Multiple sequence alignment - TraesCS6B01G170300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G170300 chr6B 100.000 4775 0 0 1 4775 182592422 182587648 0.000000e+00 8818.0
1 TraesCS6B01G170300 chr6B 82.391 1079 125 39 1861 2929 218218289 218219312 0.000000e+00 880.0
2 TraesCS6B01G170300 chr6B 76.012 1013 118 54 2950 3945 218219421 218220325 4.450000e-110 409.0
3 TraesCS6B01G170300 chr6B 84.848 198 26 4 981 1176 218215406 218215601 3.770000e-46 196.0
4 TraesCS6B01G170300 chr6B 79.661 236 39 5 4495 4728 667227423 667227651 1.380000e-35 161.0
5 TraesCS6B01G170300 chr6D 89.282 1698 103 27 3081 4775 97923601 97921980 0.000000e+00 2054.0
6 TraesCS6B01G170300 chr6D 93.661 1199 41 12 1783 2974 97926359 97925189 0.000000e+00 1760.0
7 TraesCS6B01G170300 chr6D 91.996 987 37 9 844 1790 97927411 97926427 0.000000e+00 1347.0
8 TraesCS6B01G170300 chr6D 94.009 217 9 4 597 811 97927629 97927415 4.610000e-85 326.0
9 TraesCS6B01G170300 chr6D 96.575 146 5 0 2943 3088 97925129 97924984 4.770000e-60 243.0
10 TraesCS6B01G170300 chr6D 92.806 139 10 0 1 139 38239871 38239733 8.100000e-48 202.0
11 TraesCS6B01G170300 chr6D 87.248 149 7 9 422 570 97927817 97927681 4.950000e-35 159.0
12 TraesCS6B01G170300 chr6A 92.446 1165 62 15 285 1431 116985766 116984610 0.000000e+00 1640.0
13 TraesCS6B01G170300 chr6A 94.790 499 23 3 3551 4048 116943644 116943148 0.000000e+00 774.0
14 TraesCS6B01G170300 chr6A 90.101 596 35 9 250 831 117002928 117002343 0.000000e+00 752.0
15 TraesCS6B01G170300 chr6A 92.178 473 14 6 1995 2464 116959499 116959047 0.000000e+00 647.0
16 TraesCS6B01G170300 chr6A 84.202 652 71 13 4086 4728 116943142 116942514 5.290000e-169 604.0
17 TraesCS6B01G170300 chr6A 95.101 347 15 2 2600 2945 116946267 116945922 3.250000e-151 545.0
18 TraesCS6B01G170300 chr6A 96.587 293 10 0 2943 3235 116945809 116945517 2.000000e-133 486.0
19 TraesCS6B01G170300 chr6A 91.961 311 21 2 3224 3531 116945395 116945086 2.640000e-117 433.0
20 TraesCS6B01G170300 chr6A 91.321 265 16 3 1733 1996 116959862 116959604 5.880000e-94 355.0
21 TraesCS6B01G170300 chr6A 86.047 301 17 2 1461 1736 116984534 116984234 2.790000e-77 300.0
22 TraesCS6B01G170300 chr6A 91.608 143 12 0 1 143 346586633 346586491 1.050000e-46 198.0
23 TraesCS6B01G170300 chr6A 94.521 73 4 0 2446 2518 116957403 116957331 3.910000e-21 113.0
24 TraesCS6B01G170300 chr6A 90.361 83 3 1 2522 2599 116952824 116952742 2.350000e-18 104.0
25 TraesCS6B01G170300 chr7D 73.585 742 137 36 4016 4728 412684587 412685298 3.720000e-56 230.0
26 TraesCS6B01G170300 chr7D 72.437 751 152 37 4016 4728 632341090 632340357 6.310000e-44 189.0
27 TraesCS6B01G170300 chr7D 74.863 183 40 5 4120 4300 615369083 615368905 1.420000e-10 78.7
28 TraesCS6B01G170300 chr5D 94.074 135 7 1 1 134 128586554 128586688 2.250000e-48 204.0
29 TraesCS6B01G170300 chr3D 94.656 131 7 0 1 131 583585638 583585508 2.250000e-48 204.0
30 TraesCS6B01G170300 chr3D 83.019 159 22 3 4570 4728 270157019 270156866 6.440000e-29 139.0
31 TraesCS6B01G170300 chr7B 93.939 132 8 0 2 133 684588192 684588323 2.910000e-47 200.0
32 TraesCS6B01G170300 chr7B 91.667 144 11 1 1 144 400954721 400954863 1.050000e-46 198.0
33 TraesCS6B01G170300 chr7A 92.199 141 11 0 1 141 556382085 556381945 2.910000e-47 200.0
34 TraesCS6B01G170300 chr7A 79.787 94 19 0 4013 4106 307373583 307373490 8.570000e-08 69.4
35 TraesCS6B01G170300 chr2B 92.701 137 10 0 1 137 117071758 117071622 1.050000e-46 198.0
36 TraesCS6B01G170300 chr2B 100.000 28 0 0 4013 4040 693445277 693445250 9.000000e-03 52.8
37 TraesCS6B01G170300 chr2D 90.476 147 13 1 1 146 6518749 6518603 4.880000e-45 193.0
38 TraesCS6B01G170300 chr2D 74.017 458 75 30 4203 4632 617885940 617886381 3.850000e-31 147.0
39 TraesCS6B01G170300 chr1B 81.148 244 40 3 4477 4720 669218580 669218343 1.750000e-44 191.0
40 TraesCS6B01G170300 chr1D 83.007 153 18 2 4554 4706 480995409 480995265 1.080000e-26 132.0
41 TraesCS6B01G170300 chr1D 76.419 229 49 1 4500 4728 150906969 150907192 8.390000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G170300 chr6B 182587648 182592422 4774 True 8818.000000 8818 100.000000 1 4775 1 chr6B.!!$R1 4774
1 TraesCS6B01G170300 chr6B 218215406 218220325 4919 False 495.000000 880 81.083667 981 3945 3 chr6B.!!$F2 2964
2 TraesCS6B01G170300 chr6D 97921980 97927817 5837 True 981.500000 2054 92.128500 422 4775 6 chr6D.!!$R2 4353
3 TraesCS6B01G170300 chr6A 116984234 116985766 1532 True 970.000000 1640 89.246500 285 1736 2 chr6A.!!$R6 1451
4 TraesCS6B01G170300 chr6A 117002343 117002928 585 True 752.000000 752 90.101000 250 831 1 chr6A.!!$R2 581
5 TraesCS6B01G170300 chr6A 116942514 116946267 3753 True 568.400000 774 92.528200 2600 4728 5 chr6A.!!$R4 2128
6 TraesCS6B01G170300 chr6A 116957331 116959862 2531 True 371.666667 647 92.673333 1733 2518 3 chr6A.!!$R5 785
7 TraesCS6B01G170300 chr7D 412684587 412685298 711 False 230.000000 230 73.585000 4016 4728 1 chr7D.!!$F1 712

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
501 524 0.036952 ATCAACCAGGTGCGTCTCTG 60.037 55.000 0.0 0.0 0.00 3.35 F
1026 1087 0.389948 AGACTAAAAGCGGTGGCGAG 60.390 55.000 0.0 0.0 46.35 5.03 F
2135 4565 0.247736 AGATGGTGAGTCGGTGCTTC 59.752 55.000 0.0 0.0 0.00 3.86 F
2654 6753 1.064017 AGTGTTGCTTCCCAGGAAACA 60.064 47.619 0.0 0.0 31.11 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1527 2354 1.337071 GGTGATTGGCATGCAGATCTG 59.663 52.381 21.36 18.84 0.00 2.90 R
2720 6819 1.063488 GGACACAACACACGGCAAC 59.937 57.895 0.00 0.00 0.00 4.17 R
3338 9166 0.476338 TTCACCAGCCTTACTGCCAA 59.524 50.000 0.00 0.00 45.78 4.52 R
4330 11615 0.398522 ATGTCTGGGCGAGGGTGATA 60.399 55.000 0.00 0.00 0.00 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.942090 CACACGTGTGGGCAATTC 57.058 55.556 35.65 0.00 42.10 2.17
24 25 2.330254 CACACGTGTGGGCAATTCT 58.670 52.632 35.65 1.12 42.10 2.40
25 26 1.518325 CACACGTGTGGGCAATTCTA 58.482 50.000 35.65 0.00 42.10 2.10
26 27 1.876799 CACACGTGTGGGCAATTCTAA 59.123 47.619 35.65 0.00 42.10 2.10
27 28 2.487762 CACACGTGTGGGCAATTCTAAT 59.512 45.455 35.65 0.00 42.10 1.73
