Multiple sequence alignment - TraesCS6B01G169800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G169800 chr6B 100.000 3070 0 0 1 3070 181838802 181835733 0.000000e+00 5670.0
1 TraesCS6B01G169800 chr6B 100.000 294 0 0 3273 3566 181835530 181835237 8.710000e-151 544.0
2 TraesCS6B01G169800 chr6D 92.978 2649 128 25 2 2636 97522525 97519921 0.000000e+00 3808.0
3 TraesCS6B01G169800 chr6D 100.000 41 0 0 2437 2477 97519312 97519272 3.820000e-10 76.8
4 TraesCS6B01G169800 chr7B 82.163 1452 215 31 1115 2555 704289645 704291063 0.000000e+00 1206.0
5 TraesCS6B01G169800 chr7B 80.988 1457 215 42 1114 2552 704547931 704549343 0.000000e+00 1099.0
6 TraesCS6B01G169800 chr7B 81.550 1355 208 25 1114 2462 704637418 704636100 0.000000e+00 1079.0
7 TraesCS6B01G169800 chr7B 82.729 689 105 12 1870 2552 704317443 704316763 5.090000e-168 601.0
8 TraesCS6B01G169800 chr7B 79.813 857 141 23 1116 1962 728933807 728934641 2.370000e-166 595.0
9 TraesCS6B01G169800 chr7B 78.716 888 173 15 1032 1914 704790664 704791540 2.390000e-161 579.0
10 TraesCS6B01G169800 chr7B 86.486 185 18 4 2732 2914 741620231 741620410 2.810000e-46 196.0
11 TraesCS6B01G169800 chr7D 80.833 1440 232 32 1114 2546 613661490 613660088 0.000000e+00 1090.0
12 TraesCS6B01G169800 chr7D 80.627 1435 216 41 1114 2529 613626351 613627742 0.000000e+00 1053.0
13 TraesCS6B01G169800 chr7A 80.681 1439 236 31 1114 2546 705332556 705331154 0.000000e+00 1079.0
14 TraesCS6B01G169800 chr7A 78.532 899 173 17 1032 1923 705479496 705480381 1.110000e-159 573.0
15 TraesCS6B01G169800 chr7A 81.301 615 92 14 1924 2533 706035986 706035390 8.960000e-131 477.0
16 TraesCS6B01G169800 chrUn 80.081 738 126 12 1065 1796 293162468 293161746 2.440000e-146 529.0
17 TraesCS6B01G169800 chrUn 82.287 621 92 12 1924 2544 293161530 293160928 4.080000e-144 521.0
18 TraesCS6B01G169800 chrUn 81.503 519 78 12 2026 2544 409868704 409869204 9.210000e-111 411.0
19 TraesCS6B01G169800 chr3D 90.816 294 27 0 3273 3566 277898668 277898375 9.280000e-106 394.0
20 TraesCS6B01G169800 chr3D 90.136 294 28 1 3273 3566 610111346 610111638 7.220000e-102 381.0
21 TraesCS6B01G169800 chr5A 89.619 289 29 1 3273 3561 603362407 603362694 2.020000e-97 366.0
22 TraesCS6B01G169800 chr6A 84.068 295 42 3 3273 3564 602458289 602457997 2.710000e-71 279.0
23 TraesCS6B01G169800 chr1A 76.895 554 88 27 1943 2482 436422229 436422756 9.750000e-71 278.0
24 TraesCS6B01G169800 chr1D 76.408 568 94 29 1943 2496 337218237 337218778 1.630000e-68 270.0
25 TraesCS6B01G169800 chr1D 94.186 86 5 0 2827 2912 220923543 220923458 8.030000e-27 132.0
26 TraesCS6B01G169800 chr1D 92.188 64 5 0 2734 2797 220924040 220923977 1.360000e-14 91.6
27 TraesCS6B01G169800 chr4A 89.011 182 20 0 3385 3566 578270148 578270329 3.580000e-55 226.0
28 TraesCS6B01G169800 chr4A 87.791 172 21 0 3273 3444 578269982 578270153 6.040000e-48 202.0
29 TraesCS6B01G169800 chr2B 72.527 546 113 34 1931 2459 7855847 7855322 3.710000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G169800 chr6B 181835237 181838802 3565 True 3107.0 5670 100.000 1 3566 2 chr6B.!!$R1 3565
1 TraesCS6B01G169800 chr6D 97519272 97522525 3253 True 1942.4 3808 96.489 2 2636 2 chr6D.!!$R1 2634
2 TraesCS6B01G169800 chr7B 704289645 704291063 1418 False 1206.0 1206 82.163 1115 2555 1 chr7B.!!$F1 1440
3 TraesCS6B01G169800 chr7B 704547931 704549343 1412 False 1099.0 1099 80.988 1114 2552 1 chr7B.!!$F2 1438
4 TraesCS6B01G169800 chr7B 704636100 704637418 1318 True 1079.0 1079 81.550 1114 2462 1 chr7B.!!$R2 1348
5 TraesCS6B01G169800 chr7B 704316763 704317443 680 True 601.0 601 82.729 1870 2552 1 chr7B.!!$R1 682
6 TraesCS6B01G169800 chr7B 728933807 728934641 834 False 595.0 595 79.813 1116 1962 1 chr7B.!!$F4 846
7 TraesCS6B01G169800 chr7B 704790664 704791540 876 False 579.0 579 78.716 1032 1914 1 chr7B.!!$F3 882
8 TraesCS6B01G169800 chr7D 613660088 613661490 1402 True 1090.0 1090 80.833 1114 2546 1 chr7D.!!$R1 1432
9 TraesCS6B01G169800 chr7D 613626351 613627742 1391 False 1053.0 1053 80.627 1114 2529 1 chr7D.!!$F1 1415
10 TraesCS6B01G169800 chr7A 705331154 705332556 1402 True 1079.0 1079 80.681 1114 2546 1 chr7A.!!$R1 1432
11 TraesCS6B01G169800 chr7A 705479496 705480381 885 False 573.0 573 78.532 1032 1923 1 chr7A.!!$F1 891
12 TraesCS6B01G169800 chr7A 706035390 706035986 596 True 477.0 477 81.301 1924 2533 1 chr7A.!!$R2 609
13 TraesCS6B01G169800 chrUn 293160928 293162468 1540 True 525.0 529 81.184 1065 2544 2 chrUn.!!$R1 1479
14 TraesCS6B01G169800 chrUn 409868704 409869204 500 False 411.0 411 81.503 2026 2544 1 chrUn.!!$F1 518
15 TraesCS6B01G169800 chr1A 436422229 436422756 527 False 278.0 278 76.895 1943 2482 1 chr1A.!!$F1 539
16 TraesCS6B01G169800 chr1D 337218237 337218778 541 False 270.0 270 76.408 1943 2496 1 chr1D.!!$F1 553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
486 495 0.967380 ATTTTGCTTGAGGGCCCGAG 60.967 55.000 18.44 16.93 0.00 4.63 F
499 508 1.538419 GGCCCGAGTGTACATTAGCTC 60.538 57.143 0.00 0.00 0.00 4.09 F
2384 2551 1.707427 GAGGATGTGCCCAGGGATAAT 59.293 52.381 10.89 0.00 37.37 1.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2268 2427 1.219393 GAACCTCTCCGGCCTGAAG 59.781 63.158 0.00 0.36 35.61 3.02 R
2546 2719 5.867330 ACAGCTACATACGAGTACTAGGAT 58.133 41.667 7.94 1.01 0.00 3.24 R
3284 3479 0.178918 GGGGGAGGAGATCTAGGTGG 60.179 65.000 0.00 0.00 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.654105 GCAGTTCCGTCTCATGTAACG 59.346 52.381 13.33 13.33 38.58 3.18
75 76 2.456119 GCATGGCAGTTCCGTCTCG 61.456 63.158 0.00 0.00 37.80 4.04
79 80 1.174078 TGGCAGTTCCGTCTCGTGTA 61.174 55.000 0.00 0.00 37.80 2.90
130 131 5.506649 GCAACTTTCTTTACCGTTGGATGAA 60.507 40.000 0.00 0.00 37.72 2.57
181 182 2.747396 TTTGTGAGCATGCCAATTCC 57.253 45.000 15.66 1.18 0.00 3.01
184 185 3.084536 TGTGAGCATGCCAATTCCTAA 57.915 42.857 15.66 0.00 0.00 2.69
192 193 6.000219 AGCATGCCAATTCCTAACTATGTAG 59.000 40.000 15.66 0.00 0.00 2.74
193 194 5.997746 GCATGCCAATTCCTAACTATGTAGA 59.002 40.000 6.36 0.00 0.00 2.59
215 216 9.077674 GTAGACATTTTCCTATCATATAGTGCG 57.922 37.037 0.00 0.00 0.00 5.34
252 253 8.065473 TGATGCAACATTTACCATGTTCTAAT 57.935 30.769 0.00 0.00 39.94 1.73
282 283 5.888105 AGCATGTCAATTCTTCTATGTTGC 58.112 37.500 0.00 0.00 0.00 4.17
283 284 5.416639 AGCATGTCAATTCTTCTATGTTGCA 59.583 36.000 0.00 0.00 0.00 4.08
303 304 3.289836 CATTGCACCATGTCAATCCCTA 58.710 45.455 0.00 0.00 31.15 3.53
304 305 3.448093 TTGCACCATGTCAATCCCTAA 57.552 42.857 0.00 0.00 0.00 2.69
305 306 3.448093 TGCACCATGTCAATCCCTAAA 57.552 42.857 0.00 0.00 0.00 1.85
321 322 8.805175 CAATCCCTAAACAAATGCCATGATATA 58.195 33.333 0.00 0.00 0.00 0.86
370 371 4.928601 CCATAACATGGCATTTCACTCTG 58.071 43.478 0.00 0.00 44.70 3.35
371 372 4.400251 CCATAACATGGCATTTCACTCTGT 59.600 41.667 0.00 0.00 44.70 3.41
372 373 5.589855 CCATAACATGGCATTTCACTCTGTA 59.410 40.000 0.00 0.00 44.70 2.74
373 374 6.238566 CCATAACATGGCATTTCACTCTGTAG 60.239 42.308 0.00 0.00 44.70 2.74
374 375 3.012518 ACATGGCATTTCACTCTGTAGC 58.987 45.455 0.00 0.00 0.00 3.58
375 376 1.725641 TGGCATTTCACTCTGTAGCG 58.274 50.000 0.00 0.00 0.00 4.26
386 390 1.398390 CTCTGTAGCGTGGCAAATTCC 59.602 52.381 0.00 0.00 0.00 3.01
413 417 6.861065 TGTGGAAGTAAAGAAGATGTTGAC 57.139 37.500 0.00 0.00 0.00 3.18
467 475 2.672714 GCTACTGACATGAACGTCACA 58.327 47.619 0.00 0.00 40.94 3.58
476 484 4.043750 ACATGAACGTCACATTTTGCTTG 58.956 39.130 0.00 0.00 0.00 4.01
481 490 1.666888 CGTCACATTTTGCTTGAGGGC 60.667 52.381 0.00 0.00 0.00 5.19
486 495 0.967380 ATTTTGCTTGAGGGCCCGAG 60.967 55.000 18.44 16.93 0.00 4.63
487 496 2.351924 TTTTGCTTGAGGGCCCGAGT 62.352 55.000 18.44 0.00 0.00 4.18
499 508 1.538419 GGCCCGAGTGTACATTAGCTC 60.538 57.143 0.00 0.00 0.00 4.09
