Multiple sequence alignment - TraesCS6B01G169500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G169500 chr6B 100.000 3206 0 0 1 3206 181470929 181474134 0.000000e+00 5921.0
1 TraesCS6B01G169500 chr6B 94.175 309 17 1 4 311 476190853 476191161 1.350000e-128 470.0
2 TraesCS6B01G169500 chr6D 91.304 1748 96 33 871 2581 97262749 97264477 0.000000e+00 2335.0
3 TraesCS6B01G169500 chr6D 85.736 645 57 21 2575 3206 97264562 97265184 0.000000e+00 649.0
4 TraesCS6B01G169500 chr6D 93.891 311 19 0 1 311 460656057 460656367 1.350000e-128 470.0
5 TraesCS6B01G169500 chr6A 90.164 1769 92 39 871 2581 116336148 116337892 0.000000e+00 2228.0
6 TraesCS6B01G169500 chr6A 91.993 537 29 7 2575 3106 116337982 116338509 0.000000e+00 741.0
7 TraesCS6B01G169500 chr6A 94.286 35 1 1 871 904 116089196 116089230 6.000000e-03 52.8
8 TraesCS6B01G169500 chr1B 89.228 557 51 3 321 875 94574703 94575252 0.000000e+00 688.0
9 TraesCS6B01G169500 chr1B 87.500 448 45 4 303 746 44371618 44372058 1.030000e-139 507.0
10 TraesCS6B01G169500 chr1B 95.146 309 15 0 3 311 133266533 133266225 3.720000e-134 488.0
11 TraesCS6B01G169500 chr1B 95.724 304 12 1 4 306 623720296 623719993 3.720000e-134 488.0
12 TraesCS6B01G169500 chr1B 94.855 311 12 4 3 311 94562357 94562665 1.730000e-132 483.0
13 TraesCS6B01G169500 chr1B 88.764 89 9 1 3018 3106 390622291 390622378 1.220000e-19 108.0
14 TraesCS6B01G169500 chr1B 86.869 99 10 3 336 433 549990461 549990365 1.220000e-19 108.0
15 TraesCS6B01G169500 chr3B 94.751 362 15 1 1158 1515 739023592 739023231 7.770000e-156 560.0
16 TraesCS6B01G169500 chr3B 94.839 310 15 1 3 311 284636042 284635733 1.730000e-132 483.0
17 TraesCS6B01G169500 chr3B 94.175 309 18 0 3 311 31188029 31188337 3.740000e-129 472.0
18 TraesCS6B01G169500 chr3B 83.499 503 64 12 433 931 139197336 139197823 4.880000e-123 451.0
19 TraesCS6B01G169500 chr3B 86.466 133 17 1 303 434 715121077 715120945 9.270000e-31 145.0
20 TraesCS6B01G169500 chr5B 89.095 431 40 5 457 882 369250841 369250413 2.190000e-146 529.0
21 TraesCS6B01G169500 chr5B 88.471 425 44 4 457 878 458688585 458688163 2.850000e-140 508.0
22 TraesCS6B01G169500 chr5B 94.498 309 17 0 3 311 566104248 566104556 8.050000e-131 477.0
23 TraesCS6B01G169500 chr5B 87.121 132 15 2 303 432 592815569 592815700 7.170000e-32 148.0
24 TraesCS6B01G169500 chr5B 88.764 89 9 1 3018 3106 176588380 176588293 1.220000e-19 108.0
25 TraesCS6B01G169500 chr7B 87.973 449 43 6 433 878 637584338 637584778 1.320000e-143 520.0
26 TraesCS6B01G169500 chr7B 88.836 421 39 6 457 873 667198658 667198242 7.930000e-141 510.0
27 TraesCS6B01G169500 chr7B 94.516 310 16 1 3 311 592992448 592992757 8.050000e-131 477.0
28 TraesCS6B01G169500 chr7B 87.727 220 26 1 1227 1446 635065268 635065486 4.100000e-64 255.0
29 TraesCS6B01G169500 chr7B 87.273 220 27 1 1227 1446 635170861 635171079 1.910000e-62 250.0
30 TraesCS6B01G169500 chr5D 87.805 451 45 7 433 880 254594077 254594520 1.320000e-143 520.0
