Multiple sequence alignment - TraesCS6B01G170100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G170100 chr6B 100.000 3892 0 0 1 3892 182578796 182582687 0.000000e+00 7188.0
1 TraesCS6B01G170100 chr6B 100.000 2143 0 0 4075 6217 182582870 182585012 0.000000e+00 3958.0
2 TraesCS6B01G170100 chr6B 73.300 1015 234 30 2193 3182 713974184 713973182 7.720000e-89 339.0
3 TraesCS6B01G170100 chr6A 93.935 3479 159 23 412 3861 116906645 116910100 0.000000e+00 5208.0
4 TraesCS6B01G170100 chr6A 96.725 1496 34 6 4075 5570 116910109 116911589 0.000000e+00 2477.0
5 TraesCS6B01G170100 chr6A 94.974 378 19 0 5840 6217 116911792 116912169 1.490000e-165 593.0
6 TraesCS6B01G170100 chr6A 72.472 999 237 29 2192 3165 613991310 613990325 2.840000e-73 287.0
7 TraesCS6B01G170100 chr6D 91.124 3515 220 33 412 3892 97907900 97911356 0.000000e+00 4678.0
8 TraesCS6B01G170100 chr6D 97.103 1726 38 4 4075 5795 97911382 97913100 0.000000e+00 2900.0
9 TraesCS6B01G170100 chr6D 100.000 30 0 0 567 596 12492389 12492360 8.710000e-04 56.5
10 TraesCS6B01G170100 chr6D 100.000 30 0 0 567 596 104972713 104972684 8.710000e-04 56.5
11 TraesCS6B01G170100 chr1D 91.163 3225 199 30 415 3605 212373169 212369997 0.000000e+00 4298.0
12 TraesCS6B01G170100 chr1D 96.774 31 1 0 567 597 81722407 81722437 1.100000e-02 52.8
13 TraesCS6B01G170100 chr4D 100.000 30 0 0 567 596 420141168 420141139 8.710000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G170100 chr6B 182578796 182585012 6216 False 5573.000000 7188 100.000000 1 6217 2 chr6B.!!$F1 6216
1 TraesCS6B01G170100 chr6B 713973182 713974184 1002 True 339.000000 339 73.300000 2193 3182 1 chr6B.!!$R1 989
2 TraesCS6B01G170100 chr6A 116906645 116912169 5524 False 2759.333333 5208 95.211333 412 6217 3 chr6A.!!$F1 5805
3 TraesCS6B01G170100 chr6A 613990325 613991310 985 True 287.000000 287 72.472000 2192 3165 1 chr6A.!!$R1 973
4 TraesCS6B01G170100 chr6D 97907900 97913100 5200 False 3789.000000 4678 94.113500 412 5795 2 chr6D.!!$F1 5383
5 TraesCS6B01G170100 chr1D 212369997 212373169 3172 True 4298.000000 4298 91.163000 415 3605 1 chr1D.!!$R1 3190

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
125 126 0.034337 GTGGACCAAGCTAACACCGA 59.966 55.0 0.00 0.0 0.00 4.69 F
126 127 0.034337 TGGACCAAGCTAACACCGAC 59.966 55.0 0.00 0.0 0.00 4.79 F
1410 1453 0.034574 TGGTGGTGATTGGGGAATCG 60.035 55.0 0.00 0.0 31.94 3.34 F
1924 1967 0.736053 TCTTCAACGTTTTTGCGCCT 59.264 45.0 4.18 0.0 34.88 5.52 F
3510 3578 0.034337 TCTTTCCTTTGACCCGTCGG 59.966 55.0 3.60 3.6 0.00 4.79 F
4913 4981 0.695347 CCAGCTCTGGTTCTTCCCTT 59.305 55.0 7.75 0.0 45.53 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1379 1422 0.319900 CACCACCAGGAGTTCAGTCG 60.320 60.000 0.00 0.0 38.69 4.18 R
1603 1646 0.405585 ACCCTGCAACAAGTATGGCT 59.594 50.000 0.00 0.0 0.00 4.75 R
3210 3271 1.001378 CCAAAAGTTGCGAAGGTCCAG 60.001 52.381 0.00 0.0 0.00 3.86 R
3800 3868 1.539388 CATGCGCAACCCTTAGTTCAA 59.461 47.619 17.11 0.0 36.18 2.69 R
5019 5087 0.101939 GCAGGTACCACCGCTACTAC 59.898 60.000 15.94 0.0 44.90 2.73 R
6068 6141 0.318762 ACCAACGAGGAAGAGCTGAC 59.681 55.000 0.00 0.0 41.22 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.203640 AGACCTGTCACCGCTCCA 60.204 61.111 0.00 0.00 0.00 3.86
18 19 2.048127 GACCTGTCACCGCTCCAC 60.048 66.667 0.00 0.00 0.00 4.02
19 20 3.591254 GACCTGTCACCGCTCCACC 62.591 68.421 0.00 0.00 0.00 4.61
20 21 4.742201 CCTGTCACCGCTCCACCG 62.742 72.222 0.00 0.00 0.00 4.94
46 47 2.031919 TGGACGTGGCACCACATC 59.968 61.111 19.38 13.66 46.47 3.06
47 48 3.118454 GGACGTGGCACCACATCG 61.118 66.667 19.38 8.47 46.47 3.84
48 49 3.788766 GACGTGGCACCACATCGC 61.789 66.667 19.38 2.08 46.47 4.58
55 56 3.195002 CACCACATCGCCGCGAAT 61.195 61.111 21.02 8.39 39.99 3.34
56 57 3.195002 ACCACATCGCCGCGAATG 61.195 61.111 21.02 19.63 39.99 2.67
57 58 3.940640 CCACATCGCCGCGAATGG 61.941 66.667 26.15 26.15 39.99 3.16
58 59 3.940640 CACATCGCCGCGAATGGG 61.941 66.667 21.02 15.17 39.99 4.00
65 66 3.513225 CCGCGAATGGGCAAATCT 58.487 55.556 8.23 0.00 0.00 2.40
66 67 1.809207 CCGCGAATGGGCAAATCTT 59.191 52.632 8.23 0.00 0.00 2.40
67 68 0.248621 CCGCGAATGGGCAAATCTTC 60.249 55.000 8.23 0.00 0.00 2.87
68 69 0.248621 CGCGAATGGGCAAATCTTCC 60.249 55.000 0.00 0.00 0.00 3.46
69 70 0.817013 GCGAATGGGCAAATCTTCCA 59.183 50.000 0.00 0.00 34.79 3.53
70 71 1.469767 GCGAATGGGCAAATCTTCCAC 60.470 52.381 0.00 0.00 32.90 4.02
71 72 1.134946 CGAATGGGCAAATCTTCCACC 59.865 52.381 0.00 0.00 32.90 4.61
72 73 1.134946 GAATGGGCAAATCTTCCACCG 59.865 52.381 0.00 0.00 32.90 4.94
73 74 1.322538 ATGGGCAAATCTTCCACCGC 61.323 55.000 0.00 0.00 32.90 5.68
74 75 1.976474 GGGCAAATCTTCCACCGCA 60.976 57.895 0.00 0.00 0.00 5.69
75 76 1.212751 GGCAAATCTTCCACCGCAC 59.787 57.895 0.00 0.00 0.00 5.34
76 77 1.212751 GCAAATCTTCCACCGCACC 59.787 57.895 0.00 0.00 0.00 5.01
77 78 1.523154 GCAAATCTTCCACCGCACCA 61.523 55.000 0.00 0.00 0.00 4.17
78 79 0.240945 CAAATCTTCCACCGCACCAC 59.759 55.000 0.00 0.00 0.00 4.16
79 80 0.179004 AAATCTTCCACCGCACCACA 60.179 50.000 0.00 0.00 0.00 4.17
80 81 0.179004 AATCTTCCACCGCACCACAA 60.179 50.000 0.00 0.00 0.00 3.33
81 82 0.889186 ATCTTCCACCGCACCACAAC 60.889 55.000 0.00 0.00 0.00 3.32
82 83 2.517402 TTCCACCGCACCACAACC 60.517 61.111 0.00 0.00 0.00 3.77
83 84 4.920112 TCCACCGCACCACAACCG 62.920 66.667 0.00 0.00 0.00 4.44
93 94 2.034066 CACAACCGGTGGGCAGAT 59.966 61.111 15.05 0.00 44.04 2.90
94 95 2.040544 CACAACCGGTGGGCAGATC 61.041 63.158 15.05 0.00 44.04 2.75
95 96 2.224159 ACAACCGGTGGGCAGATCT 61.224 57.895 15.05 0.00 36.48 2.75
96 97 1.746615 CAACCGGTGGGCAGATCTG 60.747 63.158 18.84 18.84 36.48 2.90
106 107 2.124983 CAGATCTGCCACCGTGGG 60.125 66.667 19.41 3.60 38.19 4.61
107 108 2.607750 AGATCTGCCACCGTGGGT 60.608 61.111 19.41 0.00 38.19 4.51
122 123 2.942641 GGGTGGACCAAGCTAACAC 58.057 57.895 0.00 0.00 39.85 3.32
123 124 2.942641 GGTGGACCAAGCTAACACC 58.057 57.895 0.00 8.73 43.98 4.16
124 125 0.953960 GGTGGACCAAGCTAACACCG 60.954 60.000 0.00 0.00 41.73 4.94
125 126 0.034337 GTGGACCAAGCTAACACCGA 59.966 55.000 0.00 0.00 0.00 4.69
126 127 0.034337 TGGACCAAGCTAACACCGAC 59.966 55.000 0.00 0.00 0.00 4.79
127 128 1.012486 GGACCAAGCTAACACCGACG 61.012 60.000 0.00 0.00 0.00 5.12
128 129 0.319297 GACCAAGCTAACACCGACGT 60.319 55.000 0.00 0.00 0.00 4.34
129 130 0.961019 ACCAAGCTAACACCGACGTA 59.039 50.000 0.00 0.00 0.00 3.57
130 131 1.336240 ACCAAGCTAACACCGACGTAC 60.336 52.381 0.00 0.00 0.00 3.67
131 132 1.336148 CCAAGCTAACACCGACGTACA 60.336 52.381 0.00 0.00 0.00 2.90
132 133 2.602878 CAAGCTAACACCGACGTACAT 58.397 47.619 0.00 0.00 0.00 2.29
133 134 2.273370 AGCTAACACCGACGTACATG 57.727 50.000 0.00 0.00 0.00 3.21
134 135 1.135199 AGCTAACACCGACGTACATGG 60.135 52.381 0.00 0.00 0.00 3.66
135 136 1.403249 GCTAACACCGACGTACATGGT 60.403 52.381 0.00 0.00 36.10 3.55
136 137 2.523015 CTAACACCGACGTACATGGTC 58.477 52.381 0.00 0.00 32.48 4.02
143 144 0.979811 GACGTACATGGTCGACAACG 59.020 55.000 18.91 18.65 41.26 4.10
144 145 0.387622 ACGTACATGGTCGACAACGG 60.388 55.000 18.91 4.82 40.21 4.44
145 146 1.680105 CGTACATGGTCGACAACGGC 61.680 60.000 18.91 0.00 43.86 5.68
169 170 2.522060 CGAAGAAGCGCACAAGAGT 58.478 52.632 11.47 0.00 0.00 3.24
170 171 0.861837 CGAAGAAGCGCACAAGAGTT 59.138 50.000 11.47 0.00 0.00 3.01
171 172 1.397693 CGAAGAAGCGCACAAGAGTTG 60.398 52.381 11.47 0.00 0.00 3.16
172 173 0.947244 AAGAAGCGCACAAGAGTTGG 59.053 50.000 11.47 0.00 34.12 3.77