28 29 3.687212 CACACGTGTGGGCAATTCTAATA 59.313 43.478 35.65 0.00 42.10 0.98
29 30 4.335315 CACACGTGTGGGCAATTCTAATAT 59.665 41.667 35.65 0.00 42.10 1.28
30 31 4.574828 ACACGTGTGGGCAATTCTAATATC 59.425 41.667 22.71 0.00 34.19 1.63
31 32 4.024048 CACGTGTGGGCAATTCTAATATCC 60.024 45.833 7.58 0.00 0.00 2.59
32 33 3.186409 CGTGTGGGCAATTCTAATATCCG 59.814 47.826 0.00 0.00 0.00 4.18
33 34 3.058224 GTGTGGGCAATTCTAATATCCGC 60.058 47.826 0.00 0.00 0.00 5.54
34 35 2.488153 GTGGGCAATTCTAATATCCGCC 59.512 50.000 0.00 0.00 37.33 6.13
36 37 2.790433 GGCAATTCTAATATCCGCCCA 58.210 47.619 0.00 0.00 31.76 5.36
37 38 2.488153 GGCAATTCTAATATCCGCCCAC 59.512 50.000 0.00 0.00 31.76 4.61
38 39 3.146066 GCAATTCTAATATCCGCCCACA 58.854 45.455 0.00 0.00 0.00 4.17
39 40 3.058224 GCAATTCTAATATCCGCCCACAC 60.058 47.826 0.00 0.00 0.00 3.82
40 41 4.133820 CAATTCTAATATCCGCCCACACA 58.866 43.478 0.00 0.00 0.00 3.72
41 42 2.902705 TCTAATATCCGCCCACACAC 57.097 50.000 0.00 0.00 0.00 3.82
42 43 2.112190 TCTAATATCCGCCCACACACA 58.888 47.619 0.00 0.00 0.00 3.72
43 44 2.102420 TCTAATATCCGCCCACACACAG 59.898 50.000 0.00 0.00 0.00 3.66
44 45 0.748005 AATATCCGCCCACACACAGC 60.748 55.000 0.00 0.00 0.00 4.40
45 46 2.608970 ATATCCGCCCACACACAGCC 62.609 60.000 0.00 0.00 0.00 4.85
61 62 4.162690 CCCGTGTAGGCTGCCTCC 62.163 72.222 27.16 15.48 39.21 4.30
62 63 3.077556 CCGTGTAGGCTGCCTCCT 61.078 66.667 27.16 3.92 40.21 3.69
63 64 2.185350 CGTGTAGGCTGCCTCCTG 59.815 66.667 27.16 10.07 37.01 3.86
64 65 2.124942 GTGTAGGCTGCCTCCTGC 60.125 66.667 27.16 14.24 39.02 4.85
65 66 2.284921 TGTAGGCTGCCTCCTGCT 60.285 61.111 27.16 2.17 39.27 4.24
66 67 2.362369 TGTAGGCTGCCTCCTGCTC 61.362 63.158 27.16 10.22 39.27 4.26
67 68 2.039462 TAGGCTGCCTCCTGCTCA 59.961 61.111 27.16 1.99 42.00 4.26
68 69 2.362369 TAGGCTGCCTCCTGCTCAC 61.362 63.158 27.16 0.00 42.00 3.51
69 70 4.025858 GGCTGCCTCCTGCTCACA 62.026 66.667 12.43 0.00 42.00 3.58
70 71 2.745492 GCTGCCTCCTGCTCACAC 60.745 66.667 0.00 0.00 42.00 3.82
71 72 2.046507 CTGCCTCCTGCTCACACC 60.047 66.667 0.00 0.00 42.00 4.16
72 73 2.848679 TGCCTCCTGCTCACACCA 60.849 61.111 0.00 0.00 42.00 4.17
73 74 2.194388 CTGCCTCCTGCTCACACCAT 62.194 60.000 0.00 0.00 42.00 3.55
74 75 0.909133 TGCCTCCTGCTCACACCATA 60.909 55.000 0.00 0.00 42.00 2.74
75 76 0.462759 GCCTCCTGCTCACACCATAC 60.463 60.000 0.00 0.00 36.87 2.39
76 77 0.904649 CCTCCTGCTCACACCATACA 59.095 55.000 0.00 0.00 0.00 2.29
77 78 1.487976 CCTCCTGCTCACACCATACAT 59.512 52.381 0.00 0.00 0.00 2.29
78 79 2.558378 CTCCTGCTCACACCATACATG 58.442 52.381 0.00 0.00 0.00 3.21
79 80 1.908619 TCCTGCTCACACCATACATGT 59.091 47.619 2.69 2.69 0.00 3.21
80 81 2.305635 TCCTGCTCACACCATACATGTT 59.694 45.455 2.30 0.00 0.00 2.71
81 82 3.517500 TCCTGCTCACACCATACATGTTA 59.482 43.478 2.30 0.00 0.00 2.41
82 83 4.164030 TCCTGCTCACACCATACATGTTAT 59.836 41.667 2.30 0.00 0.00 1.89
83 84 4.274214 CCTGCTCACACCATACATGTTATG 59.726 45.833 2.30 6.03 0.00 1.90
84 85 4.842574 TGCTCACACCATACATGTTATGT 58.157 39.130 2.30 0.69 46.92 2.29
85 86 4.635324 TGCTCACACCATACATGTTATGTG 59.365 41.667 18.23 18.23 44.60 3.21
86 87 4.035558 GCTCACACCATACATGTTATGTGG 59.964 45.833 21.42 18.04 44.60 4.17
87 88 4.522114 TCACACCATACATGTTATGTGGG 58.478 43.478 21.42 18.10 44.60 4.61
88 89 3.066621 CACACCATACATGTTATGTGGGC 59.933 47.826 19.19 0.00 44.60 5.36
89 90 2.290367 CACCATACATGTTATGTGGGCG 59.710 50.000 2.30 0.85 44.60 6.13
90 91 1.266718 CCATACATGTTATGTGGGCGC 59.733 52.381 2.30 0.00 44.60 6.53
91 92 1.946081 CATACATGTTATGTGGGCGCA 59.054 47.619 10.83 0.00 44.60 6.09
92 93 2.340210 TACATGTTATGTGGGCGCAT 57.660 45.000 10.83 0.00 44.60 4.73
93 94 0.740149 ACATGTTATGTGGGCGCATG 59.260 50.000 10.83 3.08 43.01 4.06
94 95 0.740149 CATGTTATGTGGGCGCATGT 59.260 50.000 10.83 1.13 34.10 3.21
95 96 1.024271 ATGTTATGTGGGCGCATGTC 58.976 50.000 10.83 0.00 0.00 3.06
96 97 1.351707 GTTATGTGGGCGCATGTCG 59.648 57.895 10.83 5.35 42.12 4.35
97 98 1.087202 GTTATGTGGGCGCATGTCGA 61.087 55.000 10.83 0.00 41.67 4.20
98 99 0.391793 TTATGTGGGCGCATGTCGAA 60.392 50.000 10.83 0.00 41.67 3.71
99 100 0.179059 TATGTGGGCGCATGTCGAAT 60.179 50.000 10.83 0.00 41.67 3.34
100 101 0.179059 ATGTGGGCGCATGTCGAATA 60.179 50.000 10.83 0.00 41.67 1.75
101 102 0.179059 TGTGGGCGCATGTCGAATAT 60.179 50.000 10.83 0.00 41.67 1.28
102 103 1.069358 TGTGGGCGCATGTCGAATATA 59.931 47.619 10.83 0.00 41.67 0.86
103 104 1.459592 GTGGGCGCATGTCGAATATAC 59.540 52.381 10.83 0.00 41.67 1.47
104 105 1.076332 GGGCGCATGTCGAATATACC 58.924 55.000 10.83 0.00 41.67 2.73
105 106 1.606994 GGGCGCATGTCGAATATACCA 60.607 52.381 10.83 0.00 41.67 3.25
106 107 1.459592 GGCGCATGTCGAATATACCAC 59.540 52.381 10.83 0.00 41.67 4.16
107 108 2.131972 GCGCATGTCGAATATACCACA 58.868 47.619 0.30 0.00 41.67 4.17
108 109 2.096909 GCGCATGTCGAATATACCACAC 60.097 50.000 0.30 0.00 41.67 3.82
109 110 2.153057 CGCATGTCGAATATACCACACG 59.847 50.000 3.85 0.00 41.67 4.49
110 111 3.120792 GCATGTCGAATATACCACACGT 58.879 45.455 0.00 0.00 0.00 4.49
111 112 3.060540 GCATGTCGAATATACCACACGTG 60.061 47.826 15.48 15.48 0.00 4.49
112 113 3.853831 TGTCGAATATACCACACGTGT 57.146 42.857 17.22 17.22 0.00 4.49
113 114 3.503891 TGTCGAATATACCACACGTGTG 58.496 45.455 36.13 36.13 45.23 3.82
123 124 0.438445 CACACGTGTGGCAGTTATCG 59.562 55.000 35.65 10.61 42.10 2.92
124 125 0.669318 ACACGTGTGGCAGTTATCGG 60.669 55.000 22.71 0.00 34.19 4.18
125 126 1.740296 ACGTGTGGCAGTTATCGGC 60.740 57.895 0.00 0.00 0.00 5.54
126 127 2.798501 CGTGTGGCAGTTATCGGCG 61.799 63.158 0.00 0.00 35.70 6.46
127 128 1.740296 GTGTGGCAGTTATCGGCGT 60.740 57.895 6.85 0.00 35.70 5.68
128 129 1.447140 TGTGGCAGTTATCGGCGTC 60.447 57.895 6.85 0.00 35.70 5.19
129 130 2.171725 GTGGCAGTTATCGGCGTCC 61.172 63.158 6.85 0.00 35.70 4.79
130 131 2.355986 TGGCAGTTATCGGCGTCCT 61.356 57.895 6.85 0.00 35.70 3.85
131 132 1.153429 GGCAGTTATCGGCGTCCTT 60.153 57.895 6.85 0.00 35.70 3.36
132 133 0.743345 GGCAGTTATCGGCGTCCTTT 60.743 55.000 6.85 0.00 35.70 3.11
133 134 1.472026 GGCAGTTATCGGCGTCCTTTA 60.472 52.381 6.85 0.00 35.70 1.85
134 135 2.480845 GCAGTTATCGGCGTCCTTTAT 58.519 47.619 6.85 0.00 0.00 1.40
135 136 2.475487 GCAGTTATCGGCGTCCTTTATC 59.525 50.000 6.85 0.00 0.00 1.75
