625 TGTTTCCATGGACACCGAGTC 60.271 52.381 24.83 3.12 46.83 3.36
571 572 3.129502 CCGAGTCGACCGGCTACA 61.130 66.667 25.41 0.00 40.54 2.74
572 573 2.403987 CGAGTCGACCGGCTACAG 59.596 66.667 13.01 0.00 0.00 2.74
574 575 1.722677 GAGTCGACCGGCTACAGAG 59.277 63.158 13.01 0.00 0.00 3.35
576 577 3.138798 TCGACCGGCTACAGAGGC 61.139 66.667 0.00 0.00 44.80 4.70
578 579 2.711922 CGACCGGCTACAGAGGCTT 61.712 63.158 0.00 0.00 46.06 4.35
580 581 1.889530 GACCGGCTACAGAGGCTTGT 61.890 60.000 0.00 7.34 46.06 3.16
581 582 1.448540 CCGGCTACAGAGGCTTGTG 60.449 63.158 11.08 4.77 46.06 3.33
582 583 1.293498 CGGCTACAGAGGCTTGTGT 59.707 57.895 3.58 3.58 46.06 3.72
583 584 1.016130 CGGCTACAGAGGCTTGTGTG 61.016 60.000 9.02 0.53 46.06 3.82
584 585 1.301677 GGCTACAGAGGCTTGTGTGC 61.302 60.000 9.02 9.86 44.83 4.57
591 592 2.676471 GGCTTGTGTGCCCGGATT 60.676 61.111 0.73 0.00 46.82 3.01
592 593 2.568090 GCTTGTGTGCCCGGATTG 59.432 61.111 0.73 0.00 0.00 2.67
593 594 2.568090 CTTGTGTGCCCGGATTGC 59.432 61.111 0.73 0.00 0.00 3.56
594 595 2.988684 TTGTGTGCCCGGATTGCC 60.989 61.111 0.73 0.00 0.00 4.52
595 596 3.505790 TTGTGTGCCCGGATTGCCT 62.506 57.895 0.73 0.00 0.00 4.75
597 598 4.738998 TGTGCCCGGATTGCCTGG 62.739 66.667 0.73 0.00 41.23 4.45
604 605 3.797353 GGATTGCCTGGCGAGGGA 61.797 66.667 17.33 11.48 40.19 4.20
605 606 2.512896 GATTGCCTGGCGAGGGAT 59.487 61.111 17.33 3.98 39.91 3.85
606 607 1.895707 GATTGCCTGGCGAGGGATG 60.896 63.158 17.33 0.00 39.91 3.51
607 608 4.802051 TTGCCTGGCGAGGGATGC 62.802 66.667 17.33 2.22 39.91 3.91
610 611 4.864334 CCTGGCGAGGGATGCACC 62.864 72.222 6.92 0.00 35.40 5.01
620 621 2.201927 GGATGCACCCATTTGGACC 58.798 57.895 0.00 0.00 37.39 4.46
621 622 0.614415 GGATGCACCCATTTGGACCA 60.614 55.000 0.00 0.00 37.39 4.02
622 623 0.819582 GATGCACCCATTTGGACCAG 59.180 55.000 0.00 0.00 37.39 4.00
623 624 1.259840 ATGCACCCATTTGGACCAGC 61.260 55.000 0.00 0.00 37.39 4.85
625 626 1.984026 CACCCATTTGGACCAGCCC 60.984 63.158 0.00 0.00 37.39 5.19
626 627 2.755469 CCCATTTGGACCAGCCCG 60.755 66.667 0.00 0.00 37.39 6.13
628 629 2.361610 CATTTGGACCAGCCCGCT 60.362 61.111 0.00 0.00 34.97 5.52
635 636 3.537206 GACCAGCCCGCTGTCACTT 62.537 63.158 15.22 0.00 42.15 3.16
650 651 0.511221 CACTTACAAGTTCCGTGGCG 59.489 55.000 0.00 0.00 37.08 5.69
664 665 1.393539 CGTGGCGATGTTCGAAGATTT 59.606 47.619 9.41 0.00 43.74 2.17
667 668 4.606232 CGTGGCGATGTTCGAAGATTTATC 60.606 45.833 9.41 3.33 43.74 1.75
680 681 6.037172 TCGAAGATTTATCTTAAGTTGCTGCC 59.963 38.462 5.02 0.00 46.47 4.85
697 698 3.944871 CCAATAATGGCACGGCTTC 57.055 52.632 0.00 0.00 40.58 3.86
705 706 1.327303 TGGCACGGCTTCAAAGATTT 58.673 45.000 0.00 0.00 0.00 2.17
709 710 4.202161 TGGCACGGCTTCAAAGATTTAAAA 60.202 37.500 0.00 0.00 0.00 1.52
771 2666 4.744867 GCAGGCTCTGAACATGTACCATAT 60.745 45.833 0.00 0.00 32.44 1.78
774 2669 5.309020 AGGCTCTGAACATGTACCATATGAT 59.691 40.000 3.65 0.00 0.00 2.45
789 2686 9.956720 GTACCATATGATTCAAAATTCTTCCAG 57.043 33.333 3.65 0.00 0.00 3.86
792 2689 9.956720 CCATATGATTCAAAATTCTTCCAGTAC 57.043 33.333 3.65 0.00 0.00 2.73
811 2708 9.768215 TCCAGTACCATGTCATGATCTATATTA 57.232 33.333 14.67 0.00 0.00 0.98
839 2736 1.968540 GCTTGTGAGAGCGCCCTTT 60.969 57.895 2.29 0.00 32.23 3.11
854 2751 1.969923 CCCTTTCCATTTCTTGCCACA 59.030 47.619 0.00 0.00 0.00 4.17
856 2753 3.768757 CCCTTTCCATTTCTTGCCACATA 59.231 43.478 0.00 0.00 0.00 2.29
880 2779 1.620819 AGCTTAGATAGGGGCGACATG 59.379 52.381 0.00 0.00 0.00 3.21
890 2789 2.690778 GGCGACATGTTCAGTGGGC 61.691 63.158 0.00 0.00 33.63 5.36
891 2790 2.690778 GCGACATGTTCAGTGGGCC 61.691 63.158 0.00 0.00 0.00 5.80
892 2791 2.390599 CGACATGTTCAGTGGGCCG 61.391 63.158 0.00 0.00 0.00 6.13
893 2792 2.034066 ACATGTTCAGTGGGCCGG 59.966 61.111 0.00 0.00 0.00 6.13
956 2856 2.094545 GTCAACATGGGCTCAACAATCC 60.095 50.000 0.00 0.00 0.00 3.01
960 2860 0.706433 ATGGGCTCAACAATCCACCT 59.294 50.000 0.00 0.00 31.48 4.00
965 2865 2.893489 GGCTCAACAATCCACCTTTTCT 59.107 45.455 0.00 0.00 0.00 2.52
971 2871 6.500041 TCAACAATCCACCTTTTCTTTTACG 58.500 36.000 0.00 0.00 0.00 3.18
979 2879 7.419204 TCCACCTTTTCTTTTACGTTTGTATG 58.581 34.615 0.00 0.00 0.00 2.39
980 2880 6.143278 CCACCTTTTCTTTTACGTTTGTATGC 59.857 38.462 0.00 0.00 0.00 3.14
982 2882 8.071368 CACCTTTTCTTTTACGTTTGTATGCTA 58.929 33.333 0.00 0.00 0.00 3.49
983 2883 8.789762 ACCTTTTCTTTTACGTTTGTATGCTAT 58.210 29.630 0.00 0.00 0.00 2.97
984 2884 9.274065 CCTTTTCTTTTACGTTTGTATGCTATC 57.726 33.333 0.00 0.00 0.00 2.08
985 2885 9.274065 CTTTTCTTTTACGTTTGTATGCTATCC 57.726 33.333 0.00 0.00 0.00 2.59
996 2928 4.667573 TGTATGCTATCCTCCTAGTCCTG 58.332 47.826 0.00 0.00 0.00 3.86
1083 3015 3.181450 GGTAACTAGCTGGCAATGGAGAT 60.181 47.826 0.00 0.00 0.00 2.75
1136 3068 1.530283 CTGATCCTGGCCATGCTCA 59.470 57.895 5.51 10.41 0.00 4.26
1155 3087 3.562182 TCATCATCGCCTCCTGTAAGTA 58.438 45.455 0.00 0.00 0.00 2.24
1169 3101 6.703319 TCCTGTAAGTAAAAACCATCGATCA 58.297 36.000 0.00 0.00 0.00 2.92
1170 3102 7.162761 TCCTGTAAGTAAAAACCATCGATCAA 58.837 34.615 0.00 0.00 0.00 2.57
1171 3103 7.662258 TCCTGTAAGTAAAAACCATCGATCAAA 59.338 33.333 0.00 0.00 0.00 2.69