173 174 1.081840 GAAGCGCACAAGAGTTGGC 60.082 57.895 11.47 0.00 34.12 4.52
174 175 2.770587 GAAGCGCACAAGAGTTGGCG 62.771 60.000 11.47 14.30 46.08 5.69
175 176 4.389576 GCGCACAAGAGTTGGCGG 62.390 66.667 17.92 6.31 44.65 6.13
176 177 2.972505 CGCACAAGAGTTGGCGGT 60.973 61.111 12.04 0.00 42.51 5.68
177 178 2.946762 GCACAAGAGTTGGCGGTC 59.053 61.111 0.00 0.00 34.12 4.79
178 179 1.891919 GCACAAGAGTTGGCGGTCA 60.892 57.895 0.00 0.00 34.12 4.02
179 180 1.941812 CACAAGAGTTGGCGGTCAC 59.058 57.895 0.00 0.00 34.12 3.67
180 181 1.227853 ACAAGAGTTGGCGGTCACC 60.228 57.895 0.00 0.00 34.12 4.02
181 182 1.227823 CAAGAGTTGGCGGTCACCA 60.228 57.895 0.00 0.00 38.16 4.17
182 183 1.227853 AAGAGTTGGCGGTCACCAC 60.228 57.895 0.00 0.00 40.19 4.16
183 184 2.989055 AAGAGTTGGCGGTCACCACG 62.989 60.000 0.00 0.00 40.19 4.94
192 193 4.595538 GTCACCACGCCACGACCA 62.596 66.667 0.00 0.00 0.00 4.02
193 194 3.851128 TCACCACGCCACGACCAA 61.851 61.111 0.00 0.00 0.00 3.67
194 195 2.668212 CACCACGCCACGACCAAT 60.668 61.111 0.00 0.00 0.00 3.16
195 196 2.668212 ACCACGCCACGACCAATG 60.668 61.111 0.00 0.00 0.00 2.82
196 197 3.430862 CCACGCCACGACCAATGG 61.431 66.667 0.00 0.00 40.50 3.16
197 198 3.430862 CACGCCACGACCAATGGG 61.431 66.667 3.55 0.00 37.73 4.00
200 201 3.443045 GCCACGACCAATGGGCAG 61.443 66.667 5.73 0.00 45.70 4.85
201 202 2.350895 CCACGACCAATGGGCAGA 59.649 61.111 5.73 0.00 37.90 4.26
202 203 1.077501 CCACGACCAATGGGCAGAT 60.078 57.895 5.73 0.00 37.90 2.90
203 204 0.180171 CCACGACCAATGGGCAGATA 59.820 55.000 5.73 0.00 37.90 1.98
204 205 1.299541 CACGACCAATGGGCAGATAC 58.700 55.000 5.73 0.00 37.90 2.24
205 206 1.134401 CACGACCAATGGGCAGATACT 60.134 52.381 5.73 0.00 37.90 2.12
206 207 1.139058 ACGACCAATGGGCAGATACTC 59.861 52.381 5.73 0.00 37.90 2.59
207 208 1.414181 CGACCAATGGGCAGATACTCT 59.586 52.381 5.73 0.00 37.90 3.24
208 209 2.804572 CGACCAATGGGCAGATACTCTG 60.805 54.545 5.73 0.00 46.90 3.35
209 210 2.435805 GACCAATGGGCAGATACTCTGA 59.564 50.000 0.00 0.00 45.88 3.27
214 215 1.068250 GGCAGATACTCTGACCCGC 59.932 63.158 8.29 0.00 46.78 6.13
215 216 1.676678 GGCAGATACTCTGACCCGCA 61.677 60.000 8.29 0.00 46.78 5.69
216 217 3.554663 GGCAGATACTCTGACCCGCAG 62.555 61.905 8.29 0.00 46.78 5.18
224 225 4.713946 TGACCCGCAGACAATTCC 57.286 55.556 0.00 0.00 0.00 3.01
225 226 2.066340 TGACCCGCAGACAATTCCT 58.934 52.632 0.00 0.00 0.00 3.36
226 227 1.271856 TGACCCGCAGACAATTCCTA 58.728 50.000 0.00 0.00 0.00 2.94
227 228 1.207089 TGACCCGCAGACAATTCCTAG 59.793 52.381 0.00 0.00 0.00 3.02
228 229 1.480954 GACCCGCAGACAATTCCTAGA 59.519 52.381 0.00 0.00 0.00 2.43
229 230 1.482593 ACCCGCAGACAATTCCTAGAG 59.517 52.381 0.00 0.00 0.00 2.43
230 231 1.576356 CCGCAGACAATTCCTAGAGC 58.424 55.000 0.00 0.00 0.00 4.09
231 232 1.576356 CGCAGACAATTCCTAGAGCC 58.424 55.000 0.00 0.00 0.00 4.70
232 233 1.134699 CGCAGACAATTCCTAGAGCCA 60.135 52.381 0.00 0.00 0.00 4.75
233 234 2.677902 CGCAGACAATTCCTAGAGCCAA 60.678 50.000 0.00 0.00 0.00 4.52
234 235 3.347216 GCAGACAATTCCTAGAGCCAAA 58.653 45.455 0.00 0.00 0.00 3.28
235 236 3.127721 GCAGACAATTCCTAGAGCCAAAC 59.872 47.826 0.00 0.00 0.00 2.93
236 237 3.691609 CAGACAATTCCTAGAGCCAAACC 59.308 47.826 0.00 0.00 0.00 3.27
237 238 2.678336 GACAATTCCTAGAGCCAAACCG 59.322 50.000 0.00 0.00 0.00 4.44
238 239 2.039879 ACAATTCCTAGAGCCAAACCGT 59.960 45.455 0.00 0.00 0.00 4.83
239 240 2.678336 CAATTCCTAGAGCCAAACCGTC 59.322 50.000 0.00 0.00 0.00 4.79
240 241 1.640917 TTCCTAGAGCCAAACCGTCT 58.359 50.000 0.00 0.00 0.00 4.18
241 242 2.519771 TCCTAGAGCCAAACCGTCTA 57.480 50.000 0.00 0.00 0.00 2.59
242 243 2.097825 TCCTAGAGCCAAACCGTCTAC 58.902 52.381 0.00 0.00 0.00 2.59
243 244 1.202268 CCTAGAGCCAAACCGTCTACG 60.202 57.143 0.00 0.00 39.44 3.51
244 245 1.471684 CTAGAGCCAAACCGTCTACGT 59.528 52.381 1.41 0.00 37.74 3.57
245 246 0.677842 AGAGCCAAACCGTCTACGTT 59.322 50.000 0.00 0.00 37.74 3.99
246 247 0.788391 GAGCCAAACCGTCTACGTTG 59.212 55.000 0.00 0.00 37.74 4.10
247 248 0.601841 AGCCAAACCGTCTACGTTGG 60.602 55.000 16.37 16.37 43.83 3.77
248 249 0.881600 GCCAAACCGTCTACGTTGGT 60.882 55.000 19.72 0.00 43.29 3.67
250 251 2.753296 CCAAACCGTCTACGTTGGTTA 58.247 47.619 13.75 0.00 44.93 2.85
251 252 2.733026 CCAAACCGTCTACGTTGGTTAG 59.267 50.000 13.75 6.15 44.93 2.34
252 253 3.552684 CCAAACCGTCTACGTTGGTTAGA 60.553 47.826 13.75 0.00 44.93 2.10
253 254 3.565905 AACCGTCTACGTTGGTTAGAG 57.434 47.619 11.10 0.00 43.91 2.43
254 255 1.815003 ACCGTCTACGTTGGTTAGAGG 59.185 52.381 0.00 0.00 37.74 3.69
255 256 2.086869 CCGTCTACGTTGGTTAGAGGA 58.913 52.381 0.00 0.00 37.74 3.71
256 257 2.686915 CCGTCTACGTTGGTTAGAGGAT 59.313 50.000 0.00 0.00 37.74 3.24
257 258 3.129988 CCGTCTACGTTGGTTAGAGGATT 59.870 47.826 0.00 0.00 37.74 3.01
258 259 4.381292 CCGTCTACGTTGGTTAGAGGATTT 60.381 45.833 0.00 0.00 37.74 2.17
259 260 5.163622 CCGTCTACGTTGGTTAGAGGATTTA 60.164 44.000 0.00 0.00 37.74 1.40
260 261 5.970023 CGTCTACGTTGGTTAGAGGATTTAG 59.030 44.000 0.00 0.00 34.11 1.85
261 262 6.183360 CGTCTACGTTGGTTAGAGGATTTAGA 60.183 42.308 0.00 0.00 34.11 2.10
262 263 6.971756 GTCTACGTTGGTTAGAGGATTTAGAC 59.028 42.308 0.00 0.00 0.00 2.59
263 264 4.741342 ACGTTGGTTAGAGGATTTAGACG 58.259 43.478 0.00 0.00 0.00 4.18
264 265 4.110482 CGTTGGTTAGAGGATTTAGACGG 58.890 47.826 0.00 0.00 0.00 4.79
265 266 4.381292 CGTTGGTTAGAGGATTTAGACGGT 60.381 45.833 0.00 0.00 0.00 4.83
266 267 5.485620 GTTGGTTAGAGGATTTAGACGGTT 58.514 41.667 0.00 0.00 0.00 4.44
267 268 5.750352 TGGTTAGAGGATTTAGACGGTTT 57.250 39.130 0.00 0.00 0.00 3.27
268 269 5.727434 TGGTTAGAGGATTTAGACGGTTTC 58.273 41.667 0.00 0.00 0.00 2.78
269 270 4.802563 GGTTAGAGGATTTAGACGGTTTCG 59.197 45.833 0.00 0.00 43.02 3.46
279 280 4.792125 CGGTTTCGTCGAGCAAAC 57.208 55.556 9.69 9.69 0.00 2.93
280 281 1.203313 CGGTTTCGTCGAGCAAACC 59.797 57.895 21.14 21.14 45.62 3.27
281 282 1.203313 GGTTTCGTCGAGCAAACCG 59.797 57.895 18.08 3.81 41.61 4.44
282 283 1.438222 GTTTCGTCGAGCAAACCGC 60.438 57.895 7.61 0.00 42.91 5.68
283 284 2.600475 TTTCGTCGAGCAAACCGCC 61.600 57.895 0.00 0.00 44.04 6.13
284 285 2.981977 TTTCGTCGAGCAAACCGCCT 62.982 55.000 0.00 0.00 44.04 5.52
285 286 3.479269 CGTCGAGCAAACCGCCTC 61.479 66.667 0.00 0.00 44.04 4.70
286 287 3.119096 GTCGAGCAAACCGCCTCC 61.119 66.667 0.00 0.00 44.04 4.30
287 288 3.621805 TCGAGCAAACCGCCTCCA 61.622 61.111 0.00 0.00 44.04 3.86
288 289 2.668212 CGAGCAAACCGCCTCCAA 60.668 61.111 0.00 0.00 44.04 3.53
289 290 2.258013 CGAGCAAACCGCCTCCAAA 61.258 57.895 0.00 0.00 44.04 3.28
290 291 1.791103 CGAGCAAACCGCCTCCAAAA 61.791 55.000 0.00 0.00 44.04 2.44
291 292 0.603065 GAGCAAACCGCCTCCAAAAT 59.397 50.000 0.00 0.00 44.04 1.82
292 293 1.000843 GAGCAAACCGCCTCCAAAATT 59.999 47.619 0.00 0.00 44.04 1.82
293 294 1.416030 AGCAAACCGCCTCCAAAATTT 59.584 42.857 0.00 0.00 44.04 1.82
294 295 2.630580 AGCAAACCGCCTCCAAAATTTA 59.369 40.909 0.00 0.00 44.04 1.40
295 296 2.993220 GCAAACCGCCTCCAAAATTTAG 59.007 45.455 0.00 0.00 32.94 1.85
296 297 3.554129 GCAAACCGCCTCCAAAATTTAGT 60.554 43.478 0.00 0.00 32.94 2.24
297 298 3.934457 AACCGCCTCCAAAATTTAGTG 57.066 42.857 0.00 0.00 0.00 2.74
298 299 1.544246 ACCGCCTCCAAAATTTAGTGC 59.456 47.619 0.00 0.00 0.00 4.40
299 300 1.543802 CCGCCTCCAAAATTTAGTGCA 59.456 47.619 0.00 0.00 0.00 4.57
300 301 2.415893 CCGCCTCCAAAATTTAGTGCAG 60.416 50.000 0.00 0.00 0.00 4.41
301 302 2.487762 CGCCTCCAAAATTTAGTGCAGA 59.512 45.455 0.00 0.00 0.00 4.26
302 303 3.670627 CGCCTCCAAAATTTAGTGCAGAC 60.671 47.826 0.00 0.00 0.00 3.51