31 TraesCS6B01G169500 chr5D 88.764 89 9 1 3018 3106 164605001 164604914 1.220000e-19 108.0
32 TraesCS6B01G169500 chr4D 88.453 433 42 7 457 884 40799368 40798939 1.710000e-142 516.0
33 TraesCS6B01G169500 chr4D 86.667 135 15 3 303 435 493335956 493336089 2.580000e-31 147.0
34 TraesCS6B01G169500 chr4D 89.888 89 8 1 3018 3106 296729548 296729461 2.610000e-21 113.0
35 TraesCS6B01G169500 chr7D 88.128 438 41 5 433 867 568365559 568365988 7.930000e-141 510.0
36 TraesCS6B01G169500 chr7D 87.615 218 27 0 1229 1446 575149320 575149103 1.480000e-63 254.0
37 TraesCS6B01G169500 chr7D 87.264 212 27 0 1229 1440 575217792 575217581 3.200000e-60 243.0
38 TraesCS6B01G169500 chr7D 88.764 89 9 1 3018 3106 375400762 375400849 1.220000e-19 108.0
39 TraesCS6B01G169500 chr2A 87.583 451 43 6 433 880 136642770 136642330 7.930000e-141 510.0
40 TraesCS6B01G169500 chr2A 89.552 134 11 2 303 434 728761389 728761521 1.980000e-37 167.0
41 TraesCS6B01G169500 chr2A 87.755 98 9 3 336 433 682026180 682026086 9.400000e-21 111.0
42 TraesCS6B01G169500 chr4B 83.630 562 57 14 303 839 497180741 497181292 2.220000e-136 496.0
43 TraesCS6B01G169500 chr4B 89.888 89 8 1 3018 3106 366930302 366930215 2.610000e-21 113.0
44 TraesCS6B01G169500 chr4B 84.615 104 12 4 3014 3116 142518821 142518921 2.040000e-17 100.0
45 TraesCS6B01G169500 chr7A 88.406 207 24 0 1240 1446 664873423 664873217 1.910000e-62 250.0
46 TraesCS6B01G169500 chr7A 88.095 210 21 4 1239 1446 664603389 664603596 2.470000e-61 246.0
47 TraesCS6B01G169500 chr7A 86.058 208 29 0 1239 1446 664780906 664780699 1.160000e-54 224.0
48 TraesCS6B01G169500 chr1D 89.888 89 8 1 3018 3106 305226293 305226380 2.610000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G169500 chr6B 181470929 181474134 3205 False 5921.0 5921 100.0000 1 3206 1 chr6B.!!$F1 3205
1 TraesCS6B01G169500 chr6D 97262749 97265184 2435 False 1492.0 2335 88.5200 871 3206 2 chr6D.!!$F2 2335
2 TraesCS6B01G169500 chr6A 116336148 116338509 2361 False 1484.5 2228 91.0785 871 3106 2 chr6A.!!$F2 2235
3 TraesCS6B01G169500 chr1B 94574703 94575252 549 False 688.0 688 89.2280 321 875 1 chr1B.!!$F3 554
4 TraesCS6B01G169500 chr4B 497180741 497181292 551 False 496.0 496 83.6300 303 839 1 chr4B.!!$F2 536


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
268 269 0.033920 AGAGTTGCGATGTGCTCACA 59.966 50.0 5.08 5.08 46.63 3.58 F
680 706 0.179043 TGTGGGCGACTTGCTAAACA 60.179 50.0 0.31 0.00 45.43 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1072 1109 0.034960 GAGGAGAAAAGCTGGGGTCC 60.035 60.0 0.0 0.0 0.0 4.46 R
2347 2438 0.249447 TGTGACAAGCCAGTGAGACG 60.249 55.0 0.0 0.0 0.0 4.18 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.983402 CTGCAGTTGTCATTGTCTGG 57.017 50.000 5.25 0.00 0.00 3.86
20 21 2.224606 CTGCAGTTGTCATTGTCTGGT 58.775 47.619 5.25 0.00 0.00 4.00
21 22 2.221169 TGCAGTTGTCATTGTCTGGTC 58.779 47.619 0.00 0.00 0.00 4.02