501 510 2.544069 GCCCGAGTGTACATTAGCTCTC 60.544 54.545 0.00 0.00 0.00 3.20
511 520 8.344098 AGTGTACATTAGCTCTCTATTAACGTC 58.656 37.037 0.00 0.00 0.00 4.34
518 527 5.682659 AGCTCTCTATTAACGTCTACTCCA 58.317 41.667 0.00 0.00 0.00 3.86
520 529 6.428771 AGCTCTCTATTAACGTCTACTCCATC 59.571 42.308 0.00 0.00 0.00 3.51
568 577 3.010138 TGGTTCAACTTAGGAATGGAGGG 59.990 47.826 0.00 0.00 0.00 4.30
569 578 3.265995 GGTTCAACTTAGGAATGGAGGGA 59.734 47.826 0.00 0.00 0.00 4.20
570 579 4.518249 GTTCAACTTAGGAATGGAGGGAG 58.482 47.826 0.00 0.00 0.00 4.30
571 580 3.803340 TCAACTTAGGAATGGAGGGAGT 58.197 45.455 0.00 0.00 0.00 3.85
572 581 4.955335 TCAACTTAGGAATGGAGGGAGTA 58.045 43.478 0.00 0.00 0.00 2.59
573 582 4.715297 TCAACTTAGGAATGGAGGGAGTAC 59.285 45.833 0.00 0.00 0.00 2.73
575 584 4.695606 ACTTAGGAATGGAGGGAGTACAA 58.304 43.478 0.00 0.00 0.00 2.41
576 585 4.470304 ACTTAGGAATGGAGGGAGTACAAC 59.530 45.833 0.00 0.00 0.00 3.32
577 586 3.207044 AGGAATGGAGGGAGTACAACT 57.793 47.619 0.00 0.00 0.00 3.16
581 590 4.099727 GGAATGGAGGGAGTACAACTAGAC 59.900 50.000 0.00 0.00 0.00 2.59
582 591 3.820195 TGGAGGGAGTACAACTAGACA 57.180 47.619 0.00 0.00 0.00 3.41
583 592 4.332683 TGGAGGGAGTACAACTAGACAT 57.667 45.455 0.00 0.00 0.00 3.06
584 593 4.023980 TGGAGGGAGTACAACTAGACATG 58.976 47.826 0.00 0.00 0.00 3.21
587 596 5.655532 GGAGGGAGTACAACTAGACATGTTA 59.344 44.000 0.00 0.00 0.00 2.41
588 597 6.405619 GGAGGGAGTACAACTAGACATGTTAC 60.406 46.154 0.00 0.00 0.00 2.50
590 599 6.724905 AGGGAGTACAACTAGACATGTTACTT 59.275 38.462 0.00 0.00 0.00 2.24
591 600 6.812160 GGGAGTACAACTAGACATGTTACTTG 59.188 42.308 0.00 2.59 0.00 3.16
593 602 7.328737 GGAGTACAACTAGACATGTTACTTGTG 59.671 40.741 8.62 7.99 0.00 3.33
594 603 7.948357 AGTACAACTAGACATGTTACTTGTGA 58.052 34.615 8.62 0.00 0.00 3.58
595 604 8.585881 AGTACAACTAGACATGTTACTTGTGAT 58.414 33.333 8.62 0.65 0.00 3.06
596 605 9.204570 GTACAACTAGACATGTTACTTGTGATT 57.795 33.333 8.62 0.00 0.00 2.57
597 606 8.677148 ACAACTAGACATGTTACTTGTGATTT 57.323 30.769 8.62 0.00 0.00 2.17
598 607 8.559536 ACAACTAGACATGTTACTTGTGATTTG 58.440 33.333 8.62 9.07 0.00 2.32
599 608 7.133891 ACTAGACATGTTACTTGTGATTTGC 57.866 36.000 8.62 0.00 0.00 3.68
600 609 6.710295 ACTAGACATGTTACTTGTGATTTGCA 59.290 34.615 8.62 0.00 0.00 4.08
601 610 6.389830 AGACATGTTACTTGTGATTTGCAA 57.610 33.333 8.62 0.00 0.00 4.08
602 611 6.804677 AGACATGTTACTTGTGATTTGCAAA 58.195 32.000 15.44 15.44 0.00 3.68
604 613 7.763528 AGACATGTTACTTGTGATTTGCAAAAA 59.236 29.630 17.19 4.82 0.00 1.94
702 711 9.803315 AGAAAAGTTAGACCAGAAAAATTTGTC 57.197 29.630 0.00 0.00 0.00 3.18
703 712 9.581099 GAAAAGTTAGACCAGAAAAATTTGTCA 57.419 29.630 10.98 0.00 0.00 3.58
776 785 8.710749 ATACATATTTGCCAAGATGGTTACAT 57.289 30.769 9.64 0.00 40.46 2.29
939 948 3.556843 CCGCTACCTAGTACTCCTACCTC 60.557 56.522 0.00 0.00 0.00 3.85
1007 1016 2.203070 CTACCCAGCCATGGCGAC 60.203 66.667 30.50 5.30 46.19 5.19
1014 1023 3.134127 GCCATGGCGACCCAAGAC 61.134 66.667 23.48 0.00 46.14 3.01
1021 1030 2.802792 CGACCCAAGACGCGGATA 59.197 61.111 12.47 0.00 0.00 2.59
1068 1077 2.116238 GCCACCATCTTAGTACTCCCA 58.884 52.381 0.00 0.00 0.00 4.37
1368 1377 2.584391 GCTCACCAGGGACGGTCTT 61.584 63.158 8.23 0.00 37.07 3.01
1413 1422 4.193334 CACTGGCGCGAGATCCGA 62.193 66.667 26.95 0.00 41.76 4.55
1516 1525 2.503158 CATCCGTCGTTGCGTCGA 60.503 61.111 9.37 0.00 40.28 4.20
1552 1561 4.681978 AGCCCGTGAACGTCAGCC 62.682 66.667 1.75 0.00 37.74 4.85
1553 1562 4.681978 GCCCGTGAACGTCAGCCT 62.682 66.667 1.75 0.00 37.74 4.58
1917 1956 2.818274 GGAACCATCCGTGCGGTC 60.818 66.667 10.60 0.32 35.59 4.79
2058 2217 4.129737 GCTGGTGAGAGCCGCGTA 62.130 66.667 4.92 0.00 32.35 4.42
2297 2464 2.184579 GAGGTTCGAAGAGGCCGG 59.815 66.667 0.00 0.00 38.43 6.13
2298 2465 4.083862 AGGTTCGAAGAGGCCGGC 62.084 66.667 21.18 21.18 38.43 6.13
2384 2551 1.707427 GAGGATGTGCCCAGGGATAAT 59.293 52.381 10.89 0.00 37.37 1.28
2549 2722 1.538047 ACAGTTCATGTGCCACATCC 58.462 50.000 7.51 0.00 41.91 3.51
2550 2723 1.074405 ACAGTTCATGTGCCACATCCT 59.926 47.619 7.51 1.42 41.91 3.24
2551 2724 2.305635 ACAGTTCATGTGCCACATCCTA 59.694 45.455 7.51 0.00 41.91 2.94
2552 2725 2.941064 CAGTTCATGTGCCACATCCTAG 59.059 50.000 7.51 0.00 36.53 3.02
2553 2726 2.573462 AGTTCATGTGCCACATCCTAGT 59.427 45.455 7.51 0.00 36.53 2.57
2554 2727 3.774766 AGTTCATGTGCCACATCCTAGTA 59.225 43.478 7.51 0.00 36.53 1.82
2555 2728 3.819564 TCATGTGCCACATCCTAGTAC 57.180 47.619 7.51 0.00 36.53 2.73
2556 2729 3.374764 TCATGTGCCACATCCTAGTACT 58.625 45.455 7.51 0.00 36.53 2.73
2557 2730 3.384789 TCATGTGCCACATCCTAGTACTC 59.615 47.826 7.51 0.00 36.53 2.59
2562 2735 3.568430 TGCCACATCCTAGTACTCGTATG 59.432 47.826 0.00 4.23 0.00 2.39
2621 2794 2.279741 GTGTTATCAATCTGCGGCTCA 58.720 47.619 0.00 0.00 0.00 4.26
2657 2834 6.897259 CATTTGCAGATAGGGAAATGTTTG 57.103 37.500 10.68 0.00 45.71 2.93
2658 2835 4.454728 TTGCAGATAGGGAAATGTTTGC 57.545 40.909 0.00 0.00 0.00 3.68
2659 2836 7.616104 CATTTGCAGATAGGGAAATGTTTGCC 61.616 42.308 7.84 7.84 45.71 4.52
2666 2843 2.403259 GGGAAATGTTTGCCTTCAACG 58.597 47.619 8.57 0.00 44.30 4.10
2668 2845 3.049912 GGAAATGTTTGCCTTCAACGAC 58.950 45.455 0.00 0.00 30.75 4.34
2669 2846 2.399396 AATGTTTGCCTTCAACGACG 57.601 45.000 0.00 0.00 30.75 5.12
2670 2847 1.588674 ATGTTTGCCTTCAACGACGA 58.411 45.000 0.00 0.00 30.75 4.20
2671 2848 0.934496 TGTTTGCCTTCAACGACGAG 59.066 50.000 0.00 0.00 30.75 4.18
2672 2849 0.384353 GTTTGCCTTCAACGACGAGC 60.384 55.000 0.00 0.00 30.75 5.03
2695 2872 2.417516 CCGCCTCCGTGTCCATAG 59.582 66.667 0.00 0.00 0.00 2.23
2696 2873 2.417516 CGCCTCCGTGTCCATAGG 59.582 66.667 0.00 0.00 0.00 2.57
2697 2874 2.125326 CGCCTCCGTGTCCATAGGA 61.125 63.158 0.00 0.00 0.00 2.94
2698 2875 1.464376 CGCCTCCGTGTCCATAGGAT 61.464 60.000 0.00 0.00 32.73 3.24
2699 2876 0.759346 GCCTCCGTGTCCATAGGATT 59.241 55.000 0.00 0.00 32.73 3.01
2700 2877 1.541233 GCCTCCGTGTCCATAGGATTG 60.541 57.143 0.00 0.00 32.73 2.67
2701 2878 1.070758 CCTCCGTGTCCATAGGATTGG 59.929 57.143 0.00 0.00 38.18 3.16
2703 2880 2.170607 CTCCGTGTCCATAGGATTGGTT 59.829 50.000 0.00 0.00 38.01 3.67
2704 2881 2.169769 TCCGTGTCCATAGGATTGGTTC 59.830 50.000 0.00 0.00 38.01 3.62
2705 2882 2.170607 CCGTGTCCATAGGATTGGTTCT 59.829 50.000 0.00 0.00 38.01 3.01
2706 2883 3.370527 CCGTGTCCATAGGATTGGTTCTT 60.371 47.826 0.00 0.00 38.01 2.52
2709 2886 5.440610 GTGTCCATAGGATTGGTTCTTCAT 58.559 41.667 0.00 0.00 38.01 2.57
2710 2887 5.529060 GTGTCCATAGGATTGGTTCTTCATC 59.471 44.000 0.00 0.00 38.01 2.92
2712 2889 4.726317 TCCATAGGATTGGTTCTTCATCCA 59.274 41.667 0.00 0.00 38.01 3.41
2714 2891 5.300286 CCATAGGATTGGTTCTTCATCCAAC 59.700 44.000 0.00 0.00 44.80 3.77
2716 2893 5.779241 AGGATTGGTTCTTCATCCAACTA 57.221 39.130 0.00 0.00 44.80 2.24
2717 2894 5.749462 AGGATTGGTTCTTCATCCAACTAG 58.251 41.667 0.00 0.00 44.80 2.57
2718 2895 4.884164 GGATTGGTTCTTCATCCAACTAGG 59.116 45.833 0.00 0.00 44.80 3.02
2731 2908 5.407407 TCCAACTAGGAGTCAATCTTCAC 57.593 43.478 0.00 0.00 43.07 3.18
2732 2909 4.223032 TCCAACTAGGAGTCAATCTTCACC 59.777 45.833 0.00 0.00 43.07 4.02
2734 2911 3.791320 ACTAGGAGTCAATCTTCACCCA 58.209 45.455 0.00 0.00 0.00 4.51
2735 2912 4.168101 ACTAGGAGTCAATCTTCACCCAA 58.832 43.478 0.00 0.00 0.00 4.12
2736 2913 4.597507 ACTAGGAGTCAATCTTCACCCAAA 59.402 41.667 0.00 0.00 0.00 3.28
2737 2914 4.453480 AGGAGTCAATCTTCACCCAAAA 57.547 40.909 0.00 0.00 0.00 2.44
2738 2915 4.803452 AGGAGTCAATCTTCACCCAAAAA 58.197 39.130 0.00 0.00 0.00 1.94
2739 2916 5.397360 AGGAGTCAATCTTCACCCAAAAAT 58.603 37.500 0.00 0.00 0.00 1.82
2740 2917 5.244626 AGGAGTCAATCTTCACCCAAAAATG 59.755 40.000 0.00 0.00 0.00 2.32
2741 2918 4.886579 AGTCAATCTTCACCCAAAAATGC 58.113 39.130 0.00 0.00 0.00 3.56
2742 2919 4.590222 AGTCAATCTTCACCCAAAAATGCT 59.410 37.500 0.00 0.00 0.00 3.79