303 304 3.670627 GCCTCCAAAATTTAGTGCAGACG 60.671 47.826 0.00 0.00 0.00 4.18
304 305 3.119849 CCTCCAAAATTTAGTGCAGACGG 60.120 47.826 0.00 0.00 0.00 4.79
305 306 3.482436 TCCAAAATTTAGTGCAGACGGT 58.518 40.909 0.00 0.00 0.00 4.83
306 307 3.886505 TCCAAAATTTAGTGCAGACGGTT 59.113 39.130 0.00 0.00 0.00 4.44
307 308 4.339814 TCCAAAATTTAGTGCAGACGGTTT 59.660 37.500 0.00 0.00 0.00 3.27
308 309 4.679654 CCAAAATTTAGTGCAGACGGTTTC 59.320 41.667 0.00 0.00 0.00 2.78
309 310 3.806316 AATTTAGTGCAGACGGTTTCG 57.194 42.857 0.00 0.00 43.02 3.46
310 311 1.504359 TTTAGTGCAGACGGTTTCGG 58.496 50.000 0.00 0.00 41.39 4.30
311 312 0.947180 TTAGTGCAGACGGTTTCGGC 60.947 55.000 0.00 0.00 46.68 5.54
318 319 3.446507 GACGGTTTCGGCTATCCAA 57.553 52.632 0.00 0.00 42.13 3.53
319 320 1.004595 GACGGTTTCGGCTATCCAAC 58.995 55.000 0.00 0.00 42.13 3.77
320 321 0.392060 ACGGTTTCGGCTATCCAACC 60.392 55.000 0.00 0.00 41.39 3.77
321 322 0.391927 CGGTTTCGGCTATCCAACCA 60.392 55.000 5.87 0.00 37.96 3.67
322 323 1.092348 GGTTTCGGCTATCCAACCAC 58.908 55.000 1.02 0.00 37.98 4.16
323 324 1.092348 GTTTCGGCTATCCAACCACC 58.908 55.000 0.00 0.00 0.00 4.61
324 325 0.988832 TTTCGGCTATCCAACCACCT 59.011 50.000 0.00 0.00 0.00 4.00
325 326 0.988832 TTCGGCTATCCAACCACCTT 59.011 50.000 0.00 0.00 0.00 3.50
326 327 0.251916 TCGGCTATCCAACCACCTTG 59.748 55.000 0.00 0.00 0.00 3.61
339 340 6.436843 CAACCACCTTGGAGTGATTATTAC 57.563 41.667 0.00 0.00 40.96 1.89
340 341 5.772393 ACCACCTTGGAGTGATTATTACA 57.228 39.130 0.00 0.00 40.96 2.41
341 342 5.745227 ACCACCTTGGAGTGATTATTACAG 58.255 41.667 0.00 0.00 40.96 2.74
342 343 5.126067 CCACCTTGGAGTGATTATTACAGG 58.874 45.833 0.00 0.00 40.96 4.00
343 344 4.576463 CACCTTGGAGTGATTATTACAGGC 59.424 45.833 0.00 0.00 40.34 4.85
344 345 4.227300 ACCTTGGAGTGATTATTACAGGCA 59.773 41.667 0.00 0.00 0.00 4.75
345 346 4.818546 CCTTGGAGTGATTATTACAGGCAG 59.181 45.833 0.00 0.00 0.00 4.85
346 347 3.808728 TGGAGTGATTATTACAGGCAGC 58.191 45.455 0.00 0.00 0.00 5.25
347 348 3.455910 TGGAGTGATTATTACAGGCAGCT 59.544 43.478 0.00 0.00 0.00 4.24
348 349 4.080356 TGGAGTGATTATTACAGGCAGCTT 60.080 41.667 0.00 0.00 0.00 3.74
349 350 4.884164 GGAGTGATTATTACAGGCAGCTTT 59.116 41.667 0.00 0.00 0.00 3.51
350 351 5.358160 GGAGTGATTATTACAGGCAGCTTTT 59.642 40.000 0.00 0.00 0.00 2.27
351 352 6.199937 AGTGATTATTACAGGCAGCTTTTG 57.800 37.500 0.00 0.00 0.00 2.44
352 353 5.711976 AGTGATTATTACAGGCAGCTTTTGT 59.288 36.000 0.00 0.00 0.00 2.83
353 354 6.030228 GTGATTATTACAGGCAGCTTTTGTC 58.970 40.000 0.00 0.00 0.00 3.18
354 355 5.125417 TGATTATTACAGGCAGCTTTTGTCC 59.875 40.000 0.00 0.00 29.16 4.02
355 356 2.656947 TTACAGGCAGCTTTTGTCCT 57.343 45.000 0.00 0.00 34.81 3.85
361 362 3.879912 CAGCTTTTGTCCTGCTTGG 57.120 52.632 0.00 0.00 34.51 3.61
362 363 1.035139 CAGCTTTTGTCCTGCTTGGT 58.965 50.000 0.00 0.00 34.51 3.67
363 364 1.000938 CAGCTTTTGTCCTGCTTGGTC 60.001 52.381 0.00 0.00 34.51 4.02
364 365 1.032014 GCTTTTGTCCTGCTTGGTCA 58.968 50.000 0.00 0.00 37.07 4.02
365 366 1.269257 GCTTTTGTCCTGCTTGGTCAC 60.269 52.381 0.00 0.00 33.76 3.67
366 367 2.023673 CTTTTGTCCTGCTTGGTCACA 58.976 47.619 0.00 0.00 33.76 3.58
367 368 2.136298 TTTGTCCTGCTTGGTCACAA 57.864 45.000 0.00 0.00 33.76 3.33
368 369 2.363306 TTGTCCTGCTTGGTCACAAT 57.637 45.000 0.00 0.00 35.73 2.71
369 370 3.500448 TTGTCCTGCTTGGTCACAATA 57.500 42.857 0.00 0.00 35.73 1.90
370 371 3.057969 TGTCCTGCTTGGTCACAATAG 57.942 47.619 0.00 0.00 35.73 1.73
371 372 1.740025 GTCCTGCTTGGTCACAATAGC 59.260 52.381 0.00 0.00 35.73 2.97
372 373 1.630369 TCCTGCTTGGTCACAATAGCT 59.370 47.619 0.00 0.00 35.73 3.32
373 374 2.040278 TCCTGCTTGGTCACAATAGCTT 59.960 45.455 0.00 0.00 35.73 3.74
374 375 2.421424 CCTGCTTGGTCACAATAGCTTC 59.579 50.000 0.00 0.00 35.73 3.86
375 376 2.421424 CTGCTTGGTCACAATAGCTTCC 59.579 50.000 0.00 0.00 35.73 3.46
376 377 1.745653 GCTTGGTCACAATAGCTTCCC 59.254 52.381 0.00 0.00 35.73 3.97
377 378 2.009774 CTTGGTCACAATAGCTTCCCG 58.990 52.381 0.00 0.00 35.73 5.14
378 379 1.271856 TGGTCACAATAGCTTCCCGA 58.728 50.000 0.00 0.00 0.00 5.14
379 380 1.207089 TGGTCACAATAGCTTCCCGAG 59.793 52.381 0.00 0.00 0.00 4.63
380 381 1.473434 GGTCACAATAGCTTCCCGAGG 60.473 57.143 0.00 0.00 0.00 4.63
381 382 0.830648 TCACAATAGCTTCCCGAGGG 59.169 55.000 0.65 0.65 0.00 4.30
382 383 0.815615 CACAATAGCTTCCCGAGGGC 60.816 60.000 2.58 0.00 34.68 5.19
383 384 1.227973 CAATAGCTTCCCGAGGGCC 60.228 63.158 2.58 0.00 34.68 5.80
384 385 2.808206 AATAGCTTCCCGAGGGCCG 61.808 63.158 2.58 0.00 38.18 6.13
399 400 4.137872 CCGCTGCCATTGCCCTTG 62.138 66.667 0.00 0.00 36.33 3.61
400 401 4.807039 CGCTGCCATTGCCCTTGC 62.807 66.667 0.00 0.00 36.33 4.01
401 402 3.387947 GCTGCCATTGCCCTTGCT 61.388 61.111 0.00 0.00 38.71 3.91
402 403 2.053865 GCTGCCATTGCCCTTGCTA 61.054 57.895 0.00 0.00 38.71 3.49
403 404 2.012902 GCTGCCATTGCCCTTGCTAG 62.013 60.000 0.00 0.00 38.71 3.42
404 405 0.682209 CTGCCATTGCCCTTGCTAGT 60.682 55.000 0.00 0.00 38.71 2.57
405 406 0.966875 TGCCATTGCCCTTGCTAGTG 60.967 55.000 0.00 0.00 38.71 2.74
406 407 1.811860 CCATTGCCCTTGCTAGTGC 59.188 57.895 0.00 0.00 38.71 4.40
407 408 1.430632 CATTGCCCTTGCTAGTGCG 59.569 57.895 0.00 0.00 43.34 5.34
408 409 1.002134 ATTGCCCTTGCTAGTGCGT 60.002 52.632 0.00 0.00 43.34 5.24
409 410 1.308069 ATTGCCCTTGCTAGTGCGTG 61.308 55.000 0.00 0.00 43.34 5.34
410 411 2.358737 GCCCTTGCTAGTGCGTGT 60.359 61.111 0.00 0.00 43.34 4.49
413 414 1.577328 CCCTTGCTAGTGCGTGTTGG 61.577 60.000 0.00 0.00 43.34 3.77
432 433 3.552875 TGGTATGAGAGAAGTAGACCCG 58.447 50.000 0.00 0.00 0.00 5.28
500 501 8.530804 AGCTATTTTAAGATCTCCTTGCAAAT 57.469 30.769 0.00 0.00 36.34 2.32
549 551 2.787680 CCGGACTAGCGATTTAGAAACG 59.212 50.000 0.00 0.00 0.00 3.60
550 552 2.787680 CGGACTAGCGATTTAGAAACGG 59.212 50.000 0.00 0.00 0.00 4.44
559 561 5.090083 GCGATTTAGAAACGGTGCATTTTA 58.910 37.500 0.00 0.00 0.00 1.52
581 583 7.820578 TTAAAATTTTACTCCCTCCGTTCAA 57.179 32.000 10.18 0.00 0.00 2.69
647 649 4.955925 TGAAACGAGTGAACAAACACAT 57.044 36.364 0.00 0.00 42.45 3.21
648 650 5.303747 TGAAACGAGTGAACAAACACATT 57.696 34.783 0.00 0.00 42.45 2.71
649 651 6.424176 TGAAACGAGTGAACAAACACATTA 57.576 33.333 0.00 0.00 42.45 1.90
650 652 6.482835 TGAAACGAGTGAACAAACACATTAG 58.517 36.000 0.00 0.00 42.45 1.73
651 653 6.314152 TGAAACGAGTGAACAAACACATTAGA 59.686 34.615 0.00 0.00 42.45 2.10
652 654 6.671614 AACGAGTGAACAAACACATTAGAA 57.328 33.333 0.00 0.00 42.45 2.10
653 655 6.287107 ACGAGTGAACAAACACATTAGAAG 57.713 37.500 0.00 0.00 42.45 2.85
654 656 5.815740 ACGAGTGAACAAACACATTAGAAGT 59.184 36.000 0.00 0.00 42.45 3.01
666 668 7.173863 ACACATTAGAAGTTTAGAACGTGTG 57.826 36.000 0.00 0.00 39.15 3.82
670 672 7.383300 ACATTAGAAGTTTAGAACGTGTGTACC 59.617 37.037 0.00 0.00 36.23 3.34
687 689 2.730550 ACCCACGTACGGTTTAGAAG 57.269 50.000 21.06 1.77 0.00 2.85
691 693 4.248058 CCCACGTACGGTTTAGAAGAAAT 58.752 43.478 21.06 0.00 0.00 2.17
790 815 0.240145 TGTACGCCGTGAAGTGAGAG 59.760 55.000 0.00 0.00 0.00 3.20
820 851 1.679680 CCATTTAGCATCTGGGCACAG 59.320 52.381 10.61 10.61 46.30 3.66
833 864 1.283321 GGGCACAGAAAGATCCTCCTT 59.717 52.381 0.00 0.00 0.00 3.36
834 865 2.291217 GGGCACAGAAAGATCCTCCTTT 60.291 50.000 0.00 0.00 38.92 3.11
895 930 4.988716 TGCACGTCCGTCCCTCCT 62.989 66.667 0.00 0.00 0.00 3.69
1191 1229 3.619038 CCGAGAAGCAGGTCAATAAACTC 59.381 47.826 0.00 0.00 0.00 3.01
1207 1245 1.289109 ACTCGAAATTGTCCCGCGTG 61.289 55.000 4.92 0.00 0.00 5.34
1224 1262 1.207089 CGTGCTCTCCCATTTCTACCA 59.793 52.381 0.00 0.00 0.00 3.25