22 23 1.537202 GCAGTTGTCATTGTCTGGTCC 59.463 52.381 0.00 0.00 0.00 4.46
23 24 2.154462 CAGTTGTCATTGTCTGGTCCC 58.846 52.381 0.00 0.00 0.00 4.46
24 25 2.057922 AGTTGTCATTGTCTGGTCCCT 58.942 47.619 0.00 0.00 0.00 4.20
25 26 2.039084 AGTTGTCATTGTCTGGTCCCTC 59.961 50.000 0.00 0.00 0.00 4.30
26 27 2.030027 TGTCATTGTCTGGTCCCTCT 57.970 50.000 0.00 0.00 0.00 3.69
27 28 2.338809 TGTCATTGTCTGGTCCCTCTT 58.661 47.619 0.00 0.00 0.00 2.85
28 29 2.303022 TGTCATTGTCTGGTCCCTCTTC 59.697 50.000 0.00 0.00 0.00 2.87
29 30 1.909302 TCATTGTCTGGTCCCTCTTCC 59.091 52.381 0.00 0.00 0.00 3.46
30 31 1.630369 CATTGTCTGGTCCCTCTTCCA 59.370 52.381 0.00 0.00 0.00 3.53
31 32 2.044793 TTGTCTGGTCCCTCTTCCAT 57.955 50.000 0.00 0.00 33.01 3.41
32 33 1.279496 TGTCTGGTCCCTCTTCCATG 58.721 55.000 0.00 0.00 33.01 3.66
33 34 1.280457 GTCTGGTCCCTCTTCCATGT 58.720 55.000 0.00 0.00 33.01 3.21
34 35 1.630878 GTCTGGTCCCTCTTCCATGTT 59.369 52.381 0.00 0.00 33.01 2.71
35 36 1.909302 TCTGGTCCCTCTTCCATGTTC 59.091 52.381 0.00 0.00 33.01 3.18
36 37 1.630369 CTGGTCCCTCTTCCATGTTCA 59.370 52.381 0.00 0.00 33.01 3.18
37 38 2.240667 CTGGTCCCTCTTCCATGTTCAT 59.759 50.000 0.00 0.00 33.01 2.57
38 39 2.649312 TGGTCCCTCTTCCATGTTCATT 59.351 45.455 0.00 0.00 0.00 2.57
39 40 3.075882 TGGTCCCTCTTCCATGTTCATTT 59.924 43.478 0.00 0.00 0.00 2.32
40 41 4.290985 TGGTCCCTCTTCCATGTTCATTTA 59.709 41.667 0.00 0.00 0.00 1.40
41 42 5.222233 TGGTCCCTCTTCCATGTTCATTTAA 60.222 40.000 0.00 0.00 0.00 1.52
42 43 5.125578 GGTCCCTCTTCCATGTTCATTTAAC 59.874 44.000 0.00 0.00 38.67 2.01
43 44 5.946377 GTCCCTCTTCCATGTTCATTTAACT 59.054 40.000 0.00 0.00 38.99 2.24
44 45 5.945784 TCCCTCTTCCATGTTCATTTAACTG 59.054 40.000 0.00 0.00 38.99 3.16
45 46 5.393461 CCCTCTTCCATGTTCATTTAACTGC 60.393 44.000 0.00 0.00 38.99 4.40
46 47 5.183713 CCTCTTCCATGTTCATTTAACTGCA 59.816 40.000 0.00 0.00 38.99 4.41
47 48 6.258230 TCTTCCATGTTCATTTAACTGCAG 57.742 37.500 13.48 13.48 38.99 4.41
48 49 5.769662 TCTTCCATGTTCATTTAACTGCAGT 59.230 36.000 15.25 15.25 38.99 4.40
49 50 6.265196 TCTTCCATGTTCATTTAACTGCAGTT 59.735 34.615 32.97 32.97 38.99 3.16
50 51 5.771469 TCCATGTTCATTTAACTGCAGTTG 58.229 37.500 36.50 23.43 38.90 3.16
51 52 4.386652 CCATGTTCATTTAACTGCAGTTGC 59.613 41.667 36.50 19.02 38.90 4.17
52 53 3.976169 TGTTCATTTAACTGCAGTTGCC 58.024 40.909 36.50 17.24 38.90 4.52
53 54 3.382865 TGTTCATTTAACTGCAGTTGCCA 59.617 39.130 36.50 22.26 38.90 4.92
54 55 4.039004 TGTTCATTTAACTGCAGTTGCCAT 59.961 37.500 36.50 23.31 38.90 4.40
55 56 4.177165 TCATTTAACTGCAGTTGCCATG 57.823 40.909 36.50 30.50 41.18 3.66
56 57 3.573538 TCATTTAACTGCAGTTGCCATGT 59.426 39.130 36.50 15.57 41.18 3.21
57 58 3.641437 TTTAACTGCAGTTGCCATGTC 57.359 42.857 36.50 0.00 41.18 3.06
58 59 1.155889 TAACTGCAGTTGCCATGTCG 58.844 50.000 36.50 0.67 41.18 4.35
59 60 2.133742 AACTGCAGTTGCCATGTCGC 62.134 55.000 30.66 0.00 41.18 5.19
60 61 2.281692 TGCAGTTGCCATGTCGCT 60.282 55.556 1.06 0.00 41.18 4.93
61 62 2.177531 GCAGTTGCCATGTCGCTG 59.822 61.111 0.00 0.00 34.31 5.18