1172 3104 8.458843 CCTGTAAGTAAAAACCATCGATCAAAT 58.541 33.333 0.00 0.00 0.00 2.32
1173 3105 9.490663 CTGTAAGTAAAAACCATCGATCAAATC 57.509 33.333 0.00 0.00 0.00 2.17
1220 3153 5.059404 TCAGATTTTCTTGGGATTTTCGC 57.941 39.130 0.00 0.00 0.00 4.70
1256 3192 6.165577 TCATTTGAAGTTCTCGATCATGTGA 58.834 36.000 4.17 0.00 0.00 3.58
1342 3284 0.602905 AGTGCTACAAGACGGGCAAC 60.603 55.000 0.00 0.00 36.43 4.17
1420 3362 3.016997 CATGGGATGCTACTGCTGG 57.983 57.895 0.00 0.00 40.48 4.85
1465 3414 0.603707 GCTACCACAAGCAGCAGACA 60.604 55.000 0.00 0.00 42.30 3.41
1517 4753 0.179076 TCACGCATGACCTAGCCATG 60.179 55.000 15.11 15.11 43.06 3.66
1600 5000 7.724305 ACGAACGCCATCATTATATTTTACT 57.276 32.000 0.00 0.00 0.00 2.24
1728 5498 3.572255 AGAAAAGCACCGAAAATGGCTAA 59.428 39.130 0.00 0.00 35.11 3.09
1735 5505 2.290323 ACCGAAAATGGCTAAGAGCACT 60.290 45.455 0.21 0.00 44.75 4.40
1739 5509 1.089920 AATGGCTAAGAGCACTTGCG 58.910 50.000 6.66 0.00 44.75 4.85
1760 5530 0.318762 GCTCACCCCCGATATCTCAC 59.681 60.000 0.34 0.00 0.00 3.51
1766 5536 3.326588 CACCCCCGATATCTCACCATTAA 59.673 47.826 0.34 0.00 0.00 1.40
1771 5541 7.172342 CCCCCGATATCTCACCATTAAATAAA 58.828 38.462 0.34 0.00 0.00 1.40
1783 5553 8.773645 TCACCATTAAATAAACATAGCGATCTG 58.226 33.333 0.00 0.00 0.00 2.90
1887 5661 9.823647 TTCCATACTCTTAATGATCTTTGACTC 57.176 33.333 4.17 0.00 0.00 3.36
1888 5662 8.138074 TCCATACTCTTAATGATCTTTGACTCG 58.862 37.037 4.17 0.00 0.00 4.18
1899 5673 5.879777 TGATCTTTGACTCGGAATAAATGCA 59.120 36.000 0.00 0.00 0.00 3.96
1900 5674 6.543465 TGATCTTTGACTCGGAATAAATGCAT 59.457 34.615 0.00 0.00 0.00 3.96
1901 5675 6.363577 TCTTTGACTCGGAATAAATGCATC 57.636 37.500 0.00 0.00 0.00 3.91
1902 5676 6.115446 TCTTTGACTCGGAATAAATGCATCT 58.885 36.000 0.00 0.00 0.00 2.90
1903 5677 7.272244 TCTTTGACTCGGAATAAATGCATCTA 58.728 34.615 0.00 0.00 0.00 1.98
1904 5678 7.439356 TCTTTGACTCGGAATAAATGCATCTAG 59.561 37.037 0.00 0.00 0.00 2.43
1905 5679 6.405278 TGACTCGGAATAAATGCATCTAGA 57.595 37.500 0.00 0.00 0.00 2.43
1906 5680 6.997655 TGACTCGGAATAAATGCATCTAGAT 58.002 36.000 0.00 0.00 0.00 1.98
1907 5681 6.870439 TGACTCGGAATAAATGCATCTAGATG 59.130 38.462 25.64 25.64 41.60 2.90
1908 5682 6.763355 ACTCGGAATAAATGCATCTAGATGT 58.237 36.000 28.92 14.93 40.80 3.06
1909 5683 6.648310 ACTCGGAATAAATGCATCTAGATGTG 59.352 38.462 28.92 11.34 40.80 3.21
1911 5685 6.646653 TCGGAATAAATGCATCTAGATGTGTC 59.353 38.462 28.92 15.97 40.80 3.67
1914 5688 7.094890 GGAATAAATGCATCTAGATGTGTCTGG 60.095 40.741 28.92 7.04 40.80 3.86
1915 5689 2.609427 TGCATCTAGATGTGTCTGGC 57.391 50.000 28.92 16.12 40.80 4.85
1917 5691 2.159000 TGCATCTAGATGTGTCTGGCTG 60.159 50.000 28.92 6.46 40.80 4.85
1918 5692 2.806019 GCATCTAGATGTGTCTGGCTGG 60.806 54.545 28.92 4.53 40.80 4.85
1919 5693 2.532250 TCTAGATGTGTCTGGCTGGA 57.468 50.000 0.00 0.00 35.87 3.86
1920 5694 2.103373 TCTAGATGTGTCTGGCTGGAC 58.897 52.381 0.00 4.67 35.87 4.02
1926 5700 1.977854 TGTGTCTGGCTGGACTAACAT 59.022 47.619 11.15 0.00 37.16 2.71
1927 5701 2.028112 TGTGTCTGGCTGGACTAACATC 60.028 50.000 11.15 0.00 37.16 3.06
1928 5702 1.204704 TGTCTGGCTGGACTAACATCG 59.795 52.381 11.15 0.00 37.16 3.84
1929 5703 0.824109 TCTGGCTGGACTAACATCGG 59.176 55.000 0.00 0.00 0.00 4.18
1930 5704 0.811616 CTGGCTGGACTAACATCGGC 60.812 60.000 0.00 0.00 0.00 5.54
1931 5705 1.523938 GGCTGGACTAACATCGGCC 60.524 63.158 0.00 0.00 33.27 6.13
1932 5706 1.523938 GCTGGACTAACATCGGCCC 60.524 63.158 0.00 0.00 0.00 5.80
1935 6382 1.068741 CTGGACTAACATCGGCCCTAC 59.931 57.143 0.00 0.00 0.00 3.18
1965 6412 7.944729 TTTAGAGAAAATTAAGGCATCAGCT 57.055 32.000 0.00 0.00 41.70 4.24
2040 6510 6.103997 AGAGTAACAACGACACAAAAAGAGA 58.896 36.000 0.00 0.00 0.00 3.10
2042 6512 7.280205 AGAGTAACAACGACACAAAAAGAGAAT 59.720 33.333 0.00 0.00 0.00 2.40
2056 6526 9.358872 ACAAAAAGAGAATTTGAGAAACAAGAC 57.641 29.630 6.05 0.00 39.56 3.01
2199 6890 3.308323 GCTCGAATCTTGGAAGTCATCAC 59.692 47.826 0.00 0.00 0.00 3.06
2282 7106 7.925483 TGCAAGTTTTAAATAAGCAGTCAACAT 59.075 29.630 0.00 0.00 0.00 2.71
2326 7275 7.962964 TTCAATAGTGAACTTGTTCCTAGTG 57.037 36.000 20.25 20.25 38.88 2.74
2462 7411 2.846206 ACATGAAGCCAGGACCTGATAA 59.154 45.455 23.77 2.29 32.44 1.75
2465 7414 4.591321 TGAAGCCAGGACCTGATAAAAT 57.409 40.909 23.77 2.64 32.44 1.82
2545 7496 2.412870 CACAAAGCACACACCTATCGA 58.587 47.619 0.00 0.00 0.00 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.886542 GGAAAAACCTGCAACCTCGAT 59.113 47.619 0.00 0.00 35.41 3.59
3 4 2.031870 ACTGGAAAAACCTGCAACCTC 58.968 47.619 0.00 0.00 40.59 3.85
6 7 3.798889 GCCTTACTGGAAAAACCTGCAAC 60.799 47.826 0.00 0.00 40.59 4.17
10 11 3.486383 TGAGCCTTACTGGAAAAACCTG 58.514 45.455 0.00 0.00 42.26 4.00
11 12 3.876309 TGAGCCTTACTGGAAAAACCT 57.124 42.857 0.00 0.00 39.86 3.50
12 13 4.522789 TGAATGAGCCTTACTGGAAAAACC 59.477 41.667 0.00 0.00 38.35 3.27
14 15 5.136828 TGTGAATGAGCCTTACTGGAAAAA 58.863 37.500 0.00 0.00 38.35 1.94
15 16 4.724399 TGTGAATGAGCCTTACTGGAAAA 58.276 39.130 0.00 0.00 38.35 2.29
17 18 4.517285 GATGTGAATGAGCCTTACTGGAA 58.483 43.478 0.00 0.00 38.35 3.53
18 19 3.430790 CGATGTGAATGAGCCTTACTGGA 60.431 47.826 0.00 0.00 38.35 3.86
21 22 2.555199 GCGATGTGAATGAGCCTTACT 58.445 47.619 0.00 0.00 0.00 2.24