1232 1270 5.755849 TCTCCCATTTCTACCAATTTCCTC 58.244 41.667 0.00 0.00 0.00 3.71
1238 1276 6.126478 CCATTTCTACCAATTTCCTCCTCCTA 60.126 42.308 0.00 0.00 0.00 2.94
1365 1408 2.569853 TGGAACCAGATTCTTTCGCCTA 59.430 45.455 0.00 0.00 37.48 3.93
1379 1422 5.523916 TCTTTCGCCTATCTCTAATTGTTGC 59.476 40.000 0.00 0.00 0.00 4.17
1396 1439 1.374758 GCGACTGAACTCCTGGTGG 60.375 63.158 0.33 0.00 0.00 4.61
1404 1447 0.405585 AACTCCTGGTGGTGATTGGG 59.594 55.000 0.33 0.00 34.23 4.12
1408 1451 0.336048 CCTGGTGGTGATTGGGGAAT 59.664 55.000 0.00 0.00 0.00 3.01
1410 1453 0.034574 TGGTGGTGATTGGGGAATCG 60.035 55.000 0.00 0.00 31.94 3.34
1437 1480 2.426522 TCTCCTGAATTTGCACCTTCG 58.573 47.619 0.00 0.00 0.00 3.79
1451 1494 1.151668 CCTTCGCTCTGTTCTGTTGG 58.848 55.000 0.00 0.00 0.00 3.77
1457 1500 5.188327 TCGCTCTGTTCTGTTGGATATAG 57.812 43.478 0.00 0.00 0.00 1.31
1474 1517 6.262944 TGGATATAGTGCAAAGCAATAACCTG 59.737 38.462 3.21 0.00 42.19 4.00
1476 1519 1.962807 AGTGCAAAGCAATAACCTGCA 59.037 42.857 0.00 0.00 45.18 4.41
1478 1521 2.925563 GTGCAAAGCAATAACCTGCATC 59.074 45.455 0.00 0.00 44.20 3.91
1483 1526 5.220529 GCAAAGCAATAACCTGCATCATTTC 60.221 40.000 0.00 0.00 45.18 2.17
1488 1531 7.784037 AGCAATAACCTGCATCATTTCATTTA 58.216 30.769 0.00 0.00 45.18 1.40
1510 1553 7.896383 TTAATTTTGCTACTAGGCCATCAAT 57.104 32.000 5.01 0.00 0.00 2.57
1563 1606 0.962356 GCTGTGCCTGGTGTTGCTAT 60.962 55.000 0.00 0.00 0.00 2.97
1576 1619 1.876156 GTTGCTATGAGCCAGGTATGC 59.124 52.381 0.00 0.00 41.51 3.14
1603 1646 5.539574 ACAATTTGGATCATTTCACCTGACA 59.460 36.000 0.78 0.00 0.00 3.58
1808 1851 4.120589 GTTCCGATGGTTCTCAGATAACC 58.879 47.826 10.25 10.25 45.53 2.85
1862 1905 2.799017 TCTGCTTCTAACCTACCGTCA 58.201 47.619 0.00 0.00 0.00 4.35
1924 1967 0.736053 TCTTCAACGTTTTTGCGCCT 59.264 45.000 4.18 0.00 34.88 5.52
1972 2015 6.017934 GTGTGTATCTTGTTCAATGTGTGACT 60.018 38.462 0.00 0.00 35.39 3.41
1984 2027 5.592282 TCAATGTGTGACTTGTGTTACCAAT 59.408 36.000 0.00 0.00 32.48 3.16
1993 2036 7.495934 GTGACTTGTGTTACCAATATCATAGCT 59.504 37.037 0.00 0.00 0.00 3.32
2012 2055 8.880244 TCATAGCTTTGACATATGGTAGGTTAT 58.120 33.333 7.80 0.00 0.00 1.89
2167 2212 8.066595 GCATATGCACTCTAGTTTCAATGTAAG 58.933 37.037 22.84 0.00 41.59 2.34
2171 2216 7.667557 TGCACTCTAGTTTCAATGTAAGTACT 58.332 34.615 0.00 0.00 0.00 2.73
2213 2258 5.838955 TCTTTCAGGTCTAAGAGGTATCCA 58.161 41.667 0.00 0.00 0.00 3.41
2550 2595 2.102588 GCGTCTATAAAAGCTCCCCAGA 59.897 50.000 0.00 0.00 0.00 3.86
2917 2977 8.784043 ACAAGTAAACTCATCCTTCAAACATAC 58.216 33.333 0.00 0.00 0.00 2.39
3210 3271 3.058224 GCGGATACTAATGGCAACCAATC 60.058 47.826 0.00 0.00 36.95 2.67
3279 3340 4.273235 GGCAGGTTTGTTTGAATTTTCCAG 59.727 41.667 0.00 0.00 0.00 3.86
3301 3362 9.295825 TCCAGACATTTTCTTTCTATTGCTTAA 57.704 29.630 0.00 0.00 28.96 1.85
3422 3490 4.332543 TGTTCACATATTTCGGCTCATGTC 59.667 41.667 0.00 0.00 29.31 3.06
3444 3512 3.190118 CCATGTGCTTCTTGACTTCCTTC 59.810 47.826 0.00 0.00 0.00 3.46
3510 3578 0.034337 TCTTTCCTTTGACCCGTCGG 59.966 55.000 3.60 3.60 0.00 4.79
3524 3592 1.602377 CCGTCGGAAGCAAGTTTCTTT 59.398 47.619 4.91 0.00 0.00 2.52
3558 3626 9.946165 ACTTTATAACTCAAAACTTACTGCAAC 57.054 29.630 0.00 0.00 0.00 4.17
3629 3697 5.160641 TCGGAATGCTTGTTTATCTTTTGC 58.839 37.500 0.00 0.00 0.00 3.68
3668 3736 1.349026 CTCAAAGAGCACTGGGAGGAA 59.651 52.381 4.93 0.00 0.00 3.36
3726 3794 4.703645 TCATGTCTCTCAGGTTAGTTCG 57.296 45.455 0.00 0.00 0.00 3.95
3800 3868 5.819991 AGACATCCAATTGGTAGTGAACAT 58.180 37.500 23.76 4.83 36.34 2.71
3816 3884 3.252215 TGAACATTGAACTAAGGGTTGCG 59.748 43.478 0.00 0.00 38.41 4.85
3820 3888 1.164411 TGAACTAAGGGTTGCGCATG 58.836 50.000 12.75 0.00 38.41 4.06
3831 3899 3.625764 GGGTTGCGCATGAAAATCTAGTA 59.374 43.478 12.75 0.00 0.00 1.82
3839 3907 6.456181 GCGCATGAAAATCTAGTATGGCTATC 60.456 42.308 0.30 0.00 0.00 2.08
3871 3939 9.612066 TGAAGAGTTTTTCCTGCAATTTAAATT 57.388 25.926 7.64 7.64 0.00 1.82
4146 4214 6.817140 GTGAGGTACACTATTAGGAAAAGGTG 59.183 42.308 0.00 0.00 45.13 4.00
4254 4322 3.764972 ACTAGTACAGCCAGGAAGTTCTC 59.235 47.826 2.25 0.00 0.00 2.87
4338 4406 3.270027 CTTCTATTCGTGGGACAATGCA 58.730 45.455 0.00 0.00 44.16 3.96
4363 4431 2.354203 GCATATAAAGCCTCCTCCCTCG 60.354 54.545 0.00 0.00 0.00 4.63
4538 4606 5.154222 GTGTTACTTATTTGTGAAGCCTGC 58.846 41.667 0.00 0.00 0.00 4.85
4577 4645 0.981277 GCCCTACCCTACAGGCTTCA 60.981 60.000 0.00 0.00 42.34 3.02
4707 4775 2.970324 GTGAACACGGCGAGGCAA 60.970 61.111 16.62 0.00 0.00 4.52
4772 4840 1.234615 TTGCCGCACTAAAGGTCAGC 61.235 55.000 0.00 0.00 0.00 4.26
4913 4981 0.695347 CCAGCTCTGGTTCTTCCCTT 59.305 55.000 7.75 0.00 45.53 3.95
5002 5070 1.347320 GCTTCTGAAAATGCAGCAGC 58.653 50.000 0.00 0.00 45.13 5.25
5019 5087 1.153469 GCGGGCTCTTCTCTTCAGG 60.153 63.158 0.00 0.00 0.00 3.86
5218 5286 3.009473 AGTTCTGGAAAGGAGCAATAGCA 59.991 43.478 0.00 0.00 45.49 3.49
5290 5358 2.840038 TCCTTGCTTATTCCTCTGCTGA 59.160 45.455 0.00 0.00 0.00 4.26
5291 5359 3.264193 TCCTTGCTTATTCCTCTGCTGAA 59.736 43.478 0.00 0.00 0.00 3.02
5292 5360 4.012374 CCTTGCTTATTCCTCTGCTGAAA 58.988 43.478 0.00 0.00 0.00 2.69
5293 5361 4.460382 CCTTGCTTATTCCTCTGCTGAAAA 59.540 41.667 0.00 0.00 0.00 2.29
5433 5501 8.184848 GTGGCAAATTACTCCTAGAAAGAAATC 58.815 37.037 0.00 0.00 0.00 2.17
5481 5549 4.463050 TTAGTTTGTGGGGGAAATGACT 57.537 40.909 0.00 0.00 0.00 3.41
5795 5868 6.009589 TGTGGGAAACATATATTATGCCCTG 58.990 40.000 10.67 0.00 35.36 4.45
5796 5869 6.183361 TGTGGGAAACATATATTATGCCCTGA 60.183 38.462 10.67 0.00 35.36 3.86
5797 5870 6.891908 GTGGGAAACATATATTATGCCCTGAT 59.108 38.462 10.67 0.00 35.36 2.90
5798 5871 7.397192 GTGGGAAACATATATTATGCCCTGATT 59.603 37.037 10.67 0.00 35.36 2.57
5799 5872 7.955185 TGGGAAACATATATTATGCCCTGATTT 59.045 33.333 10.67 0.00 35.36 2.17
5800 5873 8.815912 GGGAAACATATATTATGCCCTGATTTT 58.184 33.333 3.95 0.00 0.00 1.82
5801 5874 9.860898 GGAAACATATATTATGCCCTGATTTTC 57.139 33.333 0.00 0.00 0.00 2.29
5802 5875 9.860898 GAAACATATATTATGCCCTGATTTTCC 57.139 33.333 0.00 0.00 0.00 3.13
5803 5876 7.961326 ACATATATTATGCCCTGATTTTCCC 57.039 36.000 0.00 0.00 0.00 3.97
5804 5877 6.897413 ACATATATTATGCCCTGATTTTCCCC 59.103 38.462 0.00 0.00 0.00 4.81
5805 5878 3.704545 ATTATGCCCTGATTTTCCCCA 57.295 42.857 0.00 0.00 0.00 4.96
5806 5879 3.704545 TTATGCCCTGATTTTCCCCAT 57.295 42.857 0.00 0.00 0.00 4.00
5807 5880 1.797320 ATGCCCTGATTTTCCCCATG 58.203 50.000 0.00 0.00 0.00 3.66
5808 5881 0.413037 TGCCCTGATTTTCCCCATGT 59.587 50.000 0.00 0.00 0.00 3.21
5809 5882 0.826062 GCCCTGATTTTCCCCATGTG 59.174 55.000 0.00 0.00 0.00 3.21
5810 5883 1.896755 GCCCTGATTTTCCCCATGTGT 60.897 52.381 0.00 0.00 0.00 3.72
5811 5884 2.622977 GCCCTGATTTTCCCCATGTGTA 60.623 50.000 0.00 0.00 0.00 2.90
5812 5885 3.914771 CCCTGATTTTCCCCATGTGTAT 58.085 45.455 0.00 0.00 0.00 2.29
5813 5886 4.691376 GCCCTGATTTTCCCCATGTGTATA 60.691 45.833 0.00 0.00 0.00 1.47
5814 5887 5.644188 CCCTGATTTTCCCCATGTGTATAT 58.356 41.667 0.00 0.00 0.00 0.86
5815 5888 6.749772 GCCCTGATTTTCCCCATGTGTATATA 60.750 42.308 0.00 0.00 0.00 0.86
5816 5889 7.237982 CCCTGATTTTCCCCATGTGTATATAA 58.762 38.462 0.00 0.00 0.00 0.98
5817 5890 7.895429 CCCTGATTTTCCCCATGTGTATATAAT 59.105 37.037 0.00 0.00 0.00 1.28
5818 5891 8.742777 CCTGATTTTCCCCATGTGTATATAATG 58.257 37.037 0.00 0.00 0.00 1.90
5819 5892 8.648698 TGATTTTCCCCATGTGTATATAATGG 57.351 34.615 5.30 5.30 40.53 3.16
5828 5901 8.498054 CCATGTGTATATAATGGGAATCACTC 57.502 38.462 4.56 0.00 37.74 3.51