62 63 2.327343 GCAGTTGCCATGTCGCTGA 61.327 57.895 2.90 0.00 34.31 4.26
63 64 1.855213 GCAGTTGCCATGTCGCTGAA 61.855 55.000 2.90 0.00 34.31 3.02
64 65 0.110056 CAGTTGCCATGTCGCTGAAC 60.110 55.000 0.00 0.00 0.00 3.18
65 66 0.250467 AGTTGCCATGTCGCTGAACT 60.250 50.000 0.00 0.00 0.00 3.01
66 67 1.001974 AGTTGCCATGTCGCTGAACTA 59.998 47.619 0.00 0.00 0.00 2.24
67 68 1.128692 GTTGCCATGTCGCTGAACTAC 59.871 52.381 0.00 0.00 0.00 2.73
68 69 0.735978 TGCCATGTCGCTGAACTACG 60.736 55.000 0.00 0.00 0.00 3.51
69 70 1.421410 GCCATGTCGCTGAACTACGG 61.421 60.000 0.00 0.00 0.00 4.02
70 71 0.108804 CCATGTCGCTGAACTACGGT 60.109 55.000 0.00 0.00 0.00 4.83
71 72 1.671850 CCATGTCGCTGAACTACGGTT 60.672 52.381 0.00 0.00 38.52 4.44
72 73 1.390123 CATGTCGCTGAACTACGGTTG 59.610 52.381 0.00 0.00 35.58 3.77
73 74 0.942410 TGTCGCTGAACTACGGTTGC 60.942 55.000 0.00 0.00 35.58 4.17
74 75 1.373748 TCGCTGAACTACGGTTGCC 60.374 57.895 0.00 0.00 35.58 4.52
75 76 1.666553 CGCTGAACTACGGTTGCCA 60.667 57.895 0.00 0.00 35.58 4.92
76 77 1.019278 CGCTGAACTACGGTTGCCAT 61.019 55.000 0.00 0.00 35.58 4.40
77 78 0.447801 GCTGAACTACGGTTGCCATG 59.552 55.000 0.00 0.00 35.58 3.66
78 79 1.808411 CTGAACTACGGTTGCCATGT 58.192 50.000 0.00 0.00 35.58 3.21
79 80 1.732259 CTGAACTACGGTTGCCATGTC 59.268 52.381 0.00 0.00 35.58 3.06
80 81 0.719465 GAACTACGGTTGCCATGTCG 59.281 55.000 0.00 0.00 35.58 4.35
81 82 0.672401 AACTACGGTTGCCATGTCGG 60.672 55.000 0.00 0.00 33.96 4.79
82 83 1.216977 CTACGGTTGCCATGTCGGA 59.783 57.895 0.00 0.00 36.56 4.55
83 84 1.079681 TACGGTTGCCATGTCGGAC 60.080 57.895 0.00 0.00 36.56 4.79
84 85 1.817911 TACGGTTGCCATGTCGGACA 61.818 55.000 14.01 14.01 36.56 4.02
85 86 1.963855 CGGTTGCCATGTCGGACAA 60.964 57.895 15.72 0.00 36.56 3.18
86 87 1.579429 GGTTGCCATGTCGGACAAC 59.421 57.895 15.72 8.08 44.46 3.32
87 88 0.889186 GGTTGCCATGTCGGACAACT 60.889 55.000 15.72 0.00 44.53 3.16
88 89 1.609580 GGTTGCCATGTCGGACAACTA 60.610 52.381 15.72 2.39 44.53 2.24
89 90 1.463444 GTTGCCATGTCGGACAACTAC 59.537 52.381 15.72 10.65 43.12 2.73
90 91 0.682292 TGCCATGTCGGACAACTACA 59.318 50.000 15.72 8.46 36.56 2.74
91 92 1.337728 TGCCATGTCGGACAACTACAG 60.338 52.381 15.72 1.98 36.56 2.74
92 93 1.337823 GCCATGTCGGACAACTACAGT 60.338 52.381 15.72 0.00 36.56 3.55
93 94 2.870435 GCCATGTCGGACAACTACAGTT 60.870 50.000 15.72 0.00 36.12 3.16
104 105 1.247567 ACTACAGTTGCCATGGTTGC 58.752 50.000 14.67 3.52 0.00 4.17
105 106 1.202927 ACTACAGTTGCCATGGTTGCT 60.203 47.619 14.67 5.95 0.00 3.91
106 107 1.470098 CTACAGTTGCCATGGTTGCTC 59.530 52.381 14.67 0.00 0.00 4.26
107 108 0.467844 ACAGTTGCCATGGTTGCTCA 60.468 50.000 14.67 0.00 0.00 4.26
108 109 0.675083 CAGTTGCCATGGTTGCTCAA 59.325 50.000 14.67 5.59 0.00 3.02
109 110 0.675633 AGTTGCCATGGTTGCTCAAC 59.324 50.000 19.02 19.02 40.45 3.18
110 111 0.675633 GTTGCCATGGTTGCTCAACT 59.324 50.000 19.25 0.00 40.94 3.16
111 112 0.675083 TTGCCATGGTTGCTCAACTG 59.325 50.000 14.67 4.33 40.94 3.16