136 137 3.799232 GCAGTTATCGGCGTCCTTTATCT 60.799 47.826 6.85 0.00 0.00 1.98
137 138 4.369182 CAGTTATCGGCGTCCTTTATCTT 58.631 43.478 6.85 0.00 0.00 2.40
138 139 4.809426 CAGTTATCGGCGTCCTTTATCTTT 59.191 41.667 6.85 0.00 0.00 2.52
139 140 4.809426 AGTTATCGGCGTCCTTTATCTTTG 59.191 41.667 6.85 0.00 0.00 2.77
140 141 2.754946 TCGGCGTCCTTTATCTTTGT 57.245 45.000 6.85 0.00 0.00 2.83
141 142 2.343101 TCGGCGTCCTTTATCTTTGTG 58.657 47.619 6.85 0.00 0.00 3.33
142 143 2.073816 CGGCGTCCTTTATCTTTGTGT 58.926 47.619 0.00 0.00 0.00 3.72
143 144 2.093783 CGGCGTCCTTTATCTTTGTGTC 59.906 50.000 0.00 0.00 0.00 3.67
144 145 3.335579 GGCGTCCTTTATCTTTGTGTCT 58.664 45.455 0.00 0.00 0.00 3.41
145 146 3.125316 GGCGTCCTTTATCTTTGTGTCTG 59.875 47.826 0.00 0.00 0.00 3.51
146 147 3.994392 GCGTCCTTTATCTTTGTGTCTGA 59.006 43.478 0.00 0.00 0.00 3.27
147 148 4.631813 GCGTCCTTTATCTTTGTGTCTGAT 59.368 41.667 0.00 0.00 0.00 2.90
148 149 5.122396 GCGTCCTTTATCTTTGTGTCTGATT 59.878 40.000 0.00 0.00 0.00 2.57
149 150 6.312918 GCGTCCTTTATCTTTGTGTCTGATTA 59.687 38.462 0.00 0.00 0.00 1.75
150 151 7.148474 GCGTCCTTTATCTTTGTGTCTGATTAA 60.148 37.037 0.00 0.00 0.00 1.40
151 152 8.883731 CGTCCTTTATCTTTGTGTCTGATTAAT 58.116 33.333 0.00 0.00 0.00 1.40
153 154 9.958180 TCCTTTATCTTTGTGTCTGATTAATCA 57.042 29.630 17.07 17.07 35.16 2.57
159 160 8.408043 TCTTTGTGTCTGATTAATCAAATGGT 57.592 30.769 18.47 0.00 36.18 3.55
160 161 8.298854 TCTTTGTGTCTGATTAATCAAATGGTG 58.701 33.333 18.47 6.69 36.18 4.17
161 162 7.523293 TTGTGTCTGATTAATCAAATGGTGT 57.477 32.000 18.47 0.00 36.18 4.16
162 163 8.628630 TTGTGTCTGATTAATCAAATGGTGTA 57.371 30.769 18.47 0.00 36.18 2.90
163 164 8.267620 TGTGTCTGATTAATCAAATGGTGTAG 57.732 34.615 18.47 4.68 36.18 2.74
164 165 7.336679 TGTGTCTGATTAATCAAATGGTGTAGG 59.663 37.037 18.47 4.01 36.18 3.18
165 166 7.552687 GTGTCTGATTAATCAAATGGTGTAGGA 59.447 37.037 18.47 6.18 36.18 2.94
166 167 7.770433 TGTCTGATTAATCAAATGGTGTAGGAG 59.230 37.037 18.47 3.36 36.18 3.69
167 168 7.770897 GTCTGATTAATCAAATGGTGTAGGAGT 59.229 37.037 18.47 0.00 36.18 3.85
168 169 8.328758 TCTGATTAATCAAATGGTGTAGGAGTT 58.671 33.333 18.47 0.00 36.18 3.01
169 170 9.613428 CTGATTAATCAAATGGTGTAGGAGTTA 57.387 33.333 18.47 0.00 36.18 2.24
170 171 9.613428 TGATTAATCAAATGGTGTAGGAGTTAG 57.387 33.333 15.82 0.00 33.08 2.34
171 172 9.832445 GATTAATCAAATGGTGTAGGAGTTAGA 57.168 33.333 10.68 0.00 0.00 2.10
173 174 9.613428 TTAATCAAATGGTGTAGGAGTTAGATG 57.387 33.333 0.00 0.00 0.00 2.90
174 175 5.428253 TCAAATGGTGTAGGAGTTAGATGC 58.572 41.667 0.00 0.00 0.00 3.91
175 176 5.045942 TCAAATGGTGTAGGAGTTAGATGCA 60.046 40.000 0.00 0.00 0.00 3.96
176 177 5.435686 AATGGTGTAGGAGTTAGATGCAA 57.564 39.130 0.00 0.00 0.00 4.08
177 178 4.901197 TGGTGTAGGAGTTAGATGCAAA 57.099 40.909 0.00 0.00 0.00 3.68
178 179 5.435686 TGGTGTAGGAGTTAGATGCAAAT 57.564 39.130 0.00 0.00 0.00 2.32
179 180 5.428253 TGGTGTAGGAGTTAGATGCAAATC 58.572 41.667 0.00 0.00 0.00 2.17
180 181 4.816925 GGTGTAGGAGTTAGATGCAAATCC 59.183 45.833 0.00 0.00 41.84 3.01
181 182 4.508124 GTGTAGGAGTTAGATGCAAATCCG 59.492 45.833 0.00 0.00 45.22 4.18
182 183 3.914426 AGGAGTTAGATGCAAATCCGT 57.086 42.857 0.00 0.00 45.22 4.69
183 184 4.222124 AGGAGTTAGATGCAAATCCGTT 57.778 40.909 0.00 0.00 45.22 4.44
184 185 4.589908 AGGAGTTAGATGCAAATCCGTTT 58.410 39.130 0.00 0.00 45.22 3.60
185 186 4.396166 AGGAGTTAGATGCAAATCCGTTTG 59.604 41.667 0.00 0.00 45.22 2.93
186 187 4.156008 GGAGTTAGATGCAAATCCGTTTGT 59.844 41.667 0.00 0.00 45.14 2.83
187 188 5.296813 AGTTAGATGCAAATCCGTTTGTC 57.703 39.130 0.00 0.00 45.14 3.18
188 189 4.156008 AGTTAGATGCAAATCCGTTTGTCC 59.844 41.667 0.00 0.00 45.14 4.02
189 190 2.795329 AGATGCAAATCCGTTTGTCCT 58.205 42.857 0.00 0.00 45.14 3.85
190 191 3.157087 AGATGCAAATCCGTTTGTCCTT 58.843 40.909 0.00 0.00 45.14 3.36
191 192 3.573967 AGATGCAAATCCGTTTGTCCTTT 59.426 39.130 0.00 0.00 45.14 3.11
192 193 4.764823 AGATGCAAATCCGTTTGTCCTTTA 59.235 37.500 0.00 0.00 45.14 1.85
193 194 5.418840 AGATGCAAATCCGTTTGTCCTTTAT 59.581 36.000 0.00 0.00 45.14 1.40
194 195 4.804108 TGCAAATCCGTTTGTCCTTTATG 58.196 39.130 3.23 0.00 45.14 1.90
195 196 4.279671 TGCAAATCCGTTTGTCCTTTATGT 59.720 37.500 3.23 0.00 45.14 2.29
196 197 4.857037 GCAAATCCGTTTGTCCTTTATGTC 59.143 41.667 3.23 0.00 45.14 3.06
197 198 5.399013 CAAATCCGTTTGTCCTTTATGTCC 58.601 41.667 0.00 0.00 39.85 4.02
198 199 3.062122 TCCGTTTGTCCTTTATGTCCC 57.938 47.619 0.00 0.00 0.00 4.46
199 200 1.735571 CCGTTTGTCCTTTATGTCCCG 59.264 52.381 0.00 0.00 0.00 5.14
200 201 2.419667 CGTTTGTCCTTTATGTCCCGT 58.580 47.619 0.00 0.00 0.00 5.28
201 202 2.809696 CGTTTGTCCTTTATGTCCCGTT 59.190 45.455 0.00 0.00 0.00 4.44
202 203 3.364565 CGTTTGTCCTTTATGTCCCGTTG 60.365 47.826 0.00 0.00 0.00 4.10
203 204 3.495434 TTGTCCTTTATGTCCCGTTGT 57.505 42.857 0.00 0.00 0.00 3.32
204 205 4.620589 TTGTCCTTTATGTCCCGTTGTA 57.379 40.909 0.00 0.00 0.00 2.41
205 206 4.620589 TGTCCTTTATGTCCCGTTGTAA 57.379 40.909 0.00 0.00 0.00 2.41
206 207 4.317488 TGTCCTTTATGTCCCGTTGTAAC 58.683 43.478 0.00 0.00 0.00 2.50
207 208 4.202336 TGTCCTTTATGTCCCGTTGTAACA 60.202 41.667 0.00 0.00 0.00 2.41
208 209 4.152938 GTCCTTTATGTCCCGTTGTAACAC 59.847 45.833 0.00 0.00 0.00 3.32
209 210 3.123959 CCTTTATGTCCCGTTGTAACACG 59.876 47.826 0.00 0.00 40.02 4.49
210 211 1.712401 TATGTCCCGTTGTAACACGC 58.288 50.000 0.00 0.00 38.93 5.34
211 212 1.286354 ATGTCCCGTTGTAACACGCG 61.286 55.000 3.53 3.53 38.93 6.01
212 213 3.037249 TCCCGTTGTAACACGCGC 61.037 61.111 5.73 0.00 38.93 6.86
213 214 4.418470 CCCGTTGTAACACGCGCG 62.418 66.667 30.96 30.96 38.93 6.86
214 215 4.418470 CCGTTGTAACACGCGCGG 62.418 66.667 35.22 24.36 38.93 6.46
215 216 3.396502 CGTTGTAACACGCGCGGA 61.397 61.111 35.22 13.50 32.43 5.54
216 217 2.929848 CGTTGTAACACGCGCGGAA 61.930 57.895 35.22 13.28 32.43 4.30
217 218 1.494189 GTTGTAACACGCGCGGAAT 59.506 52.632 35.22 20.83 0.00 3.01
218 219 0.110554 GTTGTAACACGCGCGGAATT 60.111 50.000 35.22 25.09 0.00 2.17
219 220 1.126479 GTTGTAACACGCGCGGAATTA 59.874 47.619 35.22 24.04 0.00 1.40
220 221 0.993532 TGTAACACGCGCGGAATTAG 59.006 50.000 35.22 17.64 0.00 1.73
