Multiple sequence alignment - TraesCS6B01G169500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6B01G169500 | chr6B | 100.000 | 3206 | 0 | 0 | 1 | 3206 | 181470929 | 181474134 | 0.000000e+00 | 5921.0 |
1 | TraesCS6B01G169500 | chr6B | 94.175 | 309 | 17 | 1 | 4 | 311 | 476190853 | 476191161 | 1.350000e-128 | 470.0 |
2 | TraesCS6B01G169500 | chr6D | 91.304 | 1748 | 96 | 33 | 871 | 2581 | 97262749 | 97264477 | 0.000000e+00 | 2335.0 |
3 | TraesCS6B01G169500 | chr6D | 85.736 | 645 | 57 | 21 | 2575 | 3206 | 97264562 | 97265184 | 0.000000e+00 | 649.0 |
4 | TraesCS6B01G169500 | chr6D | 93.891 | 311 | 19 | 0 | 1 | 311 | 460656057 | 460656367 | 1.350000e-128 | 470.0 |
5 | TraesCS6B01G169500 | chr6A | 90.164 | 1769 | 92 | 39 | 871 | 2581 | 116336148 | 116337892 | 0.000000e+00 | 2228.0 |
6 | TraesCS6B01G169500 | chr6A | 91.993 | 537 | 29 | 7 | 2575 | 3106 | 116337982 | 116338509 | 0.000000e+00 | 741.0 |
7 | TraesCS6B01G169500 | chr6A | 94.286 | 35 | 1 | 1 | 871 | 904 | 116089196 | 116089230 | 6.000000e-03 | 52.8 |
8 | TraesCS6B01G169500 | chr1B | 89.228 | 557 | 51 | 3 | 321 | 875 | 94574703 | 94575252 | 0.000000e+00 | 688.0 |
9 | TraesCS6B01G169500 | chr1B | 87.500 | 448 | 45 | 4 | 303 | 746 | 44371618 | 44372058 | 1.030000e-139 | 507.0 |
10 | TraesCS6B01G169500 | chr1B | 95.146 | 309 | 15 | 0 | 3 | 311 | 133266533 | 133266225 | 3.720000e-134 | 488.0 |
11 | TraesCS6B01G169500 | chr1B | 95.724 | 304 | 12 | 1 | 4 | 306 | 623720296 | 623719993 | 3.720000e-134 | 488.0 |
12 | TraesCS6B01G169500 | chr1B | 94.855 | 311 | 12 | 4 | 3 | 311 | 94562357 | 94562665 | 1.730000e-132 | 483.0 |
13 | TraesCS6B01G169500 | chr1B | 88.764 | 89 | 9 | 1 | 3018 | 3106 | 390622291 | 390622378 | 1.220000e-19 | 108.0 |
14 | TraesCS6B01G169500 | chr1B | 86.869 | 99 | 10 | 3 | 336 | 433 | 549990461 | 549990365 | 1.220000e-19 | 108.0 |
15 | TraesCS6B01G169500 | chr3B | 94.751 | 362 | 15 | 1 | 1158 | 1515 | 739023592 | 739023231 | 7.770000e-156 | 560.0 |
16 | TraesCS6B01G169500 | chr3B | 94.839 | 310 | 15 | 1 | 3 | 311 | 284636042 | 284635733 | 1.730000e-132 | 483.0 |
17 | TraesCS6B01G169500 | chr3B | 94.175 | 309 | 18 | 0 | 3 | 311 | 31188029 | 31188337 | 3.740000e-129 | 472.0 |
18 | TraesCS6B01G169500 | chr3B | 83.499 | 503 | 64 | 12 | 433 | 931 | 139197336 | 139197823 | 4.880000e-123 | 451.0 |
19 | TraesCS6B01G169500 | chr3B | 86.466 | 133 | 17 | 1 | 303 | 434 | 715121077 | 715120945 | 9.270000e-31 | 145.0 |
20 | TraesCS6B01G169500 | chr5B | 89.095 | 431 | 40 | 5 | 457 | 882 | 369250841 | 369250413 | 2.190000e-146 | 529.0 |
21 | TraesCS6B01G169500 | chr5B | 88.471 | 425 | 44 | 4 | 457 | 878 | 458688585 | 458688163 | 2.850000e-140 | 508.0 |
22 | TraesCS6B01G169500 | chr5B | 94.498 | 309 | 17 | 0 | 3 | 311 | 566104248 | 566104556 | 8.050000e-131 | 477.0 |
23 | TraesCS6B01G169500 | chr5B | 87.121 | 132 | 15 | 2 | 303 | 432 | 592815569 | 592815700 | 7.170000e-32 | 148.0 |
24 | TraesCS6B01G169500 | chr5B | 88.764 | 89 | 9 | 1 | 3018 | 3106 | 176588380 | 176588293 | 1.220000e-19 | 108.0 |
25 | TraesCS6B01G169500 | chr7B | 87.973 | 449 | 43 | 6 | 433 | 878 | 637584338 | 637584778 | 1.320000e-143 | 520.0 |
26 | TraesCS6B01G169500 | chr7B | 88.836 | 421 | 39 | 6 | 457 | 873 | 667198658 | 667198242 | 7.930000e-141 | 510.0 |
27 | TraesCS6B01G169500 | chr7B | 94.516 | 310 | 16 | 1 | 3 | 311 | 592992448 | 592992757 | 8.050000e-131 | 477.0 |
28 | TraesCS6B01G169500 | chr7B | 87.727 | 220 | 26 | 1 | 1227 | 1446 | 635065268 | 635065486 | 4.100000e-64 | 255.0 |
29 | TraesCS6B01G169500 | chr7B | 87.273 | 220 | 27 | 1 | 1227 | 1446 | 635170861 | 635171079 | 1.910000e-62 | 250.0 |
30 | TraesCS6B01G169500 | chr5D | 87.805 | 451 | 45 | 7 | 433 | 880 | 254594077 | 254594520 | 1.320000e-143 | 520.0 |
31 | TraesCS6B01G169500 | chr5D | 88.764 | 89 | 9 | 1 | 3018 | 3106 | 164605001 | 164604914 | 1.220000e-19 | 108.0 |
32 | TraesCS6B01G169500 | chr4D | 88.453 | 433 | 42 | 7 | 457 | 884 | 40799368 | 40798939 | 1.710000e-142 | 516.0 |
33 | TraesCS6B01G169500 | chr4D | 86.667 | 135 | 15 | 3 | 303 | 435 | 493335956 | 493336089 | 2.580000e-31 | 147.0 |
34 | TraesCS6B01G169500 | chr4D | 89.888 | 89 | 8 | 1 | 3018 | 3106 | 296729548 | 296729461 | 2.610000e-21 | 113.0 |
35 | TraesCS6B01G169500 | chr7D | 88.128 | 438 | 41 | 5 | 433 | 867 | 568365559 | 568365988 | 7.930000e-141 | 510.0 |
36 | TraesCS6B01G169500 | chr7D | 87.615 | 218 | 27 | 0 | 1229 | 1446 | 575149320 | 575149103 | 1.480000e-63 | 254.0 |
37 | TraesCS6B01G169500 | chr7D | 87.264 | 212 | 27 | 0 | 1229 | 1440 | 575217792 | 575217581 | 3.200000e-60 | 243.0 |
38 | TraesCS6B01G169500 | chr7D | 88.764 | 89 | 9 | 1 | 3018 | 3106 | 375400762 | 375400849 | 1.220000e-19 | 108.0 |
39 | TraesCS6B01G169500 | chr2A | 87.583 | 451 | 43 | 6 | 433 | 880 | 136642770 | 136642330 | 7.930000e-141 | 510.0 |
40 | TraesCS6B01G169500 | chr2A | 89.552 | 134 | 11 | 2 | 303 | 434 | 728761389 | 728761521 | 1.980000e-37 | 167.0 |
41 | TraesCS6B01G169500 | chr2A | 87.755 | 98 | 9 | 3 | 336 | 433 | 682026180 | 682026086 | 9.400000e-21 | 111.0 |
42 | TraesCS6B01G169500 | chr4B | 83.630 | 562 | 57 | 14 | 303 | 839 | 497180741 | 497181292 | 2.220000e-136 | 496.0 |
43 | TraesCS6B01G169500 | chr4B | 89.888 | 89 | 8 | 1 | 3018 | 3106 | 366930302 | 366930215 | 2.610000e-21 | 113.0 |
44 | TraesCS6B01G169500 | chr4B | 84.615 | 104 | 12 | 4 | 3014 | 3116 | 142518821 | 142518921 | 2.040000e-17 | 100.0 |
45 | TraesCS6B01G169500 | chr7A | 88.406 | 207 | 24 | 0 | 1240 | 1446 | 664873423 | 664873217 | 1.910000e-62 | 250.0 |
46 | TraesCS6B01G169500 | chr7A | 88.095 | 210 | 21 | 4 | 1239 | 1446 | 664603389 | 664603596 | 2.470000e-61 | 246.0 |
47 | TraesCS6B01G169500 | chr7A | 86.058 | 208 | 29 | 0 | 1239 | 1446 | 664780906 | 664780699 | 1.160000e-54 | 224.0 |
48 | TraesCS6B01G169500 | chr1D | 89.888 | 89 | 8 | 1 | 3018 | 3106 | 305226293 | 305226380 | 2.610000e-21 | 113.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6B01G169500 | chr6B | 181470929 | 181474134 | 3205 | False | 5921.0 | 5921 | 100.0000 | 1 | 3206 | 1 | chr6B.!!$F1 | 3205 |
1 | TraesCS6B01G169500 | chr6D | 97262749 | 97265184 | 2435 | False | 1492.0 | 2335 | 88.5200 | 871 | 3206 | 2 | chr6D.!!$F2 | 2335 |
2 | TraesCS6B01G169500 | chr6A | 116336148 | 116338509 | 2361 | False | 1484.5 | 2228 | 91.0785 | 871 | 3106 | 2 | chr6A.!!$F2 | 2235 |
3 | TraesCS6B01G169500 | chr1B | 94574703 | 94575252 | 549 | False | 688.0 | 688 | 89.2280 | 321 | 875 | 1 | chr1B.!!$F3 | 554 |
4 | TraesCS6B01G169500 | chr4B | 497180741 | 497181292 | 551 | False | 496.0 | 496 | 83.6300 | 303 | 839 | 1 | chr4B.!!$F2 | 536 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
268 | 269 | 0.033920 | AGAGTTGCGATGTGCTCACA | 59.966 | 50.0 | 5.08 | 5.08 | 46.63 | 3.58 | F |
680 | 706 | 0.179043 | TGTGGGCGACTTGCTAAACA | 60.179 | 50.0 | 0.31 | 0.00 | 45.43 | 2.83 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1072 | 1109 | 0.034960 | GAGGAGAAAAGCTGGGGTCC | 60.035 | 60.0 | 0.0 | 0.0 | 0.0 | 4.46 | R |
2347 | 2438 | 0.249447 | TGTGACAAGCCAGTGAGACG | 60.249 | 55.0 | 0.0 | 0.0 | 0.0 | 4.18 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
19 | 20 | 2.983402 | CTGCAGTTGTCATTGTCTGG | 57.017 | 50.000 | 5.25 | 0.00 | 0.00 | 3.86 |
20 | 21 | 2.224606 | CTGCAGTTGTCATTGTCTGGT | 58.775 | 47.619 | 5.25 | 0.00 | 0.00 | 4.00 |
21 | 22 | 2.221169 | TGCAGTTGTCATTGTCTGGTC | 58.779 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
22 | 23 | 1.537202 | GCAGTTGTCATTGTCTGGTCC | 59.463 | 52.381 | 0.00 | 0.00 | 0.00 | 4.46 |
23 | 24 | 2.154462 | CAGTTGTCATTGTCTGGTCCC | 58.846 | 52.381 | 0.00 | 0.00 | 0.00 | 4.46 |
24 | 25 | 2.057922 | AGTTGTCATTGTCTGGTCCCT | 58.942 | 47.619 | 0.00 | 0.00 | 0.00 | 4.20 |
25 | 26 | 2.039084 | AGTTGTCATTGTCTGGTCCCTC | 59.961 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
26 | 27 | 2.030027 | TGTCATTGTCTGGTCCCTCT | 57.970 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
27 | 28 | 2.338809 | TGTCATTGTCTGGTCCCTCTT | 58.661 | 47.619 | 0.00 | 0.00 | 0.00 | 2.85 |
28 | 29 | 2.303022 | TGTCATTGTCTGGTCCCTCTTC | 59.697 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
29 | 30 | 1.909302 | TCATTGTCTGGTCCCTCTTCC | 59.091 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
30 | 31 | 1.630369 | CATTGTCTGGTCCCTCTTCCA | 59.370 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
31 | 32 | 2.044793 | TTGTCTGGTCCCTCTTCCAT | 57.955 | 50.000 | 0.00 | 0.00 | 33.01 | 3.41 |