2744 2921 6.267471 AGTCAATCTTCACCCAAAAATGCTAA 59.733 34.615 0.00 0.00 0.00 3.09
2745 2922 6.928492 GTCAATCTTCACCCAAAAATGCTAAA 59.072 34.615 0.00 0.00 0.00 1.85
2746 2923 6.928492 TCAATCTTCACCCAAAAATGCTAAAC 59.072 34.615 0.00 0.00 0.00 2.01
2748 2925 3.019933 TCACCCAAAAATGCTAAACGC 57.980 42.857 0.00 0.00 39.77 4.84
2756 2933 3.047280 TGCTAAACGCACGGGCTG 61.047 61.111 8.62 3.61 45.47 4.85
2760 2937 1.149987 CTAAACGCACGGGCTGTTTA 58.850 50.000 26.37 26.37 42.39 2.01
2761 2938 0.867086 TAAACGCACGGGCTGTTTAC 59.133 50.000 25.25 0.00 42.39 2.01
2763 2940 0.033781 AACGCACGGGCTGTTTACTA 59.966 50.000 8.62 0.00 34.66 1.82
2764 2941 0.389426 ACGCACGGGCTGTTTACTAG 60.389 55.000 8.62 0.00 38.10 2.57
2765 2942 1.693083 CGCACGGGCTGTTTACTAGC 61.693 60.000 8.62 0.00 40.41 3.42
2767 2944 1.944430 GCACGGGCTGTTTACTAGCTT 60.944 52.381 0.00 0.00 40.92 3.74
2768 2945 2.423577 CACGGGCTGTTTACTAGCTTT 58.576 47.619 0.00 0.00 40.92 3.51
2769 2946 2.812011 CACGGGCTGTTTACTAGCTTTT 59.188 45.455 0.00 0.00 40.92 2.27
2770 2947 3.998341 CACGGGCTGTTTACTAGCTTTTA 59.002 43.478 0.00 0.00 40.92 1.52
2771 2948 3.999001 ACGGGCTGTTTACTAGCTTTTAC 59.001 43.478 0.00 0.00 40.92 2.01
2772 2949 3.061697 CGGGCTGTTTACTAGCTTTTACG 59.938 47.826 0.00 0.00 40.92 3.18
2773 2950 3.373130 GGGCTGTTTACTAGCTTTTACGG 59.627 47.826 0.00 0.00 40.92 4.02
2774 2951 3.373130 GGCTGTTTACTAGCTTTTACGGG 59.627 47.826 0.00 0.00 40.92 5.28
2775 2952 3.181513 GCTGTTTACTAGCTTTTACGGGC 60.182 47.826 0.00 0.00 38.14 6.13
2777 2954 3.998341 TGTTTACTAGCTTTTACGGGCTG 59.002 43.478 0.00 0.00 39.31 4.85
2778 2955 2.304751 TACTAGCTTTTACGGGCTGC 57.695 50.000 0.00 0.00 39.31 5.25
2781 2958 1.666189 CTAGCTTTTACGGGCTGCTTC 59.334 52.381 0.00 0.00 39.31 3.86
2782 2959 0.960861 AGCTTTTACGGGCTGCTTCC 60.961 55.000 0.00 0.00 37.41 3.46
2783 2960 1.934220 GCTTTTACGGGCTGCTTCCC 61.934 60.000 0.00 4.02 43.02 3.97
2785 2962 0.322187 TTTTACGGGCTGCTTCCCTC 60.322 55.000 11.25 0.00 44.30 4.30
2786 2963 1.198759 TTTACGGGCTGCTTCCCTCT 61.199 55.000 11.25 0.74 44.30 3.69
2787 2964 0.324923 TTACGGGCTGCTTCCCTCTA 60.325 55.000 11.25 0.00 44.30 2.43
2788 2965 0.324923 TACGGGCTGCTTCCCTCTAA 60.325 55.000 11.25 0.00 44.30 2.10
2789 2966 1.153349 CGGGCTGCTTCCCTCTAAC 60.153 63.158 11.25 0.00 44.30 2.34
2790 2967 1.617947 CGGGCTGCTTCCCTCTAACT 61.618 60.000 11.25 0.00 44.30 2.24
2791 2968 1.497161 GGGCTGCTTCCCTCTAACTA 58.503 55.000 0.00 0.00 43.13 2.24
2793 2970 2.238898 GGGCTGCTTCCCTCTAACTAAA 59.761 50.000 0.00 0.00 43.13 1.85
2794 2971 3.271729 GGCTGCTTCCCTCTAACTAAAC 58.728 50.000 0.00 0.00 0.00 2.01
2795 2972 3.271729 GCTGCTTCCCTCTAACTAAACC 58.728 50.000 0.00 0.00 0.00 3.27
2796 2973 3.055021 GCTGCTTCCCTCTAACTAAACCT 60.055 47.826 0.00 0.00 0.00 3.50
2797 2974 4.508662 CTGCTTCCCTCTAACTAAACCTG 58.491 47.826 0.00 0.00 0.00 4.00
2798 2975 3.271729 GCTTCCCTCTAACTAAACCTGC 58.728 50.000 0.00 0.00 0.00 4.85
2799 2976 3.875125 CTTCCCTCTAACTAAACCTGCC 58.125 50.000 0.00 0.00 0.00 4.85
2800 2977 2.193993 TCCCTCTAACTAAACCTGCCC 58.806 52.381 0.00 0.00 0.00 5.36
2802 2979 1.212195 CCTCTAACTAAACCTGCCCCC 59.788 57.143 0.00 0.00 0.00 5.40
2818 2995 3.911719 CCCCCTCCCTGATTTTCAG 57.088 57.895 0.00 0.00 43.91 3.02
2826 3003 2.183409 CTGATTTTCAGGCGGGTGG 58.817 57.895 0.00 0.00 40.71 4.61
2841 3018 2.696125 TGGGGCCCAATCTCTCCC 60.696 66.667 26.55 2.47 38.03 4.30
2843 3020 2.368878 GGGCCCAATCTCTCCCCT 60.369 66.667 19.95 0.00 32.60 4.79
2844 3021 2.009302 GGGCCCAATCTCTCCCCTT 61.009 63.158 19.95 0.00 32.60 3.95
2845 3022 0.697854 GGGCCCAATCTCTCCCCTTA 60.698 60.000 19.95 0.00 32.60 2.69
2847 3024 1.783365 GGCCCAATCTCTCCCCTTAAT 59.217 52.381 0.00 0.00 0.00 1.40
2848 3025 2.224892 GGCCCAATCTCTCCCCTTAATC 60.225 54.545 0.00 0.00 0.00 1.75
2850 3027 3.056080 CCCAATCTCTCCCCTTAATCCA 58.944 50.000 0.00 0.00 0.00 3.41
2852 3029 4.106987 CCCAATCTCTCCCCTTAATCCAAT 59.893 45.833 0.00 0.00 0.00 3.16
2853 3030 5.320277 CCAATCTCTCCCCTTAATCCAATC 58.680 45.833 0.00 0.00 0.00 2.67
2854 3031 5.163055 CCAATCTCTCCCCTTAATCCAATCA 60.163 44.000 0.00 0.00 0.00 2.57
2855 3032 5.839517 ATCTCTCCCCTTAATCCAATCAG 57.160 43.478 0.00 0.00 0.00 2.90
2856 3033 3.976654 TCTCTCCCCTTAATCCAATCAGG 59.023 47.826 0.00 0.00 39.47 3.86
2858 3035 1.499007 TCCCCTTAATCCAATCAGGCC 59.501 52.381 0.00 0.00 37.29 5.19
2859 3036 1.481242 CCCCTTAATCCAATCAGGCCC 60.481 57.143 0.00 0.00 37.29 5.80
2864 3041 1.607225 AATCCAATCAGGCCCTACCA 58.393 50.000 0.00 0.00 43.14 3.25
2866 3043 0.623723 TCCAATCAGGCCCTACCAAC 59.376 55.000 0.00 0.00 43.14 3.77
2867 3044 0.625849 CCAATCAGGCCCTACCAACT 59.374 55.000 0.00 0.00 43.14 3.16
2868 3045 1.408822 CCAATCAGGCCCTACCAACTC 60.409 57.143 0.00 0.00 43.14 3.01
2869 3046 1.281867 CAATCAGGCCCTACCAACTCA 59.718 52.381 0.00 0.00 43.14 3.41
2870 3047 1.207791 ATCAGGCCCTACCAACTCAG 58.792 55.000 0.00 0.00 43.14 3.35
2871 3048 0.116342 TCAGGCCCTACCAACTCAGA 59.884 55.000 0.00 0.00 43.14 3.27
2872 3049 0.250513 CAGGCCCTACCAACTCAGAC 59.749 60.000 0.00 0.00 43.14 3.51
2873 3050 0.117340 AGGCCCTACCAACTCAGACT 59.883 55.000 0.00 0.00 43.14 3.24
2875 3052 1.267121 GCCCTACCAACTCAGACTCA 58.733 55.000 0.00 0.00 0.00 3.41
2877 3054 2.530701 CCCTACCAACTCAGACTCACT 58.469 52.381 0.00 0.00 0.00 3.41
2878 3055 2.494073 CCCTACCAACTCAGACTCACTC 59.506 54.545 0.00 0.00 0.00 3.51
2880 3057 0.962489 ACCAACTCAGACTCACTCCG 59.038 55.000 0.00 0.00 0.00 4.63
2881 3058 0.962489 CCAACTCAGACTCACTCCGT 59.038 55.000 0.00 0.00 0.00 4.69
2882 3059 2.160205 CCAACTCAGACTCACTCCGTA 58.840 52.381 0.00 0.00 0.00 4.02
2883 3060 2.557056 CCAACTCAGACTCACTCCGTAA 59.443 50.000 0.00 0.00 0.00 3.18
2884 3061 3.005472 CCAACTCAGACTCACTCCGTAAA 59.995 47.826 0.00 0.00 0.00 2.01
2885 3062 4.500887 CCAACTCAGACTCACTCCGTAAAA 60.501 45.833 0.00 0.00 0.00 1.52
2886 3063 4.506886 ACTCAGACTCACTCCGTAAAAG 57.493 45.455 0.00 0.00 0.00 2.27
2887 3064 3.256136 ACTCAGACTCACTCCGTAAAAGG 59.744 47.826 0.00 0.00 0.00 3.11
2888 3065 2.029290 TCAGACTCACTCCGTAAAAGGC 60.029 50.000 0.00 0.00 0.00 4.35
2889 3066 1.275573 AGACTCACTCCGTAAAAGGCC 59.724 52.381 0.00 0.00 0.00 5.19
2891 3068 0.739813 CTCACTCCGTAAAAGGCCCG 60.740 60.000 0.00 0.00 0.00 6.13
2892 3069 2.046604 ACTCCGTAAAAGGCCCGC 60.047 61.111 0.00 0.00 0.00 6.13
2893 3070 2.046700 CTCCGTAAAAGGCCCGCA 60.047 61.111 0.00 0.00 0.00 5.69
2896 3073 1.138671 CCGTAAAAGGCCCGCATTG 59.861 57.895 0.00 0.00 0.00 2.82
2897 3074 1.309499 CCGTAAAAGGCCCGCATTGA 61.309 55.000 0.00 0.00 0.00 2.57
2899 3076 0.179137 GTAAAAGGCCCGCATTGAGC 60.179 55.000 0.00 0.00 40.87 4.26
2906 3083 2.745884 CCGCATTGAGCCCGTGAA 60.746 61.111 0.00 0.00 41.38 3.18
2907 3084 2.114670 CCGCATTGAGCCCGTGAAT 61.115 57.895 0.00 0.00 41.38 2.57
2908 3085 1.063006 CGCATTGAGCCCGTGAATG 59.937 57.895 0.00 0.00 41.38 2.67
2911 3088 1.331756 GCATTGAGCCCGTGAATGTAG 59.668 52.381 0.00 0.00 37.23 2.74
2912 3089 1.331756 CATTGAGCCCGTGAATGTAGC 59.668 52.381 0.00 0.00 0.00 3.58
2913 3090 0.323302 TTGAGCCCGTGAATGTAGCA 59.677 50.000 0.00 0.00 0.00 3.49
2914 3091 0.541392 TGAGCCCGTGAATGTAGCAT 59.459 50.000 0.00 0.00 0.00 3.79
2915 3092 1.065491 TGAGCCCGTGAATGTAGCATT 60.065 47.619 0.00 0.00 0.00 3.56
2916 3093 1.331756 GAGCCCGTGAATGTAGCATTG 59.668 52.381 0.00 0.00 0.00 2.82
2917 3094 0.248621 GCCCGTGAATGTAGCATTGC 60.249 55.000 0.00 0.00 0.00 3.56
2918 3095 1.382522 CCCGTGAATGTAGCATTGCT 58.617 50.000 16.63 16.63 43.41 3.91
2919 3096 1.064505 CCCGTGAATGTAGCATTGCTG 59.935 52.381 21.31 1.48 40.10 4.41
2922 3099 3.303593 CCGTGAATGTAGCATTGCTGATC 60.304 47.826 21.31 13.08 40.10 2.92
2929 3106 2.803030 AGCATTGCTGATCTTCACCT 57.197 45.000 11.09 0.00 37.57 4.00
2934 3129 4.034975 GCATTGCTGATCTTCACCTACTTC 59.965 45.833 0.16 0.00 0.00 3.01
2935 3130 4.890158 TTGCTGATCTTCACCTACTTCA 57.110 40.909 0.00 0.00 0.00 3.02