221 222 0.314818 GTAACACGCGCGGAATTAGC 60.315 55.000 35.22 17.24 0.00 3.09
222 223 0.458889 TAACACGCGCGGAATTAGCT 60.459 50.000 35.22 7.19 0.00 3.32
223 224 0.458889 AACACGCGCGGAATTAGCTA 60.459 50.000 35.22 0.00 0.00 3.32
224 225 0.870307 ACACGCGCGGAATTAGCTAG 60.870 55.000 35.22 11.90 0.00 3.42
225 226 0.870307 CACGCGCGGAATTAGCTAGT 60.870 55.000 35.22 4.80 0.00 2.57
226 227 0.664761 ACGCGCGGAATTAGCTAGTA 59.335 50.000 35.22 0.00 0.00 1.82
227 228 1.328439 CGCGCGGAATTAGCTAGTAG 58.672 55.000 24.84 0.00 0.00 2.57
228 229 1.334779 CGCGCGGAATTAGCTAGTAGT 60.335 52.381 24.84 0.00 0.00 2.73
229 230 2.740452 GCGCGGAATTAGCTAGTAGTT 58.260 47.619 8.83 0.00 0.00 2.24
230 231 3.607775 CGCGCGGAATTAGCTAGTAGTTA 60.608 47.826 24.84 0.00 0.00 2.24
231 232 4.483311 GCGCGGAATTAGCTAGTAGTTAT 58.517 43.478 8.83 0.00 0.00 1.89
232 233 5.634896 GCGCGGAATTAGCTAGTAGTTATA 58.365 41.667 8.83 0.00 0.00 0.98
233 234 6.264088 GCGCGGAATTAGCTAGTAGTTATAT 58.736 40.000 8.83 0.00 0.00 0.86
234 235 6.750963 GCGCGGAATTAGCTAGTAGTTATATT 59.249 38.462 8.83 1.20 0.00 1.28
235 236 7.275123 GCGCGGAATTAGCTAGTAGTTATATTT 59.725 37.037 8.83 0.00 0.00 1.40
236 237 9.778993 CGCGGAATTAGCTAGTAGTTATATTTA 57.221 33.333 0.00 0.00 0.00 1.40
304 305 2.021355 GACTCTTCCCTACGAGTCGA 57.979 55.000 21.50 1.82 44.45 4.20
369 380 1.202580 AGTCTGGCTGATATTCCGCAC 60.203 52.381 0.00 0.00 0.00 5.34
411 425 1.827969 AGATAGAACGCCAGTTGCTCT 59.172 47.619 0.00 0.00 41.34 4.09
415 429 3.059352 AGAACGCCAGTTGCTCTAAAT 57.941 42.857 0.00 0.00 41.34 1.40
501 524 0.036952 ATCAACCAGGTGCGTCTCTG 60.037 55.000 0.00 0.00 0.00 3.35
511 534 2.707849 GCGTCTCTGCCGTTCCCTA 61.708 63.158 0.00 0.00 0.00 3.53
522 545 1.848886 CGTTCCCTACCCTGCCCTTT 61.849 60.000 0.00 0.00 0.00 3.11
528 551 1.306312 TACCCTGCCCTTTCCGCTA 60.306 57.895 0.00 0.00 0.00 4.26
619 678 3.380471 AAATCATCGGATGTTTGGGGA 57.620 42.857 17.01 0.00 32.92 4.81
623 682 1.956477 CATCGGATGTTTGGGGATTCC 59.044 52.381 9.85 0.00 0.00 3.01
635 694 1.065491 GGGGATTCCACCAAAATTGCC 60.065 52.381 4.80 0.00 35.00 4.52
819 879 2.978156 TTCAGATTCAGGTGGCCTTT 57.022 45.000 3.32 0.00 0.00 3.11
820 880 2.978156 TCAGATTCAGGTGGCCTTTT 57.022 45.000 3.32 0.00 0.00 2.27
821 881 2.795329 TCAGATTCAGGTGGCCTTTTC 58.205 47.619 3.32 0.00 0.00 2.29
842 902 3.991972 CCCCCGGTTACTTCCAAAT 57.008 52.632 0.00 0.00 0.00 2.32
847 907 4.082081 CCCCCGGTTACTTCCAAATAAAAC 60.082 45.833 0.00 0.00 0.00 2.43
902 963 9.490379 GTTCATATATCGTCCCTTAGATTGTTT 57.510 33.333 0.00 0.00 0.00 2.83
965 1026 6.166982 GTTGATAACTCTACAGTTTGCCTCT 58.833 40.000 0.00 0.00 40.16 3.69
1014 1075 9.209175 GTCTAAGAAAAGATGAGCAAGACTAAA 57.791 33.333 0.00 0.00 0.00 1.85
1017 1078 6.907741 AGAAAAGATGAGCAAGACTAAAAGC 58.092 36.000 0.00 0.00 0.00 3.51
1026 1087 0.389948 AGACTAAAAGCGGTGGCGAG 60.390 55.000 0.00 0.00 46.35 5.03
1128 1189 4.012374 TGCTGCCTCTTCCTCTTTTATTG 58.988 43.478 0.00 0.00 0.00 1.90
1160 1437 9.815936 CCTTTGAATTGATTGATTTGTAAAAGC 57.184 29.630 0.00 0.00 0.00 3.51
1184 1461 7.013846 AGCTTTACCACATTGCTTTACTGTTAA 59.986 33.333 0.00 0.00 0.00 2.01
1203 1480 6.022315 TGTTAATGAATCCACATTTTCCCCT 58.978 36.000 0.00 0.00 40.36 4.79
1205 1482 5.425196 AATGAATCCACATTTTCCCCTTG 57.575 39.130 0.00 0.00 37.20 3.61
1259 2007 4.062991 GAGAAGGTGCGGAAAAGTAAGAA 58.937 43.478 0.00 0.00 0.00 2.52
1271 2019 6.932960 CGGAAAAGTAAGAAGGGAACTAAGAA 59.067 38.462 0.00 0.00 42.68 2.52
1297 2045 0.851495 CGATGATCTCGCAAGCAGAC 59.149 55.000 0.00 0.00 41.14 3.51
1341 2089 4.679373 TCTCCCAAGATCACATAAGAGC 57.321 45.455 0.00 0.00 0.00 4.09
1454 2231 5.310331 TCAAGAGATAACATATGGGCCATGA 59.690 40.000 29.14 11.31 0.00 3.07
1527 2354 1.630878 ACATTTCAGTCTCCCCTGTCC 59.369 52.381 0.00 0.00 34.02 4.02
1655 2533 2.130395 CGTAGTATGCCACATCAGCAG 58.870 52.381 0.00 0.00 44.90 4.24
1717 2611 2.536066 GGGCAAAATACCTGGAACCTT 58.464 47.619 0.00 0.00 0.00 3.50
1748 2642 3.715315 GGTAAGGGGTGAAGTAGGCTAAT 59.285 47.826 0.00 0.00 0.00 1.73
1797 4120 9.765295 TTTCTAGGTGAGGAGTACTTAATAACT 57.235 33.333 0.00 0.00 0.00 2.24
1799 4122 9.844257 TCTAGGTGAGGAGTACTTAATAACTAC 57.156 37.037 0.00 0.00 0.00 2.73
1800 4123 9.624373 CTAGGTGAGGAGTACTTAATAACTACA 57.376 37.037 0.00 0.00 0.00 2.74
1801 4124 8.522542 AGGTGAGGAGTACTTAATAACTACAG 57.477 38.462 0.00 0.00 0.00 2.74
1881 4204 5.596361 ACACAATGTTCTTGGGTATGTTCAA 59.404 36.000 0.00 0.00 33.69 2.69
1990 4314 3.617540 TGTGAATTTACTTGGCACGTG 57.382 42.857 12.28 12.28 32.39 4.49
2004 4434 6.990349 ACTTGGCACGTGTATTAGCTAATATT 59.010 34.615 25.15 10.54 31.50 1.28
2008 4438 7.042321 TGGCACGTGTATTAGCTAATATTTCAC 60.042 37.037 25.15 24.08 31.50 3.18
2135 4565 0.247736 AGATGGTGAGTCGGTGCTTC 59.752 55.000 0.00 0.00 0.00 3.86
2144 4574 5.585047 GGTGAGTCGGTGCTTCTAAATTTAT 59.415 40.000 0.00 0.00 0.00 1.40
2145 4575 6.093633 GGTGAGTCGGTGCTTCTAAATTTATT 59.906 38.462 0.00 0.00 0.00 1.40
2146 4576 7.279313 GGTGAGTCGGTGCTTCTAAATTTATTA 59.721 37.037 0.00 0.00 0.00 0.98
2147 4577 8.328864 GTGAGTCGGTGCTTCTAAATTTATTAG 58.671 37.037 0.00 0.95 0.00 1.73
2236 4666 9.423061 GATGACATGCTTTTGGTTAATACTTTT 57.577 29.630 0.00 0.00 0.00 2.27
2251 4681 8.847196 GTTAATACTTTTGAGGAGACTTTTGGT 58.153 33.333 0.00 0.00 44.43 3.67
2396 4829 6.209192 TCATGTTTGTATTTGAGCCATCACTT 59.791 34.615 0.00 0.00 34.35 3.16
2486 6582 4.049546 TGGAACGGATCTACGGTTATTG 57.950 45.455 0.00 0.00 41.03 1.90
2524 6620 3.007290 TGGTCAGGAGTTCAAGTGATGAG 59.993 47.826 0.00 0.00 39.77 2.90
2654 6753 1.064017 AGTGTTGCTTCCCAGGAAACA 60.064 47.619 0.00 0.00 31.11 2.83
2686 6785 1.935300 GCACGCTACAGCACTACAGTT 60.935 52.381 1.61 0.00 42.21 3.16
2720 6819 2.018544 CTCTAGTCAGCGTCGAGGG 58.981 63.158 7.31 0.00 0.00 4.30
2730 6829 3.041940 GTCGAGGGTTGCCGTGTG 61.042 66.667 0.00 0.00 0.00 3.82
2731 6830 3.542676 TCGAGGGTTGCCGTGTGT 61.543 61.111 0.00 0.00 0.00 3.72
2733 6832 2.892334 CGAGGGTTGCCGTGTGTTG 61.892 63.158 0.00 0.00 0.00 3.33
2829 6928 2.202919 CTGATGGCCGTGATCGCA 60.203 61.111 0.00 0.00 35.54 5.10
2916 7015 1.135315 GGTGCGTATGCTGTTGCTG 59.865 57.895 8.69 0.00 43.34 4.41
2999 7301 3.912496 CATGTCCTCCATGTCACCTTA 57.088 47.619 0.00 0.00 44.96 2.69