22 23 1.599542 GGCGATGTGAATGAGCCTTAC 59.400 52.381 0.00 0.00 44.06 2.34
23 24 1.475034 GGGCGATGTGAATGAGCCTTA 60.475 52.381 4.73 0.00 46.44 2.69
24 25 0.749454 GGGCGATGTGAATGAGCCTT 60.749 55.000 4.73 0.00 46.44 4.35
25 26 1.153086 GGGCGATGTGAATGAGCCT 60.153 57.895 4.73 0.00 46.44 4.58
26 27 2.537560 CGGGCGATGTGAATGAGCC 61.538 63.158 0.00 0.00 46.51 4.70
27 28 1.766143 GACGGGCGATGTGAATGAGC 61.766 60.000 0.00 0.00 0.00 4.26
28 29 0.460109 TGACGGGCGATGTGAATGAG 60.460 55.000 0.00 0.00 0.00 2.90
31 32 1.815421 GCTGACGGGCGATGTGAAT 60.815 57.895 0.00 0.00 0.00 2.57
33 34 3.356639 GAGCTGACGGGCGATGTGA 62.357 63.158 0.00 0.00 37.29 3.58
35 36 4.148825 GGAGCTGACGGGCGATGT 62.149 66.667 0.00 0.00 37.29 3.06
36 37 4.147449 TGGAGCTGACGGGCGATG 62.147 66.667 0.00 0.00 37.29 3.84
37 38 4.148825 GTGGAGCTGACGGGCGAT 62.149 66.667 0.00 0.00 37.29 4.58
41 42 4.742201 CGTGGTGGAGCTGACGGG 62.742 72.222 0.00 0.00 0.00 5.28
43 44 2.029073 AACGTGGTGGAGCTGACG 59.971 61.111 0.00 0.00 37.82 4.35
44 45 0.946221 CTCAACGTGGTGGAGCTGAC 60.946 60.000 0.00 0.00 26.01 3.51
45 46 1.112916 TCTCAACGTGGTGGAGCTGA 61.113 55.000 0.00 0.00 33.87 4.26
46 47 0.946221 GTCTCAACGTGGTGGAGCTG 60.946 60.000 0.00 0.00 33.87 4.24
48 49 0.531974 TTGTCTCAACGTGGTGGAGC 60.532 55.000 0.00 0.00 33.87 4.70
49 50 1.502231 CTTGTCTCAACGTGGTGGAG 58.498 55.000 0.00 0.00 35.08 3.86
50 51 0.105964 CCTTGTCTCAACGTGGTGGA 59.894 55.000 0.00 0.00 0.00 4.02
51 52 0.179056 ACCTTGTCTCAACGTGGTGG 60.179 55.000 0.00 0.00 33.92 4.61
52 53 1.330521 CAACCTTGTCTCAACGTGGTG 59.669 52.381 0.00 0.00 34.94 4.17
53 54 1.208535 TCAACCTTGTCTCAACGTGGT 59.791 47.619 0.00 0.00 35.83 4.16
55 56 2.155732 CGATCAACCTTGTCTCAACGTG 59.844 50.000 0.00 0.00 0.00 4.49
58 59 2.996621 CTCCGATCAACCTTGTCTCAAC 59.003 50.000 0.00 0.00 0.00 3.18
60 61 1.550524 CCTCCGATCAACCTTGTCTCA 59.449 52.381 0.00 0.00 0.00 3.27
61 62 1.825474 TCCTCCGATCAACCTTGTCTC 59.175 52.381 0.00 0.00 0.00 3.36
62 63 1.827969 CTCCTCCGATCAACCTTGTCT 59.172 52.381 0.00 0.00 0.00 3.41
63 64 1.134670 CCTCCTCCGATCAACCTTGTC 60.135 57.143 0.00 0.00 0.00 3.18
65 66 0.179000 CCCTCCTCCGATCAACCTTG 59.821 60.000 0.00 0.00 0.00 3.61
66 67 0.252742 ACCCTCCTCCGATCAACCTT 60.253 55.000 0.00 0.00 0.00 3.50
67 68 0.688087 GACCCTCCTCCGATCAACCT 60.688 60.000 0.00 0.00 0.00 3.50
70 71 2.423898 GCGACCCTCCTCCGATCAA 61.424 63.158 0.00 0.00 0.00 2.57
71 72 2.833582 GCGACCCTCCTCCGATCA 60.834 66.667 0.00 0.00 0.00 2.92
73 74 2.648613 ATCAGCGACCCTCCTCCGAT 62.649 60.000 0.00 0.00 0.00 4.18
75 76 2.835431 ATCAGCGACCCTCCTCCG 60.835 66.667 0.00 0.00 0.00 4.63
76 77 2.801631 CCATCAGCGACCCTCCTCC 61.802 68.421 0.00 0.00 0.00 4.30
78 79 1.760086 CTCCATCAGCGACCCTCCT 60.760 63.158 0.00 0.00 0.00 3.69
79 80 2.801631 CCTCCATCAGCGACCCTCC 61.802 68.421 0.00 0.00 0.00 4.30
80 81 2.818132 CCTCCATCAGCGACCCTC 59.182 66.667 0.00 0.00 0.00 4.30
81 82 3.474570 GCCTCCATCAGCGACCCT 61.475 66.667 0.00 0.00 0.00 4.34
82 83 4.554036 GGCCTCCATCAGCGACCC 62.554 72.222 0.00 0.00 0.00 4.46
83 84 4.554036 GGGCCTCCATCAGCGACC 62.554 72.222 0.84 0.00 0.00 4.79
84 85 3.785859 TGGGCCTCCATCAGCGAC 61.786 66.667 4.53 0.00 38.32 5.19
105 106 4.124351 TCTTACCGAGCGCCACCG 62.124 66.667 2.29 5.51 37.57 4.94
106 107 2.202756 CTCTTACCGAGCGCCACC 60.203 66.667 2.29 0.00 31.99 4.61
107 108 1.516603 GTCTCTTACCGAGCGCCAC 60.517 63.158 2.29 0.00 39.70 5.01
108 109 2.707849 GGTCTCTTACCGAGCGCCA 61.708 63.158 2.29 0.00 38.88 5.69
109 110 2.104530 GGTCTCTTACCGAGCGCC 59.895 66.667 2.29 0.00 38.88 6.53
116 117 2.101770 CGTCGGCGGTCTCTTACC 59.898 66.667 7.21 0.00 45.77 2.85
117 118 1.062206 CTCGTCGGCGGTCTCTTAC 59.938 63.158 10.62 0.00 38.89 2.34
118 119 2.110967 CCTCGTCGGCGGTCTCTTA 61.111 63.158 10.62 0.00 38.89 2.10
119 120 3.441290 CCTCGTCGGCGGTCTCTT 61.441 66.667 10.62 0.00 38.89 2.85
120 121 4.405671 TCCTCGTCGGCGGTCTCT 62.406 66.667 10.62 0.00 38.89 3.10
121 122 3.878519 CTCCTCGTCGGCGGTCTC 61.879 72.222 10.62 0.00 38.89 3.36
123 124 3.437795 TTCTCCTCGTCGGCGGTC 61.438 66.667 10.62 0.00 38.89 4.79
124 125 3.745803 GTTCTCCTCGTCGGCGGT 61.746 66.667 10.62 0.00 38.89 5.68
125 126 4.831307 CGTTCTCCTCGTCGGCGG 62.831 72.222 10.62 0.00 38.89 6.13
128 129 4.493747 GGGCGTTCTCCTCGTCGG 62.494 72.222 0.00 0.00 33.53 4.79
129 130 4.831307 CGGGCGTTCTCCTCGTCG 62.831 72.222 0.00 0.00 33.53 5.12
130 131 2.482296 TTTCGGGCGTTCTCCTCGTC 62.482 60.000 0.00 0.00 0.00 4.20
131 132 2.567497 TTTCGGGCGTTCTCCTCGT 61.567 57.895 0.00 0.00 0.00 4.18
133 134 1.740664 GGTTTCGGGCGTTCTCCTC 60.741 63.158 0.00 0.00 0.00 3.71
135 136 1.376812 ATGGTTTCGGGCGTTCTCC 60.377 57.895 0.00 0.00 0.00 3.71
136 137 0.953960 ACATGGTTTCGGGCGTTCTC 60.954 55.000 0.00 0.00 0.00 2.87
138 139 1.500396 GACATGGTTTCGGGCGTTC 59.500 57.895 0.00 0.00 0.00 3.95
139 140 1.969589 GGACATGGTTTCGGGCGTT 60.970 57.895 0.00 0.00 0.00 4.84
140 141 2.359478 GGACATGGTTTCGGGCGT 60.359 61.111 0.00 0.00 0.00 5.68
141 142 3.496131 CGGACATGGTTTCGGGCG 61.496 66.667 0.00 0.00 0.00 6.13
142 143 3.810896 GCGGACATGGTTTCGGGC 61.811 66.667 0.00 0.00 0.00 6.13
144 145 3.496131 CCGCGGACATGGTTTCGG 61.496 66.667 24.07 0.79 0.00 4.30