2940 3135 7.212976 TGCTGATCTTCACCTACTTCATATTC 58.787 38.462 0.00 0.00 0.00 1.75
2947 3142 9.871238 TCTTCACCTACTTCATATTCTTACAAC 57.129 33.333 0.00 0.00 0.00 3.32
2950 3145 9.871238 TCACCTACTTCATATTCTTACAACTTC 57.129 33.333 0.00 0.00 0.00 3.01
2951 3146 9.653287 CACCTACTTCATATTCTTACAACTTCA 57.347 33.333 0.00 0.00 0.00 3.02
2952 3147 9.654663 ACCTACTTCATATTCTTACAACTTCAC 57.345 33.333 0.00 0.00 0.00 3.18
2963 3158 8.964420 TTCTTACAACTTCACTTTTGTTTCAG 57.036 30.769 0.00 0.00 37.19 3.02
2965 3160 8.788806 TCTTACAACTTCACTTTTGTTTCAGAA 58.211 29.630 0.00 0.00 37.19 3.02
2966 3161 8.964420 TTACAACTTCACTTTTGTTTCAGAAG 57.036 30.769 0.00 0.00 37.19 2.85
2967 3162 6.389906 ACAACTTCACTTTTGTTTCAGAAGG 58.610 36.000 0.00 0.00 34.79 3.46
2968 3163 4.998788 ACTTCACTTTTGTTTCAGAAGGC 58.001 39.130 0.00 0.00 34.79 4.35
2970 3165 2.357637 TCACTTTTGTTTCAGAAGGCGG 59.642 45.455 5.33 0.00 31.11 6.13
2971 3166 1.681264 ACTTTTGTTTCAGAAGGCGGG 59.319 47.619 5.33 0.00 31.11 6.13
2972 3167 1.953686 CTTTTGTTTCAGAAGGCGGGA 59.046 47.619 0.00 0.00 0.00 5.14
2973 3168 1.314730 TTTGTTTCAGAAGGCGGGAC 58.685 50.000 0.00 0.00 0.00 4.46
2975 3170 0.250295 TGTTTCAGAAGGCGGGACTG 60.250 55.000 0.00 0.00 0.00 3.51
2976 3171 1.302511 TTTCAGAAGGCGGGACTGC 60.303 57.895 0.00 0.00 0.00 4.40
2977 3172 2.050836 TTTCAGAAGGCGGGACTGCA 62.051 55.000 5.39 0.00 36.28 4.41
2978 3173 2.032528 CAGAAGGCGGGACTGCAA 59.967 61.111 5.39 0.00 36.28 4.08
2979 3174 2.032681 AGAAGGCGGGACTGCAAC 59.967 61.111 5.39 0.00 36.28 4.17
2980 3175 2.032681 GAAGGCGGGACTGCAACT 59.967 61.111 5.39 0.00 36.28 3.16
2981 3176 1.192146 AGAAGGCGGGACTGCAACTA 61.192 55.000 5.39 0.00 36.28 2.24
2982 3177 0.741221 GAAGGCGGGACTGCAACTAG 60.741 60.000 5.39 0.00 36.28 2.57
2983 3178 2.125106 GGCGGGACTGCAACTAGG 60.125 66.667 5.39 0.00 36.28 3.02
2984 3179 2.820037 GCGGGACTGCAACTAGGC 60.820 66.667 0.00 0.00 34.15 3.93
2985 3180 2.125106 CGGGACTGCAACTAGGCC 60.125 66.667 0.00 0.00 45.74 5.19
2986 3181 2.660064 CGGGACTGCAACTAGGCCT 61.660 63.158 11.78 11.78 45.74 5.19
2988 3183 0.038310 GGGACTGCAACTAGGCCTTT 59.962 55.000 12.58 0.00 45.74 3.11
2989 3184 1.168714 GGACTGCAACTAGGCCTTTG 58.831 55.000 12.58 12.31 42.96 2.77
2990 3185 1.545651 GGACTGCAACTAGGCCTTTGT 60.546 52.381 12.58 8.10 42.96 2.83
2991 3186 1.537202 GACTGCAACTAGGCCTTTGTG 59.463 52.381 12.58 7.81 0.00 3.33
2992 3187 1.142870 ACTGCAACTAGGCCTTTGTGA 59.857 47.619 12.58 0.65 0.00 3.58
2994 3189 2.161855 TGCAACTAGGCCTTTGTGATG 58.838 47.619 12.58 8.16 0.00 3.07
2995 3190 1.474077 GCAACTAGGCCTTTGTGATGG 59.526 52.381 12.58 3.35 0.00 3.51
3002 3197 0.817654 GCCTTTGTGATGGCCTAACC 59.182 55.000 3.32 0.00 43.11 2.85
3003 3198 1.616994 GCCTTTGTGATGGCCTAACCT 60.617 52.381 3.32 0.00 43.11 3.50
3006 3201 1.544724 TTGTGATGGCCTAACCTTGC 58.455 50.000 3.32 0.00 40.22 4.01
3007 3202 0.676466 TGTGATGGCCTAACCTTGCG 60.676 55.000 3.32 0.00 40.22 4.85
3008 3203 0.392461 GTGATGGCCTAACCTTGCGA 60.392 55.000 3.32 0.00 40.22 5.10
3009 3204 0.107703 TGATGGCCTAACCTTGCGAG 60.108 55.000 3.32 0.00 40.22 5.03
3010 3205 0.107654 GATGGCCTAACCTTGCGAGT 60.108 55.000 3.32 0.00 40.22 4.18
3011 3206 0.107654 ATGGCCTAACCTTGCGAGTC 60.108 55.000 3.32 0.00 40.22 3.36
3012 3207 1.449778 GGCCTAACCTTGCGAGTCC 60.450 63.158 0.00 0.00 34.51 3.85
3013 3208 1.810030 GCCTAACCTTGCGAGTCCG 60.810 63.158 0.00 0.00 39.16 4.79
3014 3209 1.590147 CCTAACCTTGCGAGTCCGT 59.410 57.895 0.00 0.00 38.24 4.69
3015 3210 0.813184 CCTAACCTTGCGAGTCCGTA 59.187 55.000 0.00 0.00 38.24 4.02
3016 3211 1.203052 CCTAACCTTGCGAGTCCGTAA 59.797 52.381 0.00 0.00 38.03 3.18
3017 3212 2.159142 CCTAACCTTGCGAGTCCGTAAT 60.159 50.000 0.00 0.00 39.50 1.89
3018 3213 3.067180 CCTAACCTTGCGAGTCCGTAATA 59.933 47.826 0.00 0.00 39.50 0.98
3019 3214 2.865343 ACCTTGCGAGTCCGTAATAG 57.135 50.000 0.00 0.00 39.50 1.73
3023 3218 3.550678 CCTTGCGAGTCCGTAATAGAAAC 59.449 47.826 0.00 0.00 39.50 2.78
3024 3219 4.421948 CTTGCGAGTCCGTAATAGAAACT 58.578 43.478 0.00 0.00 39.50 2.66
3025 3220 4.025015 TGCGAGTCCGTAATAGAAACTC 57.975 45.455 0.00 0.00 38.24 3.01
3026 3221 3.441222 TGCGAGTCCGTAATAGAAACTCA 59.559 43.478 0.00 0.00 36.91 3.41
3027 3222 3.790288 GCGAGTCCGTAATAGAAACTCAC 59.210 47.826 0.00 0.00 36.91 3.51
3029 3224 4.349501 GAGTCCGTAATAGAAACTCACCG 58.650 47.826 0.00 0.00 37.04 4.94
3030 3225 3.129988 AGTCCGTAATAGAAACTCACCGG 59.870 47.826 0.00 0.00 35.63 5.28
3031 3226 2.428171 TCCGTAATAGAAACTCACCGGG 59.572 50.000 6.32 0.00 35.08 5.73
3032 3227 2.482490 CCGTAATAGAAACTCACCGGGG 60.482 54.545 6.32 0.00 0.00 5.73
3033 3228 2.167075 CGTAATAGAAACTCACCGGGGT 59.833 50.000 2.12 0.00 0.00 4.95
3034 3229 2.781681 AATAGAAACTCACCGGGGTG 57.218 50.000 11.66 11.66 46.64 4.61
3043 3238 2.833957 ACCGGGGTGAAACAGACC 59.166 61.111 6.32 0.00 39.98 3.85
3045 3240 1.003718 CCGGGGTGAAACAGACCTC 60.004 63.158 0.00 0.00 39.98 3.85
3046 3241 4.695560 GGGGTGAAACAGACCTCG 57.304 61.111 0.00 0.00 39.98 4.63
3047 3242 2.055299 GGGGTGAAACAGACCTCGA 58.945 57.895 0.00 0.00 39.98 4.04
3048 3243 0.395312 GGGGTGAAACAGACCTCGAA 59.605 55.000 0.00 0.00 39.98 3.71
3049 3244 1.003233 GGGGTGAAACAGACCTCGAAT 59.997 52.381 0.00 0.00 39.98 3.34
3050 3245 2.076863 GGGTGAAACAGACCTCGAATG 58.923 52.381 0.00 0.00 39.98 2.67
3052 3247 2.737252 GGTGAAACAGACCTCGAATGTC 59.263 50.000 6.64 6.64 39.98 3.06
3053 3248 2.737252 GTGAAACAGACCTCGAATGTCC 59.263 50.000 10.29 0.00 36.32 4.02
3054 3249 2.367241 TGAAACAGACCTCGAATGTCCA 59.633 45.455 10.29 0.50 33.09 4.02
3055 3250 3.181459 TGAAACAGACCTCGAATGTCCAA 60.181 43.478 10.29 0.00 33.09 3.53
3056 3251 2.457366 ACAGACCTCGAATGTCCAAC 57.543 50.000 10.29 0.00 33.09 3.77
3057 3252 1.691976 ACAGACCTCGAATGTCCAACA 59.308 47.619 10.29 0.00 33.09 3.33
3058 3253 2.303022 ACAGACCTCGAATGTCCAACAT 59.697 45.455 10.29 0.00 41.31 2.71
3059 3254 2.932614 CAGACCTCGAATGTCCAACATC 59.067 50.000 10.29 0.00 37.97 3.06
3060 3255 2.093447 AGACCTCGAATGTCCAACATCC 60.093 50.000 10.29 0.00 37.97 3.51
3061 3256 1.065418 ACCTCGAATGTCCAACATCCC 60.065 52.381 0.00 0.00 37.97 3.85
3062 3257 1.668419 CTCGAATGTCCAACATCCCC 58.332 55.000 0.00 0.00 37.97 4.81
3063 3258 0.254747 TCGAATGTCCAACATCCCCC 59.745 55.000 0.00 0.00 37.97 5.40
3293 3488 3.917760 GAGCGCCGCCACCTAGAT 61.918 66.667 4.98 0.00 0.00 1.98
3294 3489 3.850095 GAGCGCCGCCACCTAGATC 62.850 68.421 4.98 0.00 0.00 2.75
3295 3490 3.917760 GCGCCGCCACCTAGATCT 61.918 66.667 0.00 0.00 0.00 2.75
3296 3491 2.336809 CGCCGCCACCTAGATCTC 59.663 66.667 0.00 0.00 0.00 2.75
3297 3492 2.737830 GCCGCCACCTAGATCTCC 59.262 66.667 0.00 0.00 0.00 3.71
3298 3493 1.834822 GCCGCCACCTAGATCTCCT 60.835 63.158 0.00 0.00 0.00 3.69
3299 3494 1.811645 GCCGCCACCTAGATCTCCTC 61.812 65.000 0.00 0.00 0.00 3.71
3300 3495 1.182385 CCGCCACCTAGATCTCCTCC 61.182 65.000 0.00 0.00 0.00 4.30
3301 3496 1.182385 CGCCACCTAGATCTCCTCCC 61.182 65.000 0.00 0.00 0.00 4.30
3302 3497 0.834261 GCCACCTAGATCTCCTCCCC 60.834 65.000 0.00 0.00 0.00 4.81
3303 3498 0.178918 CCACCTAGATCTCCTCCCCC 60.179 65.000 0.00 0.00 0.00 5.40
3329 3524 3.827898 CCGCCACTCGAGGAGGTC 61.828 72.222 22.31 15.29 42.97 3.85
3385 3580 4.856607 CGAGGCCTTCGTCGCTCC 62.857 72.222 6.77 0.00 44.27 4.70
3386 3581 4.856607 GAGGCCTTCGTCGCTCCG 62.857 72.222 6.77 0.00 0.00 4.63
3388 3583 4.736896 GGCCTTCGTCGCTCCGTT 62.737 66.667 0.00 0.00 0.00 4.44
3389 3584 3.179939 GCCTTCGTCGCTCCGTTC 61.180 66.667 0.00 0.00 0.00 3.95
3390 3585 2.506438 CCTTCGTCGCTCCGTTCC 60.506 66.667 0.00 0.00 0.00 3.62
3391 3586 2.506438 CTTCGTCGCTCCGTTCCC 60.506 66.667 0.00 0.00 0.00 3.97
3392 3587 4.409218 TTCGTCGCTCCGTTCCCG 62.409 66.667 0.00 0.00 0.00 5.14
3394 3589 4.409218 CGTCGCTCCGTTCCCGAA 62.409 66.667 0.00 0.00 35.63 4.30
3395 3590 2.506438 GTCGCTCCGTTCCCGAAG 60.506 66.667 0.00 0.00 35.63 3.79