3011 7313 3.094572 TGTCACCTTACTAGGCTGGTAC 58.905 50.000 10.53 1.31 46.22 3.34
3108 8800 2.610833 CGTGATGTGGGATCATGTTCAG 59.389 50.000 6.14 0.00 32.07 3.02
3127 8819 5.125100 TCAGTGCATTCTGGAACATTTTC 57.875 39.130 4.64 0.00 38.20 2.29
3195 8887 5.643777 AGGTGCTTGTCATACATGTTAAGTC 59.356 40.000 2.30 0.00 0.00 3.01
3248 9073 4.081807 ACTTACTTACCTGGGTCGAATGTC 60.082 45.833 0.00 0.00 0.00 3.06
3262 9087 5.179555 GGTCGAATGTCTTAAGAAGCTTTGT 59.820 40.000 6.78 0.00 0.00 2.83
3300 9125 4.874396 TCAGTGAAGCATCATGAATGAGTC 59.126 41.667 0.00 1.46 40.64 3.36
3302 9127 4.876679 AGTGAAGCATCATGAATGAGTCAG 59.123 41.667 0.00 0.00 40.43 3.51
3310 9135 6.349115 GCATCATGAATGAGTCAGTTCTGTTT 60.349 38.462 0.00 0.00 40.43 2.83
3338 9166 7.696992 AATCTGTTTATCGGTATGTTTTGGT 57.303 32.000 0.00 0.00 0.00 3.67
3365 9193 0.555769 AAGGCTGGTGAAGTTGGGAA 59.444 50.000 0.00 0.00 0.00 3.97
3455 9284 7.342769 TGTTATCCGATACAGTTGACACTAT 57.657 36.000 0.00 0.00 0.00 2.12
3732 10988 1.133915 CCCCGCAGTAACCCATACATT 60.134 52.381 0.00 0.00 36.94 2.71
3826 11082 3.211045 GTTGGCTAGGTTTCAGTTCACA 58.789 45.455 0.00 0.00 0.00 3.58
3856 11112 1.238439 TGTTGCTGCTAGTCTTTGCC 58.762 50.000 0.00 0.00 0.00 4.52
3895 11151 1.003580 TGTGCTTGGTCTCTTGGGATC 59.996 52.381 0.00 0.00 0.00 3.36
3910 11166 0.390340 GGATCGCAGAGTGAGTGCAA 60.390 55.000 0.00 0.00 43.63 4.08
4083 11343 2.563702 GGTAGAAACCGACACAAACCA 58.436 47.619 0.00 0.00 35.62 3.67
4114 11375 2.029964 GACCCAAACGGACGAGCA 59.970 61.111 0.00 0.00 34.64 4.26
4126 11390 1.067212 GGACGAGCATCTATTGTCCGT 59.933 52.381 0.00 0.00 39.67 4.69
4142 11406 2.642700 GTGCGCAACCCATTTCGT 59.357 55.556 14.00 0.00 0.00 3.85
4158 11422 0.539438 TCGTGCCCAAATTTGAGCCT 60.539 50.000 20.37 0.00 30.03 4.58
4173 11437 2.126228 CCTAGTTTGCGTCGGCGA 60.126 61.111 16.53 4.99 44.10 5.54
4174 11438 2.158959 CCTAGTTTGCGTCGGCGAG 61.159 63.158 16.53 5.86 44.10 5.03
4175 11439 2.126228 TAGTTTGCGTCGGCGAGG 60.126 61.111 23.88 23.88 44.10 4.63
4176 11440 2.537792 CTAGTTTGCGTCGGCGAGGA 62.538 60.000 31.06 14.35 44.10 3.71
4177 11441 2.807631 TAGTTTGCGTCGGCGAGGAC 62.808 60.000 31.06 20.19 44.10 3.85
4178 11442 4.287781 TTTGCGTCGGCGAGGACA 62.288 61.111 31.06 23.66 44.10 4.02
4179 11443 3.583276 TTTGCGTCGGCGAGGACAT 62.583 57.895 31.06 0.00 44.10 3.06
4180 11444 4.794439 TGCGTCGGCGAGGACATG 62.794 66.667 31.06 7.08 44.10 3.21
4182 11446 3.822192 CGTCGGCGAGGACATGGA 61.822 66.667 23.88 0.00 41.33 3.41
4183 11447 2.105128 GTCGGCGAGGACATGGAG 59.895 66.667 11.20 0.00 36.91 3.86
4184 11448 2.362503 TCGGCGAGGACATGGAGT 60.363 61.111 4.99 0.00 0.00 3.85
4340 11625 0.469331 TACCCAGGCTATCACCCTCG 60.469 60.000 0.00 0.00 0.00 4.63
4347 11632 1.742768 CTATCACCCTCGCCCAGAC 59.257 63.158 0.00 0.00 0.00 3.51
4364 11656 1.637553 AGACATCTTCCCCAGCAACAT 59.362 47.619 0.00 0.00 0.00 2.71
4366 11658 1.076024 ACATCTTCCCCAGCAACATGT 59.924 47.619 0.00 0.00 0.00 3.21
4371 11663 2.693762 CCCCAGCAACATGTCGCAG 61.694 63.158 12.09 2.36 0.00 5.18
4376 11668 2.360350 CAACATGTCGCAGCCCCT 60.360 61.111 0.00 0.00 0.00 4.79
4442 11735 4.697756 CACCCGCCACGACCACAT 62.698 66.667 0.00 0.00 0.00 3.21
4455 11749 2.187946 CACATCAGCCCCGTCCTC 59.812 66.667 0.00 0.00 0.00 3.71
4456 11750 3.083997 ACATCAGCCCCGTCCTCC 61.084 66.667 0.00 0.00 0.00 4.30
4457 11751 3.083349 CATCAGCCCCGTCCTCCA 61.083 66.667 0.00 0.00 0.00 3.86
4522 11827 4.015406 TCGCCTCCACGCCAACAT 62.015 61.111 0.00 0.00 0.00 2.71
4534 11839 1.378911 CCAACATGCCTGCTGCCTA 60.379 57.895 0.00 0.00 40.16 3.93
4547 11852 2.043248 GCCTAGACTGGGGGACGA 60.043 66.667 7.02 0.00 0.00 4.20
4609 11914 1.952635 GTGTTCGACGTTTCGCCCT 60.953 57.895 0.00 0.00 45.46 5.19
4610 11915 1.952133 TGTTCGACGTTTCGCCCTG 60.952 57.895 0.00 0.00 45.46 4.45
4640 11945 9.391006 GTACAAATGGATAGTGGAAATGAGTAA 57.609 33.333 0.00 0.00 0.00 2.24
4642 11947 9.479549 ACAAATGGATAGTGGAAATGAGTAATT 57.520 29.630 0.00 0.00 0.00 1.40
4674 11979 4.503741 ACAACTTCATTTGTGATTCGGG 57.496 40.909 0.00 0.00 38.31 5.14
4681 11986 0.724549 TTTGTGATTCGGGCGATTCG 59.275 50.000 0.62 0.62 0.00 3.34
4683 11988 0.390603 TGTGATTCGGGCGATTCGTT 60.391 50.000 8.03 0.00 0.00 3.85
4706 12011 0.249657 GGACGATGAGGAGATGGTGC 60.250 60.000 0.00 0.00 0.00 5.01
4728 12033 1.308069 GCTGCATTGGTCGTCCATGT 61.308 55.000 1.21 0.00 43.91 3.21
4729 12034 0.729116 CTGCATTGGTCGTCCATGTC 59.271 55.000 1.21 0.00 43.91 3.06
4730 12035 0.324614 TGCATTGGTCGTCCATGTCT 59.675 50.000 1.21 0.00 43.91 3.41
4731 12036 1.009829 GCATTGGTCGTCCATGTCTC 58.990 55.000 1.21 0.00 43.91 3.36
4732 12037 1.656652 CATTGGTCGTCCATGTCTCC 58.343 55.000 1.21 0.00 43.91 3.71
4733 12038 1.066215 CATTGGTCGTCCATGTCTCCA 60.066 52.381 1.21 0.00 43.91 3.86
4734 12039 1.275666 TTGGTCGTCCATGTCTCCAT 58.724 50.000 1.21 0.00 43.91 3.41
4735 12040 0.536724 TGGTCGTCCATGTCTCCATG 59.463 55.000 0.00 0.00 46.65 3.66
4749 12054 1.945394 CTCCATGACCACATTGCTAGC 59.055 52.381 8.10 8.10 34.15 3.42
4750 12055 1.561076 TCCATGACCACATTGCTAGCT 59.439 47.619 17.23 0.00 34.15 3.32
4751 12056 2.771372 TCCATGACCACATTGCTAGCTA 59.229 45.455 17.23 9.14 34.15 3.32
4752 12057 3.136763 CCATGACCACATTGCTAGCTAG 58.863 50.000 16.84 16.84 34.15 3.42
4771 12076 1.883021 GCAGCGGCCAATGTTTAGT 59.117 52.632 2.24 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.518325 TAGAATTGCCCACACGTGTG 58.482 50.000 36.13 36.13 45.23 3.82
7 8 2.264005 TTAGAATTGCCCACACGTGT 57.736 45.000 17.22 17.22 0.00 4.49
8 9 4.024048 GGATATTAGAATTGCCCACACGTG 60.024 45.833 15.48 15.48 0.00 4.49
9 10 4.134563 GGATATTAGAATTGCCCACACGT 58.865 43.478 0.00 0.00 0.00 4.49
10 11 3.186409 CGGATATTAGAATTGCCCACACG 59.814 47.826 0.00 0.00 0.00 4.49
11 12 3.058224 GCGGATATTAGAATTGCCCACAC 60.058 47.826 0.00 0.00 0.00 3.82
12 13 3.146066 GCGGATATTAGAATTGCCCACA 58.854 45.455 0.00 0.00 0.00 4.17
13 14 2.488153 GGCGGATATTAGAATTGCCCAC 59.512 50.000 0.00 0.00 35.01 4.61
14 15 2.790433 GGCGGATATTAGAATTGCCCA 58.210 47.619 0.00 0.00 35.01 5.36
16 17 2.488153 GTGGGCGGATATTAGAATTGCC 59.512 50.000 0.00 0.00 40.25 4.52
17 18 3.058224 GTGTGGGCGGATATTAGAATTGC 60.058 47.826 0.00 0.00 0.00 3.56
18 19 4.024048 GTGTGTGGGCGGATATTAGAATTG 60.024 45.833 0.00 0.00 0.00 2.32