145 146 2.740826 ACCGCGGACATGGTTTCG 60.741 61.111 35.90 0.00 33.81 3.46
146 147 2.686816 CCACCGCGGACATGGTTTC 61.687 63.158 35.90 0.00 35.96 2.78
147 148 2.671619 CCACCGCGGACATGGTTT 60.672 61.111 35.90 2.60 35.96 3.27
148 149 4.715523 CCCACCGCGGACATGGTT 62.716 66.667 35.90 3.57 35.96 3.67
150 151 4.838152 CTCCCACCGCGGACATGG 62.838 72.222 35.90 28.39 36.56 3.66
151 152 3.723235 CTCTCCCACCGCGGACATG 62.723 68.421 35.90 20.38 36.56 3.21
153 154 4.671590 TCTCTCCCACCGCGGACA 62.672 66.667 35.90 11.12 36.56 4.02
155 156 3.578968 TTCTCTCTCCCACCGCGGA 62.579 63.158 35.90 8.44 36.56 5.54
157 158 0.737715 CTTTTCTCTCTCCCACCGCG 60.738 60.000 0.00 0.00 0.00 6.46
158 159 0.321996 ACTTTTCTCTCTCCCACCGC 59.678 55.000 0.00 0.00 0.00 5.68
160 161 3.833070 TCTGTACTTTTCTCTCTCCCACC 59.167 47.826 0.00 0.00 0.00 4.61
162 163 4.999310 TCTCTGTACTTTTCTCTCTCCCA 58.001 43.478 0.00 0.00 0.00 4.37
163 164 5.986501 TTCTCTGTACTTTTCTCTCTCCC 57.013 43.478 0.00 0.00 0.00 4.30
164 165 7.175990 TCTCTTTCTCTGTACTTTTCTCTCTCC 59.824 40.741 0.00 0.00 0.00 3.71
165 166 8.106247 TCTCTTTCTCTGTACTTTTCTCTCTC 57.894 38.462 0.00 0.00 0.00 3.20
166 167 8.650143 ATCTCTTTCTCTGTACTTTTCTCTCT 57.350 34.615 0.00 0.00 0.00 3.10
169 170 9.528018 CCATATCTCTTTCTCTGTACTTTTCTC 57.472 37.037 0.00 0.00 0.00 2.87
171 172 8.261522 ACCCATATCTCTTTCTCTGTACTTTTC 58.738 37.037 0.00 0.00 0.00 2.29
172 173 8.043710 CACCCATATCTCTTTCTCTGTACTTTT 58.956 37.037 0.00 0.00 0.00 2.27
173 174 7.560368 CACCCATATCTCTTTCTCTGTACTTT 58.440 38.462 0.00 0.00 0.00 2.66
174 175 6.407525 GCACCCATATCTCTTTCTCTGTACTT 60.408 42.308 0.00 0.00 0.00 2.24
175 176 5.069781 GCACCCATATCTCTTTCTCTGTACT 59.930 44.000 0.00 0.00 0.00 2.73
176 177 5.293560 GCACCCATATCTCTTTCTCTGTAC 58.706 45.833 0.00 0.00 0.00 2.90
178 179 3.181471 CGCACCCATATCTCTTTCTCTGT 60.181 47.826 0.00 0.00 0.00 3.41
180 181 3.034635 ACGCACCCATATCTCTTTCTCT 58.965 45.455 0.00 0.00 0.00 3.10
182 183 2.766263 TCACGCACCCATATCTCTTTCT 59.234 45.455 0.00 0.00 0.00 2.52
183 184 3.126831 CTCACGCACCCATATCTCTTTC 58.873 50.000 0.00 0.00 0.00 2.62
184 185 2.766263 TCTCACGCACCCATATCTCTTT 59.234 45.455 0.00 0.00 0.00 2.52
185 186 2.363680 CTCTCACGCACCCATATCTCTT 59.636 50.000 0.00 0.00 0.00 2.85
186 187 1.959985 CTCTCACGCACCCATATCTCT 59.040 52.381 0.00 0.00 0.00 3.10
187 188 1.957177 TCTCTCACGCACCCATATCTC 59.043 52.381 0.00 0.00 0.00 2.75
188 189 1.959985 CTCTCTCACGCACCCATATCT 59.040 52.381 0.00 0.00 0.00 1.98
189 190 1.957177 TCTCTCTCACGCACCCATATC 59.043 52.381 0.00 0.00 0.00 1.63
190 191 1.959985 CTCTCTCTCACGCACCCATAT 59.040 52.381 0.00 0.00 0.00 1.78
191 192 1.064685 TCTCTCTCTCACGCACCCATA 60.065 52.381 0.00 0.00 0.00 2.74
192 193 0.323816 TCTCTCTCTCACGCACCCAT 60.324 55.000 0.00 0.00 0.00 4.00
193 194 0.539669 TTCTCTCTCTCACGCACCCA 60.540 55.000 0.00 0.00 0.00 4.51
194 195 0.172352 CTTCTCTCTCTCACGCACCC 59.828 60.000 0.00 0.00 0.00 4.61
196 197 2.999507 TTCTTCTCTCTCTCACGCAC 57.000 50.000 0.00 0.00 0.00 5.34
198 199 2.425312 TCCATTCTTCTCTCTCTCACGC 59.575 50.000 0.00 0.00 0.00 5.34
199 200 3.944650 TCTCCATTCTTCTCTCTCTCACG 59.055 47.826 0.00 0.00 0.00 4.35
201 202 6.924913 TTTTCTCCATTCTTCTCTCTCTCA 57.075 37.500 0.00 0.00 0.00 3.27
202 203 7.610865 TCTTTTTCTCCATTCTTCTCTCTCTC 58.389 38.462 0.00 0.00 0.00 3.20
203 204 7.310609 CCTCTTTTTCTCCATTCTTCTCTCTCT 60.311 40.741 0.00 0.00 0.00 3.10
204 205 6.818142 CCTCTTTTTCTCCATTCTTCTCTCTC 59.182 42.308 0.00 0.00 0.00 3.20
206 207 6.371271 CACCTCTTTTTCTCCATTCTTCTCTC 59.629 42.308 0.00 0.00 0.00 3.20
208 209 5.414144 CCACCTCTTTTTCTCCATTCTTCTC 59.586 44.000 0.00 0.00 0.00 2.87
209 210 5.073691 TCCACCTCTTTTTCTCCATTCTTCT 59.926 40.000 0.00 0.00 0.00 2.85
212 213 4.657013 GTCCACCTCTTTTTCTCCATTCT 58.343 43.478 0.00 0.00 0.00 2.40
213 214 3.437049 CGTCCACCTCTTTTTCTCCATTC 59.563 47.826 0.00 0.00 0.00 2.67
216 217 1.542547 GCGTCCACCTCTTTTTCTCCA 60.543 52.381 0.00 0.00 0.00 3.86
217 218 1.157585 GCGTCCACCTCTTTTTCTCC 58.842 55.000 0.00 0.00 0.00 3.71
219 220 1.228657 GCGCGTCCACCTCTTTTTCT 61.229 55.000 8.43 0.00 0.00 2.52
220 221 1.206831 GCGCGTCCACCTCTTTTTC 59.793 57.895 8.43 0.00 0.00 2.29
221 222 2.604174 CGCGCGTCCACCTCTTTTT 61.604 57.895 24.19 0.00 0.00 1.94
222 223 3.041940 CGCGCGTCCACCTCTTTT 61.042 61.111 24.19 0.00 0.00 2.27
223 224 4.295119 ACGCGCGTCCACCTCTTT 62.295 61.111 32.73 2.20 0.00 2.52
229 230 4.400109 TCTCTCACGCGCGTCCAC 62.400 66.667 35.61 0.00 0.00 4.02
230 231 4.103103 CTCTCTCACGCGCGTCCA 62.103 66.667 35.61 21.66 0.00 4.02
231 232 3.726631 CTCTCTCTCACGCGCGTCC 62.727 68.421 35.61 0.00 0.00 4.79
233 234 2.742760 TCTCTCTCTCACGCGCGT 60.743 61.111 32.73 32.73 0.00 6.01
234 235 2.022623 CTCTCTCTCTCACGCGCG 59.977 66.667 30.96 30.96 0.00 6.86
236 237 1.798223 CTATCCTCTCTCTCTCACGCG 59.202 57.143 3.53 3.53 0.00 6.01
237 238 3.120321 TCTATCCTCTCTCTCTCACGC 57.880 52.381 0.00 0.00 0.00 5.34
238 239 4.956085 TCTTCTATCCTCTCTCTCTCACG 58.044 47.826 0.00 0.00 0.00 4.35
239 240 7.607991 CCTTATCTTCTATCCTCTCTCTCTCAC 59.392 44.444 0.00 0.00 0.00 3.51
240 241 7.294720 ACCTTATCTTCTATCCTCTCTCTCTCA 59.705 40.741 0.00 0.00 0.00 3.27