3396 3591 2.674033 TCGCTCCGTTCCCGAAGA 60.674 61.111 0.00 0.00 35.63 2.87
3397 3592 2.050350 TCGCTCCGTTCCCGAAGAT 61.050 57.895 0.00 0.00 35.63 2.40
3398 3593 1.589196 CGCTCCGTTCCCGAAGATC 60.589 63.158 0.00 0.00 35.63 2.75
3399 3594 1.817209 GCTCCGTTCCCGAAGATCT 59.183 57.895 0.00 0.00 35.63 2.75
3400 3595 0.528684 GCTCCGTTCCCGAAGATCTG 60.529 60.000 0.00 0.00 35.63 2.90
3401 3596 0.103208 CTCCGTTCCCGAAGATCTGG 59.897 60.000 0.00 0.00 35.63 3.86
3402 3597 0.323999 TCCGTTCCCGAAGATCTGGA 60.324 55.000 0.00 0.00 35.63 3.86
3403 3598 0.753262 CCGTTCCCGAAGATCTGGAT 59.247 55.000 0.00 0.00 29.76 3.41
3404 3599 1.269831 CCGTTCCCGAAGATCTGGATC 60.270 57.143 0.00 2.63 35.57 3.36
3405 3600 1.269831 CGTTCCCGAAGATCTGGATCC 60.270 57.143 4.20 4.20 35.80 3.36
3406 3601 2.043227 GTTCCCGAAGATCTGGATCCT 58.957 52.381 14.23 0.00 38.58 3.24
3407 3602 2.002505 TCCCGAAGATCTGGATCCTC 57.997 55.000 14.23 1.93 38.58 3.71
3408 3603 0.600557 CCCGAAGATCTGGATCCTCG 59.399 60.000 18.93 18.93 46.04 4.63
3410 3605 0.600557 CGAAGATCTGGATCCTCGGG 59.399 60.000 18.39 0.92 44.00 5.14
3411 3606 0.972883 GAAGATCTGGATCCTCGGGG 59.027 60.000 14.23 0.00 38.58 5.73
3412 3607 0.266152 AAGATCTGGATCCTCGGGGT 59.734 55.000 14.23 0.00 38.58 4.95
3413 3608 0.470833 AGATCTGGATCCTCGGGGTG 60.471 60.000 14.23 0.00 38.58 4.61
3414 3609 1.460305 ATCTGGATCCTCGGGGTGG 60.460 63.158 14.23 0.00 0.00 4.61
3415 3610 3.866582 CTGGATCCTCGGGGTGGC 61.867 72.222 14.23 0.00 0.00 5.01
3454 3649 4.811761 GCCGTTCGCGCATTGGAC 62.812 66.667 8.75 0.00 39.70 4.02
3455 3650 3.418913 CCGTTCGCGCATTGGACA 61.419 61.111 8.75 0.00 39.70 4.02
3456 3651 2.096406 CGTTCGCGCATTGGACAG 59.904 61.111 8.75 0.00 0.00 3.51
3457 3652 2.667318 CGTTCGCGCATTGGACAGT 61.667 57.895 8.75 0.00 0.00 3.55
3458 3653 1.154413 GTTCGCGCATTGGACAGTG 60.154 57.895 8.75 0.00 0.00 3.66
3459 3654 1.596752 TTCGCGCATTGGACAGTGT 60.597 52.632 8.75 0.00 0.00 3.55
3460 3655 1.840630 TTCGCGCATTGGACAGTGTG 61.841 55.000 8.75 4.28 0.00 3.82
3461 3656 2.126734 GCGCATTGGACAGTGTGC 60.127 61.111 15.68 15.68 44.80 4.57
3463 3658 3.343972 GCATTGGACAGTGTGCGT 58.656 55.556 10.41 0.00 0.00 5.24
3464 3659 1.081906 GCATTGGACAGTGTGCGTG 60.082 57.895 10.41 12.11 0.00 5.34
3465 3660 1.575922 CATTGGACAGTGTGCGTGG 59.424 57.895 10.41 0.00 0.00 4.94
3466 3661 1.600636 ATTGGACAGTGTGCGTGGG 60.601 57.895 10.41 0.00 0.00 4.61
3467 3662 3.765894 TTGGACAGTGTGCGTGGGG 62.766 63.158 10.41 0.00 0.00 4.96
3485 3680 4.500116 GCTCTGACCGGCGTCCTC 62.500 72.222 6.01 0.00 38.32 3.71
3486 3681 4.180946 CTCTGACCGGCGTCCTCG 62.181 72.222 6.01 0.00 38.32 4.63
3487 3682 4.710167 TCTGACCGGCGTCCTCGA 62.710 66.667 6.01 0.00 38.32 4.04
3488 3683 4.477975 CTGACCGGCGTCCTCGAC 62.478 72.222 6.01 0.00 42.36 4.20
3541 3736 4.351054 CAGCGTGGGGGCCTTCTT 62.351 66.667 0.84 0.00 0.00 2.52
3542 3737 4.035102 AGCGTGGGGGCCTTCTTC 62.035 66.667 0.84 0.00 0.00 2.87
3544 3739 3.330720 CGTGGGGGCCTTCTTCCT 61.331 66.667 0.84 0.00 0.00 3.36
3545 3740 2.677848 GTGGGGGCCTTCTTCCTC 59.322 66.667 0.84 0.00 0.00 3.71
3546 3741 3.009115 TGGGGGCCTTCTTCCTCG 61.009 66.667 0.84 0.00 0.00 4.63
3547 3742 4.491409 GGGGGCCTTCTTCCTCGC 62.491 72.222 0.84 0.00 0.00 5.03
3548 3743 4.491409 GGGGCCTTCTTCCTCGCC 62.491 72.222 0.84 0.00 40.85 5.54
3549 3744 3.717294 GGGCCTTCTTCCTCGCCA 61.717 66.667 0.84 0.00 43.50 5.69
3550 3745 2.124942 GGCCTTCTTCCTCGCCAG 60.125 66.667 0.00 0.00 41.25 4.85
3551 3746 2.660064 GGCCTTCTTCCTCGCCAGA 61.660 63.158 0.00 0.00 41.25 3.86
3552 3747 1.524482 GCCTTCTTCCTCGCCAGAT 59.476 57.895 0.00 0.00 0.00 2.90
3553 3748 0.531753 GCCTTCTTCCTCGCCAGATC 60.532 60.000 0.00 0.00 0.00 2.75
3554 3749 1.118838 CCTTCTTCCTCGCCAGATCT 58.881 55.000 0.00 0.00 0.00 2.75
3555 3750 1.202510 CCTTCTTCCTCGCCAGATCTG 60.203 57.143 16.24 16.24 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.798337 GCTATGCCACACACAATAATTGC 59.202 43.478 0.00 0.00 0.00 3.56
7 8 1.879380 GAACTGCTATGCCACACACAA 59.121 47.619 0.00 0.00 0.00 3.33
15 16 0.175760 TGAGACGGAACTGCTATGCC 59.824 55.000 0.00 0.00 0.00 4.40
41 42 2.223249 CCATGCTACACACGGTAATTGC 60.223 50.000 0.00 0.00 0.00 3.56
93 94 5.046910 AGAAAGTTGCCACACATATTTCG 57.953 39.130 0.00 0.00 37.79 3.46
192 193 6.183360 GCCGCACTATATGATAGGAAAATGTC 60.183 42.308 0.00 0.00 0.00 3.06
193 194 5.643777 GCCGCACTATATGATAGGAAAATGT 59.356 40.000 0.00 0.00 0.00 2.71
206 207 4.281941 TCAGAGAGAATTGCCGCACTATAT 59.718 41.667 0.00 0.00 0.00 0.86
215 216 2.751259 TGTTGCATCAGAGAGAATTGCC 59.249 45.455 0.00 0.00 32.47 4.52
279 280 2.353903 GGATTGACATGGTGCAATGCAA 60.354 45.455 10.44 0.00 41.47 4.08
280 281 1.205179 GGATTGACATGGTGCAATGCA 59.795 47.619 2.72 2.72 40.94 3.96
281 282 1.472026 GGGATTGACATGGTGCAATGC 60.472 52.381 16.02 16.02 40.66 3.56
282 283 2.104967 AGGGATTGACATGGTGCAATG 58.895 47.619 13.24 0.00 35.05 2.82
283 284 2.537633 AGGGATTGACATGGTGCAAT 57.462 45.000 9.54 9.54 37.43 3.56
326 327 7.002250 TGGCAATGTTATCAAATGGAGAAAA 57.998 32.000 0.00 0.00 0.00 2.29
327 328 6.602410 TGGCAATGTTATCAAATGGAGAAA 57.398 33.333 0.00 0.00 0.00 2.52
329 330 7.341512 TGTTATGGCAATGTTATCAAATGGAGA 59.658 33.333 0.00 0.00 0.00 3.71
332 333 7.171848 CCATGTTATGGCAATGTTATCAAATGG 59.828 37.037 0.00 0.00 44.70 3.16
333 334 8.078959 CCATGTTATGGCAATGTTATCAAATG 57.921 34.615 0.00 0.00 44.70 2.32
370 371 2.986479 CAAAAGGAATTTGCCACGCTAC 59.014 45.455 0.00 0.00 41.79 3.58
371 372 3.296322 CAAAAGGAATTTGCCACGCTA 57.704 42.857 0.00 0.00 41.79 4.26
372 373 2.153366 CAAAAGGAATTTGCCACGCT 57.847 45.000 0.00 0.00 41.79 5.07
386 390 8.405531 TCAACATCTTCTTTACTTCCACAAAAG 58.594 33.333 0.00 0.00 0.00 2.27
467 475 0.967380 CTCGGGCCCTCAAGCAAAAT 60.967 55.000 22.43 0.00 0.00 1.82
476 484 1.068741 CTAATGTACACTCGGGCCCTC 59.931 57.143 22.43 0.00 0.00 4.30
481 490 2.952978 AGAGAGCTAATGTACACTCGGG 59.047 50.000 0.00 0.00 34.31 5.14
486 495 8.344098 AGACGTTAATAGAGAGCTAATGTACAC 58.656 37.037 0.00 0.00 0.00 2.90
487 496 8.447924 AGACGTTAATAGAGAGCTAATGTACA 57.552 34.615 0.00 0.00 0.00 2.90
525 534 8.795842 AACCACCAAAACGTCATATATTTAGA 57.204 30.769 0.00 0.00 0.00 2.10
545 554 4.010349 CCTCCATTCCTAAGTTGAACCAC 58.990 47.826 0.00 0.00 0.00 4.16
568 577 8.080417 TCACAAGTAACATGTCTAGTTGTACTC 58.920 37.037 24.73 0.00 39.70 2.59
569 578 7.948357 TCACAAGTAACATGTCTAGTTGTACT 58.052 34.615 24.73 15.14 39.70 2.73
570 579 8.758633 ATCACAAGTAACATGTCTAGTTGTAC 57.241 34.615 24.73 13.66 39.70 2.90
571 580 9.772973 AAATCACAAGTAACATGTCTAGTTGTA 57.227 29.630 24.73 18.34 39.70 2.41
572 581 8.559536 CAAATCACAAGTAACATGTCTAGTTGT 58.440 33.333 22.24 22.24 41.47 3.32
573 582 7.535258 GCAAATCACAAGTAACATGTCTAGTTG 59.465 37.037 21.43 21.43 36.28 3.16
575 584 6.710295 TGCAAATCACAAGTAACATGTCTAGT 59.290 34.615 0.00 0.00 0.00 2.57
576 585 7.132694 TGCAAATCACAAGTAACATGTCTAG 57.867 36.000 0.00 0.00 0.00 2.43
577 586 7.503521 TTGCAAATCACAAGTAACATGTCTA 57.496 32.000 0.00 0.00 0.00 2.59
608 617 9.921637 TGATTTGTTTCTCACAAGTAACTTTTT 57.078 25.926 0.00 0.00 46.37 1.94
609 618 9.573133 CTGATTTGTTTCTCACAAGTAACTTTT 57.427 29.630 0.00 0.00 46.37 2.27
610 619 7.702348 GCTGATTTGTTTCTCACAAGTAACTTT 59.298 33.333 0.00 0.00 46.37 2.66
611 620 7.196331 GCTGATTTGTTTCTCACAAGTAACTT 58.804 34.615 0.00 0.00 46.37 2.66
612 621 6.238759 GGCTGATTTGTTTCTCACAAGTAACT 60.239 38.462 0.00 0.00 46.37 2.24
617 626 3.305608 GGGGCTGATTTGTTTCTCACAAG 60.306 47.826 0.00 0.00 46.37 3.16
776 785 2.223144 GCATATACCGCGATTTGCAAGA 59.777 45.455 8.23 0.00 46.97 3.02
777 786 2.574322 GCATATACCGCGATTTGCAAG 58.426 47.619 8.23 0.00 46.97 4.01
939 948 2.224281 TGAAGCTGTCTACCTTGTGTGG 60.224 50.000 0.00 0.00 0.00 4.17
953 962 1.964290 CTTCTTCGCGCCTGAAGCTG 61.964 60.000 17.22 10.06 44.01 4.24
966 975 1.456165 GTGCGTCGAGTTTCCTTCTTC 59.544 52.381 0.00 0.00 0.00 2.87
1007 1016 4.120085 GGTTATCCGCGTCTTGGG 57.880 61.111 4.92 0.00 0.00 4.12