5829 5902 8.102676 CCATGTGTATATAATGGGAATCACTCA 58.897 37.037 4.56 0.00 37.74 3.41
5830 5903 9.676861 CATGTGTATATAATGGGAATCACTCAT 57.323 33.333 0.00 0.00 42.14 2.90
5831 5904 9.896645 ATGTGTATATAATGGGAATCACTCATC 57.103 33.333 0.00 0.00 38.99 2.92
5832 5905 8.321353 TGTGTATATAATGGGAATCACTCATCC 58.679 37.037 0.00 0.00 38.99 3.51
5833 5906 8.543774 GTGTATATAATGGGAATCACTCATCCT 58.456 37.037 0.00 0.00 38.99 3.24
5834 5907 9.782900 TGTATATAATGGGAATCACTCATCCTA 57.217 33.333 0.00 0.00 38.99 2.94
5836 5909 8.923838 ATATAATGGGAATCACTCATCCTAGT 57.076 34.615 0.00 0.00 38.99 2.57
5837 5910 5.983333 AATGGGAATCACTCATCCTAGTT 57.017 39.130 0.00 0.00 38.99 2.24
5838 5911 8.742125 ATAATGGGAATCACTCATCCTAGTTA 57.258 34.615 0.00 0.00 38.99 2.24
5842 5915 6.615316 TGGGAATCACTCATCCTAGTTAATGA 59.385 38.462 0.00 0.00 35.95 2.57
5880 5953 1.202964 TCCCGACACACCTTCTCTGTA 60.203 52.381 0.00 0.00 0.00 2.74
5923 5996 7.132128 ACATGGGGAAAATCAGTAAATACCAT 58.868 34.615 0.00 0.00 35.52 3.55
5942 6015 9.866655 AATACCATACCAACAGTTCATATCATT 57.133 29.630 0.00 0.00 0.00 2.57
5945 6018 7.833682 ACCATACCAACAGTTCATATCATTTGA 59.166 33.333 0.00 0.00 0.00 2.69
5956 6029 9.074576 AGTTCATATCATTTGACATGCATGTAT 57.925 29.630 31.45 21.36 41.95 2.29
5978 6051 2.330216 TCCTAGCTAGCCTCAAATCCC 58.670 52.381 15.74 0.00 0.00 3.85
5981 6054 0.842635 AGCTAGCCTCAAATCCCAGG 59.157 55.000 12.13 0.00 0.00 4.45
5985 6058 0.551131 AGCCTCAAATCCCAGGTCCT 60.551 55.000 0.00 0.00 31.65 3.85
6034 6107 0.884514 GCTTCTTTTGGAGCCTGGAC 59.115 55.000 0.00 0.00 0.00 4.02
6051 6124 0.234625 GACTTGCGTTCATGCGACAA 59.765 50.000 0.00 1.02 37.81 3.18
6068 6141 0.179140 CAACATTCGGGCGAAATGGG 60.179 55.000 13.05 3.80 37.69 4.00
6099 6172 1.002134 CGTTGGTGCCCCTCTTCAT 60.002 57.895 0.00 0.00 0.00 2.57
6136 6209 0.738762 CGGTCTCGACGTCCACTCTA 60.739 60.000 10.58 0.00 39.00 2.43
6193 6266 2.508526 ACAAGCATGTCCAAGTTCTCC 58.491 47.619 0.00 0.00 33.41 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.203640 TGGAGCGGTGACAGGTCT 60.204 61.111 14.03 0.00 36.47 3.85
1 2 2.048127 GTGGAGCGGTGACAGGTC 60.048 66.667 6.37 6.37 35.57 3.85
2 3 3.626924 GGTGGAGCGGTGACAGGT 61.627 66.667 0.00 0.00 0.00 4.00
3 4 4.742201 CGGTGGAGCGGTGACAGG 62.742 72.222 0.00 0.00 0.00 4.00
38 39 3.195002 ATTCGCGGCGATGTGGTG 61.195 61.111 26.95 0.00 35.23 4.17
39 40 3.195002 CATTCGCGGCGATGTGGT 61.195 61.111 26.95 7.36 35.23 4.16
40 41 3.940640 CCATTCGCGGCGATGTGG 61.941 66.667 29.89 29.89 36.35 4.17
41 42 3.940640 CCCATTCGCGGCGATGTG 61.941 66.667 26.95 24.63 35.23 3.21
48 49 0.248621 GAAGATTTGCCCATTCGCGG 60.249 55.000 6.13 0.00 0.00 6.46
49 50 0.248621 GGAAGATTTGCCCATTCGCG 60.249 55.000 0.00 0.00 0.00 5.87
50 51 0.817013 TGGAAGATTTGCCCATTCGC 59.183 50.000 0.00 0.00 0.00 4.70
51 52 1.134946 GGTGGAAGATTTGCCCATTCG 59.865 52.381 0.00 0.00 31.94 3.34
52 53 1.134946 CGGTGGAAGATTTGCCCATTC 59.865 52.381 0.00 0.00 31.94 2.67
53 54 1.185315 CGGTGGAAGATTTGCCCATT 58.815 50.000 0.00 0.00 31.94 3.16
54 55 1.322538 GCGGTGGAAGATTTGCCCAT 61.323 55.000 0.00 0.00 31.94 4.00
55 56 1.976474 GCGGTGGAAGATTTGCCCA 60.976 57.895 0.00 0.00 0.00 5.36
56 57 1.976474 TGCGGTGGAAGATTTGCCC 60.976 57.895 0.00 0.00 0.00 5.36
57 58 1.212751 GTGCGGTGGAAGATTTGCC 59.787 57.895 0.00 0.00 0.00 4.52
58 59 1.212751 GGTGCGGTGGAAGATTTGC 59.787 57.895 0.00 0.00 0.00 3.68
59 60 0.240945 GTGGTGCGGTGGAAGATTTG 59.759 55.000 0.00 0.00 0.00 2.32
60 61 0.179004 TGTGGTGCGGTGGAAGATTT 60.179 50.000 0.00 0.00 0.00 2.17
61 62 0.179004 TTGTGGTGCGGTGGAAGATT 60.179 50.000 0.00 0.00 0.00 2.40
62 63 0.889186 GTTGTGGTGCGGTGGAAGAT 60.889 55.000 0.00 0.00 0.00 2.40
63 64 1.525077 GTTGTGGTGCGGTGGAAGA 60.525 57.895 0.00 0.00 0.00 2.87
64 65 2.551912 GGTTGTGGTGCGGTGGAAG 61.552 63.158 0.00 0.00 0.00 3.46
65 66 2.517402 GGTTGTGGTGCGGTGGAA 60.517 61.111 0.00 0.00 0.00 3.53
66 67 4.920112 CGGTTGTGGTGCGGTGGA 62.920 66.667 0.00 0.00 0.00 4.02
76 77 2.034066 ATCTGCCCACCGGTTGTG 59.966 61.111 2.97 0.00 45.01 3.33
77 78 2.224159 AGATCTGCCCACCGGTTGT 61.224 57.895 2.97 0.00 0.00 3.32
78 79 1.746615 CAGATCTGCCCACCGGTTG 60.747 63.158 10.38 0.00 0.00 3.77
79 80 2.671070 CAGATCTGCCCACCGGTT 59.329 61.111 10.38 0.00 0.00 4.44
89 90 2.124983 CCCACGGTGGCAGATCTG 60.125 66.667 21.88 18.84 35.79 2.90
90 91 2.607750 ACCCACGGTGGCAGATCT 60.608 61.111 21.88 0.00 35.79 2.75
99 100 4.265056 GCTTGGTCCACCCACGGT 62.265 66.667 0.00 0.00 45.19 4.83
100 101 2.119484 TTAGCTTGGTCCACCCACGG 62.119 60.000 0.00 0.00 45.19 4.94
101 102 0.953960 GTTAGCTTGGTCCACCCACG 60.954 60.000 0.00 0.00 45.19 4.94
102 103 0.109723 TGTTAGCTTGGTCCACCCAC 59.890 55.000 0.00 0.00 45.19 4.61
103 104 0.109723 GTGTTAGCTTGGTCCACCCA 59.890 55.000 0.00 0.00 43.27 4.51
104 105 0.608308 GGTGTTAGCTTGGTCCACCC 60.608 60.000 0.00 0.00 39.71 4.61
105 106 0.953960 CGGTGTTAGCTTGGTCCACC 60.954 60.000 0.00 0.47 41.69 4.61
106 107 0.034337 TCGGTGTTAGCTTGGTCCAC 59.966 55.000 0.00 0.00 0.00 4.02
107 108 0.034337 GTCGGTGTTAGCTTGGTCCA 59.966 55.000 0.00 0.00 0.00 4.02
108 109 1.012486 CGTCGGTGTTAGCTTGGTCC 61.012 60.000 0.00 0.00 0.00 4.46
109 110 0.319297 ACGTCGGTGTTAGCTTGGTC 60.319 55.000 0.00 0.00 0.00 4.02
110 111 0.961019 TACGTCGGTGTTAGCTTGGT 59.039 50.000 0.00 0.00 0.00 3.67
111 112 1.336148 TGTACGTCGGTGTTAGCTTGG 60.336 52.381 0.00 0.00 0.00 3.61
112 113 2.054687 TGTACGTCGGTGTTAGCTTG 57.945 50.000 0.00 0.00 0.00 4.01
113 114 2.602878 CATGTACGTCGGTGTTAGCTT 58.397 47.619 0.00 0.00 0.00 3.74
114 115 1.135199 CCATGTACGTCGGTGTTAGCT 60.135 52.381 0.00 0.00 0.00 3.32
115 116 1.274596 CCATGTACGTCGGTGTTAGC 58.725 55.000 0.00 0.00 0.00 3.09
116 117 2.523015 GACCATGTACGTCGGTGTTAG 58.477 52.381 12.23 0.00 31.63 2.34
117 118 2.634982 GACCATGTACGTCGGTGTTA 57.365 50.000 12.23 0.00 31.63 2.41
118 119 3.502237 GACCATGTACGTCGGTGTT 57.498 52.632 12.23 0.00 31.63 3.32
124 125 0.979811 CGTTGTCGACCATGTACGTC 59.020 55.000 14.12 0.53 39.71 4.34
125 126 0.387622 CCGTTGTCGACCATGTACGT 60.388 55.000 14.12 0.00 39.71 3.57
126 127 1.680105 GCCGTTGTCGACCATGTACG 61.680 60.000 14.12 13.79 39.71 3.67
127 128 1.356527 GGCCGTTGTCGACCATGTAC 61.357 60.000 14.12 2.02 39.36 2.90
128 129 1.079681 GGCCGTTGTCGACCATGTA 60.080 57.895 14.12 0.00 39.36 2.29
129 130 2.358247 GGCCGTTGTCGACCATGT 60.358 61.111 14.12 0.00 39.36 3.21
130 131 2.358125 TGGCCGTTGTCGACCATG 60.358 61.111 14.12 7.55 44.05 3.66
132 133 4.612412 GGTGGCCGTTGTCGACCA 62.612 66.667 14.12 0.00 46.47 4.02
151 152 0.861837 AACTCTTGTGCGCTTCTTCG 59.138 50.000 9.73 0.00 0.00 3.79
152 153 1.069636 CCAACTCTTGTGCGCTTCTTC 60.070 52.381 9.73 0.00 0.00 2.87
153 154 0.947244 CCAACTCTTGTGCGCTTCTT 59.053 50.000 9.73 0.00 0.00 2.52
154 155 1.510480 GCCAACTCTTGTGCGCTTCT 61.510 55.000 9.73 0.00 0.00 2.85
155 156 1.081840 GCCAACTCTTGTGCGCTTC 60.082 57.895 9.73 2.14 0.00 3.86
156 157 2.896801 CGCCAACTCTTGTGCGCTT 61.897 57.895 9.73 0.00 41.05 4.68
157 158 3.349006 CGCCAACTCTTGTGCGCT 61.349 61.111 9.73 0.00 41.05 5.92
158 159 4.389576 CCGCCAACTCTTGTGCGC 62.390 66.667 0.00 0.00 43.82 6.09
159 160 2.954753 GACCGCCAACTCTTGTGCG 61.955 63.158 9.49 9.49 44.35 5.34
160 161 1.891919 TGACCGCCAACTCTTGTGC 60.892 57.895 0.00 0.00 0.00 4.57
161 162 1.507141 GGTGACCGCCAACTCTTGTG 61.507 60.000 0.00 0.00 0.00 3.33
162 163 1.227853 GGTGACCGCCAACTCTTGT 60.228 57.895 0.00 0.00 0.00 3.16
163 164 1.227823 TGGTGACCGCCAACTCTTG 60.228 57.895 0.00 0.00 35.25 3.02
164 165 1.227853 GTGGTGACCGCCAACTCTT 60.228 57.895 3.20 0.00 40.68 2.85
165 166 2.426023 GTGGTGACCGCCAACTCT 59.574 61.111 3.20 0.00 40.68 3.24