32 | 33 | 1.279496 | TGTCTGGTCCCTCTTCCATG | 58.721 | 55.000 | 0.00 | 0.00 | 33.01 | 3.66 |
33 | 34 | 1.280457 | GTCTGGTCCCTCTTCCATGT | 58.720 | 55.000 | 0.00 | 0.00 | 33.01 | 3.21 |
34 | 35 | 1.630878 | GTCTGGTCCCTCTTCCATGTT | 59.369 | 52.381 | 0.00 | 0.00 | 33.01 | 2.71 |
35 | 36 | 1.909302 | TCTGGTCCCTCTTCCATGTTC | 59.091 | 52.381 | 0.00 | 0.00 | 33.01 | 3.18 |
36 | 37 | 1.630369 | CTGGTCCCTCTTCCATGTTCA | 59.370 | 52.381 | 0.00 | 0.00 | 33.01 | 3.18 |
37 | 38 | 2.240667 | CTGGTCCCTCTTCCATGTTCAT | 59.759 | 50.000 | 0.00 | 0.00 | 33.01 | 2.57 |
38 | 39 | 2.649312 | TGGTCCCTCTTCCATGTTCATT | 59.351 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
39 | 40 | 3.075882 | TGGTCCCTCTTCCATGTTCATTT | 59.924 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
40 | 41 | 4.290985 | TGGTCCCTCTTCCATGTTCATTTA | 59.709 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
41 | 42 | 5.222233 | TGGTCCCTCTTCCATGTTCATTTAA | 60.222 | 40.000 | 0.00 | 0.00 | 0.00 | 1.52 |
42 | 43 | 5.125578 | GGTCCCTCTTCCATGTTCATTTAAC | 59.874 | 44.000 | 0.00 | 0.00 | 38.67 | 2.01 |
43 | 44 | 5.946377 | GTCCCTCTTCCATGTTCATTTAACT | 59.054 | 40.000 | 0.00 | 0.00 | 38.99 | 2.24 |
44 | 45 | 5.945784 | TCCCTCTTCCATGTTCATTTAACTG | 59.054 | 40.000 | 0.00 | 0.00 | 38.99 | 3.16 |
45 | 46 | 5.393461 | CCCTCTTCCATGTTCATTTAACTGC | 60.393 | 44.000 | 0.00 | 0.00 | 38.99 | 4.40 |
46 | 47 | 5.183713 | CCTCTTCCATGTTCATTTAACTGCA | 59.816 | 40.000 | 0.00 | 0.00 | 38.99 | 4.41 |
47 | 48 | 6.258230 | TCTTCCATGTTCATTTAACTGCAG | 57.742 | 37.500 | 13.48 | 13.48 | 38.99 | 4.41 |
48 | 49 | 5.769662 | TCTTCCATGTTCATTTAACTGCAGT | 59.230 | 36.000 | 15.25 | 15.25 | 38.99 | 4.40 |
49 | 50 | 6.265196 | TCTTCCATGTTCATTTAACTGCAGTT | 59.735 | 34.615 | 32.97 | 32.97 | 38.99 | 3.16 |
50 | 51 | 5.771469 | TCCATGTTCATTTAACTGCAGTTG | 58.229 | 37.500 | 36.50 | 23.43 | 38.90 | 3.16 |
51 | 52 | 4.386652 | CCATGTTCATTTAACTGCAGTTGC | 59.613 | 41.667 | 36.50 | 19.02 | 38.90 | 4.17 |
52 | 53 | 3.976169 | TGTTCATTTAACTGCAGTTGCC | 58.024 | 40.909 | 36.50 | 17.24 | 38.90 | 4.52 |
53 | 54 | 3.382865 | TGTTCATTTAACTGCAGTTGCCA | 59.617 | 39.130 | 36.50 | 22.26 | 38.90 | 4.92 |
54 | 55 | 4.039004 | TGTTCATTTAACTGCAGTTGCCAT | 59.961 | 37.500 | 36.50 | 23.31 | 38.90 | 4.40 |
55 | 56 | 4.177165 | TCATTTAACTGCAGTTGCCATG | 57.823 | 40.909 | 36.50 | 30.50 | 41.18 | 3.66 |
56 | 57 | 3.573538 | TCATTTAACTGCAGTTGCCATGT | 59.426 | 39.130 | 36.50 | 15.57 | 41.18 | 3.21 |
57 | 58 | 3.641437 | TTTAACTGCAGTTGCCATGTC | 57.359 | 42.857 | 36.50 | 0.00 | 41.18 | 3.06 |
58 | 59 | 1.155889 | TAACTGCAGTTGCCATGTCG | 58.844 | 50.000 | 36.50 | 0.67 | 41.18 | 4.35 |
59 | 60 | 2.133742 | AACTGCAGTTGCCATGTCGC | 62.134 | 55.000 | 30.66 | 0.00 | 41.18 | 5.19 |
60 | 61 | 2.281692 | TGCAGTTGCCATGTCGCT | 60.282 | 55.556 | 1.06 | 0.00 | 41.18 | 4.93 |
61 | 62 | 2.177531 | GCAGTTGCCATGTCGCTG | 59.822 | 61.111 | 0.00 | 0.00 | 34.31 | 5.18 |
62 | 63 | 2.327343 | GCAGTTGCCATGTCGCTGA | 61.327 | 57.895 | 2.90 | 0.00 | 34.31 | 4.26 |
63 | 64 | 1.855213 | GCAGTTGCCATGTCGCTGAA | 61.855 | 55.000 | 2.90 | 0.00 | 34.31 | 3.02 |
64 | 65 | 0.110056 | CAGTTGCCATGTCGCTGAAC | 60.110 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
65 | 66 | 0.250467 | AGTTGCCATGTCGCTGAACT | 60.250 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
66 | 67 | 1.001974 | AGTTGCCATGTCGCTGAACTA | 59.998 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
67 | 68 | 1.128692 | GTTGCCATGTCGCTGAACTAC | 59.871 | 52.381 | 0.00 | 0.00 | 0.00 | 2.73 |
68 | 69 | 0.735978 | TGCCATGTCGCTGAACTACG | 60.736 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
69 | 70 | 1.421410 | GCCATGTCGCTGAACTACGG | 61.421 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
70 | 71 | 0.108804 | CCATGTCGCTGAACTACGGT | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 4.83 |
71 | 72 | 1.671850 | CCATGTCGCTGAACTACGGTT | 60.672 | 52.381 | 0.00 | 0.00 | 38.52 | 4.44 |
72 | 73 | 1.390123 | CATGTCGCTGAACTACGGTTG | 59.610 | 52.381 | 0.00 | 0.00 | 35.58 | 3.77 |
73 | 74 | 0.942410 | TGTCGCTGAACTACGGTTGC | 60.942 | 55.000 | 0.00 | 0.00 | 35.58 | 4.17 |
74 | 75 | 1.373748 | TCGCTGAACTACGGTTGCC | 60.374 | 57.895 | 0.00 | 0.00 | 35.58 | 4.52 |
75 | 76 | 1.666553 | CGCTGAACTACGGTTGCCA | 60.667 | 57.895 | 0.00 | 0.00 | 35.58 | 4.92 |
76 | 77 | 1.019278 | CGCTGAACTACGGTTGCCAT | 61.019 | 55.000 | 0.00 | 0.00 | 35.58 | 4.40 |
77 | 78 | 0.447801 | GCTGAACTACGGTTGCCATG | 59.552 | 55.000 | 0.00 | 0.00 | 35.58 | 3.66 |
78 | 79 | 1.808411 | CTGAACTACGGTTGCCATGT | 58.192 | 50.000 | 0.00 | 0.00 | 35.58 | 3.21 |
79 | 80 | 1.732259 | CTGAACTACGGTTGCCATGTC | 59.268 | 52.381 | 0.00 | 0.00 | 35.58 | 3.06 |
80 | 81 | 0.719465 | GAACTACGGTTGCCATGTCG | 59.281 | 55.000 | 0.00 | 0.00 | 35.58 | 4.35 |
81 | 82 | 0.672401 | AACTACGGTTGCCATGTCGG | 60.672 | 55.000 | 0.00 | 0.00 | 33.96 | 4.79 |
82 | 83 | 1.216977 | CTACGGTTGCCATGTCGGA | 59.783 | 57.895 | 0.00 | 0.00 | 36.56 | 4.55 |
83 | 84 | 1.079681 | TACGGTTGCCATGTCGGAC | 60.080 | 57.895 | 0.00 | 0.00 | 36.56 | 4.79 |
84 | 85 | 1.817911 | TACGGTTGCCATGTCGGACA | 61.818 | 55.000 | 14.01 | 14.01 | 36.56 | 4.02 |
85 | 86 | 1.963855 | CGGTTGCCATGTCGGACAA | 60.964 | 57.895 | 15.72 | 0.00 | 36.56 | 3.18 |
86 | 87 | 1.579429 | GGTTGCCATGTCGGACAAC | 59.421 | 57.895 | 15.72 | 8.08 | 44.46 | 3.32 |
87 | 88 | 0.889186 | GGTTGCCATGTCGGACAACT | 60.889 | 55.000 | 15.72 | 0.00 | 44.53 | 3.16 |
88 | 89 | 1.609580 | GGTTGCCATGTCGGACAACTA | 60.610 | 52.381 | 15.72 | 2.39 | 44.53 | 2.24 |
89 | 90 | 1.463444 | GTTGCCATGTCGGACAACTAC | 59.537 | 52.381 | 15.72 | 10.65 | 43.12 | 2.73 |
90 | 91 | 0.682292 | TGCCATGTCGGACAACTACA | 59.318 | 50.000 | 15.72 | 8.46 | 36.56 | 2.74 |
91 | 92 | 1.337728 | TGCCATGTCGGACAACTACAG | 60.338 | 52.381 | 15.72 | 1.98 | 36.56 | 2.74 |
92 | 93 | 1.337823 | GCCATGTCGGACAACTACAGT | 60.338 | 52.381 | 15.72 | 0.00 | 36.56 | 3.55 |
93 | 94 | 2.870435 | GCCATGTCGGACAACTACAGTT | 60.870 | 50.000 | 15.72 | 0.00 | 36.12 | 3.16 |
104 | 105 | 1.247567 | ACTACAGTTGCCATGGTTGC | 58.752 | 50.000 | 14.67 | 3.52 | 0.00 | 4.17 |
105 | 106 | 1.202927 | ACTACAGTTGCCATGGTTGCT | 60.203 | 47.619 | 14.67 | 5.95 | 0.00 | 3.91 |
106 | 107 | 1.470098 | CTACAGTTGCCATGGTTGCTC | 59.530 | 52.381 | 14.67 | 0.00 | 0.00 | 4.26 |
107 | 108 | 0.467844 | ACAGTTGCCATGGTTGCTCA | 60.468 | 50.000 | 14.67 | 0.00 | 0.00 | 4.26 |
108 | 109 | 0.675083 | CAGTTGCCATGGTTGCTCAA | 59.325 | 50.000 | 14.67 | 5.59 | 0.00 | 3.02 |
109 | 110 | 0.675633 | AGTTGCCATGGTTGCTCAAC | 59.324 | 50.000 | 19.02 | 19.02 | 40.45 | 3.18 |
110 | 111 | 0.675633 | GTTGCCATGGTTGCTCAACT | 59.324 | 50.000 | 19.25 | 0.00 | 40.94 | 3.16 |
111 | 112 | 0.675083 | TTGCCATGGTTGCTCAACTG | 59.325 | 50.000 | 14.67 | 4.33 | 40.94 | 3.16 |
112 | 113 | 1.080298 | GCCATGGTTGCTCAACTGC | 60.080 | 57.895 | 14.67 | 6.92 | 40.94 | 4.40 |
113 | 114 | 1.808531 | GCCATGGTTGCTCAACTGCA | 61.809 | 55.000 | 14.67 | 3.93 | 40.94 | 4.41 |
114 | 115 | 0.242825 | CCATGGTTGCTCAACTGCAG | 59.757 | 55.000 | 13.48 | 13.48 | 44.27 | 4.41 |
115 | 116 | 0.956633 | CATGGTTGCTCAACTGCAGT | 59.043 | 50.000 | 15.25 | 15.25 | 44.27 | 4.40 |
116 | 117 | 1.338973 | CATGGTTGCTCAACTGCAGTT | 59.661 | 47.619 | 26.36 | 26.36 | 44.27 | 3.16 |
129 | 130 | 5.362556 | AACTGCAGTTGTCATGTATGTTC | 57.637 | 39.130 | 30.66 | 0.00 | 36.80 | 3.18 |
130 | 131 | 4.645535 | ACTGCAGTTGTCATGTATGTTCT | 58.354 | 39.130 | 15.25 | 0.00 | 0.00 | 3.01 |
131 | 132 | 4.453478 | ACTGCAGTTGTCATGTATGTTCTG | 59.547 | 41.667 | 15.25 | 0.00 | 0.00 | 3.02 |
132 | 133 | 3.752747 | TGCAGTTGTCATGTATGTTCTGG | 59.247 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
133 | 134 | 3.753272 | GCAGTTGTCATGTATGTTCTGGT | 59.247 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
134 | 135 | 4.142816 | GCAGTTGTCATGTATGTTCTGGTC | 60.143 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
135 | 136 | 5.240891 | CAGTTGTCATGTATGTTCTGGTCT | 58.759 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
136 | 137 | 6.398095 | CAGTTGTCATGTATGTTCTGGTCTA | 58.602 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
137 | 138 | 6.311445 | CAGTTGTCATGTATGTTCTGGTCTAC | 59.689 | 42.308 | 0.00 | 0.00 | 0.00 | 2.59 |
138 | 139 | 6.211584 | AGTTGTCATGTATGTTCTGGTCTACT | 59.788 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
139 | 140 | 5.965922 | TGTCATGTATGTTCTGGTCTACTG | 58.034 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
140 | 141 | 4.806247 | GTCATGTATGTTCTGGTCTACTGC | 59.194 | 45.833 | 0.00 | 0.00 | 0.00 | 4.40 |