112 113 1.080298 GCCATGGTTGCTCAACTGC 60.080 57.895 14.67 6.92 40.94 4.40
113 114 1.808531 GCCATGGTTGCTCAACTGCA 61.809 55.000 14.67 3.93 40.94 4.41
114 115 0.242825 CCATGGTTGCTCAACTGCAG 59.757 55.000 13.48 13.48 44.27 4.41
115 116 0.956633 CATGGTTGCTCAACTGCAGT 59.043 50.000 15.25 15.25 44.27 4.40
116 117 1.338973 CATGGTTGCTCAACTGCAGTT 59.661 47.619 26.36 26.36 44.27 3.16
129 130 5.362556 AACTGCAGTTGTCATGTATGTTC 57.637 39.130 30.66 0.00 36.80 3.18
130 131 4.645535 ACTGCAGTTGTCATGTATGTTCT 58.354 39.130 15.25 0.00 0.00 3.01
131 132 4.453478 ACTGCAGTTGTCATGTATGTTCTG 59.547 41.667 15.25 0.00 0.00 3.02
132 133 3.752747 TGCAGTTGTCATGTATGTTCTGG 59.247 43.478 0.00 0.00 0.00 3.86
133 134 3.753272 GCAGTTGTCATGTATGTTCTGGT 59.247 43.478 0.00 0.00 0.00 4.00
134 135 4.142816 GCAGTTGTCATGTATGTTCTGGTC 60.143 45.833 0.00 0.00 0.00 4.02
135 136 5.240891 CAGTTGTCATGTATGTTCTGGTCT 58.759 41.667 0.00 0.00 0.00 3.85
136 137 6.398095 CAGTTGTCATGTATGTTCTGGTCTA 58.602 40.000 0.00 0.00 0.00 2.59
137 138 6.311445 CAGTTGTCATGTATGTTCTGGTCTAC 59.689 42.308 0.00 0.00 0.00 2.59
138 139 6.211584 AGTTGTCATGTATGTTCTGGTCTACT 59.788 38.462 0.00 0.00 0.00 2.57
139 140 5.965922 TGTCATGTATGTTCTGGTCTACTG 58.034 41.667 0.00 0.00 0.00 2.74
140 141 4.806247 GTCATGTATGTTCTGGTCTACTGC 59.194 45.833 0.00 0.00 0.00 4.40
141 142 4.466015 TCATGTATGTTCTGGTCTACTGCA 59.534 41.667 0.00 0.00 0.00 4.41
142 143 4.456280 TGTATGTTCTGGTCTACTGCAG 57.544 45.455 13.48 13.48 0.00 4.41
143 144 3.832490 TGTATGTTCTGGTCTACTGCAGT 59.168 43.478 25.12 25.12 0.00 4.40
144 145 4.283467 TGTATGTTCTGGTCTACTGCAGTT 59.717 41.667 27.06 9.41 0.00 3.16
145 146 3.111853 TGTTCTGGTCTACTGCAGTTG 57.888 47.619 27.06 23.41 0.00 3.16
146 147 1.801178 GTTCTGGTCTACTGCAGTTGC 59.199 52.381 27.06 17.71 42.50 4.17
147 148 0.321671 TCTGGTCTACTGCAGTTGCC 59.678 55.000 27.06 25.05 41.18 4.52
148 149 0.035317 CTGGTCTACTGCAGTTGCCA 59.965 55.000 28.04 28.04 41.18 4.92
149 150 0.692476 TGGTCTACTGCAGTTGCCAT 59.308 50.000 27.06 0.12 41.18 4.40
150 151 1.089920 GGTCTACTGCAGTTGCCATG 58.910 55.000 27.06 8.76 41.18 3.66
151 152 1.339055 GGTCTACTGCAGTTGCCATGA 60.339 52.381 27.06 10.89 41.18 3.07
152 153 2.636830 GTCTACTGCAGTTGCCATGAT 58.363 47.619 27.06 0.00 41.18 2.45
153 154 3.012518 GTCTACTGCAGTTGCCATGATT 58.987 45.455 27.06 0.00 41.18 2.57
154 155 3.441572 GTCTACTGCAGTTGCCATGATTT 59.558 43.478 27.06 0.00 41.18 2.17
155 156 3.691118 TCTACTGCAGTTGCCATGATTTC 59.309 43.478 27.06 0.00 41.18 2.17
156 157 2.241160 ACTGCAGTTGCCATGATTTCA 58.759 42.857 15.25 0.00 41.18 2.69
157 158 2.629137 ACTGCAGTTGCCATGATTTCAA 59.371 40.909 15.25 0.00 41.18 2.69
158 159 3.069872 ACTGCAGTTGCCATGATTTCAAA 59.930 39.130 15.25 0.00 41.18 2.69
159 160 4.059511 CTGCAGTTGCCATGATTTCAAAA 58.940 39.130 5.25 0.00 41.18 2.44
160 161 3.808726 TGCAGTTGCCATGATTTCAAAAC 59.191 39.130 1.06 0.00 41.18 2.43
161 162 4.060205 GCAGTTGCCATGATTTCAAAACT 58.940 39.130 0.00 0.00 34.31 2.66