19 20 4.134563 GTGTGTGGGCGGATATTAGAATT 58.865 43.478 0.00 0.00 0.00 2.17
20 21 3.135712 TGTGTGTGGGCGGATATTAGAAT 59.864 43.478 0.00 0.00 0.00 2.40
21 22 2.502130 TGTGTGTGGGCGGATATTAGAA 59.498 45.455 0.00 0.00 0.00 2.10
22 23 2.102420 CTGTGTGTGGGCGGATATTAGA 59.898 50.000 0.00 0.00 0.00 2.10
23 24 2.483876 CTGTGTGTGGGCGGATATTAG 58.516 52.381 0.00 0.00 0.00 1.73
24 25 1.474320 GCTGTGTGTGGGCGGATATTA 60.474 52.381 0.00 0.00 0.00 0.98
25 26 0.748005 GCTGTGTGTGGGCGGATATT 60.748 55.000 0.00 0.00 0.00 1.28
26 27 1.153168 GCTGTGTGTGGGCGGATAT 60.153 57.895 0.00 0.00 0.00 1.63
27 28 2.267642 GCTGTGTGTGGGCGGATA 59.732 61.111 0.00 0.00 0.00 2.59
28 29 4.722700 GGCTGTGTGTGGGCGGAT 62.723 66.667 0.00 0.00 0.00 4.18
44 45 4.162690 GGAGGCAGCCTACACGGG 62.163 72.222 20.17 0.00 33.84 5.28
45 46 3.077556 AGGAGGCAGCCTACACGG 61.078 66.667 26.78 0.00 36.80 4.94
46 47 2.185350 CAGGAGGCAGCCTACACG 59.815 66.667 26.78 12.63 36.80 4.49
47 48 2.124942 GCAGGAGGCAGCCTACAC 60.125 66.667 26.78 13.72 43.97 2.90
56 57 0.462759 GTATGGTGTGAGCAGGAGGC 60.463 60.000 0.00 0.00 45.30 4.70
57 58 0.904649 TGTATGGTGTGAGCAGGAGG 59.095 55.000 0.00 0.00 0.00 4.30
58 59 2.093288 ACATGTATGGTGTGAGCAGGAG 60.093 50.000 0.00 0.00 0.00 3.69
59 60 1.908619 ACATGTATGGTGTGAGCAGGA 59.091 47.619 0.00 0.00 0.00 3.86
60 61 2.408271 ACATGTATGGTGTGAGCAGG 57.592 50.000 0.00 0.00 0.00 4.85
61 62 4.877823 ACATAACATGTATGGTGTGAGCAG 59.122 41.667 12.69 0.00 42.78 4.24
62 63 4.635324 CACATAACATGTATGGTGTGAGCA 59.365 41.667 19.67 0.00 42.70 4.26
63 64 4.035558 CCACATAACATGTATGGTGTGAGC 59.964 45.833 23.28 0.00 42.70 4.26
64 65 4.576053 CCCACATAACATGTATGGTGTGAG 59.424 45.833 23.28 13.46 42.70 3.51
65 66 4.522114 CCCACATAACATGTATGGTGTGA 58.478 43.478 23.28 0.00 42.70 3.58
66 67 3.066621 GCCCACATAACATGTATGGTGTG 59.933 47.826 18.39 18.39 42.70 3.82
67 68 3.287222 GCCCACATAACATGTATGGTGT 58.713 45.455 17.27 9.90 42.70 4.16
68 69 2.290367 CGCCCACATAACATGTATGGTG 59.710 50.000 0.00 7.70 42.70 4.17
69 70 2.571212 CGCCCACATAACATGTATGGT 58.429 47.619 0.00 0.00 42.70 3.55
70 71 1.266718 GCGCCCACATAACATGTATGG 59.733 52.381 0.00 5.09 42.70 2.74
71 72 1.946081 TGCGCCCACATAACATGTATG 59.054 47.619 4.18 6.29 42.70 2.39
72 73 2.340210 TGCGCCCACATAACATGTAT 57.660 45.000 4.18 0.00 42.70 2.29
73 74 1.946081 CATGCGCCCACATAACATGTA 59.054 47.619 4.18 0.00 42.70 2.29
74 75 0.740149 CATGCGCCCACATAACATGT 59.260 50.000 4.18 0.00 46.22 3.21
75 76 0.740149 ACATGCGCCCACATAACATG 59.260 50.000 4.18 0.27 42.92 3.21
76 77 1.024271 GACATGCGCCCACATAACAT 58.976 50.000 4.18 0.00 0.00 2.71
77 78 1.365368 CGACATGCGCCCACATAACA 61.365 55.000 4.18 0.00 0.00 2.41
78 79 1.087202 TCGACATGCGCCCACATAAC 61.087 55.000 4.18 0.00 40.61 1.89
79 80 0.391793 TTCGACATGCGCCCACATAA 60.392 50.000 4.18 0.00 40.61 1.90
80 81 0.179059 ATTCGACATGCGCCCACATA 60.179 50.000 4.18 0.00 40.61 2.29
81 82 0.179059 TATTCGACATGCGCCCACAT 60.179 50.000 4.18 0.00 40.61 3.21
82 83 0.179059 ATATTCGACATGCGCCCACA 60.179 50.000 4.18 0.00 40.61 4.17
83 84 1.459592 GTATATTCGACATGCGCCCAC 59.540 52.381 4.18 0.00 40.61 4.61
84 85 1.606994 GGTATATTCGACATGCGCCCA 60.607 52.381 4.18 0.00 40.61 5.36
85 86 1.076332 GGTATATTCGACATGCGCCC 58.924 55.000 4.18 0.00 40.61 6.13
86 87 1.459592 GTGGTATATTCGACATGCGCC 59.540 52.381 4.18 0.00 40.61 6.53
87 88 2.096909 GTGTGGTATATTCGACATGCGC 60.097 50.000 0.00 0.00 40.61 6.09
88 89 2.153057 CGTGTGGTATATTCGACATGCG 59.847 50.000 4.26 0.00 42.69 4.73
89 90 3.060540 CACGTGTGGTATATTCGACATGC 60.061 47.826 7.58 0.00 36.83 4.06
90 91 4.026886 CACACGTGTGGTATATTCGACATG 60.027 45.833 35.65 12.91 42.10 3.21
91 92 4.109766 CACACGTGTGGTATATTCGACAT 58.890 43.478 35.65 0.00 42.10 3.06
92 93 3.503891 CACACGTGTGGTATATTCGACA 58.496 45.455 35.65 0.00 42.10 4.35
104 105 0.438445 CGATAACTGCCACACGTGTG 59.562 55.000 36.13 36.13 45.23 3.82
105 106 0.669318 CCGATAACTGCCACACGTGT 60.669 55.000 17.22 17.22 0.00 4.49
106 107 1.966493 GCCGATAACTGCCACACGTG 61.966 60.000 15.48 15.48 0.00 4.49
107 108 1.740296 GCCGATAACTGCCACACGT 60.740 57.895 0.00 0.00 0.00 4.49
108 109 2.798501 CGCCGATAACTGCCACACG 61.799 63.158 0.00 0.00 0.00 4.49
109 110 1.693083 GACGCCGATAACTGCCACAC 61.693 60.000 0.00 0.00 0.00 3.82
110 111 1.447140 GACGCCGATAACTGCCACA 60.447 57.895 0.00 0.00 0.00 4.17
111 112 2.171725 GGACGCCGATAACTGCCAC 61.172 63.158 0.00 0.00 0.00 5.01
112 113 1.895020 AAGGACGCCGATAACTGCCA 61.895 55.000 0.00 0.00 0.00 4.92
113 114 0.743345 AAAGGACGCCGATAACTGCC 60.743 55.000 0.00 0.00 0.00 4.85
114 115 1.930567 TAAAGGACGCCGATAACTGC 58.069 50.000 0.00 0.00 0.00 4.40
115 116 3.978687 AGATAAAGGACGCCGATAACTG 58.021 45.455 0.00 0.00 0.00 3.16
116 117 4.667519 AAGATAAAGGACGCCGATAACT 57.332 40.909 0.00 0.00 0.00 2.24
117 118 4.569564 ACAAAGATAAAGGACGCCGATAAC 59.430 41.667 0.00 0.00 0.00 1.89
118 119 4.569162 CACAAAGATAAAGGACGCCGATAA 59.431 41.667 0.00 0.00 0.00 1.75
119 120 4.116961 CACAAAGATAAAGGACGCCGATA 58.883 43.478 0.00 0.00 0.00 2.92
120 121 2.936498 CACAAAGATAAAGGACGCCGAT 59.064 45.455 0.00 0.00 0.00 4.18
121 122 2.289195 ACACAAAGATAAAGGACGCCGA 60.289 45.455 0.00 0.00 0.00 5.54
122 123 2.073816 ACACAAAGATAAAGGACGCCG 58.926 47.619 0.00 0.00 0.00 6.46
123 124 3.125316 CAGACACAAAGATAAAGGACGCC 59.875 47.826 0.00 0.00 0.00 5.68
124 125 3.994392 TCAGACACAAAGATAAAGGACGC 59.006 43.478 0.00 0.00 0.00 5.19
125 126 6.727824 AATCAGACACAAAGATAAAGGACG 57.272 37.500 0.00 0.00 0.00 4.79
127 128 9.958180 TGATTAATCAGACACAAAGATAAAGGA 57.042 29.630 14.23 0.00 32.11 3.36
133 134 9.028284 ACCATTTGATTAATCAGACACAAAGAT 57.972 29.630 17.28 0.00 38.19 2.40
134 135 8.298854 CACCATTTGATTAATCAGACACAAAGA 58.701 33.333 17.28 0.00 38.19 2.52
135 136 8.084073 ACACCATTTGATTAATCAGACACAAAG 58.916 33.333 17.28 6.65 38.19 2.77
136 137 7.950512 ACACCATTTGATTAATCAGACACAAA 58.049 30.769 17.28 8.99 38.19 2.83
137 138 7.523293 ACACCATTTGATTAATCAGACACAA 57.477 32.000 17.28 9.65 38.19 3.33
138 139 7.336679 CCTACACCATTTGATTAATCAGACACA 59.663 37.037 17.28 0.60 38.19 3.72
139 140 7.552687 TCCTACACCATTTGATTAATCAGACAC 59.447 37.037 17.28 0.00 38.19 3.67