141 | 142 | 4.466015 | TCATGTATGTTCTGGTCTACTGCA | 59.534 | 41.667 | 0.00 | 0.00 | 0.00 | 4.41 |
142 | 143 | 4.456280 | TGTATGTTCTGGTCTACTGCAG | 57.544 | 45.455 | 13.48 | 13.48 | 0.00 | 4.41 |
143 | 144 | 3.832490 | TGTATGTTCTGGTCTACTGCAGT | 59.168 | 43.478 | 25.12 | 25.12 | 0.00 | 4.40 |
144 | 145 | 4.283467 | TGTATGTTCTGGTCTACTGCAGTT | 59.717 | 41.667 | 27.06 | 9.41 | 0.00 | 3.16 |
145 | 146 | 3.111853 | TGTTCTGGTCTACTGCAGTTG | 57.888 | 47.619 | 27.06 | 23.41 | 0.00 | 3.16 |
146 | 147 | 1.801178 | GTTCTGGTCTACTGCAGTTGC | 59.199 | 52.381 | 27.06 | 17.71 | 42.50 | 4.17 |
147 | 148 | 0.321671 | TCTGGTCTACTGCAGTTGCC | 59.678 | 55.000 | 27.06 | 25.05 | 41.18 | 4.52 |
148 | 149 | 0.035317 | CTGGTCTACTGCAGTTGCCA | 59.965 | 55.000 | 28.04 | 28.04 | 41.18 | 4.92 |
149 | 150 | 0.692476 | TGGTCTACTGCAGTTGCCAT | 59.308 | 50.000 | 27.06 | 0.12 | 41.18 | 4.40 |
150 | 151 | 1.089920 | GGTCTACTGCAGTTGCCATG | 58.910 | 55.000 | 27.06 | 8.76 | 41.18 | 3.66 |
151 | 152 | 1.339055 | GGTCTACTGCAGTTGCCATGA | 60.339 | 52.381 | 27.06 | 10.89 | 41.18 | 3.07 |
152 | 153 | 2.636830 | GTCTACTGCAGTTGCCATGAT | 58.363 | 47.619 | 27.06 | 0.00 | 41.18 | 2.45 |
153 | 154 | 3.012518 | GTCTACTGCAGTTGCCATGATT | 58.987 | 45.455 | 27.06 | 0.00 | 41.18 | 2.57 |
154 | 155 | 3.441572 | GTCTACTGCAGTTGCCATGATTT | 59.558 | 43.478 | 27.06 | 0.00 | 41.18 | 2.17 |
155 | 156 | 3.691118 | TCTACTGCAGTTGCCATGATTTC | 59.309 | 43.478 | 27.06 | 0.00 | 41.18 | 2.17 |
156 | 157 | 2.241160 | ACTGCAGTTGCCATGATTTCA | 58.759 | 42.857 | 15.25 | 0.00 | 41.18 | 2.69 |
157 | 158 | 2.629137 | ACTGCAGTTGCCATGATTTCAA | 59.371 | 40.909 | 15.25 | 0.00 | 41.18 | 2.69 |
158 | 159 | 3.069872 | ACTGCAGTTGCCATGATTTCAAA | 59.930 | 39.130 | 15.25 | 0.00 | 41.18 | 2.69 |
159 | 160 | 4.059511 | CTGCAGTTGCCATGATTTCAAAA | 58.940 | 39.130 | 5.25 | 0.00 | 41.18 | 2.44 |
160 | 161 | 3.808726 | TGCAGTTGCCATGATTTCAAAAC | 59.191 | 39.130 | 1.06 | 0.00 | 41.18 | 2.43 |
161 | 162 | 4.060205 | GCAGTTGCCATGATTTCAAAACT | 58.940 | 39.130 | 0.00 | 0.00 | 34.31 | 2.66 |
162 | 163 | 4.512571 | GCAGTTGCCATGATTTCAAAACTT | 59.487 | 37.500 | 0.00 | 0.00 | 34.31 | 2.66 |
163 | 164 | 5.007921 | GCAGTTGCCATGATTTCAAAACTTT | 59.992 | 36.000 | 0.00 | 0.00 | 34.31 | 2.66 |
164 | 165 | 6.202570 | GCAGTTGCCATGATTTCAAAACTTTA | 59.797 | 34.615 | 0.00 | 0.00 | 34.31 | 1.85 |
165 | 166 | 7.569957 | GCAGTTGCCATGATTTCAAAACTTTAG | 60.570 | 37.037 | 0.00 | 0.00 | 34.31 | 1.85 |
166 | 167 | 6.930722 | AGTTGCCATGATTTCAAAACTTTAGG | 59.069 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
167 | 168 | 6.662865 | TGCCATGATTTCAAAACTTTAGGA | 57.337 | 33.333 | 0.00 | 0.00 | 0.00 | 2.94 |
168 | 169 | 6.690530 | TGCCATGATTTCAAAACTTTAGGAG | 58.309 | 36.000 | 0.00 | 0.00 | 0.00 | 3.69 |
169 | 170 | 6.267471 | TGCCATGATTTCAAAACTTTAGGAGT | 59.733 | 34.615 | 0.00 | 0.00 | 41.47 | 3.85 |
179 | 180 | 3.697619 | ACTTTAGGAGTTGCCACCTAC | 57.302 | 47.619 | 0.00 | 0.00 | 38.31 | 3.18 |
180 | 181 | 3.248888 | ACTTTAGGAGTTGCCACCTACT | 58.751 | 45.455 | 0.00 | 0.00 | 38.31 | 2.57 |
181 | 182 | 4.422984 | ACTTTAGGAGTTGCCACCTACTA | 58.577 | 43.478 | 0.00 | 0.00 | 38.31 | 1.82 |
182 | 183 | 4.842380 | ACTTTAGGAGTTGCCACCTACTAA | 59.158 | 41.667 | 0.00 | 0.00 | 38.31 | 2.24 |
183 | 184 | 4.813750 | TTAGGAGTTGCCACCTACTAAC | 57.186 | 45.455 | 0.00 | 0.00 | 38.31 | 2.34 |
184 | 185 | 2.616524 | AGGAGTTGCCACCTACTAACA | 58.383 | 47.619 | 0.00 | 0.00 | 40.02 | 2.41 |
185 | 186 | 2.302157 | AGGAGTTGCCACCTACTAACAC | 59.698 | 50.000 | 0.00 | 0.00 | 40.02 | 3.32 |
186 | 187 | 2.302157 | GGAGTTGCCACCTACTAACACT | 59.698 | 50.000 | 0.00 | 0.00 | 36.34 | 3.55 |
187 | 188 | 3.512724 | GGAGTTGCCACCTACTAACACTA | 59.487 | 47.826 | 0.00 | 0.00 | 36.34 | 2.74 |
188 | 189 | 4.381718 | GGAGTTGCCACCTACTAACACTAG | 60.382 | 50.000 | 0.00 | 0.00 | 36.34 | 2.57 |
189 | 190 | 3.514309 | AGTTGCCACCTACTAACACTAGG | 59.486 | 47.826 | 0.00 | 0.00 | 37.40 | 3.02 |
190 | 191 | 1.829222 | TGCCACCTACTAACACTAGGC | 59.171 | 52.381 | 0.00 | 0.00 | 41.15 | 3.93 |
191 | 192 | 1.829222 | GCCACCTACTAACACTAGGCA | 59.171 | 52.381 | 0.00 | 0.00 | 40.50 | 4.75 |
192 | 193 | 2.159085 | GCCACCTACTAACACTAGGCAG | 60.159 | 54.545 | 0.00 | 0.00 | 40.50 | 4.85 |
193 | 194 | 3.097614 | CCACCTACTAACACTAGGCAGT | 58.902 | 50.000 | 0.00 | 0.00 | 35.04 | 4.40 |
194 | 195 | 3.514309 | CCACCTACTAACACTAGGCAGTT | 59.486 | 47.826 | 0.00 | 0.00 | 35.04 | 3.16 |
195 | 196 | 4.495422 | CACCTACTAACACTAGGCAGTTG | 58.505 | 47.826 | 7.49 | 0.73 | 35.04 | 3.16 |
196 | 197 | 3.056035 | ACCTACTAACACTAGGCAGTTGC | 60.056 | 47.826 | 7.49 | 0.00 | 35.04 | 4.17 |
210 | 211 | 3.466836 | GCAGTTGCCATATAGCACTACA | 58.533 | 45.455 | 0.00 | 0.00 | 43.97 | 2.74 |
211 | 212 | 3.876914 | GCAGTTGCCATATAGCACTACAA | 59.123 | 43.478 | 0.00 | 0.00 | 43.97 | 2.41 |
212 | 213 | 4.335315 | GCAGTTGCCATATAGCACTACAAA | 59.665 | 41.667 | 0.00 | 0.00 | 43.97 | 2.83 |
213 | 214 | 5.163663 | GCAGTTGCCATATAGCACTACAAAA | 60.164 | 40.000 | 0.00 | 0.00 | 43.97 | 2.44 |
214 | 215 | 6.624861 | GCAGTTGCCATATAGCACTACAAAAA | 60.625 | 38.462 | 0.00 | 0.00 | 43.97 | 1.94 |
249 | 250 | 6.702716 | AAAAACATGTTCGGGTAAAAGAGA | 57.297 | 33.333 | 12.39 | 0.00 | 0.00 | 3.10 |
250 | 251 | 5.941948 | AAACATGTTCGGGTAAAAGAGAG | 57.058 | 39.130 | 12.39 | 0.00 | 0.00 | 3.20 |
251 | 252 | 4.884668 | ACATGTTCGGGTAAAAGAGAGA | 57.115 | 40.909 | 0.00 | 0.00 | 0.00 | 3.10 |
252 | 253 | 4.822026 | ACATGTTCGGGTAAAAGAGAGAG | 58.178 | 43.478 | 0.00 | 0.00 | 0.00 | 3.20 |
253 | 254 | 4.283722 | ACATGTTCGGGTAAAAGAGAGAGT | 59.716 | 41.667 | 0.00 | 0.00 | 0.00 | 3.24 |
254 | 255 | 4.950205 | TGTTCGGGTAAAAGAGAGAGTT | 57.050 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
255 | 256 | 4.628074 | TGTTCGGGTAAAAGAGAGAGTTG | 58.372 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
256 | 257 | 3.314541 | TCGGGTAAAAGAGAGAGTTGC | 57.685 | 47.619 | 0.00 | 0.00 | 0.00 | 4.17 |
257 | 258 | 1.993370 | CGGGTAAAAGAGAGAGTTGCG | 59.007 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
258 | 259 | 2.352421 | CGGGTAAAAGAGAGAGTTGCGA | 60.352 | 50.000 | 0.00 | 0.00 | 0.00 | 5.10 |
259 | 260 | 3.676324 | CGGGTAAAAGAGAGAGTTGCGAT | 60.676 | 47.826 | 0.00 | 0.00 | 0.00 | 4.58 |
260 | 261 | 3.619038 | GGGTAAAAGAGAGAGTTGCGATG | 59.381 | 47.826 | 0.00 | 0.00 | 0.00 | 3.84 |
261 | 262 | 4.246458 | GGTAAAAGAGAGAGTTGCGATGT | 58.754 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
262 | 263 | 4.092091 | GGTAAAAGAGAGAGTTGCGATGTG | 59.908 | 45.833 | 0.00 | 0.00 | 0.00 | 3.21 |
263 | 264 | 1.719600 | AAGAGAGAGTTGCGATGTGC | 58.280 | 50.000 | 0.00 | 0.00 | 46.70 | 4.57 |
264 | 265 | 0.894141 | AGAGAGAGTTGCGATGTGCT | 59.106 | 50.000 | 0.00 | 0.00 | 46.63 | 4.40 |
265 | 266 | 1.135141 | AGAGAGAGTTGCGATGTGCTC | 60.135 | 52.381 | 0.00 | 0.00 | 46.63 | 4.26 |
266 | 267 | 0.605083 | AGAGAGTTGCGATGTGCTCA | 59.395 | 50.000 | 0.00 | 0.00 | 46.63 | 4.26 |
267 | 268 | 0.718343 | GAGAGTTGCGATGTGCTCAC | 59.282 | 55.000 | 0.00 | 0.00 | 46.63 | 3.51 |
268 | 269 | 0.033920 | AGAGTTGCGATGTGCTCACA | 59.966 | 50.000 | 5.08 | 5.08 | 46.63 | 3.58 |
269 | 270 | 0.867746 | GAGTTGCGATGTGCTCACAA | 59.132 | 50.000 | 6.81 | 0.00 | 45.41 | 3.33 |
270 | 271 | 0.870393 | AGTTGCGATGTGCTCACAAG | 59.130 | 50.000 | 6.81 | 5.77 | 45.41 | 3.16 |
280 | 281 | 4.192000 | CTCACAAGCACGCTAGGG | 57.808 | 61.111 | 5.05 | 5.05 | 0.00 | 3.53 |
288 | 289 | 2.046892 | CACGCTAGGGCAGTTGCT | 60.047 | 61.111 | 6.73 | 0.00 | 41.70 | 3.91 |
289 | 290 | 1.218047 | CACGCTAGGGCAGTTGCTA | 59.782 | 57.895 | 6.73 | 0.00 | 41.70 | 3.49 |
290 | 291 | 0.179073 | CACGCTAGGGCAGTTGCTAT | 60.179 | 55.000 | 6.73 | 0.00 | 41.70 | 2.97 |
291 | 292 | 0.179073 | ACGCTAGGGCAGTTGCTATG | 60.179 | 55.000 | 6.73 | 0.00 | 41.70 | 2.23 |
292 | 293 | 0.179073 | CGCTAGGGCAGTTGCTATGT | 60.179 | 55.000 | 3.88 | 0.00 | 41.70 | 2.29 |
293 | 294 | 1.068588 | CGCTAGGGCAGTTGCTATGTA | 59.931 | 52.381 | 3.88 | 0.00 | 41.70 | 2.29 |
294 | 295 | 2.483013 | CGCTAGGGCAGTTGCTATGTAA | 60.483 | 50.000 | 3.88 | 0.00 | 41.70 | 2.41 |
295 | 296 | 3.541632 | GCTAGGGCAGTTGCTATGTAAA | 58.458 | 45.455 | 3.88 | 0.00 | 41.70 | 2.01 |
296 | 297 | 3.945285 | GCTAGGGCAGTTGCTATGTAAAA | 59.055 | 43.478 | 3.88 | 0.00 | 41.70 | 1.52 |
297 | 298 | 4.398044 | GCTAGGGCAGTTGCTATGTAAAAA | 59.602 | 41.667 | 3.88 | 0.00 | 41.70 | 1.94 |
319 | 320 | 5.712152 | AAAAGAGTTGCCATGTAAAGGAG | 57.288 | 39.130 | 0.00 | 0.00 | 0.00 | 3.69 |
323 | 325 | 5.006386 | AGAGTTGCCATGTAAAGGAGAAAG | 58.994 | 41.667 | 0.00 | 0.00 | 0.00 | 2.62 |