241 242 7.607991 CACCTTATCTTCTATCCTCTCTCTCTC 59.392 44.444 0.00 0.00 0.00 3.20
243 244 6.659242 CCACCTTATCTTCTATCCTCTCTCTC 59.341 46.154 0.00 0.00 0.00 3.20
244 245 6.468651 CCCACCTTATCTTCTATCCTCTCTCT 60.469 46.154 0.00 0.00 0.00 3.10
247 248 4.221924 GCCCACCTTATCTTCTATCCTCTC 59.778 50.000 0.00 0.00 0.00 3.20
248 249 4.164204 GCCCACCTTATCTTCTATCCTCT 58.836 47.826 0.00 0.00 0.00 3.69
249 250 3.262151 GGCCCACCTTATCTTCTATCCTC 59.738 52.174 0.00 0.00 0.00 3.71
250 251 3.252351 GGCCCACCTTATCTTCTATCCT 58.748 50.000 0.00 0.00 0.00 3.24
251 252 2.306219 GGGCCCACCTTATCTTCTATCC 59.694 54.545 19.95 0.00 35.85 2.59
253 254 2.349445 GGGGCCCACCTTATCTTCTAT 58.651 52.381 26.86 0.00 40.03 1.98
254 255 1.697945 GGGGGCCCACCTTATCTTCTA 60.698 57.143 26.86 0.00 40.03 2.10
255 256 0.994050 GGGGGCCCACCTTATCTTCT 60.994 60.000 26.86 0.00 40.03 2.85
257 258 1.230482 TGGGGGCCCACCTTATCTT 60.230 57.895 25.09 0.00 41.89 2.40
258 259 2.464062 TGGGGGCCCACCTTATCT 59.536 61.111 25.09 0.00 41.89 1.98
266 267 3.642503 CGTAAGTGTGGGGGCCCA 61.643 66.667 26.86 7.88 45.02 5.36
278 279 8.040066 CAGCCATTTAAGGTCTGACACGTAAG 62.040 46.154 10.38 0.00 37.84 2.34
279 280 3.998341 GCCATTTAAGGTCTGACACGTAA 59.002 43.478 10.38 5.55 0.00 3.18
280 281 3.259876 AGCCATTTAAGGTCTGACACGTA 59.740 43.478 10.38 0.00 0.00 3.57
281 282 2.038557 AGCCATTTAAGGTCTGACACGT 59.961 45.455 10.38 0.56 0.00 4.49
284 285 2.290896 CCCAGCCATTTAAGGTCTGACA 60.291 50.000 10.38 0.00 35.91 3.58
285 286 2.026262 TCCCAGCCATTTAAGGTCTGAC 60.026 50.000 0.00 0.00 35.91 3.51
286 287 2.239654 CTCCCAGCCATTTAAGGTCTGA 59.760 50.000 0.00 0.00 35.91 3.27
289 290 1.393603 GCTCCCAGCCATTTAAGGTC 58.606 55.000 0.00 0.00 34.48 3.85
290 291 0.394352 CGCTCCCAGCCATTTAAGGT 60.394 55.000 0.00 0.00 38.18 3.50
291 292 1.728490 GCGCTCCCAGCCATTTAAGG 61.728 60.000 0.00 0.00 38.18 2.69
292 293 1.031571 TGCGCTCCCAGCCATTTAAG 61.032 55.000 9.73 0.00 38.18 1.85
294 295 1.748879 GTGCGCTCCCAGCCATTTA 60.749 57.895 9.73 0.00 38.18 1.40
295 296 3.064324 GTGCGCTCCCAGCCATTT 61.064 61.111 9.73 0.00 38.18 2.32
346 347 3.917985 GGAAATGTTTACAATCGGCACAC 59.082 43.478 0.00 0.00 0.00 3.82
347 348 3.057174 GGGAAATGTTTACAATCGGCACA 60.057 43.478 0.00 0.00 0.00 4.57
348 349 3.192633 AGGGAAATGTTTACAATCGGCAC 59.807 43.478 0.00 0.00 0.00 5.01
349 350 3.426615 AGGGAAATGTTTACAATCGGCA 58.573 40.909 0.00 0.00 0.00 5.69
350 351 4.450082 AAGGGAAATGTTTACAATCGGC 57.550 40.909 0.00 0.00 0.00 5.54
355 356 9.936759 GGAATGAATAAAGGGAAATGTTTACAA 57.063 29.630 0.00 0.00 0.00 2.41
356 357 8.536175 GGGAATGAATAAAGGGAAATGTTTACA 58.464 33.333 0.00 0.00 0.00 2.41
357 358 8.758829 AGGGAATGAATAAAGGGAAATGTTTAC 58.241 33.333 0.00 0.00 0.00 2.01
359 360 7.623630 CAGGGAATGAATAAAGGGAAATGTTT 58.376 34.615 0.00 0.00 0.00 2.83
360 361 6.352137 GCAGGGAATGAATAAAGGGAAATGTT 60.352 38.462 0.00 0.00 0.00 2.71
361 362 5.129320 GCAGGGAATGAATAAAGGGAAATGT 59.871 40.000 0.00 0.00 0.00 2.71
363 364 4.655649 GGCAGGGAATGAATAAAGGGAAAT 59.344 41.667 0.00 0.00 0.00 2.17
364 365 4.030216 GGCAGGGAATGAATAAAGGGAAA 58.970 43.478 0.00 0.00 0.00 3.13
365 366 3.272020 AGGCAGGGAATGAATAAAGGGAA 59.728 43.478 0.00 0.00 0.00 3.97
366 367 2.858768 AGGCAGGGAATGAATAAAGGGA 59.141 45.455 0.00 0.00 0.00 4.20
367 368 3.225940 GAGGCAGGGAATGAATAAAGGG 58.774 50.000 0.00 0.00 0.00 3.95
368 369 3.117360 AGGAGGCAGGGAATGAATAAAGG 60.117 47.826 0.00 0.00 0.00 3.11
369 370 4.176120 AGGAGGCAGGGAATGAATAAAG 57.824 45.455 0.00 0.00 0.00 1.85
371 372 3.117512 GGAAGGAGGCAGGGAATGAATAA 60.118 47.826 0.00 0.00 0.00 1.40
372 373 2.443255 GGAAGGAGGCAGGGAATGAATA 59.557 50.000 0.00 0.00 0.00 1.75
373 374 1.216427 GGAAGGAGGCAGGGAATGAAT 59.784 52.381 0.00 0.00 0.00 2.57
374 375 0.625849 GGAAGGAGGCAGGGAATGAA 59.374 55.000 0.00 0.00 0.00 2.57
375 376 1.626356 CGGAAGGAGGCAGGGAATGA 61.626 60.000 0.00 0.00 0.00 2.57
378 379 2.203938 ACGGAAGGAGGCAGGGAA 60.204 61.111 0.00 0.00 0.00 3.97
379 380 3.003173 CACGGAAGGAGGCAGGGA 61.003 66.667 0.00 0.00 0.00 4.20
380 381 4.785453 GCACGGAAGGAGGCAGGG 62.785 72.222 0.00 0.00 0.00 4.45
381 382 4.785453 GGCACGGAAGGAGGCAGG 62.785 72.222 0.00 0.00 36.19 4.85
382 383 3.259633 AAGGCACGGAAGGAGGCAG 62.260 63.158 0.00 0.00 38.06 4.85
383 384 3.249189 AAGGCACGGAAGGAGGCA 61.249 61.111 0.00 0.00 38.06 4.75
385 386 1.842381 AAGGAAGGCACGGAAGGAGG 61.842 60.000 0.00 0.00 0.00 4.30
387 388 1.677552 GAAGGAAGGCACGGAAGGA 59.322 57.895 0.00 0.00 0.00 3.36
388 389 1.377333 GGAAGGAAGGCACGGAAGG 60.377 63.158 0.00 0.00 0.00 3.46
389 390 0.674895 CAGGAAGGAAGGCACGGAAG 60.675 60.000 0.00 0.00 0.00 3.46
392 393 0.541863 ATACAGGAAGGAAGGCACGG 59.458 55.000 0.00 0.00 0.00 4.94
394 395 4.423625 ACATATACAGGAAGGAAGGCAC 57.576 45.455 0.00 0.00 0.00 5.01
395 396 4.040461 GCTACATATACAGGAAGGAAGGCA 59.960 45.833 0.00 0.00 0.00 4.75
396 397 4.563786 GGCTACATATACAGGAAGGAAGGC 60.564 50.000 0.00 0.00 0.00 4.35
399 400 5.665812 ACAAGGCTACATATACAGGAAGGAA 59.334 40.000 0.00 0.00 0.00 3.36
400 401 5.216622 ACAAGGCTACATATACAGGAAGGA 58.783 41.667 0.00 0.00 0.00 3.36
403 404 5.304614 GGAGACAAGGCTACATATACAGGAA 59.695 44.000 0.00 0.00 0.00 3.36