162 163 4.512571 GCAGTTGCCATGATTTCAAAACTT 59.487 37.500 0.00 0.00 34.31 2.66
163 164 5.007921 GCAGTTGCCATGATTTCAAAACTTT 59.992 36.000 0.00 0.00 34.31 2.66
164 165 6.202570 GCAGTTGCCATGATTTCAAAACTTTA 59.797 34.615 0.00 0.00 34.31 1.85
165 166 7.569957 GCAGTTGCCATGATTTCAAAACTTTAG 60.570 37.037 0.00 0.00 34.31 1.85
166 167 6.930722 AGTTGCCATGATTTCAAAACTTTAGG 59.069 34.615 0.00 0.00 0.00 2.69
167 168 6.662865 TGCCATGATTTCAAAACTTTAGGA 57.337 33.333 0.00 0.00 0.00 2.94
168 169 6.690530 TGCCATGATTTCAAAACTTTAGGAG 58.309 36.000 0.00 0.00 0.00 3.69
169 170 6.267471 TGCCATGATTTCAAAACTTTAGGAGT 59.733 34.615 0.00 0.00 41.47 3.85
179 180 3.697619 ACTTTAGGAGTTGCCACCTAC 57.302 47.619 0.00 0.00 38.31 3.18
180 181 3.248888 ACTTTAGGAGTTGCCACCTACT 58.751 45.455 0.00 0.00 38.31 2.57
181 182 4.422984 ACTTTAGGAGTTGCCACCTACTA 58.577 43.478 0.00 0.00 38.31 1.82
182 183 4.842380 ACTTTAGGAGTTGCCACCTACTAA 59.158 41.667 0.00 0.00 38.31 2.24
183 184 4.813750 TTAGGAGTTGCCACCTACTAAC 57.186 45.455 0.00 0.00 38.31 2.34
184 185 2.616524 AGGAGTTGCCACCTACTAACA 58.383 47.619 0.00 0.00 40.02 2.41
185 186 2.302157 AGGAGTTGCCACCTACTAACAC 59.698 50.000 0.00 0.00 40.02 3.32
186 187 2.302157 GGAGTTGCCACCTACTAACACT 59.698 50.000 0.00 0.00 36.34 3.55
187 188 3.512724 GGAGTTGCCACCTACTAACACTA 59.487 47.826 0.00 0.00 36.34 2.74
188 189 4.381718 GGAGTTGCCACCTACTAACACTAG 60.382 50.000 0.00 0.00 36.34 2.57
189 190 3.514309 AGTTGCCACCTACTAACACTAGG 59.486 47.826 0.00 0.00 37.40 3.02
190 191 1.829222 TGCCACCTACTAACACTAGGC 59.171 52.381 0.00 0.00 41.15 3.93
191 192 1.829222 GCCACCTACTAACACTAGGCA 59.171 52.381 0.00 0.00 40.50 4.75
192 193 2.159085 GCCACCTACTAACACTAGGCAG 60.159 54.545 0.00 0.00 40.50 4.85
193 194 3.097614 CCACCTACTAACACTAGGCAGT 58.902 50.000 0.00 0.00 35.04 4.40
194 195 3.514309 CCACCTACTAACACTAGGCAGTT 59.486 47.826 0.00 0.00 35.04 3.16
195 196 4.495422 CACCTACTAACACTAGGCAGTTG 58.505 47.826 7.49 0.73 35.04 3.16
196 197 3.056035 ACCTACTAACACTAGGCAGTTGC 60.056 47.826 7.49 0.00 35.04 4.17
210 211 3.466836 GCAGTTGCCATATAGCACTACA 58.533 45.455 0.00 0.00 43.97 2.74
211 212 3.876914 GCAGTTGCCATATAGCACTACAA 59.123 43.478 0.00 0.00 43.97 2.41
212 213 4.335315 GCAGTTGCCATATAGCACTACAAA 59.665 41.667 0.00 0.00 43.97 2.83
213 214 5.163663 GCAGTTGCCATATAGCACTACAAAA 60.164 40.000 0.00 0.00 43.97 2.44
214 215 6.624861 GCAGTTGCCATATAGCACTACAAAAA 60.625 38.462 0.00 0.00 43.97 1.94
249 250 6.702716 AAAAACATGTTCGGGTAAAAGAGA 57.297 33.333 12.39 0.00 0.00 3.10
250 251 5.941948 AAACATGTTCGGGTAAAAGAGAG 57.058 39.130 12.39 0.00 0.00 3.20
251 252 4.884668 ACATGTTCGGGTAAAAGAGAGA 57.115 40.909 0.00 0.00 0.00 3.10
252 253 4.822026 ACATGTTCGGGTAAAAGAGAGAG 58.178 43.478 0.00 0.00 0.00 3.20
253 254 4.283722 ACATGTTCGGGTAAAAGAGAGAGT 59.716 41.667 0.00 0.00 0.00 3.24
254 255 4.950205 TGTTCGGGTAAAAGAGAGAGTT 57.050 40.909 0.00 0.00 0.00 3.01
255 256 4.628074 TGTTCGGGTAAAAGAGAGAGTTG 58.372 43.478 0.00 0.00 0.00 3.16