326 | 328 | 2.819608 | TGCCATGTAAAGGAGAAAGCAC | 59.180 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
330 | 332 | 4.460382 | CCATGTAAAGGAGAAAGCACATGT | 59.540 | 41.667 | 10.56 | 0.00 | 40.90 | 3.21 |
397 | 401 | 1.533625 | GCAGTTGCCATGTACCTTGA | 58.466 | 50.000 | 0.00 | 0.00 | 34.31 | 3.02 |
415 | 419 | 2.499197 | TGAAGAAACGCATGGCAACTA | 58.501 | 42.857 | 0.00 | 0.00 | 37.61 | 2.24 |
420 | 424 | 0.240945 | AACGCATGGCAACTAACAGC | 59.759 | 50.000 | 0.00 | 0.00 | 37.61 | 4.40 |
476 | 480 | 2.172505 | TGGCAGTTACCATCTACCATGG | 59.827 | 50.000 | 11.19 | 11.19 | 44.54 | 3.66 |
481 | 485 | 5.066505 | GCAGTTACCATCTACCATGGAAAAG | 59.933 | 44.000 | 21.47 | 12.67 | 41.64 | 2.27 |
482 | 486 | 6.180472 | CAGTTACCATCTACCATGGAAAAGT | 58.820 | 40.000 | 21.47 | 10.16 | 41.64 | 2.66 |
525 | 529 | 5.698089 | CAGAGAGTTGACATCTGCTTACAAA | 59.302 | 40.000 | 4.22 | 0.00 | 34.55 | 2.83 |
530 | 534 | 6.265577 | AGTTGACATCTGCTTACAAACAAAC | 58.734 | 36.000 | 0.00 | 0.00 | 0.00 | 2.93 |
622 | 646 | 1.732259 | GCGTGTGGGTGAAGTGATAAG | 59.268 | 52.381 | 0.00 | 0.00 | 0.00 | 1.73 |
644 | 670 | 2.745698 | CACACCAGCCTCTCTGCA | 59.254 | 61.111 | 0.00 | 0.00 | 41.50 | 4.41 |
670 | 696 | 1.381165 | AAAACTGGTGTGTGGGCGAC | 61.381 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
680 | 706 | 0.179043 | TGTGGGCGACTTGCTAAACA | 60.179 | 50.000 | 0.31 | 0.00 | 45.43 | 2.83 |
693 | 719 | 1.749286 | GCTAAACACCCACACACCAGT | 60.749 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
697 | 723 | 1.227943 | CACCCACACACCAGTCCTG | 60.228 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
698 | 724 | 1.692749 | ACCCACACACCAGTCCTGT | 60.693 | 57.895 | 0.00 | 0.00 | 0.00 | 4.00 |
732 | 758 | 4.295119 | ACGTGTGGGCGACTGGAC | 62.295 | 66.667 | 0.31 | 0.00 | 35.59 | 4.02 |
749 | 775 | 1.003839 | ACGAATGCCCACACACGAT | 60.004 | 52.632 | 0.00 | 0.00 | 33.71 | 3.73 |
764 | 790 | 0.323178 | ACGATCCCAGTCCTACGTGT | 60.323 | 55.000 | 0.00 | 0.00 | 32.93 | 4.49 |
814 | 840 | 0.396435 | TCGTGCAGAAGTGGTTGGAT | 59.604 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
818 | 844 | 1.699083 | TGCAGAAGTGGTTGGATGAGA | 59.301 | 47.619 | 0.00 | 0.00 | 0.00 | 3.27 |
832 | 858 | 2.554142 | GATGAGAATCCATGCGTGTGA | 58.446 | 47.619 | 4.96 | 2.39 | 0.00 | 3.58 |
875 | 901 | 2.285950 | CGTGTGGGCGTTAATATTTCCG | 60.286 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
884 | 910 | 8.848182 | TGGGCGTTAATATTTCCGTAAAAATAT | 58.152 | 29.630 | 0.00 | 0.00 | 41.40 | 1.28 |
973 | 1001 | 4.351127 | CCCCCTACGCCTCTATAAAGTAT | 58.649 | 47.826 | 0.00 | 0.00 | 0.00 | 2.12 |
974 | 1002 | 5.513233 | CCCCCTACGCCTCTATAAAGTATA | 58.487 | 45.833 | 0.00 | 0.00 | 0.00 | 1.47 |
981 | 1009 | 4.940046 | CGCCTCTATAAAGTATAGGACGGA | 59.060 | 45.833 | 0.00 | 0.00 | 38.88 | 4.69 |
1028 | 1060 | 0.738389 | CCGTCCACTGCAAACAAACT | 59.262 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
1029 | 1061 | 1.268539 | CCGTCCACTGCAAACAAACTC | 60.269 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
1030 | 1062 | 1.670811 | CGTCCACTGCAAACAAACTCT | 59.329 | 47.619 | 0.00 | 0.00 | 0.00 | 3.24 |
1066 | 1103 | 4.862823 | CTCCCTCCCTCCGTCCCC | 62.863 | 77.778 | 0.00 | 0.00 | 0.00 | 4.81 |
1093 | 1130 | 0.476611 | ACCCCAGCTTTTCTCCTCCT | 60.477 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
1094 | 1131 | 0.254462 | CCCCAGCTTTTCTCCTCCTC | 59.746 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1095 | 1132 | 0.254462 | CCCAGCTTTTCTCCTCCTCC | 59.746 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1224 | 1261 | 4.717629 | CGAAGCAGGCGTCCACGA | 62.718 | 66.667 | 2.58 | 0.00 | 43.02 | 4.35 |
1514 | 1570 | 2.993853 | CTGGAGAACTCTGCCCCC | 59.006 | 66.667 | 1.86 | 0.00 | 32.95 | 5.40 |
1592 | 1648 | 1.476845 | TACAGTGGCAGGCCGAAGAA | 61.477 | 55.000 | 5.74 | 0.00 | 39.42 | 2.52 |
1624 | 1684 | 2.158143 | AGCGAGGGTTAGGATAGGGATT | 60.158 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1625 | 1685 | 3.077088 | AGCGAGGGTTAGGATAGGGATTA | 59.923 | 47.826 | 0.00 | 0.00 | 0.00 | 1.75 |
1711 | 1771 | 3.057586 | TGTTCCTTTTTCACCCCCTCTA | 58.942 | 45.455 | 0.00 | 0.00 | 0.00 | 2.43 |
1727 | 1787 | 5.071115 | CCCCCTCTAGTTCTAGGAATTTCAG | 59.929 | 48.000 | 6.96 | 0.00 | 34.58 | 3.02 |
1728 | 1788 | 5.663556 | CCCCTCTAGTTCTAGGAATTTCAGT | 59.336 | 44.000 | 6.96 | 0.00 | 34.58 | 3.41 |
1766 | 1826 | 1.005332 | TGTGTGAGGGAGAGAGAGAGG | 59.995 | 57.143 | 0.00 | 0.00 | 0.00 | 3.69 |
1768 | 1828 | 0.923358 | GTGAGGGAGAGAGAGAGGGA | 59.077 | 60.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1769 | 1829 | 1.133792 | GTGAGGGAGAGAGAGAGGGAG | 60.134 | 61.905 | 0.00 | 0.00 | 0.00 | 4.30 |
1772 | 1833 | 0.106217 | GGGAGAGAGAGAGGGAGGTG | 60.106 | 65.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1781 | 1842 | 1.964933 | GAGAGGGAGGTGGTAGTATGC | 59.035 | 57.143 | 0.00 | 0.00 | 0.00 | 3.14 |
1808 | 1870 | 4.079253 | GTGCTAGGGATTTTGAGGTTTCA | 58.921 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
1824 | 1886 | 7.227873 | TGAGGTTTCAGTGTTAACCATATGAA | 58.772 | 34.615 | 22.88 | 5.61 | 44.99 | 2.57 |
1895 | 1962 | 2.936993 | GCACTACACATTGGTCTCCCTG | 60.937 | 54.545 | 0.00 | 0.00 | 0.00 | 4.45 |
1905 | 1972 | 1.641192 | TGGTCTCCCTGCTTCTCTCTA | 59.359 | 52.381 | 0.00 | 0.00 | 0.00 | 2.43 |
1906 | 1973 | 2.028876 | GGTCTCCCTGCTTCTCTCTAC | 58.971 | 57.143 | 0.00 | 0.00 | 0.00 | 2.59 |
1985 | 2054 | 5.600908 | TGAATTCCTCGAAAGTTTTACGG | 57.399 | 39.130 | 2.27 | 0.00 | 0.00 | 4.02 |
1986 | 2055 | 5.058490 | TGAATTCCTCGAAAGTTTTACGGT | 58.942 | 37.500 | 2.27 | 0.00 | 0.00 | 4.83 |
2067 | 2136 | 7.396540 | ACATTGTTATCCTCTGGTTCATTTC | 57.603 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2079 | 2148 | 5.244402 | TCTGGTTCATTTCACTGAATTGCAT | 59.756 | 36.000 | 8.28 | 0.00 | 37.47 | 3.96 |
2080 | 2149 | 5.472148 | TGGTTCATTTCACTGAATTGCATC | 58.528 | 37.500 | 8.28 | 0.81 | 37.47 | 3.91 |
2107 | 2195 | 2.345760 | GGGTGCAAGCTGTGATGGG | 61.346 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
2110 | 2198 | 1.531128 | TGCAAGCTGTGATGGGCAA | 60.531 | 52.632 | 0.00 | 0.00 | 0.00 | 4.52 |
2155 | 2243 | 1.459450 | GTCCGGGCAAAGATAGCAAA | 58.541 | 50.000 | 0.00 | 0.00 | 0.00 | 3.68 |
2158 | 2246 | 0.740737 | CGGGCAAAGATAGCAAAGGG | 59.259 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2195 | 2285 | 5.391310 | GCAGGATATGTGCCGAATAAATGAG | 60.391 | 44.000 | 0.00 | 0.00 | 34.67 | 2.90 |
2229 | 2319 | 9.679661 | TGCAGATATCAACTTTTATTAACTCCA | 57.320 | 29.630 | 5.32 | 0.00 | 0.00 | 3.86 |
2238 | 2328 | 6.899114 | ACTTTTATTAACTCCAAGACAAGCG | 58.101 | 36.000 | 0.00 | 0.00 | 0.00 | 4.68 |
2239 | 2329 | 6.485648 | ACTTTTATTAACTCCAAGACAAGCGT | 59.514 | 34.615 | 0.00 | 0.00 | 0.00 | 5.07 |
2258 | 2348 | 4.627467 | AGCGTTCAAGCAGTACATTTAGAG | 59.373 | 41.667 | 0.00 | 0.00 | 40.15 | 2.43 |
2326 | 2416 | 7.449704 | AGCCAGACTAAAGATTCAAGAAAATGT | 59.550 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
2347 | 2438 | 0.950116 | GCAGCTGGATATGAACTGCC | 59.050 | 55.000 | 17.12 | 0.00 | 46.21 | 4.85 |
2411 | 2502 | 6.183360 | GCTAACATCTTCAGCAGTGTTCTTAG | 60.183 | 42.308 | 0.00 | 0.00 | 36.34 | 2.18 |
2427 | 2519 | 7.448469 | AGTGTTCTTAGAAGTACATTGCCATTT | 59.552 | 33.333 | 5.22 | 0.00 | 38.34 | 2.32 |
2428 | 2520 | 7.538678 | GTGTTCTTAGAAGTACATTGCCATTTG | 59.461 | 37.037 | 5.22 | 0.00 | 38.34 | 2.32 |
2429 | 2521 | 6.194796 | TCTTAGAAGTACATTGCCATTTGC | 57.805 | 37.500 | 0.00 | 0.00 | 41.77 | 3.68 |
2473 | 2565 | 7.595819 | TTGGTTTGGTTTTCAGTTGATATCT | 57.404 | 32.000 | 3.98 | 0.00 | 0.00 | 1.98 |
2475 | 2567 | 6.775142 | TGGTTTGGTTTTCAGTTGATATCTGA | 59.225 | 34.615 | 3.98 | 0.00 | 39.71 | 3.27 |
2503 | 2595 | 0.384725 | CGCAGCGGTTTCAAGTGAAG | 60.385 | 55.000 | 7.00 | 0.00 | 35.21 | 3.02 |
2544 | 2636 | 7.733773 | TGAAGACAGTCCAGATCCTTATAAA | 57.266 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2601 | 2724 | 3.581024 | ATACATTGGTGCAAGCTTGTG | 57.419 | 42.857 | 26.55 | 17.77 | 34.31 | 3.33 |
2609 | 2795 | 1.855513 | TGCAAGCTTGTGAATGCAAC | 58.144 | 45.000 | 26.55 | 8.02 | 45.04 | 4.17 |
2617 | 2803 | 3.181497 | GCTTGTGAATGCAACCGATATGT | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
2624 | 2810 | 2.285083 | TGCAACCGATATGTTAGTGGC | 58.715 | 47.619 | 0.00 | 0.00 | 0.00 | 5.01 |
2644 | 2830 | 0.107214 | CCGGGCAAAGATAGCAAGGA | 60.107 | 55.000 | 0.00 | 0.00 | 33.68 | 3.36 |
2645 | 2831 | 1.477558 | CCGGGCAAAGATAGCAAGGAT | 60.478 | 52.381 | 0.00 | 0.00 | 33.68 | 3.24 |
2646 | 2832 | 2.224523 | CCGGGCAAAGATAGCAAGGATA | 60.225 | 50.000 | 0.00 | 0.00 | 33.68 | 2.59 |