166 167 3.041940 CGTGGTGACCGCCAACTC 61.042 66.667 9.96 0.00 40.68 3.01
175 176 4.595538 TGGTCGTGGCGTGGTGAC 62.596 66.667 0.00 0.00 0.00 3.67
176 177 3.171828 ATTGGTCGTGGCGTGGTGA 62.172 57.895 0.00 0.00 0.00 4.02
177 178 2.668212 ATTGGTCGTGGCGTGGTG 60.668 61.111 0.00 0.00 0.00 4.17
178 179 2.668212 CATTGGTCGTGGCGTGGT 60.668 61.111 0.00 0.00 0.00 4.16
179 180 3.430862 CCATTGGTCGTGGCGTGG 61.431 66.667 0.00 0.00 0.00 4.94
180 181 3.430862 CCCATTGGTCGTGGCGTG 61.431 66.667 1.20 0.00 35.35 5.34
183 184 3.443045 CTGCCCATTGGTCGTGGC 61.443 66.667 1.20 0.00 44.27 5.01
184 185 0.180171 TATCTGCCCATTGGTCGTGG 59.820 55.000 1.20 0.00 36.47 4.94
185 186 1.134401 AGTATCTGCCCATTGGTCGTG 60.134 52.381 1.20 0.00 0.00 4.35
186 187 1.139058 GAGTATCTGCCCATTGGTCGT 59.861 52.381 1.20 0.00 0.00 4.34
187 188 1.871080 GAGTATCTGCCCATTGGTCG 58.129 55.000 1.20 0.00 0.00 4.79
206 207 0.036010 AGGAATTGTCTGCGGGTCAG 60.036 55.000 0.00 0.00 44.21 3.51
207 208 1.207089 CTAGGAATTGTCTGCGGGTCA 59.793 52.381 0.00 0.00 0.00 4.02
208 209 1.480954 TCTAGGAATTGTCTGCGGGTC 59.519 52.381 0.00 0.00 0.00 4.46
209 210 1.482593 CTCTAGGAATTGTCTGCGGGT 59.517 52.381 0.00 0.00 0.00 5.28
210 211 1.808133 GCTCTAGGAATTGTCTGCGGG 60.808 57.143 0.00 0.00 0.00 6.13
211 212 1.576356 GCTCTAGGAATTGTCTGCGG 58.424 55.000 0.00 0.00 0.00 5.69
212 213 1.134699 TGGCTCTAGGAATTGTCTGCG 60.135 52.381 0.00 0.00 0.00 5.18
213 214 2.698855 TGGCTCTAGGAATTGTCTGC 57.301 50.000 0.00 0.00 0.00 4.26
214 215 3.691609 GGTTTGGCTCTAGGAATTGTCTG 59.308 47.826 0.00 0.00 0.00 3.51
215 216 3.619979 CGGTTTGGCTCTAGGAATTGTCT 60.620 47.826 0.00 0.00 0.00 3.41
216 217 2.678336 CGGTTTGGCTCTAGGAATTGTC 59.322 50.000 0.00 0.00 0.00 3.18
217 218 2.039879 ACGGTTTGGCTCTAGGAATTGT 59.960 45.455 0.00 0.00 0.00 2.71
218 219 2.678336 GACGGTTTGGCTCTAGGAATTG 59.322 50.000 0.00 0.00 0.00 2.32
219 220 2.572104 AGACGGTTTGGCTCTAGGAATT 59.428 45.455 0.00 0.00 0.00 2.17
220 221 2.188817 AGACGGTTTGGCTCTAGGAAT 58.811 47.619 0.00 0.00 0.00 3.01
221 222 1.640917 AGACGGTTTGGCTCTAGGAA 58.359 50.000 0.00 0.00 0.00 3.36
222 223 2.097825 GTAGACGGTTTGGCTCTAGGA 58.902 52.381 0.00 0.00 0.00 2.94
223 224 1.202268 CGTAGACGGTTTGGCTCTAGG 60.202 57.143 0.00 0.00 35.37 3.02
224 225 1.471684 ACGTAGACGGTTTGGCTCTAG 59.528 52.381 7.04 0.00 44.95 2.43
225 226 1.538047 ACGTAGACGGTTTGGCTCTA 58.462 50.000 7.04 0.00 44.95 2.43
226 227 0.677842 AACGTAGACGGTTTGGCTCT 59.322 50.000 7.04 0.00 44.95 4.09
227 228 0.788391 CAACGTAGACGGTTTGGCTC 59.212 55.000 7.04 0.00 44.95 4.70
228 229 0.601841 CCAACGTAGACGGTTTGGCT 60.602 55.000 10.40 0.00 44.95 4.75
229 230 0.881600 ACCAACGTAGACGGTTTGGC 60.882 55.000 18.94 0.00 44.41 4.52
230 231 1.585297 AACCAACGTAGACGGTTTGG 58.415 50.000 17.94 17.94 45.37 3.28
231 232 3.641648 TCTAACCAACGTAGACGGTTTG 58.358 45.455 14.43 12.87 41.26 2.93
232 233 3.305608 CCTCTAACCAACGTAGACGGTTT 60.306 47.826 14.43 0.00 41.26 3.27
233 234 2.229784 CCTCTAACCAACGTAGACGGTT 59.770 50.000 13.88 13.88 44.71 4.44
234 235 1.815003 CCTCTAACCAACGTAGACGGT 59.185 52.381 7.04 0.00 44.95 4.83
235 236 2.086869 TCCTCTAACCAACGTAGACGG 58.913 52.381 7.04 0.00 44.95 4.79
236 237 4.367386 AATCCTCTAACCAACGTAGACG 57.633 45.455 0.00 0.00 46.33 4.18
237 238 6.971756 GTCTAAATCCTCTAACCAACGTAGAC 59.028 42.308 0.00 0.00 0.00 2.59
238 239 6.183360 CGTCTAAATCCTCTAACCAACGTAGA 60.183 42.308 0.00 0.00 0.00 2.59
239 240 5.970023 CGTCTAAATCCTCTAACCAACGTAG 59.030 44.000 0.00 0.00 0.00 3.51
240 241 5.163622 CCGTCTAAATCCTCTAACCAACGTA 60.164 44.000 0.00 0.00 0.00 3.57
241 242 4.381292 CCGTCTAAATCCTCTAACCAACGT 60.381 45.833 0.00 0.00 0.00 3.99
242 243 4.110482 CCGTCTAAATCCTCTAACCAACG 58.890 47.826 0.00 0.00 0.00 4.10
243 244 5.082251 ACCGTCTAAATCCTCTAACCAAC 57.918 43.478 0.00 0.00 0.00 3.77
244 245 5.750352 AACCGTCTAAATCCTCTAACCAA 57.250 39.130 0.00 0.00 0.00 3.67
245 246 5.622914 CGAAACCGTCTAAATCCTCTAACCA 60.623 44.000 0.00 0.00 0.00 3.67
246 247 4.802563 CGAAACCGTCTAAATCCTCTAACC 59.197 45.833 0.00 0.00 0.00 2.85
247 248 5.405797 ACGAAACCGTCTAAATCCTCTAAC 58.594 41.667 0.00 0.00 34.90 2.34
248 249 5.649782 ACGAAACCGTCTAAATCCTCTAA 57.350 39.130 0.00 0.00 34.90 2.10
261 262 1.493134 GGTTTGCTCGACGAAACCGT 61.493 55.000 12.77 0.00 41.23 4.83
262 263 1.203313 GGTTTGCTCGACGAAACCG 59.797 57.895 12.77 0.00 41.23 4.44
263 264 1.203313 CGGTTTGCTCGACGAAACC 59.797 57.895 16.57 16.57 45.23 3.27
264 265 1.438222 GCGGTTTGCTCGACGAAAC 60.438 57.895 0.00 0.37 41.73 2.78
265 266 2.600475 GGCGGTTTGCTCGACGAAA 61.600 57.895 0.00 0.00 45.43 3.46
266 267 3.039588 GGCGGTTTGCTCGACGAA 61.040 61.111 0.00 0.00 45.43 3.85
267 268 3.909258 GAGGCGGTTTGCTCGACGA 62.909 63.158 0.00 0.00 45.43 4.20
268 269 3.479269 GAGGCGGTTTGCTCGACG 61.479 66.667 0.00 0.00 45.43 5.12
269 270 3.119096 GGAGGCGGTTTGCTCGAC 61.119 66.667 0.00 0.00 45.43 4.20
270 271 2.668185 TTTGGAGGCGGTTTGCTCGA 62.668 55.000 0.00 0.00 45.43 4.04
271 272 1.791103 TTTTGGAGGCGGTTTGCTCG 61.791 55.000 0.00 0.00 45.43 5.03
272 273 0.603065 ATTTTGGAGGCGGTTTGCTC 59.397 50.000 0.00 0.00 45.43 4.26
273 274 1.047801 AATTTTGGAGGCGGTTTGCT 58.952 45.000 0.00 0.00 45.43 3.91
274 275 1.877637 AAATTTTGGAGGCGGTTTGC 58.122 45.000 0.00 0.00 45.38 3.68
275 276 3.987220 CACTAAATTTTGGAGGCGGTTTG 59.013 43.478 0.00 0.00 0.00 2.93
276 277 3.554129 GCACTAAATTTTGGAGGCGGTTT 60.554 43.478 0.00 0.00 0.00 3.27
277 278 2.029380 GCACTAAATTTTGGAGGCGGTT 60.029 45.455 0.00 0.00 0.00 4.44
278 279 1.544246 GCACTAAATTTTGGAGGCGGT 59.456 47.619 0.00 0.00 0.00 5.68
279 280 1.543802 TGCACTAAATTTTGGAGGCGG 59.456 47.619 0.00 0.00 0.00 6.13
280 281 2.487762 TCTGCACTAAATTTTGGAGGCG 59.512 45.455 10.41 5.64 32.37 5.52
281 282 3.670627 CGTCTGCACTAAATTTTGGAGGC 60.671 47.826 10.41 8.28 32.84 4.70
282 283 3.119849 CCGTCTGCACTAAATTTTGGAGG 60.120 47.826 10.41 2.07 32.37 4.30
283 284 3.502211 ACCGTCTGCACTAAATTTTGGAG 59.498 43.478 0.00 0.15 32.74 3.86
284 285 3.482436 ACCGTCTGCACTAAATTTTGGA 58.518 40.909 0.00 0.00 0.00 3.53
285 286 3.915437 ACCGTCTGCACTAAATTTTGG 57.085 42.857 0.00 0.00 0.00 3.28
286 287 4.378616 CGAAACCGTCTGCACTAAATTTTG 59.621 41.667 0.00 0.00 0.00 2.44
287 288 4.533222 CGAAACCGTCTGCACTAAATTTT 58.467 39.130 0.00 0.00 0.00 1.82
288 289 3.058501 CCGAAACCGTCTGCACTAAATTT 60.059 43.478 0.00 0.00 0.00 1.82
289 290 2.482721 CCGAAACCGTCTGCACTAAATT 59.517 45.455 0.00 0.00 0.00 1.82
290 291 2.073816 CCGAAACCGTCTGCACTAAAT 58.926 47.619 0.00 0.00 0.00 1.40
291 292 1.504359 CCGAAACCGTCTGCACTAAA 58.496 50.000 0.00 0.00 0.00 1.85
292 293 0.947180 GCCGAAACCGTCTGCACTAA 60.947 55.000 0.00 0.00 36.54 2.24
293 294 1.373748 GCCGAAACCGTCTGCACTA 60.374 57.895 0.00 0.00 36.54 2.74
294 295 1.812686 TAGCCGAAACCGTCTGCACT 61.813 55.000 0.00 0.00 38.85 4.40
295 296 0.739813 ATAGCCGAAACCGTCTGCAC 60.740 55.000 0.00 0.00 38.85 4.57
296 297 0.459585 GATAGCCGAAACCGTCTGCA 60.460 55.000 0.00 0.00 38.85 4.41
297 298 1.152383 GGATAGCCGAAACCGTCTGC 61.152 60.000 0.00 0.00 36.76 4.26
298 299 0.174845 TGGATAGCCGAAACCGTCTG 59.825 55.000 0.00 0.00 36.79 3.51
299 300 0.899720 TTGGATAGCCGAAACCGTCT 59.100 50.000 0.00 0.00 36.79 4.18
300 301 1.004595 GTTGGATAGCCGAAACCGTC 58.995 55.000 0.00 0.00 36.79 4.79
301 302 0.392060 GGTTGGATAGCCGAAACCGT 60.392 55.000 3.71 0.00 32.47 4.83
302 303 0.391927 TGGTTGGATAGCCGAAACCG 60.392 55.000 13.02 0.00 41.10 4.44
303 304 1.092348 GTGGTTGGATAGCCGAAACC 58.908 55.000 11.42 11.42 39.52 3.27