256 257 3.314541 TCGGGTAAAAGAGAGAGTTGC 57.685 47.619 0.00 0.00 0.00 4.17
257 258 1.993370 CGGGTAAAAGAGAGAGTTGCG 59.007 52.381 0.00 0.00 0.00 4.85
258 259 2.352421 CGGGTAAAAGAGAGAGTTGCGA 60.352 50.000 0.00 0.00 0.00 5.10
259 260 3.676324 CGGGTAAAAGAGAGAGTTGCGAT 60.676 47.826 0.00 0.00 0.00 4.58
260 261 3.619038 GGGTAAAAGAGAGAGTTGCGATG 59.381 47.826 0.00 0.00 0.00 3.84
261 262 4.246458 GGTAAAAGAGAGAGTTGCGATGT 58.754 43.478 0.00 0.00 0.00 3.06
262 263 4.092091 GGTAAAAGAGAGAGTTGCGATGTG 59.908 45.833 0.00 0.00 0.00 3.21
263 264 1.719600 AAGAGAGAGTTGCGATGTGC 58.280 50.000 0.00 0.00 46.70 4.57
264 265 0.894141 AGAGAGAGTTGCGATGTGCT 59.106 50.000 0.00 0.00 46.63 4.40
265 266 1.135141 AGAGAGAGTTGCGATGTGCTC 60.135 52.381 0.00 0.00 46.63 4.26
266 267 0.605083 AGAGAGTTGCGATGTGCTCA 59.395 50.000 0.00 0.00 46.63 4.26
267 268 0.718343 GAGAGTTGCGATGTGCTCAC 59.282 55.000 0.00 0.00 46.63 3.51
268 269 0.033920 AGAGTTGCGATGTGCTCACA 59.966 50.000 5.08 5.08 46.63 3.58
269 270 0.867746 GAGTTGCGATGTGCTCACAA 59.132 50.000 6.81 0.00 45.41 3.33
270 271 0.870393 AGTTGCGATGTGCTCACAAG 59.130 50.000 6.81 5.77 45.41 3.16
280 281 4.192000 CTCACAAGCACGCTAGGG 57.808 61.111 5.05 5.05 0.00 3.53
288 289 2.046892 CACGCTAGGGCAGTTGCT 60.047 61.111 6.73 0.00 41.70 3.91
289 290 1.218047 CACGCTAGGGCAGTTGCTA 59.782 57.895 6.73 0.00 41.70 3.49
290 291 0.179073 CACGCTAGGGCAGTTGCTAT 60.179 55.000 6.73 0.00 41.70 2.97
291 292 0.179073 ACGCTAGGGCAGTTGCTATG 60.179 55.000 6.73 0.00 41.70 2.23
292 293 0.179073 CGCTAGGGCAGTTGCTATGT 60.179 55.000 3.88 0.00 41.70 2.29
293 294 1.068588 CGCTAGGGCAGTTGCTATGTA 59.931 52.381 3.88 0.00 41.70 2.29
294 295 2.483013 CGCTAGGGCAGTTGCTATGTAA 60.483 50.000 3.88 0.00 41.70 2.41
295 296 3.541632 GCTAGGGCAGTTGCTATGTAAA 58.458 45.455 3.88 0.00 41.70 2.01
296 297 3.945285 GCTAGGGCAGTTGCTATGTAAAA 59.055 43.478 3.88 0.00 41.70 1.52
297 298 4.398044 GCTAGGGCAGTTGCTATGTAAAAA 59.602 41.667 3.88 0.00 41.70 1.94
319 320 5.712152 AAAAGAGTTGCCATGTAAAGGAG 57.288 39.130 0.00 0.00 0.00 3.69
323 325 5.006386 AGAGTTGCCATGTAAAGGAGAAAG 58.994 41.667 0.00 0.00 0.00 2.62
326 328 2.819608 TGCCATGTAAAGGAGAAAGCAC 59.180 45.455 0.00 0.00 0.00 4.40
330 332 4.460382 CCATGTAAAGGAGAAAGCACATGT 59.540 41.667 10.56 0.00 40.90 3.21
397 401 1.533625 GCAGTTGCCATGTACCTTGA 58.466 50.000 0.00 0.00 34.31 3.02
415 419 2.499197 TGAAGAAACGCATGGCAACTA 58.501 42.857 0.00 0.00 37.61 2.24
420 424 0.240945 AACGCATGGCAACTAACAGC 59.759 50.000 0.00 0.00 37.61 4.40
476 480 2.172505 TGGCAGTTACCATCTACCATGG 59.827 50.000 11.19 11.19 44.54 3.66
481 485 5.066505 GCAGTTACCATCTACCATGGAAAAG 59.933 44.000 21.47 12.67 41.64 2.27
482 486 6.180472 CAGTTACCATCTACCATGGAAAAGT 58.820 40.000 21.47 10.16 41.64 2.66
525 529 5.698089 CAGAGAGTTGACATCTGCTTACAAA 59.302 40.000 4.22 0.00 34.55 2.83
530 534 6.265577 AGTTGACATCTGCTTACAAACAAAC 58.734 36.000 0.00 0.00 0.00 2.93
622 646 1.732259 GCGTGTGGGTGAAGTGATAAG 59.268 52.381 0.00 0.00 0.00 1.73