2647 | 2833 | 3.560025 | CCGGGCAAAGATAGCAAGGATAT | 60.560 | 47.826 | 0.00 | 0.00 | 33.68 | 1.63 |
2648 | 2834 | 4.074970 | CGGGCAAAGATAGCAAGGATATT | 58.925 | 43.478 | 0.00 | 0.00 | 0.00 | 1.28 |
2649 | 2835 | 4.154918 | CGGGCAAAGATAGCAAGGATATTC | 59.845 | 45.833 | 0.00 | 0.00 | 0.00 | 1.75 |
2757 | 2943 | 8.107399 | AGATATGATTGGAGCATTTGTACATG | 57.893 | 34.615 | 0.00 | 0.00 | 0.00 | 3.21 |
2765 | 2951 | 4.497006 | GGAGCATTTGTACATGTGATCTGC | 60.497 | 45.833 | 19.28 | 10.85 | 0.00 | 4.26 |
2799 | 2985 | 4.600983 | AGAATATCTCCAGCCAGGCTAAAT | 59.399 | 41.667 | 15.64 | 7.89 | 36.40 | 1.40 |
2840 | 3026 | 0.035630 | AATCTGCACTGCACTCTCCC | 60.036 | 55.000 | 0.00 | 0.00 | 33.79 | 4.30 |
2861 | 3047 | 3.314080 | CCGTTTCTGACTTTGCCTGTAAA | 59.686 | 43.478 | 0.00 | 0.00 | 0.00 | 2.01 |
2864 | 3050 | 5.220777 | CGTTTCTGACTTTGCCTGTAAAAGA | 60.221 | 40.000 | 3.09 | 0.00 | 37.91 | 2.52 |
2865 | 3051 | 6.202226 | GTTTCTGACTTTGCCTGTAAAAGAG | 58.798 | 40.000 | 3.09 | 0.00 | 37.91 | 2.85 |
2868 | 3054 | 3.315191 | TGACTTTGCCTGTAAAAGAGTGC | 59.685 | 43.478 | 3.09 | 0.00 | 37.91 | 4.40 |
2885 | 3071 | 5.535333 | AGAGTGCTCATCAAATTTTGGTTG | 58.465 | 37.500 | 9.18 | 7.71 | 0.00 | 3.77 |
2903 | 3092 | 7.517614 | TTGGTTGTCATCTTTACAGCAATTA | 57.482 | 32.000 | 0.00 | 0.00 | 30.48 | 1.40 |
2915 | 3104 | 6.472686 | TTACAGCAATTACAAACCAAACCT | 57.527 | 33.333 | 0.00 | 0.00 | 0.00 | 3.50 |
2929 | 3118 | 9.679661 | ACAAACCAAACCTAAAATTCAGAAAAT | 57.320 | 25.926 | 0.00 | 0.00 | 0.00 | 1.82 |
2932 | 3121 | 8.153479 | ACCAAACCTAAAATTCAGAAAATTGC | 57.847 | 30.769 | 0.00 | 0.00 | 0.00 | 3.56 |
2933 | 3122 | 7.772757 | ACCAAACCTAAAATTCAGAAAATTGCA | 59.227 | 29.630 | 0.00 | 0.00 | 0.00 | 4.08 |
2934 | 3123 | 8.284693 | CCAAACCTAAAATTCAGAAAATTGCAG | 58.715 | 33.333 | 0.00 | 0.00 | 0.00 | 4.41 |
2935 | 3124 | 7.425577 | AACCTAAAATTCAGAAAATTGCAGC | 57.574 | 32.000 | 0.00 | 0.00 | 0.00 | 5.25 |
2967 | 3157 | 1.072159 | GCAGTCTCACTGGCCTGTT | 59.928 | 57.895 | 13.36 | 0.00 | 46.01 | 3.16 |
3028 | 3219 | 3.449737 | TGTTCTTATCAAGTACTCCCCCG | 59.550 | 47.826 | 0.00 | 0.00 | 30.99 | 5.73 |
3121 | 3321 | 2.897969 | TCACTCCACTCAGTTTAGTCCC | 59.102 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
3124 | 3324 | 4.082136 | CACTCCACTCAGTTTAGTCCCTAC | 60.082 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3125 | 3325 | 3.087031 | TCCACTCAGTTTAGTCCCTACG | 58.913 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3126 | 3326 | 2.824341 | CCACTCAGTTTAGTCCCTACGT | 59.176 | 50.000 | 0.00 | 0.00 | 0.00 | 3.57 |
3128 | 3328 | 4.643784 | CCACTCAGTTTAGTCCCTACGTAT | 59.356 | 45.833 | 0.00 | 0.00 | 0.00 | 3.06 |
3129 | 3329 | 5.126707 | CCACTCAGTTTAGTCCCTACGTATT | 59.873 | 44.000 | 0.00 | 0.00 | 0.00 | 1.89 |
3130 | 3330 | 6.264088 | CACTCAGTTTAGTCCCTACGTATTC | 58.736 | 44.000 | 0.00 | 0.00 | 0.00 | 1.75 |
3131 | 3331 | 6.095160 | CACTCAGTTTAGTCCCTACGTATTCT | 59.905 | 42.308 | 0.00 | 0.00 | 0.00 | 2.40 |
3132 | 3332 | 6.095160 | ACTCAGTTTAGTCCCTACGTATTCTG | 59.905 | 42.308 | 0.00 | 0.00 | 0.00 | 3.02 |
3133 | 3333 | 6.182627 | TCAGTTTAGTCCCTACGTATTCTGA | 58.817 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
3144 | 3364 | 2.165845 | ACGTATTCTGAAACCGAGGGAG | 59.834 | 50.000 | 15.83 | 0.00 | 0.00 | 4.30 |
3155 | 3375 | 1.559682 | ACCGAGGGAGTACATTGCAAT | 59.440 | 47.619 | 5.99 | 5.99 | 0.00 | 3.56 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 2.224606 | ACCAGACAATGACAACTGCAG | 58.775 | 47.619 | 13.48 | 13.48 | 0.00 | 4.41 |
2 | 3 | 1.537202 | GGACCAGACAATGACAACTGC | 59.463 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
4 | 5 | 2.039084 | GAGGGACCAGACAATGACAACT | 59.961 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
7 | 8 | 2.030027 | AGAGGGACCAGACAATGACA | 57.970 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
8 | 9 | 2.355209 | GGAAGAGGGACCAGACAATGAC | 60.355 | 54.545 | 0.00 | 0.00 | 0.00 | 3.06 |
9 | 10 | 1.909302 | GGAAGAGGGACCAGACAATGA | 59.091 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
10 | 11 | 1.630369 | TGGAAGAGGGACCAGACAATG | 59.370 | 52.381 | 0.00 | 0.00 | 0.00 | 2.82 |
11 | 12 | 2.044793 | TGGAAGAGGGACCAGACAAT | 57.955 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
12 | 13 | 1.630369 | CATGGAAGAGGGACCAGACAA | 59.370 | 52.381 | 0.00 | 0.00 | 39.62 | 3.18 |
13 | 14 | 1.279496 | CATGGAAGAGGGACCAGACA | 58.721 | 55.000 | 0.00 | 0.00 | 39.62 | 3.41 |
14 | 15 | 1.280457 | ACATGGAAGAGGGACCAGAC | 58.720 | 55.000 | 0.00 | 0.00 | 39.62 | 3.51 |
15 | 16 | 1.909302 | GAACATGGAAGAGGGACCAGA | 59.091 | 52.381 | 0.00 | 0.00 | 39.62 | 3.86 |
16 | 17 | 1.630369 | TGAACATGGAAGAGGGACCAG | 59.370 | 52.381 | 0.00 | 0.00 | 39.62 | 4.00 |
17 | 18 | 1.741028 | TGAACATGGAAGAGGGACCA | 58.259 | 50.000 | 0.00 | 0.00 | 40.57 | 4.02 |
18 | 19 | 3.372440 | AATGAACATGGAAGAGGGACC | 57.628 | 47.619 | 0.00 | 0.00 | 0.00 | 4.46 |
19 | 20 | 5.946377 | AGTTAAATGAACATGGAAGAGGGAC | 59.054 | 40.000 | 0.00 | 0.00 | 40.86 | 4.46 |
20 | 21 | 5.945784 | CAGTTAAATGAACATGGAAGAGGGA | 59.054 | 40.000 | 0.00 | 0.00 | 40.86 | 4.20 |
21 | 22 | 5.393461 | GCAGTTAAATGAACATGGAAGAGGG | 60.393 | 44.000 | 7.18 | 0.00 | 40.86 | 4.30 |
22 | 23 | 5.183713 | TGCAGTTAAATGAACATGGAAGAGG | 59.816 | 40.000 | 7.18 | 0.00 | 40.86 | 3.69 |
23 | 24 | 6.072286 | ACTGCAGTTAAATGAACATGGAAGAG | 60.072 | 38.462 | 15.25 | 0.00 | 40.86 | 2.85 |
24 | 25 | 5.769662 | ACTGCAGTTAAATGAACATGGAAGA | 59.230 | 36.000 | 15.25 | 0.00 | 40.86 | 2.87 |
25 | 26 | 6.017400 | ACTGCAGTTAAATGAACATGGAAG | 57.983 | 37.500 | 15.25 | 0.00 | 40.86 | 3.46 |
26 | 27 | 6.215121 | CAACTGCAGTTAAATGAACATGGAA | 58.785 | 36.000 | 30.67 | 0.00 | 40.86 | 3.53 |
27 | 28 | 5.771469 | CAACTGCAGTTAAATGAACATGGA | 58.229 | 37.500 | 30.67 | 0.00 | 40.86 | 3.41 |
28 | 29 | 4.386652 | GCAACTGCAGTTAAATGAACATGG | 59.613 | 41.667 | 30.67 | 15.06 | 40.86 | 3.66 |
29 | 30 | 4.386652 | GGCAACTGCAGTTAAATGAACATG | 59.613 | 41.667 | 30.67 | 16.50 | 44.36 | 3.21 |
30 | 31 | 4.039004 | TGGCAACTGCAGTTAAATGAACAT | 59.961 | 37.500 | 30.67 | 2.88 | 44.36 | 2.71 |
31 | 32 | 3.382865 | TGGCAACTGCAGTTAAATGAACA | 59.617 | 39.130 | 30.67 | 17.97 | 44.36 | 3.18 |
32 | 33 | 3.976169 | TGGCAACTGCAGTTAAATGAAC | 58.024 | 40.909 | 30.67 | 15.85 | 44.36 | 3.18 |
33 | 34 | 4.039004 | ACATGGCAACTGCAGTTAAATGAA | 59.961 | 37.500 | 33.22 | 19.65 | 44.36 | 2.57 |
34 | 35 | 3.573538 | ACATGGCAACTGCAGTTAAATGA | 59.426 | 39.130 | 33.22 | 19.61 | 44.36 | 2.57 |
35 | 36 | 3.916761 | ACATGGCAACTGCAGTTAAATG | 58.083 | 40.909 | 30.67 | 29.58 | 44.36 | 2.32 |
36 | 37 | 3.366273 | CGACATGGCAACTGCAGTTAAAT | 60.366 | 43.478 | 30.67 | 20.35 | 44.36 | 1.40 |
37 | 38 | 2.031245 | CGACATGGCAACTGCAGTTAAA | 60.031 | 45.455 | 30.67 | 19.09 | 44.36 | 1.52 |
38 | 39 | 1.535028 | CGACATGGCAACTGCAGTTAA | 59.465 | 47.619 | 30.67 | 19.43 | 44.36 | 2.01 |
39 | 40 | 1.155889 | CGACATGGCAACTGCAGTTA | 58.844 | 50.000 | 30.67 | 16.98 | 44.36 | 2.24 |
40 | 41 | 1.951510 | CGACATGGCAACTGCAGTT | 59.048 | 52.632 | 26.36 | 26.36 | 44.36 | 3.16 |
41 | 42 | 2.620112 | GCGACATGGCAACTGCAGT | 61.620 | 57.895 | 15.25 | 15.25 | 44.36 | 4.40 |
42 | 43 | 2.177531 | GCGACATGGCAACTGCAG | 59.822 | 61.111 | 13.48 | 13.48 | 44.36 | 4.41 |
43 | 44 | 2.281692 | AGCGACATGGCAACTGCA | 60.282 | 55.556 | 0.00 | 0.00 | 44.36 | 4.41 |
44 | 45 | 1.855213 | TTCAGCGACATGGCAACTGC | 61.855 | 55.000 | 12.73 | 0.88 | 41.14 | 4.40 |
45 | 46 | 0.110056 | GTTCAGCGACATGGCAACTG | 60.110 | 55.000 | 11.56 | 11.56 | 34.64 | 3.16 |
46 | 47 | 0.250467 | AGTTCAGCGACATGGCAACT | 60.250 | 50.000 | 0.00 | 0.00 | 34.64 | 3.16 |
47 | 48 | 1.128692 | GTAGTTCAGCGACATGGCAAC | 59.871 | 52.381 | 0.00 | 0.00 | 34.64 | 4.17 |
48 | 49 | 1.438651 | GTAGTTCAGCGACATGGCAA | 58.561 | 50.000 | 0.00 | 0.00 | 34.64 | 4.52 |
49 | 50 | 0.735978 | CGTAGTTCAGCGACATGGCA | 60.736 | 55.000 | 0.00 | 0.00 | 34.64 | 4.92 |
50 | 51 | 1.421410 | CCGTAGTTCAGCGACATGGC | 61.421 | 60.000 | 0.00 | 0.00 | 0.00 | 4.40 |
51 | 52 | 0.108804 | ACCGTAGTTCAGCGACATGG | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
52 | 53 | 1.390123 | CAACCGTAGTTCAGCGACATG | 59.610 | 52.381 | 0.00 | 0.00 | 32.45 | 3.21 |
53 | 54 | 1.710013 | CAACCGTAGTTCAGCGACAT | 58.290 | 50.000 | 0.00 | 0.00 | 32.45 | 3.06 |
54 | 55 | 0.942410 | GCAACCGTAGTTCAGCGACA | 60.942 | 55.000 | 0.00 | 0.00 | 32.45 | 4.35 |
55 | 56 | 1.623973 | GGCAACCGTAGTTCAGCGAC | 61.624 | 60.000 | 0.00 | 0.00 | 32.45 | 5.19 |
56 | 57 | 1.373748 | GGCAACCGTAGTTCAGCGA | 60.374 | 57.895 | 0.00 | 0.00 | 32.45 | 4.93 |