304 305 1.092348 GGTGGTTGGATAGCCGAAAC 58.908 55.000 0.00 0.00 36.79 2.78
305 306 0.988832 AGGTGGTTGGATAGCCGAAA 59.011 50.000 0.00 0.00 36.79 3.46
306 307 0.988832 AAGGTGGTTGGATAGCCGAA 59.011 50.000 0.00 0.00 36.79 4.30
307 308 0.251916 CAAGGTGGTTGGATAGCCGA 59.748 55.000 0.00 0.00 36.79 5.54
308 309 2.780595 CAAGGTGGTTGGATAGCCG 58.219 57.895 0.00 0.00 36.79 5.52
316 317 5.943416 TGTAATAATCACTCCAAGGTGGTTG 59.057 40.000 3.74 0.00 40.28 3.77
317 318 6.134535 TGTAATAATCACTCCAAGGTGGTT 57.865 37.500 0.00 0.00 42.35 3.67
318 319 5.339200 CCTGTAATAATCACTCCAAGGTGGT 60.339 44.000 0.00 0.00 39.03 4.16
319 320 5.126067 CCTGTAATAATCACTCCAAGGTGG 58.874 45.833 0.00 0.00 39.43 4.61
320 321 4.576463 GCCTGTAATAATCACTCCAAGGTG 59.424 45.833 0.00 0.00 38.44 4.00
321 322 4.227300 TGCCTGTAATAATCACTCCAAGGT 59.773 41.667 0.00 0.00 0.00 3.50
322 323 4.780815 TGCCTGTAATAATCACTCCAAGG 58.219 43.478 0.00 0.00 0.00 3.61
323 324 4.274459 GCTGCCTGTAATAATCACTCCAAG 59.726 45.833 0.00 0.00 0.00 3.61
324 325 4.080356 AGCTGCCTGTAATAATCACTCCAA 60.080 41.667 0.00 0.00 0.00 3.53
325 326 3.455910 AGCTGCCTGTAATAATCACTCCA 59.544 43.478 0.00 0.00 0.00 3.86
326 327 4.078639 AGCTGCCTGTAATAATCACTCC 57.921 45.455 0.00 0.00 0.00 3.85
327 328 6.127897 ACAAAAGCTGCCTGTAATAATCACTC 60.128 38.462 0.00 0.00 0.00 3.51
328 329 5.711976 ACAAAAGCTGCCTGTAATAATCACT 59.288 36.000 0.00 0.00 0.00 3.41
329 330 5.954335 ACAAAAGCTGCCTGTAATAATCAC 58.046 37.500 0.00 0.00 0.00 3.06
330 331 5.125417 GGACAAAAGCTGCCTGTAATAATCA 59.875 40.000 0.00 0.00 0.00 2.57
331 332 5.358160 AGGACAAAAGCTGCCTGTAATAATC 59.642 40.000 0.00 0.00 32.35 1.75
332 333 5.126061 CAGGACAAAAGCTGCCTGTAATAAT 59.874 40.000 0.00 0.00 41.09 1.28
333 334 4.458989 CAGGACAAAAGCTGCCTGTAATAA 59.541 41.667 0.00 0.00 41.09 1.40
334 335 4.009675 CAGGACAAAAGCTGCCTGTAATA 58.990 43.478 0.00 0.00 41.09 0.98
335 336 2.821969 CAGGACAAAAGCTGCCTGTAAT 59.178 45.455 0.00 0.00 41.09 1.89
336 337 2.229792 CAGGACAAAAGCTGCCTGTAA 58.770 47.619 0.00 0.00 41.09 2.41
337 338 1.896220 CAGGACAAAAGCTGCCTGTA 58.104 50.000 0.00 0.00 41.09 2.74
338 339 1.458639 GCAGGACAAAAGCTGCCTGT 61.459 55.000 16.32 8.08 44.63 4.00
339 340 1.177256 AGCAGGACAAAAGCTGCCTG 61.177 55.000 12.75 12.75 45.13 4.85
340 341 0.468771 AAGCAGGACAAAAGCTGCCT 60.469 50.000 0.00 0.00 43.15 4.75
341 342 0.319297 CAAGCAGGACAAAAGCTGCC 60.319 55.000 0.00 0.00 43.15 4.85
342 343 0.319297 CCAAGCAGGACAAAAGCTGC 60.319 55.000 0.00 0.00 41.22 5.25
343 344 1.000938 GACCAAGCAGGACAAAAGCTG 60.001 52.381 1.83 0.00 41.22 4.24
344 345 1.322442 GACCAAGCAGGACAAAAGCT 58.678 50.000 1.83 0.00 41.22 3.74
345 346 1.032014 TGACCAAGCAGGACAAAAGC 58.968 50.000 1.83 0.00 39.13 3.51
346 347 2.023673 TGTGACCAAGCAGGACAAAAG 58.976 47.619 1.83 0.00 43.58 2.27
347 348 2.136298 TGTGACCAAGCAGGACAAAA 57.864 45.000 1.83 0.00 43.58 2.44
348 349 2.136298 TTGTGACCAAGCAGGACAAA 57.864 45.000 1.83 0.00 43.58 2.83
349 350 2.363306 ATTGTGACCAAGCAGGACAA 57.637 45.000 1.83 3.95 43.58 3.18
350 351 2.875672 GCTATTGTGACCAAGCAGGACA 60.876 50.000 1.83 0.00 41.22 4.02
351 352 1.740025 GCTATTGTGACCAAGCAGGAC 59.260 52.381 1.83 0.00 41.22 3.85
352 353 1.630369 AGCTATTGTGACCAAGCAGGA 59.370 47.619 1.83 0.00 41.22 3.86
353 354 2.119801 AGCTATTGTGACCAAGCAGG 57.880 50.000 4.19 0.00 45.67 4.85
354 355 2.421424 GGAAGCTATTGTGACCAAGCAG 59.579 50.000 0.00 0.00 33.17 4.24
355 356 2.436417 GGAAGCTATTGTGACCAAGCA 58.564 47.619 0.00 0.00 33.17 3.91
356 357 1.745653 GGGAAGCTATTGTGACCAAGC 59.254 52.381 0.00 0.00 33.17 4.01
357 358 2.009774 CGGGAAGCTATTGTGACCAAG 58.990 52.381 0.00 0.00 33.17 3.61
358 359 1.626321 TCGGGAAGCTATTGTGACCAA 59.374 47.619 0.00 0.00 34.45 3.67
359 360 1.207089 CTCGGGAAGCTATTGTGACCA 59.793 52.381 0.00 0.00 0.00 4.02
360 361 1.473434 CCTCGGGAAGCTATTGTGACC 60.473 57.143 0.00 0.00 0.00 4.02
361 362 1.473434 CCCTCGGGAAGCTATTGTGAC 60.473 57.143 0.00 0.00 37.50 3.67
362 363 0.830648 CCCTCGGGAAGCTATTGTGA 59.169 55.000 0.00 0.00 37.50 3.58
363 364 0.815615 GCCCTCGGGAAGCTATTGTG 60.816 60.000 6.08 0.00 37.50 3.33
364 365 1.527370 GCCCTCGGGAAGCTATTGT 59.473 57.895 6.08 0.00 37.50 2.71
365 366 1.227973 GGCCCTCGGGAAGCTATTG 60.228 63.158 6.08 0.00 37.50 1.90
366 367 2.808206 CGGCCCTCGGGAAGCTATT 61.808 63.158 6.08 0.00 37.50 1.73
367 368 3.234730 CGGCCCTCGGGAAGCTAT 61.235 66.667 6.08 0.00 37.50 2.97
382 383 4.137872 CAAGGGCAATGGCAGCGG 62.138 66.667 9.51 0.00 43.71 5.52
383 384 4.807039 GCAAGGGCAATGGCAGCG 62.807 66.667 9.51 0.00 43.71 5.18
384 385 2.012902 CTAGCAAGGGCAATGGCAGC 62.013 60.000 9.51 9.44 44.61 5.25
385 386 0.682209 ACTAGCAAGGGCAATGGCAG 60.682 55.000 9.51 0.00 44.61 4.85
386 387 0.966875 CACTAGCAAGGGCAATGGCA 60.967 55.000 9.51 0.00 44.61 4.92
387 388 1.811860 CACTAGCAAGGGCAATGGC 59.188 57.895 0.00 0.00 44.61 4.40
394 395 1.577328 CCAACACGCACTAGCAAGGG 61.577 60.000 0.00 0.00 42.27 3.95
395 396 0.884704 ACCAACACGCACTAGCAAGG 60.885 55.000 0.00 0.00 42.27 3.61
396 397 1.790755 TACCAACACGCACTAGCAAG 58.209 50.000 0.00 0.00 42.27 4.01
397 398 2.073056 CATACCAACACGCACTAGCAA 58.927 47.619 0.00 0.00 42.27 3.91
398 399 1.273886 TCATACCAACACGCACTAGCA 59.726 47.619 0.00 0.00 42.27 3.49
399 400 1.927174 CTCATACCAACACGCACTAGC 59.073 52.381 0.00 0.00 37.42 3.42
400 401 3.128764 TCTCTCATACCAACACGCACTAG 59.871 47.826 0.00 0.00 0.00 2.57
401 402 3.086282 TCTCTCATACCAACACGCACTA 58.914 45.455 0.00 0.00 0.00 2.74
402 403 1.893137 TCTCTCATACCAACACGCACT 59.107 47.619 0.00 0.00 0.00 4.40
403 404 2.363788 TCTCTCATACCAACACGCAC 57.636 50.000 0.00 0.00 0.00 5.34
404 405 2.299013 ACTTCTCTCATACCAACACGCA 59.701 45.455 0.00 0.00 0.00 5.24
405 406 2.960819 ACTTCTCTCATACCAACACGC 58.039 47.619 0.00 0.00 0.00 5.34
406 407 5.333513 GTCTACTTCTCTCATACCAACACG 58.666 45.833 0.00 0.00 0.00 4.49
407 408 5.394333 GGGTCTACTTCTCTCATACCAACAC 60.394 48.000 0.00 0.00 0.00 3.32
408 409 4.710375 GGGTCTACTTCTCTCATACCAACA 59.290 45.833 0.00 0.00 0.00 3.33
409 410 4.202030 CGGGTCTACTTCTCTCATACCAAC 60.202 50.000 0.00 0.00 0.00 3.77
410 411 3.952323 CGGGTCTACTTCTCTCATACCAA 59.048 47.826 0.00 0.00 0.00 3.67
413 414 3.251487 GCTCGGGTCTACTTCTCTCATAC 59.749 52.174 0.00 0.00 0.00 2.39
464 465 6.854496 TCTTAAAATAGCTTGTTGACGTGT 57.146 33.333 0.00 0.00 0.00 4.49
469 470 8.950210 CAAGGAGATCTTAAAATAGCTTGTTGA 58.050 33.333 0.00 0.00 33.68 3.18
549 551 7.333423 GGAGGGAGTAAAATTTTAAAATGCACC 59.667 37.037 14.04 11.65 0.00 5.01
550 552 7.062956 CGGAGGGAGTAAAATTTTAAAATGCAC 59.937 37.037 14.04 11.58 0.00 4.57
559 561 6.911250 ATTGAACGGAGGGAGTAAAATTTT 57.089 33.333 8.75 8.75 0.00 1.82
606 608 5.945466 TCAATGCGTATGTAGTCCGTATA 57.055 39.130 0.00 0.00 0.00 1.47
647 649 6.183360 TGGGTACACACGTTCTAAACTTCTAA 60.183 38.462 0.00 0.00 0.00 2.10
648 650 5.301551 TGGGTACACACGTTCTAAACTTCTA 59.698 40.000 0.00 0.00 0.00 2.10
649 651 4.099881 TGGGTACACACGTTCTAAACTTCT 59.900 41.667 0.00 0.00 0.00 2.85
650 652 4.209911 GTGGGTACACACGTTCTAAACTTC 59.790 45.833 13.48 0.00 46.90 3.01
651 653 4.122046 GTGGGTACACACGTTCTAAACTT 58.878 43.478 13.48 0.00 46.90 2.66
652 654 3.721035 GTGGGTACACACGTTCTAAACT 58.279 45.455 13.48 0.00 46.90 2.66
666 668 3.190535 TCTTCTAAACCGTACGTGGGTAC 59.809 47.826 15.21 0.00 44.50 3.34
670 672 6.949578 TTATTTCTTCTAAACCGTACGTGG 57.050 37.500 15.21 1.90 0.00 4.94
790 815 1.226295 GCTAAATGGTGAACGCGCC 60.226 57.895 5.73 0.00 45.13 6.53
854 888 2.122989 ACCTGTCACGGTCCCTGT 60.123 61.111 0.00 0.00 29.14 4.00
888 923 1.704628 TCAGCATTGTCAAAGGAGGGA 59.295 47.619 0.00 0.00 0.00 4.20