1018 1027 5.632347 CGAGGTAATGGTGATAACGGTTATC 59.368 44.000 26.49 26.49 41.86 1.75
1021 1030 3.196254 ACGAGGTAATGGTGATAACGGTT 59.804 43.478 0.00 0.00 0.00 4.44
1025 1034 4.369182 CAGGACGAGGTAATGGTGATAAC 58.631 47.826 0.00 0.00 0.00 1.89
1026 1035 3.386726 CCAGGACGAGGTAATGGTGATAA 59.613 47.826 0.00 0.00 0.00 1.75
1068 1077 0.968393 GCTTGACGAGGAGGAGGAGT 60.968 60.000 0.00 0.00 0.00 3.85
1500 1509 1.872234 CATCGACGCAACGACGGAT 60.872 57.895 11.39 2.52 43.78 4.18
1917 1956 2.029918 TGCTCCGAATAGATCCGTGATG 60.030 50.000 0.00 0.00 0.00 3.07
2043 2202 4.111016 CGTACGCGGCTCTCACCA 62.111 66.667 12.47 0.00 0.00 4.17
2178 2337 3.530910 CTTGGGAACGTCGTGGCCT 62.531 63.158 3.32 0.00 0.00 5.19
2254 2413 1.949847 CTGAAGTCCTCGGCGTCCAT 61.950 60.000 6.85 0.00 0.00 3.41
2268 2427 1.219393 GAACCTCTCCGGCCTGAAG 59.781 63.158 0.00 0.36 35.61 3.02
2546 2719 5.867330 ACAGCTACATACGAGTACTAGGAT 58.133 41.667 7.94 1.01 0.00 3.24
2549 2722 5.118357 CCGTACAGCTACATACGAGTACTAG 59.882 48.000 20.15 0.00 45.51 2.57
2550 2723 4.984785 CCGTACAGCTACATACGAGTACTA 59.015 45.833 20.15 0.00 45.51 1.82
2551 2724 3.806521 CCGTACAGCTACATACGAGTACT 59.193 47.826 20.15 0.00 45.51 2.73
2552 2725 3.059325 CCCGTACAGCTACATACGAGTAC 60.059 52.174 20.15 10.18 45.51 2.73
2553 2726 3.133691 CCCGTACAGCTACATACGAGTA 58.866 50.000 20.15 0.00 45.51 2.59
2554 2727 1.945394 CCCGTACAGCTACATACGAGT 59.055 52.381 20.15 0.85 45.51 4.18
2555 2728 2.216046 TCCCGTACAGCTACATACGAG 58.784 52.381 20.15 11.16 45.51 4.18
2556 2729 2.330440 TCCCGTACAGCTACATACGA 57.670 50.000 20.15 4.51 45.51 3.43
2557 2730 2.412455 CGATCCCGTACAGCTACATACG 60.412 54.545 14.34 14.34 42.97 3.06
2584 2757 0.317020 CACGATCTCGCGCAGACATA 60.317 55.000 8.75 0.00 44.43 2.29
2585 2758 1.587350 CACGATCTCGCGCAGACAT 60.587 57.895 8.75 0.00 44.43 3.06
2590 2763 0.099791 TGATAACACGATCTCGCGCA 59.900 50.000 8.75 0.00 44.43 6.09
2636 2813 4.322650 GGCAAACATTTCCCTATCTGCAAA 60.323 41.667 0.00 0.00 0.00 3.68
2637 2814 3.195396 GGCAAACATTTCCCTATCTGCAA 59.805 43.478 0.00 0.00 0.00 4.08
2639 2816 3.026694 AGGCAAACATTTCCCTATCTGC 58.973 45.455 0.00 0.00 0.00 4.26
2641 2818 4.934356 TGAAGGCAAACATTTCCCTATCT 58.066 39.130 0.00 0.00 0.00 1.98
2642 2819 5.410924 GTTGAAGGCAAACATTTCCCTATC 58.589 41.667 0.00 0.00 35.42 2.08
2643 2820 4.082245 CGTTGAAGGCAAACATTTCCCTAT 60.082 41.667 0.00 0.00 35.42 2.57
2645 2822 2.035832 CGTTGAAGGCAAACATTTCCCT 59.964 45.455 0.00 0.00 35.42 4.20
2646 2823 2.035321 TCGTTGAAGGCAAACATTTCCC 59.965 45.455 0.00 0.00 35.42 3.97
2647 2824 3.049912 GTCGTTGAAGGCAAACATTTCC 58.950 45.455 0.00 0.00 35.42 3.13
2649 2826 2.356382 TCGTCGTTGAAGGCAAACATTT 59.644 40.909 0.00 0.00 35.42 2.32
2650 2827 1.944024 TCGTCGTTGAAGGCAAACATT 59.056 42.857 0.00 0.00 35.42 2.71
2651 2828 1.531149 CTCGTCGTTGAAGGCAAACAT 59.469 47.619 0.00 0.00 35.42 2.71
2652 2829 0.934496 CTCGTCGTTGAAGGCAAACA 59.066 50.000 0.00 0.00 35.42 2.83
2653 2830 0.384353 GCTCGTCGTTGAAGGCAAAC 60.384 55.000 0.00 0.00 35.42 2.93
2654 2831 1.827315 CGCTCGTCGTTGAAGGCAAA 61.827 55.000 0.00 0.00 35.42 3.68
2655 2832 2.307309 CGCTCGTCGTTGAAGGCAA 61.307 57.895 0.00 0.00 0.00 4.52
2677 2854 3.792053 CTATGGACACGGAGGCGGC 62.792 68.421 0.00 0.00 0.00 6.53
2678 2855 2.417516 CTATGGACACGGAGGCGG 59.582 66.667 0.00 0.00 0.00 6.13
2679 2856 1.464376 ATCCTATGGACACGGAGGCG 61.464 60.000 0.00 0.00 32.98 5.52
2680 2857 0.759346 AATCCTATGGACACGGAGGC 59.241 55.000 0.00 0.00 32.98 4.70
2681 2858 1.070758 CCAATCCTATGGACACGGAGG 59.929 57.143 0.00 0.00 43.54 4.30
2682 2859 1.762957 ACCAATCCTATGGACACGGAG 59.237 52.381 0.00 0.00 43.54 4.63
2683 2860 1.874129 ACCAATCCTATGGACACGGA 58.126 50.000 0.00 0.00 43.54 4.69
2684 2861 2.170607 AGAACCAATCCTATGGACACGG 59.829 50.000 0.00 0.00 43.54 4.94
2685 2862 3.543680 AGAACCAATCCTATGGACACG 57.456 47.619 0.00 0.00 43.54 4.49
2687 2864 5.397899 GGATGAAGAACCAATCCTATGGACA 60.398 44.000 0.00 0.00 43.54 4.02
2688 2865 5.066593 GGATGAAGAACCAATCCTATGGAC 58.933 45.833 0.00 0.00 43.54 4.02
2690 2867 5.052693 TGGATGAAGAACCAATCCTATGG 57.947 43.478 2.85 0.00 46.38 2.74
2691 2868 6.125029 AGTTGGATGAAGAACCAATCCTATG 58.875 40.000 0.00 0.00 45.81 2.23
2693 2870 5.779241 AGTTGGATGAAGAACCAATCCTA 57.221 39.130 0.00 0.00 45.81 2.94
2695 2872 4.884164 CCTAGTTGGATGAAGAACCAATCC 59.116 45.833 0.00 0.00 45.81 3.01
2696 2873 5.745227 TCCTAGTTGGATGAAGAACCAATC 58.255 41.667 0.00 0.00 45.81 2.67
2697 2874 5.251700 ACTCCTAGTTGGATGAAGAACCAAT 59.748 40.000 0.00 0.00 45.81 3.16
2698 2875 4.597507 ACTCCTAGTTGGATGAAGAACCAA 59.402 41.667 0.00 0.00 45.16 3.67
2699 2876 4.168101 ACTCCTAGTTGGATGAAGAACCA 58.832 43.478 0.00 0.00 45.16 3.67
2700 2877 4.223032 TGACTCCTAGTTGGATGAAGAACC 59.777 45.833 0.00 0.00 45.16 3.62
2701 2878 5.407407 TGACTCCTAGTTGGATGAAGAAC 57.593 43.478 0.00 0.00 45.16 3.01
2703 2880 5.960811 AGATTGACTCCTAGTTGGATGAAGA 59.039 40.000 0.00 0.00 45.16 2.87
2704 2881 6.232581 AGATTGACTCCTAGTTGGATGAAG 57.767 41.667 0.00 0.00 45.16 3.02
2705 2882 6.213397 TGAAGATTGACTCCTAGTTGGATGAA 59.787 38.462 0.00 0.00 45.16 2.57
2706 2883 5.721480 TGAAGATTGACTCCTAGTTGGATGA 59.279 40.000 0.00 0.00 45.16 2.92
2709 2886 4.223032 GGTGAAGATTGACTCCTAGTTGGA 59.777 45.833 0.00 0.00 43.86 3.53
2710 2887 4.508662 GGTGAAGATTGACTCCTAGTTGG 58.491 47.826 0.00 0.00 37.10 3.77
2712 2889 4.168101 TGGGTGAAGATTGACTCCTAGTT 58.832 43.478 0.00 0.00 0.00 2.24
2714 2891 4.826274 TTGGGTGAAGATTGACTCCTAG 57.174 45.455 0.00 0.00 0.00 3.02
2716 2893 4.453480 TTTTGGGTGAAGATTGACTCCT 57.547 40.909 0.00 0.00 0.00 3.69
2717 2894 5.473039 CATTTTTGGGTGAAGATTGACTCC 58.527 41.667 0.00 0.00 0.00 3.85
2718 2895 4.925646 GCATTTTTGGGTGAAGATTGACTC 59.074 41.667 0.00 0.00 0.00 3.36
2719 2896 4.590222 AGCATTTTTGGGTGAAGATTGACT 59.410 37.500 0.00 0.00 0.00 3.41
2720 2897 4.886579 AGCATTTTTGGGTGAAGATTGAC 58.113 39.130 0.00 0.00 0.00 3.18
2721 2898 6.662865 TTAGCATTTTTGGGTGAAGATTGA 57.337 33.333 0.00 0.00 0.00 2.57
2722 2899 6.128849 CGTTTAGCATTTTTGGGTGAAGATTG 60.129 38.462 0.00 0.00 0.00 2.67
2723 2900 5.925969 CGTTTAGCATTTTTGGGTGAAGATT 59.074 36.000 0.00 0.00 0.00 2.40
2725 2902 4.865776 CGTTTAGCATTTTTGGGTGAAGA 58.134 39.130 0.00 0.00 0.00 2.87
2740 2917 4.856510 GTAAACAGCCCGTGCGTTTAGC 62.857 54.545 15.67 9.95 41.94 3.09
2741 2918 1.136169 GTAAACAGCCCGTGCGTTTAG 60.136 52.381 15.67 0.00 41.94 1.85
2742 2919 0.867086 GTAAACAGCCCGTGCGTTTA 59.133 50.000 12.87 12.87 44.33 2.01
2744 2921 0.033781 TAGTAAACAGCCCGTGCGTT 59.966 50.000 0.00 0.00 44.33 4.84
2745 2922 0.389426 CTAGTAAACAGCCCGTGCGT 60.389 55.000 0.00 0.00 44.33 5.24
2746 2923 1.693083 GCTAGTAAACAGCCCGTGCG 61.693 60.000 0.00 0.00 44.33 5.34
2748 2925 2.094762 AAGCTAGTAAACAGCCCGTG 57.905 50.000 0.00 0.00 39.99 4.94
2749 2926 2.853235 AAAGCTAGTAAACAGCCCGT 57.147 45.000 0.00 0.00 39.99 5.28
2751 2928 3.373130 CCGTAAAAGCTAGTAAACAGCCC 59.627 47.826 0.00 0.00 39.99 5.19
2752 2929 3.373130 CCCGTAAAAGCTAGTAAACAGCC 59.627 47.826 0.00 0.00 39.99 4.85
2753 2930 3.181513 GCCCGTAAAAGCTAGTAAACAGC 60.182 47.826 0.00 0.00 39.41 4.40
2754 2931 4.092968 CAGCCCGTAAAAGCTAGTAAACAG 59.907 45.833 0.00 0.00 37.18 3.16
2755 2932 3.998341 CAGCCCGTAAAAGCTAGTAAACA 59.002 43.478 0.00 0.00 37.18 2.83
2756 2933 3.181513 GCAGCCCGTAAAAGCTAGTAAAC 60.182 47.826 0.00 0.00 37.18 2.01
2760 2937 0.613777 AGCAGCCCGTAAAAGCTAGT 59.386 50.000 0.00 0.00 37.18 2.57
2761 2938 1.666189 GAAGCAGCCCGTAAAAGCTAG 59.334 52.381 0.00 0.00 37.18 3.42
2763 2940 0.960861 GGAAGCAGCCCGTAAAAGCT 60.961 55.000 0.00 0.00 40.89 3.74
2764 2941 1.506718 GGAAGCAGCCCGTAAAAGC 59.493 57.895 0.00 0.00 0.00 3.51
2765 2942 2.180674 GGGAAGCAGCCCGTAAAAG 58.819 57.895 0.00 0.00 38.58 2.27
2773 2950 3.271729 GTTTAGTTAGAGGGAAGCAGCC 58.728 50.000 0.00 0.00 0.00 4.85