407 408 6.382859 TCAAAGGAGACAAGGCTACATATACA 59.617 38.462 0.00 0.00 0.00 2.29
408 409 6.702282 GTCAAAGGAGACAAGGCTACATATAC 59.298 42.308 0.00 0.00 38.40 1.47
409 410 6.611642 AGTCAAAGGAGACAAGGCTACATATA 59.388 38.462 0.00 0.00 40.98 0.86
410 411 5.426833 AGTCAAAGGAGACAAGGCTACATAT 59.573 40.000 0.00 0.00 40.98 1.78
411 412 4.777896 AGTCAAAGGAGACAAGGCTACATA 59.222 41.667 0.00 0.00 40.98 2.29
412 413 3.584848 AGTCAAAGGAGACAAGGCTACAT 59.415 43.478 0.00 0.00 40.98 2.29
413 414 2.972713 AGTCAAAGGAGACAAGGCTACA 59.027 45.455 0.00 0.00 40.98 2.74
414 415 3.686916 AGTCAAAGGAGACAAGGCTAC 57.313 47.619 0.00 0.00 40.98 3.58
415 416 4.102524 TGAAAGTCAAAGGAGACAAGGCTA 59.897 41.667 0.00 0.00 40.98 3.93
416 417 3.117888 TGAAAGTCAAAGGAGACAAGGCT 60.118 43.478 0.00 0.00 40.98 4.58
417 418 3.214328 TGAAAGTCAAAGGAGACAAGGC 58.786 45.455 0.00 0.00 40.98 4.35
419 420 5.278169 CCACATGAAAGTCAAAGGAGACAAG 60.278 44.000 0.00 0.00 40.98 3.16
420 421 4.580167 CCACATGAAAGTCAAAGGAGACAA 59.420 41.667 0.00 0.00 40.98 3.18
421 422 4.136796 CCACATGAAAGTCAAAGGAGACA 58.863 43.478 0.00 0.00 40.98 3.41
422 423 3.503748 CCCACATGAAAGTCAAAGGAGAC 59.496 47.826 0.00 0.00 38.81 3.36
423 424 3.394274 TCCCACATGAAAGTCAAAGGAGA 59.606 43.478 0.00 0.00 0.00 3.71
425 426 3.486383 GTCCCACATGAAAGTCAAAGGA 58.514 45.455 0.00 0.00 0.00 3.36
427 428 3.221771 TGGTCCCACATGAAAGTCAAAG 58.778 45.455 0.00 0.00 0.00 2.77
428 429 3.304911 TGGTCCCACATGAAAGTCAAA 57.695 42.857 0.00 0.00 0.00 2.69
429 430 2.955660 GTTGGTCCCACATGAAAGTCAA 59.044 45.455 0.00 0.00 0.00 3.18
430 431 2.582052 GTTGGTCCCACATGAAAGTCA 58.418 47.619 0.00 0.00 0.00 3.41
431 432 1.886542 GGTTGGTCCCACATGAAAGTC 59.113 52.381 0.00 0.00 0.00 3.01
432 433 1.499007 AGGTTGGTCCCACATGAAAGT 59.501 47.619 0.00 0.00 36.75 2.66
438 439 1.780309 TCTTTGAGGTTGGTCCCACAT 59.220 47.619 0.00 0.00 36.75 3.21
439 440 1.142870 CTCTTTGAGGTTGGTCCCACA 59.857 52.381 0.00 0.00 36.75 4.17
440 441 1.420138 TCTCTTTGAGGTTGGTCCCAC 59.580 52.381 0.00 0.00 36.75 4.61
441 442 1.814429 TCTCTTTGAGGTTGGTCCCA 58.186 50.000 0.00 0.00 36.75 4.37
442 443 4.779993 ATATCTCTTTGAGGTTGGTCCC 57.220 45.455 0.00 0.00 36.75 4.46
443 444 5.995446 AGAATATCTCTTTGAGGTTGGTCC 58.005 41.667 0.00 0.00 0.00 4.46
444 445 6.987404 GGTAGAATATCTCTTTGAGGTTGGTC 59.013 42.308 0.00 0.00 35.41 4.02
445 446 6.443849 TGGTAGAATATCTCTTTGAGGTTGGT 59.556 38.462 0.00 0.00 35.41 3.67
446 447 6.763610 GTGGTAGAATATCTCTTTGAGGTTGG 59.236 42.308 0.00 0.00 35.41 3.77
448 449 7.038302 TGTGTGGTAGAATATCTCTTTGAGGTT 60.038 37.037 0.00 0.00 35.41 3.50
449 450 6.440647 TGTGTGGTAGAATATCTCTTTGAGGT 59.559 38.462 0.00 0.00 35.41 3.85
450 451 6.878317 TGTGTGGTAGAATATCTCTTTGAGG 58.122 40.000 0.00 0.00 35.41 3.86
452 453 6.155221 AGCTGTGTGGTAGAATATCTCTTTGA 59.845 38.462 0.00 0.00 35.41 2.69
454 455 6.070538 ACAGCTGTGTGGTAGAATATCTCTTT 60.071 38.462 20.97 0.00 34.75 2.52
455 456 5.423610 ACAGCTGTGTGGTAGAATATCTCTT 59.576 40.000 20.97 0.00 34.75 2.85
456 457 4.959210 ACAGCTGTGTGGTAGAATATCTCT 59.041 41.667 20.97 0.00 34.75 3.10
457 458 5.269505 ACAGCTGTGTGGTAGAATATCTC 57.730 43.478 20.97 0.00 34.75 2.75
475 476 0.394565 CCTATCCACTAGCCCACAGC 59.605 60.000 0.00 0.00 44.25 4.40
476 477 0.394565 GCCTATCCACTAGCCCACAG 59.605 60.000 0.00 0.00 0.00 3.66
479 480 1.837051 CGGCCTATCCACTAGCCCA 60.837 63.158 0.00 0.00 34.01 5.36
480 481 2.584391 CCGGCCTATCCACTAGCCC 61.584 68.421 0.00 0.00 34.01 5.19
482 483 3.060866 CCCGGCCTATCCACTAGC 58.939 66.667 0.00 0.00 34.01 3.42
483 484 1.194781 ATGCCCGGCCTATCCACTAG 61.195 60.000 7.03 0.00 34.01 2.57
484 485 1.152118 ATGCCCGGCCTATCCACTA 60.152 57.895 7.03 0.00 34.01 2.74
487 488 2.447572 TCATGCCCGGCCTATCCA 60.448 61.111 7.03 0.00 34.01 3.41
488 489 2.032681 GTCATGCCCGGCCTATCC 59.967 66.667 7.03 0.00 0.00 2.59
490 491 2.072487 AGTGTCATGCCCGGCCTAT 61.072 57.895 7.03 0.00 0.00 2.57
491 492 2.687200 AGTGTCATGCCCGGCCTA 60.687 61.111 7.03 0.00 0.00 3.93
492 493 4.415150 CAGTGTCATGCCCGGCCT 62.415 66.667 7.03 0.00 0.00 5.19
494 495 3.704231 ATCCAGTGTCATGCCCGGC 62.704 63.158 1.04 1.04 0.00 6.13
495 496 1.077501 AATCCAGTGTCATGCCCGG 60.078 57.895 0.00 0.00 0.00 5.73
496 497 1.378882 CCAATCCAGTGTCATGCCCG 61.379 60.000 0.00 0.00 0.00 6.13
498 499 1.811860 GCCAATCCAGTGTCATGCC 59.188 57.895 0.00 0.00 0.00 4.40
499 500 1.430632 CGCCAATCCAGTGTCATGC 59.569 57.895 0.00 0.00 0.00 4.06
502 503 1.302431 CACCGCCAATCCAGTGTCA 60.302 57.895 0.00 0.00 0.00 3.58
503 504 2.040544 CCACCGCCAATCCAGTGTC 61.041 63.158 0.00 0.00 0.00 3.67
504 505 2.034066 CCACCGCCAATCCAGTGT 59.966 61.111 0.00 0.00 0.00 3.55
505 506 3.443045 GCCACCGCCAATCCAGTG 61.443 66.667 0.00 0.00 0.00 3.66
519 520 2.221299 GGTACTGGACTGGTGGCCA 61.221 63.158 0.00 0.00 0.00 5.36
520 521 1.774894 TTGGTACTGGACTGGTGGCC 61.775 60.000 0.00 0.00 0.00 5.36
524 525 3.497942 GGAAACATTGGTACTGGACTGGT 60.498 47.826 0.00 0.00 0.00 4.00
525 526 3.081804 GGAAACATTGGTACTGGACTGG 58.918 50.000 0.00 0.00 0.00 4.00
526 527 3.750371 TGGAAACATTGGTACTGGACTG 58.250 45.455 0.00 0.00 33.40 3.51
537 538 6.151287 GACTCGGTGTCCATGGAAACATTG 62.151 50.000 31.79 22.50 43.57 2.82