895 930 4.516698 GGAGAAGAAGTCAGCATTGTCAAA 59.483 41.667 0.00 0.00 0.00 2.69
1191 1229 2.202298 GCACGCGGGACAATTTCG 60.202 61.111 15.48 0.00 0.00 3.46
1207 1245 4.339530 GGAAATTGGTAGAAATGGGAGAGC 59.660 45.833 0.00 0.00 0.00 4.09
1224 1262 5.204292 GCAGGAAAATAGGAGGAGGAAATT 58.796 41.667 0.00 0.00 0.00 1.82
1232 1270 1.571919 CGACGCAGGAAAATAGGAGG 58.428 55.000 0.00 0.00 0.00 4.30
1238 1276 1.981254 CAATTGCGACGCAGGAAAAT 58.019 45.000 23.18 10.43 40.61 1.82
1277 1315 1.610379 GACCCCCATTTGCTTGGCT 60.610 57.895 0.00 0.00 35.29 4.75
1279 1317 2.310538 GATAGACCCCCATTTGCTTGG 58.689 52.381 0.00 0.00 36.46 3.61
1365 1408 5.482908 AGTTCAGTCGCAACAATTAGAGAT 58.517 37.500 0.00 0.00 0.00 2.75
1379 1422 0.319900 CACCACCAGGAGTTCAGTCG 60.320 60.000 0.00 0.00 38.69 4.18
1396 1439 3.199880 ACAGATCGATTCCCCAATCAC 57.800 47.619 0.00 0.00 38.77 3.06
1404 1447 4.392921 TTCAGGAGAACAGATCGATTCC 57.607 45.455 0.00 0.82 0.00 3.01
1408 1451 3.935203 GCAAATTCAGGAGAACAGATCGA 59.065 43.478 0.00 0.00 36.39 3.59
1410 1453 4.142513 GGTGCAAATTCAGGAGAACAGATC 60.143 45.833 0.00 0.00 36.39 2.75
1437 1480 4.509600 GCACTATATCCAACAGAACAGAGC 59.490 45.833 0.00 0.00 0.00 4.09
1451 1494 6.145535 GCAGGTTATTGCTTTGCACTATATC 58.854 40.000 0.00 0.00 38.71 1.63
1457 1500 2.437200 TGCAGGTTATTGCTTTGCAC 57.563 45.000 0.00 0.00 44.38 4.57
1478 1521 9.034544 GGCCTAGTAGCAAAATTAAATGAAATG 57.965 33.333 0.00 0.00 0.00 2.32
1483 1526 7.715657 TGATGGCCTAGTAGCAAAATTAAATG 58.284 34.615 3.32 0.00 0.00 2.32
1488 1531 6.796785 AATTGATGGCCTAGTAGCAAAATT 57.203 33.333 3.32 0.00 0.00 1.82
1500 1543 1.768870 AGTACGGCTAATTGATGGCCT 59.231 47.619 3.32 0.00 43.29 5.19
1510 1553 4.018490 TGTCTAATGGTCAGTACGGCTAA 58.982 43.478 0.00 0.00 0.00 3.09
1576 1619 6.071784 TCAGGTGAAATGATCCAAATTGTGAG 60.072 38.462 0.00 0.00 0.00 3.51
1578 1621 5.865552 GTCAGGTGAAATGATCCAAATTGTG 59.134 40.000 0.00 0.00 0.00 3.33
1579 1622 5.539574 TGTCAGGTGAAATGATCCAAATTGT 59.460 36.000 0.00 0.00 0.00 2.71
1603 1646 0.405585 ACCCTGCAACAAGTATGGCT 59.594 50.000 0.00 0.00 0.00 4.75
1677 1720 0.768622 TGAACCCCAGTTGGTGGTAG 59.231 55.000 10.49 0.00 46.37 3.18
1750 1793 1.818674 AGTGGCCTTGAATTTTAGCCG 59.181 47.619 3.32 0.00 46.92 5.52
1808 1851 2.753452 AGTGCAATCCAGAAGCTCAATG 59.247 45.455 0.00 0.00 0.00 2.82
1813 1856 2.157738 GAACAGTGCAATCCAGAAGCT 58.842 47.619 0.00 0.00 0.00 3.74
1862 1905 9.646427 AATTTTATATGCACAAACCATTTACGT 57.354 25.926 0.00 0.00 0.00 3.57
1904 1947 0.843872 GGCGCAAAAACGTTGAAGAC 59.156 50.000 10.83 0.00 34.88 3.01
1984 2027 8.435931 ACCTACCATATGTCAAAGCTATGATA 57.564 34.615 1.24 0.00 0.00 2.15
2085 2130 7.988028 AGGCAAAGTAGGAAAATATAGTCACTC 59.012 37.037 0.00 0.00 0.00 3.51
2213 2258 8.109634 TCAGATCCCTTGCTTTCTAGTTTTATT 58.890 33.333 0.00 0.00 0.00 1.40
2531 2576 5.071115 AGTCATCTGGGGAGCTTTTATAGAC 59.929 44.000 0.00 0.00 0.00 2.59
2550 2595 2.836981 AGGCTGAGCTTGTTCTAGTCAT 59.163 45.455 3.72 0.00 0.00 3.06
2854 2914 2.450609 TCTAACCTGAAGGCGTGTTC 57.549 50.000 0.00 0.00 39.32 3.18
2917 2977 8.871686 AAACAAGAAAACTAACCATTAGCAAG 57.128 30.769 0.00 0.00 36.71 4.01
3210 3271 1.001378 CCAAAAGTTGCGAAGGTCCAG 60.001 52.381 0.00 0.00 0.00 3.86
3301 3362 8.511604 AACGAAATGGTCATTCTGAGAAATAT 57.488 30.769 0.00 0.00 0.00 1.28
3422 3490 2.787994 AGGAAGTCAAGAAGCACATGG 58.212 47.619 0.00 0.00 0.00 3.66
3444 3512 3.349488 CACAGCATGCAGTTATGATGG 57.651 47.619 21.98 0.00 45.94 3.51
3510 3578 9.952188 AAAGTACTGAATAAAGAAACTTGCTTC 57.048 29.630 0.00 0.00 31.74 3.86
3558 3626 4.350346 TGCAAATTCACAAGTTTCACTCG 58.650 39.130 0.00 0.00 0.00 4.18
3668 3736 7.243604 TGCAAGATATTTTTCCACCTTGATT 57.756 32.000 0.00 0.00 34.57 2.57
3705 3773 4.079970 ACGAACTAACCTGAGAGACATGA 58.920 43.478 0.00 0.00 0.00 3.07
3800 3868 1.539388 CATGCGCAACCCTTAGTTCAA 59.461 47.619 17.11 0.00 36.18 2.69
3816 3884 8.558973 AAGATAGCCATACTAGATTTTCATGC 57.441 34.615 0.00 0.00 33.29 4.06
3831 3899 8.870075 AAAAACTCTTCACTAAAGATAGCCAT 57.130 30.769 0.00 0.00 43.06 4.40
3839 3907 6.377327 TGCAGGAAAAACTCTTCACTAAAG 57.623 37.500 0.00 0.00 36.22 1.85
4094 4162 4.993028 AGGCAAAGGAAAGTATTGTGGTA 58.007 39.130 0.00 0.00 0.00 3.25
4146 4214 0.388659 TGTTTGAACATGCCAGGCAC 59.611 50.000 19.10 4.22 43.04 5.01
4338 4406 3.245052 GGGAGGAGGCTTTATATGCATGT 60.245 47.826 10.16 5.06 0.00 3.21
4363 4431 8.641498 ATGTAAATCCATACCAGATTTGATCC 57.359 34.615 8.59 0.00 42.45 3.36
4500 4568 5.344743 AGTAACACGGTGATCAGATCAAT 57.655 39.130 15.02 1.16 41.69 2.57
4538 4606 3.374745 GCATGTTCCGGAATTAAGCATG 58.625 45.455 27.87 27.87 36.35 4.06
4707 4775 4.607293 TGTCTGAACTATGACTGCTTGT 57.393 40.909 0.00 0.00 34.57 3.16
4772 4840 0.390340 TGCTAGCTTCGCTGTTGGAG 60.390 55.000 17.23 0.00 40.10 3.86
4961 5029 3.110293 TCTTCCTCGAATTCCCTGGTA 57.890 47.619 0.00 0.00 0.00 3.25
5002 5070 1.407258 CTACCTGAAGAGAAGAGCCCG 59.593 57.143 0.00 0.00 0.00 6.13
5019 5087 0.101939 GCAGGTACCACCGCTACTAC 59.898 60.000 15.94 0.00 44.90 2.73
5189 5257 3.867984 GCTCCTTTCCAGAACTCTCCTTG 60.868 52.174 0.00 0.00 0.00 3.61
5218 5286 0.773644 AACTGGGTGCTTGTCTCCAT 59.226 50.000 0.00 0.00 0.00 3.41
5414 5482 7.562088 ACTCTCCGATTTCTTTCTAGGAGTAAT 59.438 37.037 8.86 0.00 44.02 1.89
5433 5501 7.250569 ACATTTATGTAATTGCAAACTCTCCG 58.749 34.615 1.71 0.00 39.68 4.63
5771 5844 6.009589 CAGGGCATAATATATGTTTCCCACA 58.990 40.000 14.67 0.00 40.71 4.17
5803 5876 8.102676 TGAGTGATTCCCATTATATACACATGG 58.897 37.037 0.00 5.30 37.76 3.66
5804 5877 9.676861 ATGAGTGATTCCCATTATATACACATG 57.323 33.333 0.00 0.00 0.00 3.21
5805 5878 9.896645 GATGAGTGATTCCCATTATATACACAT 57.103 33.333 0.00 0.00 0.00 3.21
5806 5879 8.321353 GGATGAGTGATTCCCATTATATACACA 58.679 37.037 0.00 0.00 0.00 3.72
5807 5880 8.543774 AGGATGAGTGATTCCCATTATATACAC 58.456 37.037 0.00 0.00 32.05 2.90
5808 5881 8.685257 AGGATGAGTGATTCCCATTATATACA 57.315 34.615 0.00 0.00 32.05 2.29
5811 5884 8.923838 ACTAGGATGAGTGATTCCCATTATAT 57.076 34.615 0.00 0.00 32.05 0.86
5812 5885 8.742125 AACTAGGATGAGTGATTCCCATTATA 57.258 34.615 0.00 0.00 32.05 0.98
5813 5886 7.639062 AACTAGGATGAGTGATTCCCATTAT 57.361 36.000 0.00 0.00 32.05 1.28
5814 5887 8.561536 TTAACTAGGATGAGTGATTCCCATTA 57.438 34.615 0.00 0.00 32.05 1.90
5815 5888 5.983333 AACTAGGATGAGTGATTCCCATT 57.017 39.130 0.00 0.00 32.05 3.16
5816 5889 7.293299 TCATTAACTAGGATGAGTGATTCCCAT 59.707 37.037 0.00 0.00 32.05 4.00
5817 5890 6.615316 TCATTAACTAGGATGAGTGATTCCCA 59.385 38.462 0.00 0.00 32.05 4.37
5818 5891 7.067496 TCATTAACTAGGATGAGTGATTCCC 57.933 40.000 0.00 0.00 32.05 3.97
5908 5981 9.174166 GAACTGTTGGTATGGTATTTACTGATT 57.826 33.333 0.00 0.00 0.00 2.57
5916 5989 9.866655 AATGATATGAACTGTTGGTATGGTATT 57.133 29.630 0.00 0.00 0.00 1.89
5923 5996 8.676401 CATGTCAAATGATATGAACTGTTGGTA 58.324 33.333 13.09 0.00 43.58 3.25
5942 6015 6.364568 AGCTAGGATATACATGCATGTCAA 57.635 37.500 34.54 23.45 41.97 3.18
5945 6018 5.163364 GGCTAGCTAGGATATACATGCATGT 60.163 44.000 33.20 33.20 44.48 3.21
5956 6029 4.097418 GGGATTTGAGGCTAGCTAGGATA 58.903 47.826 22.10 0.00 0.00 2.59
6051 6124 1.001393 ACCCATTTCGCCCGAATGT 60.001 52.632 3.77 0.00 33.79 2.71
6068 6141 0.318762 ACCAACGAGGAAGAGCTGAC 59.681 55.000 0.00 0.00 41.22 3.51
6099 6172 2.548295 GGAAAAAGCGTGCCGGACA 61.548 57.895 5.05 0.00 0.00 4.02
6136 6209 4.442706 CACTACTGAAGAAACAGGTGTGT 58.557 43.478 0.00 0.00 41.59 3.72
6183 6256 2.742372 CCACGCCGGAGAACTTGG 60.742 66.667 13.83 5.00 36.56 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.