57 | 58 | 1.019278 | ATGGCAACCGTAGTTCAGCG | 61.019 | 55.000 | 0.00 | 0.00 | 32.45 | 5.18 |
58 | 59 | 0.447801 | CATGGCAACCGTAGTTCAGC | 59.552 | 55.000 | 0.00 | 0.00 | 32.45 | 4.26 |
59 | 60 | 1.732259 | GACATGGCAACCGTAGTTCAG | 59.268 | 52.381 | 0.00 | 0.00 | 32.45 | 3.02 |
60 | 61 | 1.803334 | GACATGGCAACCGTAGTTCA | 58.197 | 50.000 | 0.00 | 0.00 | 32.45 | 3.18 |
61 | 62 | 0.719465 | CGACATGGCAACCGTAGTTC | 59.281 | 55.000 | 0.00 | 0.00 | 32.45 | 3.01 |
62 | 63 | 0.672401 | CCGACATGGCAACCGTAGTT | 60.672 | 55.000 | 0.00 | 0.00 | 36.33 | 2.24 |
63 | 64 | 1.079405 | CCGACATGGCAACCGTAGT | 60.079 | 57.895 | 0.00 | 0.00 | 0.00 | 2.73 |
64 | 65 | 1.082117 | GTCCGACATGGCAACCGTAG | 61.082 | 60.000 | 0.00 | 0.00 | 37.80 | 3.51 |
65 | 66 | 1.079681 | GTCCGACATGGCAACCGTA | 60.080 | 57.895 | 0.00 | 0.00 | 37.80 | 4.02 |
66 | 67 | 2.358247 | GTCCGACATGGCAACCGT | 60.358 | 61.111 | 0.00 | 0.00 | 37.80 | 4.83 |
67 | 68 | 1.963855 | TTGTCCGACATGGCAACCG | 60.964 | 57.895 | 1.09 | 0.00 | 37.80 | 4.44 |
68 | 69 | 0.889186 | AGTTGTCCGACATGGCAACC | 60.889 | 55.000 | 1.09 | 0.00 | 46.81 | 3.77 |
69 | 70 | 1.463444 | GTAGTTGTCCGACATGGCAAC | 59.537 | 52.381 | 1.09 | 5.44 | 46.38 | 4.17 |
70 | 71 | 1.070914 | TGTAGTTGTCCGACATGGCAA | 59.929 | 47.619 | 1.09 | 0.00 | 37.80 | 4.52 |
71 | 72 | 0.682292 | TGTAGTTGTCCGACATGGCA | 59.318 | 50.000 | 1.09 | 0.00 | 37.80 | 4.92 |
72 | 73 | 1.337823 | ACTGTAGTTGTCCGACATGGC | 60.338 | 52.381 | 1.09 | 0.00 | 37.80 | 4.40 |
73 | 74 | 2.743636 | ACTGTAGTTGTCCGACATGG | 57.256 | 50.000 | 1.09 | 0.00 | 40.09 | 3.66 |
84 | 85 | 1.613437 | GCAACCATGGCAACTGTAGTT | 59.387 | 47.619 | 13.04 | 0.00 | 39.12 | 2.24 |
85 | 86 | 1.202927 | AGCAACCATGGCAACTGTAGT | 60.203 | 47.619 | 13.04 | 0.00 | 37.61 | 2.73 |
86 | 87 | 1.470098 | GAGCAACCATGGCAACTGTAG | 59.530 | 52.381 | 13.04 | 0.00 | 37.61 | 2.74 |
87 | 88 | 1.202867 | TGAGCAACCATGGCAACTGTA | 60.203 | 47.619 | 13.04 | 0.00 | 37.61 | 2.74 |
88 | 89 | 0.467844 | TGAGCAACCATGGCAACTGT | 60.468 | 50.000 | 13.04 | 0.00 | 37.61 | 3.55 |
89 | 90 | 0.675083 | TTGAGCAACCATGGCAACTG | 59.325 | 50.000 | 13.04 | 5.49 | 37.61 | 3.16 |
90 | 91 | 0.675633 | GTTGAGCAACCATGGCAACT | 59.324 | 50.000 | 19.25 | 11.63 | 36.73 | 3.16 |
91 | 92 | 0.675633 | AGTTGAGCAACCATGGCAAC | 59.324 | 50.000 | 19.02 | 19.02 | 42.06 | 4.17 |
92 | 93 | 0.675083 | CAGTTGAGCAACCATGGCAA | 59.325 | 50.000 | 13.04 | 4.49 | 42.06 | 4.52 |
93 | 94 | 1.808531 | GCAGTTGAGCAACCATGGCA | 61.809 | 55.000 | 13.04 | 0.00 | 42.06 | 4.92 |
94 | 95 | 1.080298 | GCAGTTGAGCAACCATGGC | 60.080 | 57.895 | 13.04 | 0.00 | 42.06 | 4.40 |
95 | 96 | 0.242825 | CTGCAGTTGAGCAACCATGG | 59.757 | 55.000 | 11.19 | 11.19 | 45.13 | 3.66 |
96 | 97 | 0.956633 | ACTGCAGTTGAGCAACCATG | 59.043 | 50.000 | 15.25 | 4.34 | 45.13 | 3.66 |
97 | 98 | 1.696063 | AACTGCAGTTGAGCAACCAT | 58.304 | 45.000 | 30.66 | 2.58 | 45.13 | 3.55 |
98 | 99 | 3.189568 | AACTGCAGTTGAGCAACCA | 57.810 | 47.368 | 30.66 | 1.68 | 45.13 | 3.67 |
107 | 108 | 5.049198 | CAGAACATACATGACAACTGCAGTT | 60.049 | 40.000 | 26.36 | 26.36 | 39.12 | 3.16 |
108 | 109 | 4.453478 | CAGAACATACATGACAACTGCAGT | 59.547 | 41.667 | 15.25 | 15.25 | 0.00 | 4.40 |
109 | 110 | 4.142752 | CCAGAACATACATGACAACTGCAG | 60.143 | 45.833 | 13.48 | 13.48 | 0.00 | 4.41 |
110 | 111 | 3.752747 | CCAGAACATACATGACAACTGCA | 59.247 | 43.478 | 0.00 | 0.00 | 0.00 | 4.41 |
111 | 112 | 3.753272 | ACCAGAACATACATGACAACTGC | 59.247 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
112 | 113 | 5.240891 | AGACCAGAACATACATGACAACTG | 58.759 | 41.667 | 0.00 | 1.40 | 0.00 | 3.16 |
113 | 114 | 5.489792 | AGACCAGAACATACATGACAACT | 57.510 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
114 | 115 | 6.311445 | CAGTAGACCAGAACATACATGACAAC | 59.689 | 42.308 | 0.00 | 0.00 | 0.00 | 3.32 |
115 | 116 | 6.398095 | CAGTAGACCAGAACATACATGACAA | 58.602 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
116 | 117 | 5.624509 | GCAGTAGACCAGAACATACATGACA | 60.625 | 44.000 | 0.00 | 0.00 | 0.00 | 3.58 |
117 | 118 | 4.806247 | GCAGTAGACCAGAACATACATGAC | 59.194 | 45.833 | 0.00 | 0.00 | 0.00 | 3.06 |
118 | 119 | 4.466015 | TGCAGTAGACCAGAACATACATGA | 59.534 | 41.667 | 0.00 | 0.00 | 0.00 | 3.07 |
119 | 120 | 4.758688 | TGCAGTAGACCAGAACATACATG | 58.241 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
120 | 121 | 4.467795 | ACTGCAGTAGACCAGAACATACAT | 59.532 | 41.667 | 20.16 | 0.00 | 33.40 | 2.29 |
121 | 122 | 3.832490 | ACTGCAGTAGACCAGAACATACA | 59.168 | 43.478 | 20.16 | 0.00 | 33.40 | 2.29 |
122 | 123 | 4.457834 | ACTGCAGTAGACCAGAACATAC | 57.542 | 45.455 | 20.16 | 0.00 | 33.40 | 2.39 |
123 | 124 | 4.820897 | CAACTGCAGTAGACCAGAACATA | 58.179 | 43.478 | 22.01 | 0.00 | 33.40 | 2.29 |
124 | 125 | 3.668447 | CAACTGCAGTAGACCAGAACAT | 58.332 | 45.455 | 22.01 | 0.00 | 33.40 | 2.71 |
125 | 126 | 2.806745 | GCAACTGCAGTAGACCAGAACA | 60.807 | 50.000 | 22.01 | 0.00 | 41.59 | 3.18 |
126 | 127 | 1.801178 | GCAACTGCAGTAGACCAGAAC | 59.199 | 52.381 | 22.01 | 0.00 | 41.59 | 3.01 |
127 | 128 | 1.270839 | GGCAACTGCAGTAGACCAGAA | 60.271 | 52.381 | 22.01 | 0.00 | 44.36 | 3.02 |
128 | 129 | 0.321671 | GGCAACTGCAGTAGACCAGA | 59.678 | 55.000 | 22.01 | 0.00 | 44.36 | 3.86 |
129 | 130 | 0.035317 | TGGCAACTGCAGTAGACCAG | 59.965 | 55.000 | 22.01 | 7.33 | 44.36 | 4.00 |
130 | 131 | 0.692476 | ATGGCAACTGCAGTAGACCA | 59.308 | 50.000 | 27.80 | 27.80 | 44.36 | 4.02 |
131 | 132 | 1.089920 | CATGGCAACTGCAGTAGACC | 58.910 | 55.000 | 22.01 | 21.02 | 44.36 | 3.85 |
132 | 133 | 2.099141 | TCATGGCAACTGCAGTAGAC | 57.901 | 50.000 | 22.01 | 13.35 | 44.36 | 2.59 |
133 | 134 | 3.354948 | AATCATGGCAACTGCAGTAGA | 57.645 | 42.857 | 22.01 | 11.57 | 44.36 | 2.59 |
134 | 135 | 3.441222 | TGAAATCATGGCAACTGCAGTAG | 59.559 | 43.478 | 22.01 | 6.41 | 44.36 | 2.57 |
135 | 136 | 3.419943 | TGAAATCATGGCAACTGCAGTA | 58.580 | 40.909 | 22.01 | 4.30 | 44.36 | 2.74 |
136 | 137 | 2.241160 | TGAAATCATGGCAACTGCAGT | 58.759 | 42.857 | 15.25 | 15.25 | 44.36 | 4.40 |
137 | 138 | 3.306917 | TTGAAATCATGGCAACTGCAG | 57.693 | 42.857 | 13.48 | 13.48 | 44.36 | 4.41 |
138 | 139 | 3.747854 | TTTGAAATCATGGCAACTGCA | 57.252 | 38.095 | 3.76 | 0.00 | 44.36 | 4.41 |
139 | 140 | 4.060205 | AGTTTTGAAATCATGGCAACTGC | 58.940 | 39.130 | 0.00 | 0.00 | 41.14 | 4.40 |
140 | 141 | 6.607735 | AAAGTTTTGAAATCATGGCAACTG | 57.392 | 33.333 | 0.00 | 0.00 | 37.61 | 3.16 |
141 | 142 | 6.930722 | CCTAAAGTTTTGAAATCATGGCAACT | 59.069 | 34.615 | 0.00 | 0.00 | 37.61 | 3.16 |
142 | 143 | 6.928492 | TCCTAAAGTTTTGAAATCATGGCAAC | 59.072 | 34.615 | 0.00 | 0.00 | 0.00 | 4.17 |
143 | 144 | 7.060383 | TCCTAAAGTTTTGAAATCATGGCAA | 57.940 | 32.000 | 0.00 | 0.00 | 0.00 | 4.52 |
144 | 145 | 6.267471 | ACTCCTAAAGTTTTGAAATCATGGCA | 59.733 | 34.615 | 0.00 | 0.00 | 33.03 | 4.92 |
145 | 146 | 6.691508 | ACTCCTAAAGTTTTGAAATCATGGC | 58.308 | 36.000 | 0.00 | 0.00 | 33.03 | 4.40 |
146 | 147 | 7.116805 | GCAACTCCTAAAGTTTTGAAATCATGG | 59.883 | 37.037 | 0.00 | 0.00 | 46.26 | 3.66 |
147 | 148 | 7.116805 | GGCAACTCCTAAAGTTTTGAAATCATG | 59.883 | 37.037 | 0.00 | 0.00 | 46.26 | 3.07 |
148 | 149 | 7.154656 | GGCAACTCCTAAAGTTTTGAAATCAT | 58.845 | 34.615 | 0.00 | 0.00 | 46.26 | 2.45 |
149 | 150 | 6.097554 | TGGCAACTCCTAAAGTTTTGAAATCA | 59.902 | 34.615 | 0.00 | 0.00 | 46.26 | 2.57 |
150 | 151 | 6.420903 | GTGGCAACTCCTAAAGTTTTGAAATC | 59.579 | 38.462 | 0.00 | 0.00 | 46.26 | 2.17 |
151 | 152 | 6.280643 | GTGGCAACTCCTAAAGTTTTGAAAT | 58.719 | 36.000 | 0.00 | 0.00 | 46.26 | 2.17 |
152 | 153 | 5.394773 | GGTGGCAACTCCTAAAGTTTTGAAA | 60.395 | 40.000 | 0.00 | 0.00 | 46.26 | 2.69 |
153 | 154 | 4.098807 | GGTGGCAACTCCTAAAGTTTTGAA | 59.901 | 41.667 | 0.00 | 0.00 | 46.26 | 2.69 |
154 | 155 | 3.634910 | GGTGGCAACTCCTAAAGTTTTGA | 59.365 | 43.478 | 0.00 | 0.00 | 46.26 | 2.69 |
155 | 156 | 3.977427 | GGTGGCAACTCCTAAAGTTTTG | 58.023 | 45.455 | 0.00 | 0.00 | 46.26 | 2.44 |
166 | 167 | 3.679824 | AGTGTTAGTAGGTGGCAACTC | 57.320 | 47.619 | 9.14 | 0.35 | 37.61 | 3.01 |
167 | 168 | 3.514309 | CCTAGTGTTAGTAGGTGGCAACT | 59.486 | 47.826 | 11.18 | 11.18 | 36.69 | 3.16 |
168 | 169 | 3.858247 | CCTAGTGTTAGTAGGTGGCAAC | 58.142 | 50.000 | 0.00 | 0.00 | 36.69 | 4.17 |
169 | 170 | 2.235402 | GCCTAGTGTTAGTAGGTGGCAA | 59.765 | 50.000 | 10.53 | 0.00 | 42.16 | 4.52 |
170 | 171 | 1.829222 | GCCTAGTGTTAGTAGGTGGCA | 59.171 | 52.381 | 10.53 | 0.00 | 42.16 | 4.92 |
171 | 172 | 1.829222 | TGCCTAGTGTTAGTAGGTGGC | 59.171 | 52.381 | 10.53 | 0.00 | 42.16 | 5.01 |