538 539 4.117799 GACTCGGTGTCCATGGAAACATT 61.118 47.826 31.79 15.27 43.57 2.71
539 540 2.615493 GACTCGGTGTCCATGGAAACAT 60.615 50.000 31.79 16.62 43.61 2.71
540 541 1.270625 GACTCGGTGTCCATGGAAACA 60.271 52.381 31.79 18.46 41.86 2.83
541 542 1.439679 GACTCGGTGTCCATGGAAAC 58.560 55.000 24.99 24.99 39.69 2.78
542 543 0.037697 CGACTCGGTGTCCATGGAAA 60.038 55.000 18.20 8.75 42.49 3.13
543 544 0.896479 TCGACTCGGTGTCCATGGAA 60.896 55.000 18.20 4.13 42.49 3.53
544 545 1.303806 TCGACTCGGTGTCCATGGA 60.304 57.895 11.44 11.44 42.49 3.41
546 547 1.153823 GGTCGACTCGGTGTCCATG 60.154 63.158 16.46 0.00 42.49 3.66
547 548 2.697761 CGGTCGACTCGGTGTCCAT 61.698 63.158 16.46 0.00 42.49 3.41
548 549 3.359523 CGGTCGACTCGGTGTCCA 61.360 66.667 16.46 0.00 42.49 4.02
549 550 4.112341 CCGGTCGACTCGGTGTCC 62.112 72.222 27.22 5.94 42.49 4.02
556 557 1.716826 CCTCTGTAGCCGGTCGACTC 61.717 65.000 16.46 4.72 0.00 3.36
557 558 1.749638 CCTCTGTAGCCGGTCGACT 60.750 63.158 16.46 0.00 0.00 4.18
558 559 2.799371 CCTCTGTAGCCGGTCGAC 59.201 66.667 7.13 7.13 0.00 4.20
559 560 3.138798 GCCTCTGTAGCCGGTCGA 61.139 66.667 1.90 0.00 0.00 4.20
560 561 2.711922 AAGCCTCTGTAGCCGGTCG 61.712 63.158 1.90 0.00 0.00 4.79
561 562 1.153549 CAAGCCTCTGTAGCCGGTC 60.154 63.158 1.90 0.00 0.00 4.79
562 563 1.913762 ACAAGCCTCTGTAGCCGGT 60.914 57.895 1.90 0.00 0.00 5.28
563 564 1.448540 CACAAGCCTCTGTAGCCGG 60.449 63.158 0.00 0.00 0.00 6.13
564 565 1.016130 CACACAAGCCTCTGTAGCCG 61.016 60.000 0.00 0.00 0.00 5.52
565 566 1.301677 GCACACAAGCCTCTGTAGCC 61.302 60.000 0.00 0.00 0.00 3.93
566 567 2.166270 GCACACAAGCCTCTGTAGC 58.834 57.895 0.00 0.00 0.00 3.58
576 577 2.568090 GCAATCCGGGCACACAAG 59.432 61.111 0.00 0.00 0.00 3.16
578 579 3.965258 AGGCAATCCGGGCACACA 61.965 61.111 0.00 0.00 37.47 3.72
580 581 4.738998 CCAGGCAATCCGGGCACA 62.739 66.667 0.00 0.00 40.81 4.57
587 588 3.125376 ATCCCTCGCCAGGCAATCC 62.125 63.158 13.30 0.00 38.72 3.01
589 590 2.194056 CATCCCTCGCCAGGCAAT 59.806 61.111 13.30 0.00 38.72 3.56
593 594 4.864334 GGTGCATCCCTCGCCAGG 62.864 72.222 0.00 0.00 39.98 4.45
602 603 0.614415 TGGTCCAAATGGGTGCATCC 60.614 55.000 9.82 9.82 38.11 3.51
603 604 0.819582 CTGGTCCAAATGGGTGCATC 59.180 55.000 0.00 0.00 38.11 3.91
604 605 1.259840 GCTGGTCCAAATGGGTGCAT 61.260 55.000 0.00 0.00 38.11 3.96
605 606 1.907807 GCTGGTCCAAATGGGTGCA 60.908 57.895 0.00 0.00 38.11 4.57
606 607 2.649129 GGCTGGTCCAAATGGGTGC 61.649 63.158 0.00 0.00 38.11 5.01
607 608 1.984026 GGGCTGGTCCAAATGGGTG 60.984 63.158 0.00 0.00 38.11 4.61
608 609 2.445155 GGGCTGGTCCAAATGGGT 59.555 61.111 0.00 0.00 38.11 4.51
609 610 2.755469 CGGGCTGGTCCAAATGGG 60.755 66.667 0.00 0.00 36.21 4.00
610 611 3.451894 GCGGGCTGGTCCAAATGG 61.452 66.667 0.00 0.00 36.21 3.16
611 612 2.361610 AGCGGGCTGGTCCAAATG 60.362 61.111 0.00 0.00 36.21 2.32
612 613 2.361610 CAGCGGGCTGGTCCAAAT 60.362 61.111 12.78 0.00 40.17 2.32
621 622 0.320771 CTTGTAAGTGACAGCGGGCT 60.321 55.000 0.00 0.00 39.88 5.19
622 623 0.602905 ACTTGTAAGTGACAGCGGGC 60.603 55.000 0.00 0.00 39.88 6.13
623 624 1.798813 GAACTTGTAAGTGACAGCGGG 59.201 52.381 0.00 0.00 39.88 6.13
625 626 1.455786 CGGAACTTGTAAGTGACAGCG 59.544 52.381 0.00 0.00 39.88 5.18
626 627 2.221055 CACGGAACTTGTAAGTGACAGC 59.779 50.000 0.00 0.00 39.88 4.40
628 629 2.828877 CCACGGAACTTGTAAGTGACA 58.171 47.619 0.00 0.00 39.66 3.58
635 636 0.319083 ACATCGCCACGGAACTTGTA 59.681 50.000 0.00 0.00 0.00 2.41
650 651 9.427127 GCAACTTAAGATAAATCTTCGAACATC 57.573 33.333 10.09 0.00 43.27 3.06
664 665 7.275888 CCATTATTGGCAGCAACTTAAGATA 57.724 36.000 10.09 0.00 35.85 1.98
680 681 2.937469 TTGAAGCCGTGCCATTATTG 57.063 45.000 0.00 0.00 0.00 1.90
688 689 5.898630 TTTTTAAATCTTTGAAGCCGTGC 57.101 34.783 0.00 0.00 0.00 5.34
713 714 7.805071 CCACTTTTCAAATAACTGATGACAGAC 59.195 37.037 0.00 0.00 46.03 3.51
718 719 7.432869 CAACCCACTTTTCAAATAACTGATGA 58.567 34.615 0.00 0.00 0.00 2.92
719 720 6.146021 GCAACCCACTTTTCAAATAACTGATG 59.854 38.462 0.00 0.00 0.00 3.07
720 721 6.223120 GCAACCCACTTTTCAAATAACTGAT 58.777 36.000 0.00 0.00 0.00 2.90
721 722 5.596845 GCAACCCACTTTTCAAATAACTGA 58.403 37.500 0.00 0.00 0.00 3.41
722 723 4.444056 CGCAACCCACTTTTCAAATAACTG 59.556 41.667 0.00 0.00 0.00 3.16
729 2624 1.335496 GCTACGCAACCCACTTTTCAA 59.665 47.619 0.00 0.00 0.00 2.69
771 2666 7.451255 ACATGGTACTGGAAGAATTTTGAATCA 59.549 33.333 0.00 0.00 37.43 2.57
774 2669 6.775142 TGACATGGTACTGGAAGAATTTTGAA 59.225 34.615 0.00 0.00 37.43 2.69
785 2681 8.670521 AATATAGATCATGACATGGTACTGGA 57.329 34.615 15.37 5.85 0.00 3.86
792 2689 9.761504 GTCTGGATAATATAGATCATGACATGG 57.238 37.037 15.37 0.00 32.29 3.66
811 2708 2.614987 GCTCTCACAAGCAAGTCTGGAT 60.615 50.000 0.00 0.00 42.05 3.41
820 2717 2.680974 AAAGGGCGCTCTCACAAGCA 62.681 55.000 11.99 0.00 42.62 3.91
839 2736 3.066291 ACGTATGTGGCAAGAAATGGA 57.934 42.857 0.00 0.00 0.00 3.41
854 2751 3.015327 CGCCCCTATCTAAGCTACGTAT 58.985 50.000 0.00 0.00 0.00 3.06
856 2753 1.202855 TCGCCCCTATCTAAGCTACGT 60.203 52.381 0.00 0.00 0.00 3.57
880 2779 2.978010 CACACCGGCCCACTGAAC 60.978 66.667 0.00 0.00 0.00 3.18
956 2856 6.915843 AGCATACAAACGTAAAAGAAAAGGTG 59.084 34.615 0.00 0.00 0.00 4.00