2774 2951 3.055021 AGGTTTAGTTAGAGGGAAGCAGC 60.055 47.826 0.00 0.00 0.00 5.25
2775 2952 4.508662 CAGGTTTAGTTAGAGGGAAGCAG 58.491 47.826 0.00 0.00 0.00 4.24
2777 2954 3.271729 GCAGGTTTAGTTAGAGGGAAGC 58.728 50.000 0.00 0.00 0.00 3.86
2778 2955 3.370633 GGGCAGGTTTAGTTAGAGGGAAG 60.371 52.174 0.00 0.00 0.00 3.46
2781 2958 1.212195 GGGGCAGGTTTAGTTAGAGGG 59.788 57.143 0.00 0.00 0.00 4.30
2782 2959 1.212195 GGGGGCAGGTTTAGTTAGAGG 59.788 57.143 0.00 0.00 0.00 3.69
2783 2960 2.711978 GGGGGCAGGTTTAGTTAGAG 57.288 55.000 0.00 0.00 0.00 2.43
2800 2977 3.911719 CTGAAAATCAGGGAGGGGG 57.088 57.895 0.00 0.00 40.71 5.40
2808 2985 1.315257 CCCACCCGCCTGAAAATCAG 61.315 60.000 0.32 0.32 43.91 2.90
2810 2987 2.052104 CCCCACCCGCCTGAAAATC 61.052 63.158 0.00 0.00 0.00 2.17
2811 2988 2.037208 CCCCACCCGCCTGAAAAT 59.963 61.111 0.00 0.00 0.00 1.82
2812 2989 4.986708 GCCCCACCCGCCTGAAAA 62.987 66.667 0.00 0.00 0.00 2.29
2823 3000 2.597903 GGAGAGATTGGGCCCCAC 59.402 66.667 22.27 10.77 30.78 4.61
2826 3003 0.697854 TAAGGGGAGAGATTGGGCCC 60.698 60.000 17.59 17.59 39.93 5.80
2833 3010 4.600983 CCTGATTGGATTAAGGGGAGAGAT 59.399 45.833 0.00 0.00 38.35 2.75
2835 3012 3.497584 GCCTGATTGGATTAAGGGGAGAG 60.498 52.174 0.00 0.00 38.35 3.20
2836 3013 2.443255 GCCTGATTGGATTAAGGGGAGA 59.557 50.000 0.00 0.00 38.35 3.71
2837 3014 2.489802 GGCCTGATTGGATTAAGGGGAG 60.490 54.545 0.00 0.00 38.35 4.30
2841 3018 3.498661 GGTAGGGCCTGATTGGATTAAGG 60.499 52.174 18.53 0.00 38.35 2.69
2842 3019 3.138283 TGGTAGGGCCTGATTGGATTAAG 59.862 47.826 18.53 0.00 38.35 1.85
2843 3020 3.127250 TGGTAGGGCCTGATTGGATTAA 58.873 45.455 18.53 0.00 38.35 1.40
2844 3021 2.782922 TGGTAGGGCCTGATTGGATTA 58.217 47.619 18.53 0.00 38.35 1.75
2845 3022 1.607225 TGGTAGGGCCTGATTGGATT 58.393 50.000 18.53 0.00 38.35 3.01
2847 3024 0.623723 GTTGGTAGGGCCTGATTGGA 59.376 55.000 18.53 0.00 38.35 3.53
2848 3025 0.625849 AGTTGGTAGGGCCTGATTGG 59.374 55.000 18.53 0.00 38.35 3.16
2850 3027 1.561542 CTGAGTTGGTAGGGCCTGATT 59.438 52.381 18.53 0.00 38.35 2.57
2852 3029 0.116342 TCTGAGTTGGTAGGGCCTGA 59.884 55.000 18.53 0.00 38.35 3.86
2853 3030 0.250513 GTCTGAGTTGGTAGGGCCTG 59.749 60.000 18.53 0.00 38.35 4.85
2854 3031 0.117340 AGTCTGAGTTGGTAGGGCCT 59.883 55.000 12.58 12.58 38.35 5.19
2855 3032 0.537653 GAGTCTGAGTTGGTAGGGCC 59.462 60.000 0.00 0.00 37.90 5.80
2856 3033 1.066787 GTGAGTCTGAGTTGGTAGGGC 60.067 57.143 0.00 0.00 0.00 5.19
2858 3035 2.494073 GGAGTGAGTCTGAGTTGGTAGG 59.506 54.545 0.00 0.00 0.00 3.18
2859 3036 2.162608 CGGAGTGAGTCTGAGTTGGTAG 59.837 54.545 0.00 0.00 32.51 3.18
2864 3041 4.262079 CCTTTTACGGAGTGAGTCTGAGTT 60.262 45.833 2.55 0.00 45.73 3.01
2866 3043 3.839293 CCTTTTACGGAGTGAGTCTGAG 58.161 50.000 2.55 0.00 45.73 3.35
2867 3044 2.029290 GCCTTTTACGGAGTGAGTCTGA 60.029 50.000 2.55 0.00 45.73 3.27
2868 3045 2.338500 GCCTTTTACGGAGTGAGTCTG 58.662 52.381 0.00 0.00 45.73 3.51
2869 3046 1.275573 GGCCTTTTACGGAGTGAGTCT 59.724 52.381 0.00 0.00 45.73 3.24
2870 3047 1.675116 GGGCCTTTTACGGAGTGAGTC 60.675 57.143 0.84 0.00 45.73 3.36
2871 3048 0.323957 GGGCCTTTTACGGAGTGAGT 59.676 55.000 0.84 0.00 45.73 3.41
2872 3049 0.739813 CGGGCCTTTTACGGAGTGAG 60.740 60.000 0.84 0.00 45.73 3.51
2873 3050 1.294138 CGGGCCTTTTACGGAGTGA 59.706 57.895 0.84 0.00 45.73 3.41
2877 3054 1.001887 AATGCGGGCCTTTTACGGA 60.002 52.632 0.84 0.00 0.00 4.69
2878 3055 1.138671 CAATGCGGGCCTTTTACGG 59.861 57.895 0.84 0.00 0.00 4.02
2880 3057 0.179137 GCTCAATGCGGGCCTTTTAC 60.179 55.000 0.84 0.00 0.00 2.01
2881 3058 1.319614 GGCTCAATGCGGGCCTTTTA 61.320 55.000 0.84 0.00 44.05 1.52
2882 3059 2.649129 GGCTCAATGCGGGCCTTTT 61.649 57.895 0.84 0.00 44.05 2.27
2883 3060 3.070576 GGCTCAATGCGGGCCTTT 61.071 61.111 0.84 0.00 44.05 3.11
2888 3065 4.776322 TCACGGGCTCAATGCGGG 62.776 66.667 0.00 0.00 44.05 6.13
2889 3066 2.114670 ATTCACGGGCTCAATGCGG 61.115 57.895 0.00 0.00 44.05 5.69
2891 3068 1.331756 CTACATTCACGGGCTCAATGC 59.668 52.381 0.00 0.00 41.94 3.56
2892 3069 1.331756 GCTACATTCACGGGCTCAATG 59.668 52.381 0.00 0.00 34.29 2.82
2893 3070 1.065491 TGCTACATTCACGGGCTCAAT 60.065 47.619 0.00 0.00 0.00 2.57
2896 3073 1.331756 CAATGCTACATTCACGGGCTC 59.668 52.381 0.00 0.00 0.00 4.70
2897 3074 1.382522 CAATGCTACATTCACGGGCT 58.617 50.000 0.00 0.00 0.00 5.19
2899 3076 1.064505 CAGCAATGCTACATTCACGGG 59.935 52.381 7.70 0.00 36.40 5.28
2900 3077 2.009051 TCAGCAATGCTACATTCACGG 58.991 47.619 7.70 0.00 36.40 4.94
2901 3078 3.558829 AGATCAGCAATGCTACATTCACG 59.441 43.478 7.70 0.00 36.40 4.35
2902 3079 5.065602 TGAAGATCAGCAATGCTACATTCAC 59.934 40.000 7.70 0.00 36.40 3.18
2903 3080 5.065602 GTGAAGATCAGCAATGCTACATTCA 59.934 40.000 7.70 12.96 36.40 2.57
2904 3081 5.505324 GGTGAAGATCAGCAATGCTACATTC 60.505 44.000 7.70 10.56 43.79 2.67
2906 3083 3.881688 GGTGAAGATCAGCAATGCTACAT 59.118 43.478 7.70 2.61 43.79 2.29
2907 3084 3.054875 AGGTGAAGATCAGCAATGCTACA 60.055 43.478 7.70 0.00 46.52 2.74
2908 3085 3.539604 AGGTGAAGATCAGCAATGCTAC 58.460 45.455 7.70 0.00 46.52 3.58
2911 3088 3.539604 AGTAGGTGAAGATCAGCAATGC 58.460 45.455 11.61 0.00 46.52 3.56
2912 3089 5.181009 TGAAGTAGGTGAAGATCAGCAATG 58.819 41.667 11.61 0.00 46.52 2.82
2913 3090 5.426689 TGAAGTAGGTGAAGATCAGCAAT 57.573 39.130 11.61 0.00 46.52 3.56
2914 3091 4.890158 TGAAGTAGGTGAAGATCAGCAA 57.110 40.909 11.61 0.00 46.52 3.91
2915 3092 6.737720 ATATGAAGTAGGTGAAGATCAGCA 57.262 37.500 11.61 0.00 46.52 4.41
2916 3093 7.441017 AGAATATGAAGTAGGTGAAGATCAGC 58.559 38.462 0.00 1.46 44.62 4.26
2922 3099 9.877178 AGTTGTAAGAATATGAAGTAGGTGAAG 57.123 33.333 0.00 0.00 0.00 3.02
2940 3135 8.964420 TTCTGAAACAAAAGTGAAGTTGTAAG 57.036 30.769 0.00 0.00 36.97 2.34
2944 3139 5.289434 GCCTTCTGAAACAAAAGTGAAGTTG 59.711 40.000 0.00 0.00 31.79 3.16
2946 3141 4.438744 CGCCTTCTGAAACAAAAGTGAAGT 60.439 41.667 0.00 0.00 31.79 3.01
2947 3142 4.037690 CGCCTTCTGAAACAAAAGTGAAG 58.962 43.478 0.00 0.00 0.00 3.02
2950 3145 2.543653 CCCGCCTTCTGAAACAAAAGTG 60.544 50.000 0.00 0.00 0.00 3.16
2951 3146 1.681264 CCCGCCTTCTGAAACAAAAGT 59.319 47.619 0.00 0.00 0.00 2.66
2952 3147 1.953686 TCCCGCCTTCTGAAACAAAAG 59.046 47.619 0.00 0.00 0.00 2.27
2958 3153 1.302511 GCAGTCCCGCCTTCTGAAA 60.303 57.895 0.00 0.00 0.00 2.69
2959 3154 2.050836 TTGCAGTCCCGCCTTCTGAA 62.051 55.000 0.00 0.00 0.00 3.02
2961 3156 2.032528 TTGCAGTCCCGCCTTCTG 59.967 61.111 0.00 0.00 0.00 3.02
2962 3157 1.192146 TAGTTGCAGTCCCGCCTTCT 61.192 55.000 0.00 0.00 0.00 2.85
2963 3158 0.741221 CTAGTTGCAGTCCCGCCTTC 60.741 60.000 0.00 0.00 0.00 3.46
2965 3160 2.660064 CCTAGTTGCAGTCCCGCCT 61.660 63.158 0.00 0.00 0.00 5.52
2966 3161 2.125106 CCTAGTTGCAGTCCCGCC 60.125 66.667 0.00 0.00 0.00 6.13
2967 3162 2.820037 GCCTAGTTGCAGTCCCGC 60.820 66.667 0.00 0.00 0.00 6.13
2968 3163 2.125106 GGCCTAGTTGCAGTCCCG 60.125 66.667 0.00 0.00 0.00 5.14
2970 3165 1.168714 CAAAGGCCTAGTTGCAGTCC 58.831 55.000 5.16 0.00 0.00 3.85
2971 3166 1.537202 CACAAAGGCCTAGTTGCAGTC 59.463 52.381 15.75 0.00 0.00 3.51
2972 3167 1.142870 TCACAAAGGCCTAGTTGCAGT 59.857 47.619 15.75 0.68 0.00 4.40
2973 3168 1.896220 TCACAAAGGCCTAGTTGCAG 58.104 50.000 15.75 9.72 0.00 4.41
2975 3170 1.474077 CCATCACAAAGGCCTAGTTGC 59.526 52.381 15.75 0.00 0.00 4.17
2976 3171 1.474077 GCCATCACAAAGGCCTAGTTG 59.526 52.381 5.16 11.16 45.18 3.16
2977 3172 1.839424 GCCATCACAAAGGCCTAGTT 58.161 50.000 5.16 0.00 45.18 2.24
2978 3173 3.577389 GCCATCACAAAGGCCTAGT 57.423 52.632 5.16 5.05 45.18 2.57
2984 3179 2.493278 CAAGGTTAGGCCATCACAAAGG 59.507 50.000 5.01 0.00 40.61 3.11
2985 3180 2.094545 GCAAGGTTAGGCCATCACAAAG 60.095 50.000 5.01 0.00 40.61 2.77
2986 3181 1.892474 GCAAGGTTAGGCCATCACAAA 59.108 47.619 5.01 0.00 40.61 2.83
2988 3183 0.676466 CGCAAGGTTAGGCCATCACA 60.676 55.000 5.01 0.00 40.61 3.58