172 | 173 | 3.097614 | ACTGCCTAGTGTTAGTAGGTGG | 58.902 | 50.000 | 10.53 | 6.92 | 42.16 | 4.61 |
173 | 174 | 4.495422 | CAACTGCCTAGTGTTAGTAGGTG | 58.505 | 47.826 | 10.53 | 7.20 | 42.16 | 4.00 |
174 | 175 | 3.056035 | GCAACTGCCTAGTGTTAGTAGGT | 60.056 | 47.826 | 10.53 | 0.00 | 42.16 | 3.08 |
175 | 176 | 3.522553 | GCAACTGCCTAGTGTTAGTAGG | 58.477 | 50.000 | 5.53 | 5.53 | 42.87 | 3.18 |
189 | 190 | 3.466836 | TGTAGTGCTATATGGCAACTGC | 58.533 | 45.455 | 16.02 | 16.95 | 44.18 | 4.40 |
190 | 191 | 6.435430 | TTTTGTAGTGCTATATGGCAACTG | 57.565 | 37.500 | 16.02 | 0.00 | 44.18 | 3.16 |
226 | 227 | 6.544564 | TCTCTCTTTTACCCGAACATGTTTTT | 59.455 | 34.615 | 13.36 | 0.24 | 0.00 | 1.94 |
227 | 228 | 6.059484 | TCTCTCTTTTACCCGAACATGTTTT | 58.941 | 36.000 | 13.36 | 0.60 | 0.00 | 2.43 |
228 | 229 | 5.617252 | TCTCTCTTTTACCCGAACATGTTT | 58.383 | 37.500 | 13.36 | 0.00 | 0.00 | 2.83 |
229 | 230 | 5.221661 | ACTCTCTCTTTTACCCGAACATGTT | 60.222 | 40.000 | 11.78 | 11.78 | 0.00 | 2.71 |
230 | 231 | 4.283722 | ACTCTCTCTTTTACCCGAACATGT | 59.716 | 41.667 | 0.00 | 0.00 | 0.00 | 3.21 |
231 | 232 | 4.822026 | ACTCTCTCTTTTACCCGAACATG | 58.178 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
232 | 233 | 5.238583 | CAACTCTCTCTTTTACCCGAACAT | 58.761 | 41.667 | 0.00 | 0.00 | 0.00 | 2.71 |
233 | 234 | 4.628074 | CAACTCTCTCTTTTACCCGAACA | 58.372 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
234 | 235 | 3.432592 | GCAACTCTCTCTTTTACCCGAAC | 59.567 | 47.826 | 0.00 | 0.00 | 0.00 | 3.95 |
235 | 236 | 3.660865 | GCAACTCTCTCTTTTACCCGAA | 58.339 | 45.455 | 0.00 | 0.00 | 0.00 | 4.30 |
236 | 237 | 2.352421 | CGCAACTCTCTCTTTTACCCGA | 60.352 | 50.000 | 0.00 | 0.00 | 0.00 | 5.14 |
237 | 238 | 1.993370 | CGCAACTCTCTCTTTTACCCG | 59.007 | 52.381 | 0.00 | 0.00 | 0.00 | 5.28 |
238 | 239 | 3.314541 | TCGCAACTCTCTCTTTTACCC | 57.685 | 47.619 | 0.00 | 0.00 | 0.00 | 3.69 |
239 | 240 | 4.092091 | CACATCGCAACTCTCTCTTTTACC | 59.908 | 45.833 | 0.00 | 0.00 | 0.00 | 2.85 |
240 | 241 | 4.434857 | GCACATCGCAACTCTCTCTTTTAC | 60.435 | 45.833 | 0.00 | 0.00 | 41.79 | 2.01 |
241 | 242 | 3.679980 | GCACATCGCAACTCTCTCTTTTA | 59.320 | 43.478 | 0.00 | 0.00 | 41.79 | 1.52 |
242 | 243 | 2.481952 | GCACATCGCAACTCTCTCTTTT | 59.518 | 45.455 | 0.00 | 0.00 | 41.79 | 2.27 |
243 | 244 | 2.072298 | GCACATCGCAACTCTCTCTTT | 58.928 | 47.619 | 0.00 | 0.00 | 41.79 | 2.52 |
244 | 245 | 1.274728 | AGCACATCGCAACTCTCTCTT | 59.725 | 47.619 | 0.00 | 0.00 | 46.13 | 2.85 |
245 | 246 | 0.894141 | AGCACATCGCAACTCTCTCT | 59.106 | 50.000 | 0.00 | 0.00 | 46.13 | 3.10 |
246 | 247 | 1.276415 | GAGCACATCGCAACTCTCTC | 58.724 | 55.000 | 0.00 | 0.00 | 46.13 | 3.20 |
247 | 248 | 0.605083 | TGAGCACATCGCAACTCTCT | 59.395 | 50.000 | 0.00 | 0.00 | 46.13 | 3.10 |
248 | 249 | 0.718343 | GTGAGCACATCGCAACTCTC | 59.282 | 55.000 | 0.00 | 0.00 | 46.13 | 3.20 |
249 | 250 | 0.033920 | TGTGAGCACATCGCAACTCT | 59.966 | 50.000 | 0.00 | 0.00 | 45.33 | 3.24 |
250 | 251 | 2.532186 | TGTGAGCACATCGCAACTC | 58.468 | 52.632 | 0.00 | 0.00 | 45.33 | 3.01 |
251 | 252 | 4.777384 | TGTGAGCACATCGCAACT | 57.223 | 50.000 | 0.00 | 0.00 | 45.33 | 3.16 |
263 | 264 | 2.103042 | GCCCTAGCGTGCTTGTGAG | 61.103 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
264 | 265 | 2.047274 | GCCCTAGCGTGCTTGTGA | 60.047 | 61.111 | 0.00 | 0.00 | 0.00 | 3.58 |
265 | 266 | 2.358615 | TGCCCTAGCGTGCTTGTG | 60.359 | 61.111 | 0.00 | 0.00 | 44.31 | 3.33 |
266 | 267 | 2.046892 | CTGCCCTAGCGTGCTTGT | 60.047 | 61.111 | 0.00 | 0.00 | 44.31 | 3.16 |
267 | 268 | 1.672356 | AACTGCCCTAGCGTGCTTG | 60.672 | 57.895 | 0.00 | 0.00 | 44.31 | 4.01 |
268 | 269 | 1.672356 | CAACTGCCCTAGCGTGCTT | 60.672 | 57.895 | 0.00 | 0.00 | 44.31 | 3.91 |
269 | 270 | 2.046892 | CAACTGCCCTAGCGTGCT | 60.047 | 61.111 | 0.00 | 0.00 | 44.31 | 4.40 |
270 | 271 | 2.852495 | TAGCAACTGCCCTAGCGTGC | 62.852 | 60.000 | 0.00 | 0.00 | 44.31 | 5.34 |
271 | 272 | 0.179073 | ATAGCAACTGCCCTAGCGTG | 60.179 | 55.000 | 0.00 | 0.00 | 44.31 | 5.34 |
272 | 273 | 0.179073 | CATAGCAACTGCCCTAGCGT | 60.179 | 55.000 | 0.00 | 0.00 | 44.31 | 5.07 |
273 | 274 | 0.179073 | ACATAGCAACTGCCCTAGCG | 60.179 | 55.000 | 0.00 | 0.00 | 44.31 | 4.26 |
274 | 275 | 2.910688 | TACATAGCAACTGCCCTAGC | 57.089 | 50.000 | 0.00 | 0.00 | 43.38 | 3.42 |
296 | 297 | 5.833131 | TCTCCTTTACATGGCAACTCTTTTT | 59.167 | 36.000 | 0.00 | 0.00 | 37.61 | 1.94 |
297 | 298 | 5.385198 | TCTCCTTTACATGGCAACTCTTTT | 58.615 | 37.500 | 0.00 | 0.00 | 37.61 | 2.27 |
298 | 299 | 4.985538 | TCTCCTTTACATGGCAACTCTTT | 58.014 | 39.130 | 0.00 | 0.00 | 37.61 | 2.52 |
299 | 300 | 4.640771 | TCTCCTTTACATGGCAACTCTT | 57.359 | 40.909 | 0.00 | 0.00 | 37.61 | 2.85 |
300 | 301 | 4.640771 | TTCTCCTTTACATGGCAACTCT | 57.359 | 40.909 | 0.00 | 0.00 | 37.61 | 3.24 |
301 | 302 | 4.379918 | GCTTTCTCCTTTACATGGCAACTC | 60.380 | 45.833 | 0.00 | 0.00 | 37.61 | 3.01 |
311 | 312 | 5.239525 | AGTTGACATGTGCTTTCTCCTTTAC | 59.760 | 40.000 | 1.15 | 0.00 | 0.00 | 2.01 |
314 | 315 | 3.817647 | GAGTTGACATGTGCTTTCTCCTT | 59.182 | 43.478 | 1.15 | 0.00 | 0.00 | 3.36 |
315 | 316 | 3.406764 | GAGTTGACATGTGCTTTCTCCT | 58.593 | 45.455 | 1.15 | 0.00 | 0.00 | 3.69 |
316 | 317 | 2.158449 | CGAGTTGACATGTGCTTTCTCC | 59.842 | 50.000 | 1.15 | 0.00 | 0.00 | 3.71 |
317 | 318 | 2.158449 | CCGAGTTGACATGTGCTTTCTC | 59.842 | 50.000 | 1.15 | 3.29 | 0.00 | 2.87 |
318 | 319 | 2.146342 | CCGAGTTGACATGTGCTTTCT | 58.854 | 47.619 | 1.15 | 0.00 | 0.00 | 2.52 |
319 | 320 | 1.197721 | CCCGAGTTGACATGTGCTTTC | 59.802 | 52.381 | 1.15 | 0.00 | 0.00 | 2.62 |
323 | 325 | 1.463444 | GTTACCCGAGTTGACATGTGC | 59.537 | 52.381 | 1.15 | 0.00 | 0.00 | 4.57 |
326 | 328 | 3.056821 | TCTCTGTTACCCGAGTTGACATG | 60.057 | 47.826 | 0.00 | 0.00 | 0.00 | 3.21 |
330 | 332 | 2.872732 | ACTCTCTGTTACCCGAGTTGA | 58.127 | 47.619 | 0.00 | 0.00 | 33.21 | 3.18 |
394 | 397 | 1.680735 | AGTTGCCATGCGTTTCTTCAA | 59.319 | 42.857 | 0.00 | 0.00 | 0.00 | 2.69 |
397 | 401 | 2.621055 | TGTTAGTTGCCATGCGTTTCTT | 59.379 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
415 | 419 | 2.133641 | GCCCACACCCAAAGCTGTT | 61.134 | 57.895 | 0.00 | 0.00 | 0.00 | 3.16 |
420 | 424 | 0.536460 | ACGTAAGCCCACACCCAAAG | 60.536 | 55.000 | 0.00 | 0.00 | 45.62 | 2.77 |
456 | 460 | 2.438021 | TCCATGGTAGATGGTAACTGCC | 59.562 | 50.000 | 12.58 | 0.00 | 40.06 | 4.85 |
463 | 467 | 5.772393 | TGTACTTTTCCATGGTAGATGGT | 57.228 | 39.130 | 12.58 | 7.26 | 40.06 | 3.55 |
476 | 480 | 2.161609 | CCCGAGTTGCCATGTACTTTTC | 59.838 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
481 | 485 | 2.004733 | GTTACCCGAGTTGCCATGTAC | 58.995 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
482 | 486 | 1.624312 | TGTTACCCGAGTTGCCATGTA | 59.376 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
511 | 515 | 5.473504 | CCTAGGTTTGTTTGTAAGCAGATGT | 59.526 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
525 | 529 | 3.036431 | GCAACTGCCCTAGGTTTGT | 57.964 | 52.632 | 8.29 | 0.00 | 34.31 | 2.83 |
577 | 581 | 1.606313 | CCTCGCCCACACCCAAAAT | 60.606 | 57.895 | 0.00 | 0.00 | 0.00 | 1.82 |
578 | 582 | 2.203422 | CCTCGCCCACACCCAAAA | 60.203 | 61.111 | 0.00 | 0.00 | 0.00 | 2.44 |
611 | 635 | 0.323302 | TGTGGGCGCTTATCACTTCA | 59.677 | 50.000 | 7.64 | 0.00 | 33.04 | 3.02 |
637 | 663 | 1.532437 | CAGTTTTCACGCATGCAGAGA | 59.468 | 47.619 | 19.57 | 11.54 | 0.00 | 3.10 |
644 | 670 | 1.065401 | CACACACCAGTTTTCACGCAT | 59.935 | 47.619 | 0.00 | 0.00 | 0.00 | 4.73 |
670 | 696 | 1.336755 | GGTGTGTGGGTGTTTAGCAAG | 59.663 | 52.381 | 0.00 | 0.00 | 0.00 | 4.01 |
680 | 706 | 1.692749 | ACAGGACTGGTGTGTGGGT | 60.693 | 57.895 | 4.14 | 0.00 | 34.19 | 4.51 |
712 | 738 | 2.029073 | CAGTCGCCCACACGTCTT | 59.971 | 61.111 | 0.00 | 0.00 | 28.98 | 3.01 |
713 | 739 | 3.991051 | CCAGTCGCCCACACGTCT | 61.991 | 66.667 | 0.00 | 0.00 | 31.63 | 4.18 |
732 | 758 | 1.705337 | GGATCGTGTGTGGGCATTCG | 61.705 | 60.000 | 0.00 | 0.00 | 0.00 | 3.34 |
749 | 775 | 2.812836 | TATGACACGTAGGACTGGGA | 57.187 | 50.000 | 0.00 | 0.00 | 0.00 | 4.37 |
786 | 812 | 1.699656 | CTTCTGCACGAATCCTGGCG | 61.700 | 60.000 | 0.00 | 0.00 | 0.00 | 5.69 |
814 | 840 | 2.008543 | GCTCACACGCATGGATTCTCA | 61.009 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
818 | 844 | 1.079197 | TCGCTCACACGCATGGATT | 60.079 | 52.632 | 0.00 | 0.00 | 0.00 | 3.01 |
855 | 881 | 2.679336 | ACGGAAATATTAACGCCCACAC | 59.321 | 45.455 | 10.53 | 0.00 | 0.00 | 3.82 |
884 | 910 | 6.071051 | GGGAACTTTTATTCCTTGGTGCAATA | 60.071 | 38.462 | 4.63 | 0.00 | 46.46 | 1.90 |