960 2860 9.005777 AGGATAGCATACAAACGTAAAAGAAAA 57.994 29.630 0.00 0.00 0.00 2.29
965 2865 6.646267 AGGAGGATAGCATACAAACGTAAAA 58.354 36.000 0.00 0.00 0.00 1.52
971 2871 5.540719 AGGACTAGGAGGATAGCATACAAAC 59.459 44.000 0.00 0.00 0.00 2.93
979 2879 1.148236 ACCCAGGACTAGGAGGATAGC 59.852 57.143 0.00 0.00 0.00 2.97
980 2880 2.883026 CACCCAGGACTAGGAGGATAG 58.117 57.143 0.00 0.00 0.00 2.08
982 2882 0.399233 GCACCCAGGACTAGGAGGAT 60.399 60.000 0.00 0.00 0.00 3.24
983 2883 1.001760 GCACCCAGGACTAGGAGGA 59.998 63.158 0.00 0.00 0.00 3.71
984 2884 0.692419 ATGCACCCAGGACTAGGAGG 60.692 60.000 0.00 0.00 0.00 4.30
985 2885 2.088104 TATGCACCCAGGACTAGGAG 57.912 55.000 0.00 0.00 0.00 3.69
996 2928 2.618709 GCTGAGTGGTATTTATGCACCC 59.381 50.000 0.00 0.00 33.61 4.61
1083 3015 1.271054 GCTTCTTCTTCCTCTGGCACA 60.271 52.381 0.00 0.00 0.00 4.57
1136 3068 5.353394 TTTTACTTACAGGAGGCGATGAT 57.647 39.130 0.00 0.00 0.00 2.45
1169 3101 2.238646 TCATAACAGCTGGGGTCGATTT 59.761 45.455 19.93 2.78 0.00 2.17
1170 3102 1.837439 TCATAACAGCTGGGGTCGATT 59.163 47.619 19.93 3.57 0.00 3.34
1171 3103 1.496060 TCATAACAGCTGGGGTCGAT 58.504 50.000 19.93 0.00 0.00 3.59
1172 3104 1.271856 TTCATAACAGCTGGGGTCGA 58.728 50.000 19.93 4.84 0.00 4.20
1173 3105 2.332063 ATTCATAACAGCTGGGGTCG 57.668 50.000 19.93 2.28 0.00 4.79
1207 3139 1.094785 ATCCACGCGAAAATCCCAAG 58.905 50.000 15.93 0.00 0.00 3.61
1220 3153 5.808042 ACTTCAAATGAGATGAATCCACG 57.192 39.130 0.00 0.00 36.30 4.94
1256 3192 1.074248 CCGCCACCCCAACTAAACT 59.926 57.895 0.00 0.00 0.00 2.66
1287 3229 4.253442 TGTACATGTCGTGCACCG 57.747 55.556 12.15 6.81 35.03 4.94
1292 3234 3.069216 CGGCGTGTACATGTCGTG 58.931 61.111 29.22 7.02 40.25 4.35
1454 3403 1.301244 CGGTCACTGTCTGCTGCTT 60.301 57.895 0.00 0.00 0.00 3.91
1517 4753 7.484007 GCAGTACATAATAATTCTCATGCATGC 59.516 37.037 22.25 11.82 0.00 4.06
1600 5000 6.261603 GCAATCAAGATGAATAGATGACCACA 59.738 38.462 0.00 0.00 0.00 4.17
1685 5454 9.770097 TTTTCTCATTATTGCTTCGAGATAGAT 57.230 29.630 0.00 0.00 33.02 1.98
1688 5457 7.495606 TGCTTTTCTCATTATTGCTTCGAGATA 59.504 33.333 0.00 0.00 33.02 1.98
1708 5478 3.572255 TCTTAGCCATTTTCGGTGCTTTT 59.428 39.130 0.00 0.00 35.34 2.27
1742 5512 0.969894 GGTGAGATATCGGGGGTGAG 59.030 60.000 0.00 0.00 0.00 3.51
1743 5513 0.263468 TGGTGAGATATCGGGGGTGA 59.737 55.000 0.00 0.00 0.00 4.02
1744 5514 1.352083 ATGGTGAGATATCGGGGGTG 58.648 55.000 0.00 0.00 0.00 4.61
1745 5515 2.118403 AATGGTGAGATATCGGGGGT 57.882 50.000 0.00 0.00 0.00 4.95
1873 5647 7.067372 TGCATTTATTCCGAGTCAAAGATCATT 59.933 33.333 0.00 0.00 0.00 2.57
1887 5661 6.648310 AGACACATCTAGATGCATTTATTCCG 59.352 38.462 28.86 4.87 42.39 4.30
1888 5662 7.094890 CCAGACACATCTAGATGCATTTATTCC 60.095 40.741 28.86 10.48 42.39 3.01
1896 5670 2.113807 AGCCAGACACATCTAGATGCA 58.886 47.619 28.86 0.00 42.39 3.96
1899 5673 2.697751 GTCCAGCCAGACACATCTAGAT 59.302 50.000 0.00 0.00 36.73 1.98
1900 5674 2.103373 GTCCAGCCAGACACATCTAGA 58.897 52.381 0.00 0.00 36.73 2.43
1901 5675 2.106566 AGTCCAGCCAGACACATCTAG 58.893 52.381 6.50 0.00 39.34 2.43
1902 5676 2.238084 AGTCCAGCCAGACACATCTA 57.762 50.000 6.50 0.00 39.34 1.98
1903 5677 2.234908 GTTAGTCCAGCCAGACACATCT 59.765 50.000 6.50 0.00 39.34 2.90
1904 5678 2.028112 TGTTAGTCCAGCCAGACACATC 60.028 50.000 6.50 0.00 39.34 3.06
1905 5679 1.977854 TGTTAGTCCAGCCAGACACAT 59.022 47.619 6.50 0.00 39.34 3.21
1906 5680 1.419381 TGTTAGTCCAGCCAGACACA 58.581 50.000 6.50 0.66 39.34 3.72
1907 5681 2.622436 GATGTTAGTCCAGCCAGACAC 58.378 52.381 6.50 0.00 39.34 3.67
1908 5682 1.204704 CGATGTTAGTCCAGCCAGACA 59.795 52.381 6.50 0.00 39.34 3.41
1909 5683 1.471676 CCGATGTTAGTCCAGCCAGAC 60.472 57.143 0.00 0.00 37.01 3.51
1911 5685 0.811616 GCCGATGTTAGTCCAGCCAG 60.812 60.000 0.00 0.00 0.00 4.85
1914 5688 1.523938 GGGCCGATGTTAGTCCAGC 60.524 63.158 0.00 0.00 0.00 4.85
1915 5689 1.068741 GTAGGGCCGATGTTAGTCCAG 59.931 57.143 0.00 0.00 0.00 3.86
1917 5691 1.117150 TGTAGGGCCGATGTTAGTCC 58.883 55.000 0.00 0.00 0.00 3.85
1918 5692 3.470645 AATGTAGGGCCGATGTTAGTC 57.529 47.619 0.00 0.00 0.00 2.59
1919 5693 3.926058 AAATGTAGGGCCGATGTTAGT 57.074 42.857 0.00 0.00 0.00 2.24
1995 6442 6.613271 ACTCTTATGTCTGTCCTATGGTGAAT 59.387 38.462 0.00 0.00 0.00 2.57
2040 6510 6.668323 CCATGTACGTCTTGTTTCTCAAATT 58.332 36.000 0.00 0.00 35.48 1.82
2042 6512 4.024387 GCCATGTACGTCTTGTTTCTCAAA 60.024 41.667 0.00 0.00 35.48 2.69
2098 6692 1.344065 TTGTCGGCTTGGTCTTCCTA 58.656 50.000 0.00 0.00 34.23 2.94
2282 7106 5.189928 TGAACACTCTTTTCCTGCTAAACA 58.810 37.500 0.00 0.00 0.00 2.83
2354 7303 0.035056 CAGGTGTTCTGGGTGGGATC 60.035 60.000 0.00 0.00 39.76 3.36
2405 7354 2.383855 CTCCTTCTCGGACCTTGAGAT 58.616 52.381 0.48 0.00 41.80 2.75
2408 7357 0.408309 TCCTCCTTCTCGGACCTTGA 59.592 55.000 0.00 0.00 36.69 3.02
2409 7358 0.820871 CTCCTCCTTCTCGGACCTTG 59.179 60.000 0.00 0.00 36.69 3.61
2462 7411 1.544246 GGCAAAGTTCGCCTGGTATTT 59.456 47.619 0.00 0.00 46.56 1.40
2465 7414 4.390048 GGCAAAGTTCGCCTGGTA 57.610 55.556 0.00 0.00 46.56 3.25
2545 7496 4.019141 TCGTAAACATAATGGACCTGGGTT 60.019 41.667 0.00 0.00 0.00 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.