140 141 7.629157 TCCTACACCATTTGATTAATCAGACA 58.371 34.615 17.28 7.27 38.19 3.41
141 142 7.770897 ACTCCTACACCATTTGATTAATCAGAC 59.229 37.037 17.28 0.00 38.19 3.51
142 143 7.861629 ACTCCTACACCATTTGATTAATCAGA 58.138 34.615 17.28 14.05 38.19 3.27
143 144 8.511604 AACTCCTACACCATTTGATTAATCAG 57.488 34.615 17.28 9.17 38.19 2.90
144 145 9.613428 CTAACTCCTACACCATTTGATTAATCA 57.387 33.333 14.23 14.23 34.44 2.57
145 146 9.832445 TCTAACTCCTACACCATTTGATTAATC 57.168 33.333 8.60 8.60 0.00 1.75
147 148 9.613428 CATCTAACTCCTACACCATTTGATTAA 57.387 33.333 0.00 0.00 0.00 1.40
148 149 7.715249 GCATCTAACTCCTACACCATTTGATTA 59.285 37.037 0.00 0.00 0.00 1.75
149 150 6.543831 GCATCTAACTCCTACACCATTTGATT 59.456 38.462 0.00 0.00 0.00 2.57
150 151 6.058183 GCATCTAACTCCTACACCATTTGAT 58.942 40.000 0.00 0.00 0.00 2.57
151 152 5.045942 TGCATCTAACTCCTACACCATTTGA 60.046 40.000 0.00 0.00 0.00 2.69
152 153 5.185454 TGCATCTAACTCCTACACCATTTG 58.815 41.667 0.00 0.00 0.00 2.32
153 154 5.435686 TGCATCTAACTCCTACACCATTT 57.564 39.130 0.00 0.00 0.00 2.32
154 155 5.435686 TTGCATCTAACTCCTACACCATT 57.564 39.130 0.00 0.00 0.00 3.16
155 156 5.435686 TTTGCATCTAACTCCTACACCAT 57.564 39.130 0.00 0.00 0.00 3.55
156 157 4.901197 TTTGCATCTAACTCCTACACCA 57.099 40.909 0.00 0.00 0.00 4.17
157 158 4.816925 GGATTTGCATCTAACTCCTACACC 59.183 45.833 0.00 0.00 0.00 4.16
158 159 4.508124 CGGATTTGCATCTAACTCCTACAC 59.492 45.833 0.00 0.00 29.79 2.90
159 160 4.161565 ACGGATTTGCATCTAACTCCTACA 59.838 41.667 0.00 0.00 29.79 2.74
160 161 4.694339 ACGGATTTGCATCTAACTCCTAC 58.306 43.478 0.00 0.00 29.79 3.18
161 162 5.353394 AACGGATTTGCATCTAACTCCTA 57.647 39.130 0.00 0.00 29.79 2.94
162 163 3.914426 ACGGATTTGCATCTAACTCCT 57.086 42.857 0.00 0.00 29.79 3.69
163 164 4.662145 CAAACGGATTTGCATCTAACTCC 58.338 43.478 0.00 0.00 38.92 3.85
175 176 4.461431 GGGACATAAAGGACAAACGGATTT 59.539 41.667 0.00 0.00 0.00 2.17
176 177 4.014406 GGGACATAAAGGACAAACGGATT 58.986 43.478 0.00 0.00 0.00 3.01
177 178 3.617284 GGGACATAAAGGACAAACGGAT 58.383 45.455 0.00 0.00 0.00 4.18
178 179 2.613474 CGGGACATAAAGGACAAACGGA 60.613 50.000 0.00 0.00 0.00 4.69
179 180 1.735571 CGGGACATAAAGGACAAACGG 59.264 52.381 0.00 0.00 0.00 4.44
180 181 2.419667 ACGGGACATAAAGGACAAACG 58.580 47.619 0.00 0.00 0.00 3.60
181 182 3.566742 ACAACGGGACATAAAGGACAAAC 59.433 43.478 0.00 0.00 0.00 2.93
182 183 3.822940 ACAACGGGACATAAAGGACAAA 58.177 40.909 0.00 0.00 0.00 2.83
183 184 3.495434 ACAACGGGACATAAAGGACAA 57.505 42.857 0.00 0.00 0.00 3.18
184 185 4.202336 TGTTACAACGGGACATAAAGGACA 60.202 41.667 0.00 0.00 0.00 4.02
185 186 4.152938 GTGTTACAACGGGACATAAAGGAC 59.847 45.833 0.00 0.00 0.00 3.85
186 187 4.317488 GTGTTACAACGGGACATAAAGGA 58.683 43.478 0.00 0.00 0.00 3.36
187 188 3.123959 CGTGTTACAACGGGACATAAAGG 59.876 47.826 0.00 0.00 39.89 3.11
188 189 3.423907 GCGTGTTACAACGGGACATAAAG 60.424 47.826 8.74 0.00 43.75 1.85
189 190 2.479656 GCGTGTTACAACGGGACATAAA 59.520 45.455 8.74 0.00 43.75 1.40
190 191 2.067766 GCGTGTTACAACGGGACATAA 58.932 47.619 8.74 0.00 43.75 1.90
191 192 1.712401 GCGTGTTACAACGGGACATA 58.288 50.000 8.74 0.00 43.75 2.29
192 193 2.535588 GCGTGTTACAACGGGACAT 58.464 52.632 8.74 0.00 43.75 3.06
193 194 4.030821 GCGTGTTACAACGGGACA 57.969 55.556 8.74 0.00 43.75 4.02
197 198 4.418470 CCGCGCGTGTTACAACGG 62.418 66.667 29.95 11.05 43.75 4.44
198 199 2.217964 ATTCCGCGCGTGTTACAACG 62.218 55.000 29.95 9.95 46.30 4.10
199 200 0.110554 AATTCCGCGCGTGTTACAAC 60.111 50.000 29.95 0.00 0.00 3.32
200 201 1.390803 CTAATTCCGCGCGTGTTACAA 59.609 47.619 29.95 11.17 0.00 2.41
201 202 0.993532 CTAATTCCGCGCGTGTTACA 59.006 50.000 29.95 8.04 0.00 2.41
202 203 0.314818 GCTAATTCCGCGCGTGTTAC 60.315 55.000 29.95 13.66 0.00 2.50
203 204 0.458889 AGCTAATTCCGCGCGTGTTA 60.459 50.000 29.95 20.92 0.00 2.41
204 205 0.458889 TAGCTAATTCCGCGCGTGTT 60.459 50.000 29.95 20.92 0.00 3.32
205 206 0.870307 CTAGCTAATTCCGCGCGTGT 60.870 55.000 29.95 11.22 0.00 4.49
206 207 0.870307 ACTAGCTAATTCCGCGCGTG 60.870 55.000 29.95 19.95 0.00 5.34
207 208 0.664761 TACTAGCTAATTCCGCGCGT 59.335 50.000 29.95 12.94 0.00 6.01
208 209 1.328439 CTACTAGCTAATTCCGCGCG 58.672 55.000 25.67 25.67 0.00 6.86
209 210 2.418983 ACTACTAGCTAATTCCGCGC 57.581 50.000 0.00 0.00 0.00 6.86
210 211 8.684973 AAATATAACTACTAGCTAATTCCGCG 57.315 34.615 0.00 0.00 0.00 6.46
260 261 9.528018 TCAGCTCGTTTTCTTTTATTTTTCATT 57.472 25.926 0.00 0.00 0.00 2.57
281 282 1.004979 ACTCGTAGGGAAGAGTCAGCT 59.995 52.381 0.00 0.00 43.52 4.24
304 305 4.172232 TCGGGATAGGGGGCAGCT 62.172 66.667 0.00 0.00 0.00 4.24
411 425 6.038936 GCCCAGCCGTTCTATCTTTTTATTTA 59.961 38.462 0.00 0.00 0.00 1.40
415 429 3.275999 GCCCAGCCGTTCTATCTTTTTA 58.724 45.455 0.00 0.00 0.00 1.52
501 524 4.484872 GGCAGGGTAGGGAACGGC 62.485 72.222 0.00 0.00 0.00 5.68
511 534 2.001269 ATAGCGGAAAGGGCAGGGT 61.001 57.895 0.00 0.00 0.00 4.34
522 545 1.366111 GCTCGGTTTTGCATAGCGGA 61.366 55.000 17.29 10.11 37.14 5.54
528 551 1.112315 TTGGGTGCTCGGTTTTGCAT 61.112 50.000 0.00 0.00 41.45 3.96
601 660 3.490348 GAATCCCCAAACATCCGATGAT 58.510 45.455 15.47 0.00 0.00 2.45
619 678 2.453983 CACGGCAATTTTGGTGGAAT 57.546 45.000 0.00 0.00 0.00 3.01
623 682 0.390860 TTCCCACGGCAATTTTGGTG 59.609 50.000 0.00 0.00 0.00 4.17
635 694 1.449601 CCCATCGAAGGTTCCCACG 60.450 63.158 5.87 0.00 0.00 4.94
746 806 3.876914 CACAGCTACACAAGGTTCAGAAA 59.123 43.478 0.00 0.00 32.16 2.52
784 844 7.825681 TGAATCTGAATTTTCATTAGCCGAAA 58.174 30.769 0.00 0.00 36.46 3.46
785 845 7.389803 TGAATCTGAATTTTCATTAGCCGAA 57.610 32.000 0.00 0.00 36.46 4.30
842 902 9.884465 CAAACACCAACTTTGAATTTTGTTTTA 57.116 25.926 0.00 0.00 34.53 1.52
847 907 5.163673 CCCCAAACACCAACTTTGAATTTTG 60.164 40.000 0.00 0.00 31.32 2.44
902 963 4.888326 ATGCTGTAAAATTTTCAGGCCA 57.112 36.364 21.44 15.70 0.00 5.36
1014 1075 4.514577 CGATCCTCGCCACCGCTT 62.515 66.667 0.00 0.00 31.14 4.68
1026 1087 0.741221 GTGACCTTCCTGTGCGATCC 60.741 60.000 0.00 0.00 0.00 3.36
1128 1189 2.566724 TCAATCAATTCAAAGGGGTGCC 59.433 45.455 0.00 0.00 0.00 5.01
1160 1437 9.128107 CATTAACAGTAAAGCAATGTGGTAAAG 57.872 33.333 0.00 0.00 0.00 1.85
1184 1461 4.428570 ACAAGGGGAAAATGTGGATTCAT 58.571 39.130 0.00 0.00 0.00 2.57