2989 3184 0.392461 TCGCAAGGTTAGGCCATCAC 60.392 55.000 5.01 0.00 40.61 3.06
2990 3185 0.107703 CTCGCAAGGTTAGGCCATCA 60.108 55.000 5.01 0.00 40.61 3.07
2991 3186 0.107654 ACTCGCAAGGTTAGGCCATC 60.108 55.000 5.01 0.00 40.61 3.51
2992 3187 0.107654 GACTCGCAAGGTTAGGCCAT 60.108 55.000 5.01 0.00 40.61 4.40
2994 3189 1.449778 GGACTCGCAAGGTTAGGCC 60.450 63.158 0.00 0.00 38.47 5.19
2995 3190 1.810030 CGGACTCGCAAGGTTAGGC 60.810 63.158 0.00 0.00 38.47 3.93
2996 3191 0.813184 TACGGACTCGCAAGGTTAGG 59.187 55.000 0.00 0.00 40.63 2.69
2997 3192 2.642139 TTACGGACTCGCAAGGTTAG 57.358 50.000 0.00 0.00 40.63 2.34
2998 3193 3.947196 TCTATTACGGACTCGCAAGGTTA 59.053 43.478 0.00 0.00 40.63 2.85
3001 3196 3.431922 TTCTATTACGGACTCGCAAGG 57.568 47.619 0.00 0.00 40.63 3.61
3002 3197 4.421948 AGTTTCTATTACGGACTCGCAAG 58.578 43.478 0.00 0.00 40.63 4.01
3003 3198 4.082625 TGAGTTTCTATTACGGACTCGCAA 60.083 41.667 0.00 0.00 39.57 4.85
3006 3201 4.349501 GGTGAGTTTCTATTACGGACTCG 58.650 47.826 0.00 0.00 39.57 4.18
3007 3202 4.349501 CGGTGAGTTTCTATTACGGACTC 58.650 47.826 0.00 0.00 37.75 3.36
3008 3203 3.129988 CCGGTGAGTTTCTATTACGGACT 59.870 47.826 0.00 0.00 42.42 3.85
3009 3204 3.442100 CCGGTGAGTTTCTATTACGGAC 58.558 50.000 0.00 0.00 42.42 4.79
3010 3205 2.428171 CCCGGTGAGTTTCTATTACGGA 59.572 50.000 0.00 0.00 42.42 4.69
3011 3206 2.482490 CCCCGGTGAGTTTCTATTACGG 60.482 54.545 0.00 0.00 39.76 4.02
3012 3207 2.167075 ACCCCGGTGAGTTTCTATTACG 59.833 50.000 0.00 0.00 0.00 3.18
3013 3208 3.900966 ACCCCGGTGAGTTTCTATTAC 57.099 47.619 0.00 0.00 0.00 1.89
3025 3220 1.599797 GGTCTGTTTCACCCCGGTG 60.600 63.158 7.60 7.60 46.64 4.94
3026 3221 1.765597 GAGGTCTGTTTCACCCCGGT 61.766 60.000 0.00 0.00 33.96 5.28
3027 3222 1.003718 GAGGTCTGTTTCACCCCGG 60.004 63.158 0.00 0.00 33.96 5.73
3029 3224 0.395312 TTCGAGGTCTGTTTCACCCC 59.605 55.000 0.00 0.00 33.96 4.95
3030 3225 2.076863 CATTCGAGGTCTGTTTCACCC 58.923 52.381 0.00 0.00 33.96 4.61
3031 3226 2.737252 GACATTCGAGGTCTGTTTCACC 59.263 50.000 10.93 0.00 32.54 4.02
3032 3227 2.737252 GGACATTCGAGGTCTGTTTCAC 59.263 50.000 15.95 0.00 35.61 3.18
3033 3228 2.367241 TGGACATTCGAGGTCTGTTTCA 59.633 45.455 15.95 5.56 35.61 2.69
3034 3229 3.040147 TGGACATTCGAGGTCTGTTTC 57.960 47.619 15.95 3.50 35.61 2.78
3036 3231 2.104111 TGTTGGACATTCGAGGTCTGTT 59.896 45.455 15.95 0.00 35.61 3.16
3037 3232 1.691976 TGTTGGACATTCGAGGTCTGT 59.308 47.619 15.95 5.70 35.61 3.41
3038 3233 2.455674 TGTTGGACATTCGAGGTCTG 57.544 50.000 15.95 2.88 35.61 3.51
3039 3234 2.093447 GGATGTTGGACATTCGAGGTCT 60.093 50.000 15.95 0.06 39.27 3.85
3040 3235 2.280628 GGATGTTGGACATTCGAGGTC 58.719 52.381 9.99 9.99 39.27 3.85
3042 3237 1.668419 GGGATGTTGGACATTCGAGG 58.332 55.000 0.00 0.00 39.27 4.63
3043 3238 1.668419 GGGGATGTTGGACATTCGAG 58.332 55.000 0.00 0.00 39.27 4.04
3045 3240 2.793831 GGGGGATGTTGGACATTCG 58.206 57.895 0.00 0.00 39.27 3.34
3276 3471 3.850095 GATCTAGGTGGCGGCGCTC 62.850 68.421 32.30 23.16 0.00 5.03
3277 3472 3.917760 GATCTAGGTGGCGGCGCT 61.918 66.667 32.30 14.66 0.00 5.92
3278 3473 3.850095 GAGATCTAGGTGGCGGCGC 62.850 68.421 26.17 26.17 0.00 6.53
3279 3474 2.336809 GAGATCTAGGTGGCGGCG 59.663 66.667 0.51 0.51 0.00 6.46
3280 3475 1.811645 GAGGAGATCTAGGTGGCGGC 61.812 65.000 0.00 0.00 0.00 6.53
3281 3476 1.182385 GGAGGAGATCTAGGTGGCGG 61.182 65.000 0.00 0.00 0.00 6.13
3282 3477 1.182385 GGGAGGAGATCTAGGTGGCG 61.182 65.000 0.00 0.00 0.00 5.69
3283 3478 0.834261 GGGGAGGAGATCTAGGTGGC 60.834 65.000 0.00 0.00 0.00 5.01
3284 3479 0.178918 GGGGGAGGAGATCTAGGTGG 60.179 65.000 0.00 0.00 0.00 4.61
3285 3480 3.466714 GGGGGAGGAGATCTAGGTG 57.533 63.158 0.00 0.00 0.00 4.00
3312 3507 3.827898 GACCTCCTCGAGTGGCGG 61.828 72.222 18.13 9.44 41.33 6.13
3313 3508 4.180946 CGACCTCCTCGAGTGGCG 62.181 72.222 18.13 17.39 46.14 5.69
3314 3509 4.500116 GCGACCTCCTCGAGTGGC 62.500 72.222 18.13 7.54 46.14 5.01
3315 3510 3.827898 GGCGACCTCCTCGAGTGG 61.828 72.222 12.31 15.10 46.14 4.00
3316 3511 4.180946 CGGCGACCTCCTCGAGTG 62.181 72.222 12.31 3.02 46.14 3.51
3369 3564 4.856607 CGGAGCGACGAAGGCCTC 62.857 72.222 5.23 0.00 35.47 4.70
3371 3566 4.736896 AACGGAGCGACGAAGGCC 62.737 66.667 9.99 0.00 37.61 5.19
3372 3567 3.179939 GAACGGAGCGACGAAGGC 61.180 66.667 9.99 0.00 37.61 4.35
3373 3568 2.506438 GGAACGGAGCGACGAAGG 60.506 66.667 9.99 0.00 37.61 3.46
3374 3569 2.506438 GGGAACGGAGCGACGAAG 60.506 66.667 9.99 0.00 37.61 3.79
3383 3578 3.595362 GATCCAGATCTTCGGGAACGGA 61.595 54.545 4.49 0.87 43.69 4.69
3384 3579 1.269831 GATCCAGATCTTCGGGAACGG 60.270 57.143 4.49 0.00 43.69 4.44
3385 3580 1.269831 GGATCCAGATCTTCGGGAACG 60.270 57.143 6.95 0.00 43.69 3.95
3386 3581 2.036604 GAGGATCCAGATCTTCGGGAAC 59.963 54.545 15.82 2.40 43.69 3.62
3387 3582 2.320781 GAGGATCCAGATCTTCGGGAA 58.679 52.381 15.82 0.00 43.69 3.97
3388 3583 2.002505 GAGGATCCAGATCTTCGGGA 57.997 55.000 15.82 2.92 44.54 5.14
3392 3587 0.972883 CCCCGAGGATCCAGATCTTC 59.027 60.000 15.82 9.17 39.63 2.87
3393 3588 0.266152 ACCCCGAGGATCCAGATCTT 59.734 55.000 15.82 0.00 37.92 2.40
3394 3589 0.470833 CACCCCGAGGATCCAGATCT 60.471 60.000 15.82 0.00 37.92 2.75
3395 3590 1.476007 CCACCCCGAGGATCCAGATC 61.476 65.000 15.82 1.51 36.73 2.75
3396 3591 1.460305 CCACCCCGAGGATCCAGAT 60.460 63.158 15.82 0.00 36.73 2.90
3397 3592 2.041922 CCACCCCGAGGATCCAGA 60.042 66.667 15.82 0.00 36.73 3.86
3398 3593 3.866582 GCCACCCCGAGGATCCAG 61.867 72.222 15.82 7.43 36.73 3.86
3437 3632 4.811761 GTCCAATGCGCGAACGGC 62.812 66.667 12.10 0.00 40.57 5.68
3438 3633 3.367051 CTGTCCAATGCGCGAACGG 62.367 63.158 12.10 3.54 40.57 4.44
3439 3634 2.096406 CTGTCCAATGCGCGAACG 59.904 61.111 12.10 0.00 44.07 3.95
3440 3635 1.154413 CACTGTCCAATGCGCGAAC 60.154 57.895 12.10 0.00 0.00 3.95
3441 3636 1.596752 ACACTGTCCAATGCGCGAA 60.597 52.632 12.10 0.00 0.00 4.70
3442 3637 2.030412 ACACTGTCCAATGCGCGA 59.970 55.556 12.10 0.00 0.00 5.87
3443 3638 2.174107 CACACTGTCCAATGCGCG 59.826 61.111 0.00 0.00 0.00 6.86
3444 3639 2.126734 GCACACTGTCCAATGCGC 60.127 61.111 0.00 0.00 0.00 6.09
3446 3641 1.081906 CACGCACACTGTCCAATGC 60.082 57.895 0.00 0.00 34.66 3.56
3447 3642 1.575922 CCACGCACACTGTCCAATG 59.424 57.895 0.00 0.00 0.00 2.82
3448 3643 1.600636 CCCACGCACACTGTCCAAT 60.601 57.895 0.00 0.00 0.00 3.16
3449 3644 2.203139 CCCACGCACACTGTCCAA 60.203 61.111 0.00 0.00 0.00 3.53
3450 3645 4.248842 CCCCACGCACACTGTCCA 62.249 66.667 0.00 0.00 0.00 4.02
3468 3663 4.500116 GAGGACGCCGGTCAGAGC 62.500 72.222 1.90 0.00 45.28 4.09
3469 3664 4.180946 CGAGGACGCCGGTCAGAG 62.181 72.222 1.90 0.00 45.28 3.35
3470 3665 4.710167 TCGAGGACGCCGGTCAGA 62.710 66.667 1.90 0.00 45.28 3.27
3471 3666 4.477975 GTCGAGGACGCCGGTCAG 62.478 72.222 1.90 0.00 45.28 3.51
3524 3719 4.351054 AAGAAGGCCCCCACGCTG 62.351 66.667 0.00 0.00 0.00 5.18
3525 3720 4.035102 GAAGAAGGCCCCCACGCT 62.035 66.667 0.00 0.00 0.00 5.07
3527 3722 3.330720 AGGAAGAAGGCCCCCACG 61.331 66.667 0.00 0.00 0.00 4.94
3528 3723 2.677848 GAGGAAGAAGGCCCCCAC 59.322 66.667 0.00 0.00 0.00 4.61
3529 3724 3.009115 CGAGGAAGAAGGCCCCCA 61.009 66.667 0.00 0.00 0.00 4.96
3530 3725 4.491409 GCGAGGAAGAAGGCCCCC 62.491 72.222 0.00 0.00 0.00 5.40
3531 3726 4.491409 GGCGAGGAAGAAGGCCCC 62.491 72.222 0.00 0.00 39.67 5.80
3532 3727 3.689002 CTGGCGAGGAAGAAGGCCC 62.689 68.421 0.00 0.00 44.96 5.80
3533 3728 1.977293 ATCTGGCGAGGAAGAAGGCC 61.977 60.000 0.00 0.00 45.76 5.19
3534 3729 0.531753 GATCTGGCGAGGAAGAAGGC 60.532 60.000 0.00 0.00 0.00 4.35
3535 3730 1.118838 AGATCTGGCGAGGAAGAAGG 58.881 55.000 0.00 0.00 0.00 3.46
3536 3731 1.202510 CCAGATCTGGCGAGGAAGAAG 60.203 57.143 28.45 0.77 44.73 2.85
3537 3732 0.826715 CCAGATCTGGCGAGGAAGAA 59.173 55.000 28.45 0.00 44.73 2.52
3538 3733 2.509512 CCAGATCTGGCGAGGAAGA 58.490 57.895 28.45 0.00 44.73 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.