923 | 951 | 5.689383 | TGTCACTTTTCTGCCATTTCTAC | 57.311 | 39.130 | 0.00 | 0.00 | 0.00 | 2.59 |
973 | 1001 | 3.755628 | GTGCTGCGGTCCGTCCTA | 61.756 | 66.667 | 13.94 | 0.00 | 0.00 | 2.94 |
1028 | 1060 | 3.706373 | GCAGGGGTCAAGGCGAGA | 61.706 | 66.667 | 0.00 | 0.00 | 0.00 | 4.04 |
1066 | 1103 | 2.720144 | AAAAGCTGGGGTCCTGGCTG | 62.720 | 60.000 | 0.00 | 0.00 | 34.80 | 4.85 |
1067 | 1104 | 2.432174 | GAAAAGCTGGGGTCCTGGCT | 62.432 | 60.000 | 0.00 | 0.00 | 35.66 | 4.75 |
1072 | 1109 | 0.034960 | GAGGAGAAAAGCTGGGGTCC | 60.035 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
1075 | 1112 | 0.254462 | GAGGAGGAGAAAAGCTGGGG | 59.746 | 60.000 | 0.00 | 0.00 | 0.00 | 4.96 |
1711 | 1771 | 5.760253 | CACACACACTGAAATTCCTAGAACT | 59.240 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1727 | 1787 | 2.277247 | GCACGCACACACACACAC | 60.277 | 61.111 | 0.00 | 0.00 | 0.00 | 3.82 |
1728 | 1788 | 3.858989 | CGCACGCACACACACACA | 61.859 | 61.111 | 0.00 | 0.00 | 0.00 | 3.72 |
1766 | 1826 | 2.277084 | CAAACGCATACTACCACCTCC | 58.723 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
1768 | 1828 | 2.695359 | CACAAACGCATACTACCACCT | 58.305 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
1769 | 1829 | 1.129811 | GCACAAACGCATACTACCACC | 59.870 | 52.381 | 0.00 | 0.00 | 0.00 | 4.61 |
1772 | 1833 | 2.864343 | CCTAGCACAAACGCATACTACC | 59.136 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1781 | 1842 | 3.119849 | CCTCAAAATCCCTAGCACAAACG | 60.120 | 47.826 | 0.00 | 0.00 | 0.00 | 3.60 |
1808 | 1870 | 7.056635 | CCTCAGGATTTCATATGGTTAACACT | 58.943 | 38.462 | 8.10 | 0.00 | 0.00 | 3.55 |
1895 | 1962 | 5.928839 | TGAACTGAAACATGTAGAGAGAAGC | 59.071 | 40.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1905 | 1972 | 7.714377 | GGATCTCTGATATGAACTGAAACATGT | 59.286 | 37.037 | 0.00 | 0.00 | 0.00 | 3.21 |
1906 | 1973 | 7.932491 | AGGATCTCTGATATGAACTGAAACATG | 59.068 | 37.037 | 0.00 | 0.00 | 0.00 | 3.21 |
1985 | 2054 | 7.964604 | ACTGAACTACCTTCTGTAAAATGAC | 57.035 | 36.000 | 0.00 | 0.00 | 38.81 | 3.06 |
2067 | 2136 | 1.967762 | AAACGCGATGCAATTCAGTG | 58.032 | 45.000 | 15.93 | 0.00 | 0.00 | 3.66 |
2079 | 2148 | 2.279985 | TTGCACCCGTAAACGCGA | 60.280 | 55.556 | 15.93 | 0.00 | 38.18 | 5.87 |
2080 | 2149 | 2.172419 | CTTGCACCCGTAAACGCG | 59.828 | 61.111 | 3.53 | 3.53 | 38.18 | 6.01 |
2107 | 2195 | 2.180017 | CATCGCTTGCCCAGTTGC | 59.820 | 61.111 | 0.00 | 0.00 | 0.00 | 4.17 |
2155 | 2243 | 0.825010 | CTGCTTGAAACCAGCACCCT | 60.825 | 55.000 | 0.00 | 0.00 | 34.61 | 4.34 |
2158 | 2246 | 1.251251 | ATCCTGCTTGAAACCAGCAC | 58.749 | 50.000 | 0.00 | 0.00 | 34.61 | 4.40 |
2180 | 2270 | 5.406780 | CAGTATCCTCTCATTTATTCGGCAC | 59.593 | 44.000 | 0.00 | 0.00 | 0.00 | 5.01 |
2195 | 2285 | 9.717942 | ATAAAAGTTGATATCTGCAGTATCCTC | 57.282 | 33.333 | 22.56 | 17.60 | 0.00 | 3.71 |
2226 | 2316 | 0.944386 | GCTTGAACGCTTGTCTTGGA | 59.056 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2229 | 2319 | 1.668419 | ACTGCTTGAACGCTTGTCTT | 58.332 | 45.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2238 | 2328 | 5.862924 | TGCTCTAAATGTACTGCTTGAAC | 57.137 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
2239 | 2329 | 7.307694 | CAAATGCTCTAAATGTACTGCTTGAA | 58.692 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
2258 | 2348 | 1.469251 | CCAGATCAGCTGTGCAAATGC | 60.469 | 52.381 | 14.67 | 0.00 | 43.33 | 3.56 |
2284 | 2374 | 3.326006 | TCTGGCTGAAGATGTTCTCACTT | 59.674 | 43.478 | 4.03 | 0.00 | 33.38 | 3.16 |
2347 | 2438 | 0.249447 | TGTGACAAGCCAGTGAGACG | 60.249 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
2427 | 2519 | 0.397941 | CCTCACTCAGTTTCCCTGCA | 59.602 | 55.000 | 0.00 | 0.00 | 41.25 | 4.41 |
2428 | 2520 | 0.398318 | ACCTCACTCAGTTTCCCTGC | 59.602 | 55.000 | 0.00 | 0.00 | 41.25 | 4.85 |
2429 | 2521 | 2.938956 | AACCTCACTCAGTTTCCCTG | 57.061 | 50.000 | 0.00 | 0.00 | 42.97 | 4.45 |
2443 | 2535 | 4.827692 | ACTGAAAACCAAACCAAAACCTC | 58.172 | 39.130 | 0.00 | 0.00 | 0.00 | 3.85 |
2447 | 2539 | 8.482128 | AGATATCAACTGAAAACCAAACCAAAA | 58.518 | 29.630 | 5.32 | 0.00 | 0.00 | 2.44 |
2473 | 2565 | 2.733218 | CGCTGCGTTCCGAACTCA | 60.733 | 61.111 | 14.93 | 6.73 | 0.00 | 3.41 |
2475 | 2567 | 3.802418 | AACCGCTGCGTTCCGAACT | 62.802 | 57.895 | 21.59 | 0.00 | 0.00 | 3.01 |
2503 | 2595 | 4.909880 | GTCTTCAGTAAAATGTCCGCAAAC | 59.090 | 41.667 | 0.00 | 0.00 | 0.00 | 2.93 |
2544 | 2636 | 1.445582 | GCGGAAACTCGGTGTCGAT | 60.446 | 57.895 | 0.00 | 0.00 | 45.04 | 3.59 |
2569 | 2661 | 6.157904 | TGCACCAATGTATAATGCATAATGC | 58.842 | 36.000 | 0.00 | 0.00 | 41.18 | 3.56 |
2581 | 2673 | 3.156293 | TCACAAGCTTGCACCAATGTAT | 58.844 | 40.909 | 26.27 | 0.00 | 0.00 | 2.29 |
2582 | 2674 | 2.580962 | TCACAAGCTTGCACCAATGTA | 58.419 | 42.857 | 26.27 | 3.92 | 0.00 | 2.29 |
2601 | 2724 | 4.554723 | GCCACTAACATATCGGTTGCATTC | 60.555 | 45.833 | 0.00 | 0.00 | 32.29 | 2.67 |
2609 | 2795 | 0.320421 | CCGGGCCACTAACATATCGG | 60.320 | 60.000 | 4.39 | 0.00 | 0.00 | 4.18 |
2617 | 2803 | 1.858739 | ATCTTTGCCCGGGCCACTAA | 61.859 | 55.000 | 41.75 | 26.81 | 41.09 | 2.24 |
2624 | 2810 | 1.103398 | CCTTGCTATCTTTGCCCGGG | 61.103 | 60.000 | 19.09 | 19.09 | 0.00 | 5.73 |
2765 | 2951 | 8.370940 | TGGCTGGAGATATTCTTATTCTTACAG | 58.629 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
2799 | 2985 | 5.164620 | TCAGGATGCAGTGTTTCAGAATA | 57.835 | 39.130 | 0.00 | 0.00 | 34.76 | 1.75 |
2840 | 3026 | 4.545823 | TTTACAGGCAAAGTCAGAAACG | 57.454 | 40.909 | 0.00 | 0.00 | 0.00 | 3.60 |
2861 | 3047 | 5.796424 | ACCAAAATTTGATGAGCACTCTT | 57.204 | 34.783 | 7.37 | 0.00 | 0.00 | 2.85 |
2864 | 3050 | 5.163426 | TGACAACCAAAATTTGATGAGCACT | 60.163 | 36.000 | 7.37 | 0.00 | 0.00 | 4.40 |
2865 | 3051 | 5.049167 | TGACAACCAAAATTTGATGAGCAC | 58.951 | 37.500 | 7.37 | 2.93 | 0.00 | 4.40 |
2868 | 3054 | 8.597662 | AAAGATGACAACCAAAATTTGATGAG | 57.402 | 30.769 | 7.37 | 0.00 | 0.00 | 2.90 |
2885 | 3071 | 7.367285 | TGGTTTGTAATTGCTGTAAAGATGAC | 58.633 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
2903 | 3092 | 9.679661 | ATTTTCTGAATTTTAGGTTTGGTTTGT | 57.320 | 25.926 | 0.00 | 0.00 | 0.00 | 2.83 |
2915 | 3104 | 6.757237 | TCAGGCTGCAATTTTCTGAATTTTA | 58.243 | 32.000 | 10.34 | 0.00 | 32.36 | 1.52 |
2929 | 3118 | 2.291465 | GCGATTCATATTCAGGCTGCAA | 59.709 | 45.455 | 10.34 | 5.74 | 0.00 | 4.08 |
2931 | 3120 | 1.875514 | TGCGATTCATATTCAGGCTGC | 59.124 | 47.619 | 10.34 | 0.00 | 0.00 | 5.25 |
2932 | 3121 | 3.136763 | ACTGCGATTCATATTCAGGCTG | 58.863 | 45.455 | 8.58 | 8.58 | 0.00 | 4.85 |
2933 | 3122 | 3.070734 | AGACTGCGATTCATATTCAGGCT | 59.929 | 43.478 | 0.00 | 0.00 | 38.24 | 4.58 |
2934 | 3123 | 3.397482 | AGACTGCGATTCATATTCAGGC | 58.603 | 45.455 | 0.00 | 0.00 | 33.14 | 4.85 |
2935 | 3124 | 4.447054 | GTGAGACTGCGATTCATATTCAGG | 59.553 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
2967 | 3157 | 2.593346 | AATTTTGCGAACAACCTGCA | 57.407 | 40.000 | 0.00 | 0.00 | 34.87 | 4.41 |
3121 | 3321 | 3.379372 | TCCCTCGGTTTCAGAATACGTAG | 59.621 | 47.826 | 0.08 | 0.00 | 0.00 | 3.51 |
3124 | 3324 | 2.165845 | ACTCCCTCGGTTTCAGAATACG | 59.834 | 50.000 | 1.60 | 1.60 | 0.00 | 3.06 |
3125 | 3325 | 3.889520 | ACTCCCTCGGTTTCAGAATAC | 57.110 | 47.619 | 0.00 | 0.00 | 0.00 | 1.89 |
3126 | 3326 | 4.346730 | TGTACTCCCTCGGTTTCAGAATA | 58.653 | 43.478 | 0.00 | 0.00 | 0.00 | 1.75 |
3128 | 3328 | 2.600790 | TGTACTCCCTCGGTTTCAGAA | 58.399 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
3129 | 3329 | 2.297698 | TGTACTCCCTCGGTTTCAGA | 57.702 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
3130 | 3330 | 3.262420 | CAATGTACTCCCTCGGTTTCAG | 58.738 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3131 | 3331 | 2.614481 | GCAATGTACTCCCTCGGTTTCA | 60.614 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3132 | 3332 | 2.007608 | GCAATGTACTCCCTCGGTTTC | 58.992 | 52.381 | 0.00 | 0.00 | 0.00 | 2.78 |
3133 | 3333 | 1.349688 | TGCAATGTACTCCCTCGGTTT | 59.650 | 47.619 | 0.00 | 0.00 | 0.00 | 3.27 |
3167 | 3387 | 3.578282 | CCAAACCAAGCCCTAACTCATTT | 59.422 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
3169 | 3389 | 2.110011 | ACCAAACCAAGCCCTAACTCAT | 59.890 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
3170 | 3390 | 1.497286 | ACCAAACCAAGCCCTAACTCA | 59.503 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
3171 | 3391 | 2.287977 | ACCAAACCAAGCCCTAACTC | 57.712 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3182 | 3402 | 6.339587 | GGATATCAACTGAAAACCAAACCA | 57.660 | 37.500 | 4.83 | 0.00 | 0.00 | 3.67 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.