1297 2045 0.760567 TCACCATCCCTCTCATCCGG 60.761 60.000 0.00 0.00 0.00 5.14
1341 2089 4.565166 TCTTTACCATCGCGAACTATTGTG 59.435 41.667 15.24 4.49 0.00 3.33
1454 2231 6.665248 CCCATTTTCACCCTCTCTCTAAAAAT 59.335 38.462 0.00 0.00 0.00 1.82
1527 2354 1.337071 GGTGATTGGCATGCAGATCTG 59.663 52.381 21.36 18.84 0.00 2.90
1630 2508 2.159156 TGATGTGGCATACTACGTGGAC 60.159 50.000 5.70 0.00 0.00 4.02
1680 2574 2.096248 GCCCCGATGTATTGAAAACCA 58.904 47.619 0.00 0.00 0.00 3.67
1717 2611 4.661709 ACTTCACCCCTTACCTAGAAAACA 59.338 41.667 0.00 0.00 0.00 2.83
1729 2623 2.092375 GCATTAGCCTACTTCACCCCTT 60.092 50.000 0.00 0.00 33.58 3.95
1767 2661 9.765295 ATTAAGTACTCCTCACCTAGAAAAGTA 57.235 33.333 0.00 0.00 0.00 2.24
1798 4121 9.998106 ATGTGTTCTAAACTAGTTGAATACTGT 57.002 29.630 23.69 15.55 37.73 3.55
1851 4174 3.317993 ACCCAAGAACATTGTGTAACTGC 59.682 43.478 0.00 0.00 38.04 4.40
1881 4204 6.363065 TCATAGTATTAGAAGTCGGTCCACT 58.637 40.000 0.00 0.00 0.00 4.00
2236 4666 2.503765 TGTGTCACCAAAAGTCTCCTCA 59.496 45.455 0.00 0.00 0.00 3.86
2277 4707 6.015434 GGAAGAGGCCTTTTTACTGAATTCAA 60.015 38.462 6.77 0.00 31.62 2.69
2396 4829 7.441157 TGTGTGTGATTTTTGGTTTGTTAACAA 59.559 29.630 17.01 17.01 35.92 2.83
2470 6566 4.036567 TGTCACAATAACCGTAGATCCG 57.963 45.455 0.00 0.00 0.00 4.18
2486 6582 2.456119 CCAAGCTCGCCGATGTCAC 61.456 63.158 0.00 0.00 0.00 3.67
2524 6620 6.865205 CCCTCAAGTTTTCATCAATCTTGTTC 59.135 38.462 0.00 0.00 40.77 3.18
2654 6753 3.508840 GCGTGCCCTTTATGCGCT 61.509 61.111 9.73 0.00 44.00 5.92
2686 6785 5.008911 TGACTAGAGCAACGTTGTAGTGTAA 59.991 40.000 25.84 13.64 0.00 2.41
2720 6819 1.063488 GGACACAACACACGGCAAC 59.937 57.895 0.00 0.00 0.00 4.17
2730 6829 3.485877 GCTGAATAATCGCTGGACACAAC 60.486 47.826 0.00 0.00 0.00 3.32
2731 6830 2.677836 GCTGAATAATCGCTGGACACAA 59.322 45.455 0.00 0.00 0.00 3.33
2733 6832 1.258982 CGCTGAATAATCGCTGGACAC 59.741 52.381 0.00 0.00 0.00 3.67
2829 6928 1.638529 CTGTCCAGGTGACCTCTTCT 58.361 55.000 0.00 0.00 43.78 2.85
2916 7015 1.351350 ACTTCCACCTAGGCAGGAAAC 59.649 52.381 27.33 0.00 45.91 2.78
2999 7301 1.076192 CCTCCCGTACCAGCCTAGT 60.076 63.158 0.00 0.00 0.00 2.57
3108 8800 3.670055 CACGAAAATGTTCCAGAATGCAC 59.330 43.478 0.00 0.00 31.97 4.57
3127 8819 2.009774 CCAGGCATACCTCTTTTCACG 58.990 52.381 0.00 0.00 46.34 4.35
3195 8887 6.381481 ACACCCTTAAAACCTCGTTAAAAG 57.619 37.500 0.00 0.00 0.00 2.27
3248 9073 5.460091 GCTTGGTTCAACAAAGCTTCTTAAG 59.540 40.000 20.84 0.00 36.31 1.85
3300 9125 9.318041 CGATAAACAGATTTACAAACAGAACTG 57.682 33.333 0.00 0.00 33.09 3.16
3302 9127 8.287503 ACCGATAAACAGATTTACAAACAGAAC 58.712 33.333 0.00 0.00 33.09 3.01
3338 9166 0.476338 TTCACCAGCCTTACTGCCAA 59.524 50.000 0.00 0.00 45.78 4.52
3365 9193 1.701847 AGAAAGCCTCACCACTGTCAT 59.298 47.619 0.00 0.00 0.00 3.06
3455 9284 8.579850 AAGAGCACATTGAAACCATATCTTAA 57.420 30.769 0.00 0.00 0.00 1.85
3512 9341 1.689813 CGGGCCACCTGTATGTATGTA 59.310 52.381 4.39 0.00 33.28 2.29
3732 10988 5.014860 TCTCTCCCCATCTATGTATCCGTAA 59.985 44.000 0.00 0.00 0.00 3.18
3856 11112 4.383649 GCACAACAGCTACATGAAACATTG 59.616 41.667 0.00 0.00 0.00 2.82
3895 11151 0.882042 AAGGTTGCACTCACTCTGCG 60.882 55.000 0.00 0.00 37.46 5.18
3910 11166 1.346395 TCGCCATCTGTTACACAAGGT 59.654 47.619 0.00 0.00 0.00 3.50
3928 11187 6.019801 CGAATTCAGTATAAACCAAGTCCTCG 60.020 42.308 6.22 0.00 0.00 4.63
3980 11239 1.661480 GCATGTGCCTGCTTGTTCA 59.339 52.632 0.00 0.00 39.12 3.18
4064 11324 2.033492 CGTGGTTTGTGTCGGTTTCTAC 60.033 50.000 0.00 0.00 0.00 2.59
4075 11335 3.959975 CGTGGGCCGTGGTTTGTG 61.960 66.667 0.00 0.00 0.00 3.33
4114 11375 1.006832 GTTGCGCACGGACAATAGAT 58.993 50.000 11.12 0.00 0.00 1.98
4126 11390 2.642129 CACGAAATGGGTTGCGCA 59.358 55.556 5.66 5.66 0.00 6.09
4158 11422 2.126228 CCTCGCCGACGCAAACTA 60.126 61.111 0.00 0.00 39.84 2.24
4173 11437 1.975327 CACGTCCACTCCATGTCCT 59.025 57.895 0.00 0.00 0.00 3.85
4174 11438 1.741770 GCACGTCCACTCCATGTCC 60.742 63.158 0.00 0.00 0.00 4.02
4175 11439 2.094659 CGCACGTCCACTCCATGTC 61.095 63.158 0.00 0.00 0.00 3.06
4176 11440 2.048222 CGCACGTCCACTCCATGT 60.048 61.111 0.00 0.00 0.00 3.21
4177 11441 3.490759 GCGCACGTCCACTCCATG 61.491 66.667 0.30 0.00 0.00 3.66
4178 11442 3.529341 TTGCGCACGTCCACTCCAT 62.529 57.895 11.12 0.00 0.00 3.41
4179 11443 4.228567 TTGCGCACGTCCACTCCA 62.229 61.111 11.12 0.00 0.00 3.86
4180 11444 3.712881 GTTGCGCACGTCCACTCC 61.713 66.667 11.12 0.00 0.00 3.85
4181 11445 4.059459 CGTTGCGCACGTCCACTC 62.059 66.667 11.12 0.00 44.49 3.51
4330 11615 0.398522 ATGTCTGGGCGAGGGTGATA 60.399 55.000 0.00 0.00 0.00 2.15
4340 11625 1.225704 CTGGGGAAGATGTCTGGGC 59.774 63.158 0.00 0.00 0.00 5.36
4347 11632 1.747355 GACATGTTGCTGGGGAAGATG 59.253 52.381 0.00 7.20 31.91 2.90
4395 11687 2.519063 CTGCACAGGCCACCAACA 60.519 61.111 5.01 0.00 40.13 3.33
4441 11734 3.083997 GTGGAGGACGGGGCTGAT 61.084 66.667 0.00 0.00 0.00 2.90
4547 11852 4.421479 CCGACGAAGAGCACCGCT 62.421 66.667 0.00 0.00 43.88 5.52
4609 11914 6.381498 TTCCACTATCCATTTGTACCTTCA 57.619 37.500 0.00 0.00 0.00 3.02
4610 11915 7.556275 TCATTTCCACTATCCATTTGTACCTTC 59.444 37.037 0.00 0.00 0.00 3.46
4674 11979 4.717917 CGTCCAACAACGAATCGC 57.282 55.556 1.15 0.00 45.37 4.58
4681 11986 2.743636 TCTCCTCATCGTCCAACAAC 57.256 50.000 0.00 0.00 0.00 3.32
4683 11988 1.482182 CCATCTCCTCATCGTCCAACA 59.518 52.381 0.00 0.00 0.00 3.33
4706 12011 1.236616 TGGACGACCAATGCAGCAAG 61.237 55.000 3.49 0.00 43.91 4.01
4728 12033 2.420547 GCTAGCAATGTGGTCATGGAGA 60.421 50.000 10.63 0.00 34.19 3.71
4729 12034 1.945394 GCTAGCAATGTGGTCATGGAG 59.055 52.381 10.63 0.00 34.19 3.86
4730 12035 1.561076 AGCTAGCAATGTGGTCATGGA 59.439 47.619 18.83 0.00 34.19 3.41
4731 12036 2.048444 AGCTAGCAATGTGGTCATGG 57.952 50.000 18.83 0.00 34.19 3.66
4732 12037 3.136763 CCTAGCTAGCAATGTGGTCATG 58.863 50.000 18.83 0.00 34.19 3.07
4733 12038 2.486191 GCCTAGCTAGCAATGTGGTCAT 60.486 50.000 18.83 0.00 35.59 3.06
4734 12039 1.134401 GCCTAGCTAGCAATGTGGTCA 60.134 52.381 18.83 0.00 0.00 4.02
4735 12040 1.134401 TGCCTAGCTAGCAATGTGGTC 60.134 52.381 18.83 7.87 37.28 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.