644 670 2.745698 CACACCAGCCTCTCTGCA 59.254 61.111 0.00 0.00 41.50 4.41
670 696 1.381165 AAAACTGGTGTGTGGGCGAC 61.381 55.000 0.00 0.00 0.00 5.19
680 706 0.179043 TGTGGGCGACTTGCTAAACA 60.179 50.000 0.31 0.00 45.43 2.83
693 719 1.749286 GCTAAACACCCACACACCAGT 60.749 52.381 0.00 0.00 0.00 4.00
697 723 1.227943 CACCCACACACCAGTCCTG 60.228 63.158 0.00 0.00 0.00 3.86
698 724 1.692749 ACCCACACACCAGTCCTGT 60.693 57.895 0.00 0.00 0.00 4.00
732 758 4.295119 ACGTGTGGGCGACTGGAC 62.295 66.667 0.31 0.00 35.59 4.02
749 775 1.003839 ACGAATGCCCACACACGAT 60.004 52.632 0.00 0.00 33.71 3.73
764 790 0.323178 ACGATCCCAGTCCTACGTGT 60.323 55.000 0.00 0.00 32.93 4.49
814 840 0.396435 TCGTGCAGAAGTGGTTGGAT 59.604 50.000 0.00 0.00 0.00 3.41
818 844 1.699083 TGCAGAAGTGGTTGGATGAGA 59.301 47.619 0.00 0.00 0.00 3.27
832 858 2.554142 GATGAGAATCCATGCGTGTGA 58.446 47.619 4.96 2.39 0.00 3.58
875 901 2.285950 CGTGTGGGCGTTAATATTTCCG 60.286 50.000 0.00 0.00 0.00 4.30
884 910 8.848182 TGGGCGTTAATATTTCCGTAAAAATAT 58.152 29.630 0.00 0.00 41.40 1.28
973 1001 4.351127 CCCCCTACGCCTCTATAAAGTAT 58.649 47.826 0.00 0.00 0.00 2.12
974 1002 5.513233 CCCCCTACGCCTCTATAAAGTATA 58.487 45.833 0.00 0.00 0.00 1.47
981 1009 4.940046 CGCCTCTATAAAGTATAGGACGGA 59.060 45.833 0.00 0.00 38.88 4.69
1028 1060 0.738389 CCGTCCACTGCAAACAAACT 59.262 50.000 0.00 0.00 0.00 2.66
1029 1061 1.268539 CCGTCCACTGCAAACAAACTC 60.269 52.381 0.00 0.00 0.00 3.01
1030 1062 1.670811 CGTCCACTGCAAACAAACTCT 59.329 47.619 0.00 0.00 0.00 3.24
1066 1103 4.862823 CTCCCTCCCTCCGTCCCC 62.863 77.778 0.00 0.00 0.00 4.81
1093 1130 0.476611 ACCCCAGCTTTTCTCCTCCT 60.477 55.000 0.00 0.00 0.00 3.69
1094 1131 0.254462 CCCCAGCTTTTCTCCTCCTC 59.746 60.000 0.00 0.00 0.00 3.71
1095 1132 0.254462 CCCAGCTTTTCTCCTCCTCC 59.746 60.000 0.00 0.00 0.00 4.30
1224 1261 4.717629 CGAAGCAGGCGTCCACGA 62.718 66.667 2.58 0.00 43.02 4.35
1514 1570 2.993853 CTGGAGAACTCTGCCCCC 59.006 66.667 1.86 0.00 32.95 5.40
1592 1648 1.476845 TACAGTGGCAGGCCGAAGAA 61.477 55.000 5.74 0.00 39.42 2.52
1624 1684 2.158143 AGCGAGGGTTAGGATAGGGATT 60.158 50.000 0.00 0.00 0.00 3.01
1625 1685 3.077088 AGCGAGGGTTAGGATAGGGATTA 59.923 47.826 0.00 0.00 0.00 1.75
1711 1771 3.057586 TGTTCCTTTTTCACCCCCTCTA 58.942 45.455 0.00 0.00 0.00 2.43
1727 1787 5.071115 CCCCCTCTAGTTCTAGGAATTTCAG 59.929 48.000 6.96 0.00 34.58 3.02
1728 1788 5.663556 CCCCTCTAGTTCTAGGAATTTCAGT 59.336 44.000 6.96 0.00 34.58 3.41
1766 1826 1.005332 TGTGTGAGGGAGAGAGAGAGG 59.995 57.143 0.00 0.00 0.00 3.69
1768 1828 0.923358 GTGAGGGAGAGAGAGAGGGA 59.077 60.000 0.00 0.00 0.00 4.20
1769 1829 1.133792 GTGAGGGAGAGAGAGAGGGAG 60.134 61.905 0.00 0.00 0.00 4.30
1772 1833 0.106217 GGGAGAGAGAGAGGGAGGTG 60.106 65.000 0.00 0.00 0.00 4.00
1781 1842 1.964933 GAGAGGGAGGTGGTAGTATGC 59.035 57.143 0.00 0.00 0.00 3.14
1808 1870 4.079253 GTGCTAGGGATTTTGAGGTTTCA 58.921 43.478 0.00 0.00 0.00 2.69
1824 1886 7.227873 TGAGGTTTCAGTGTTAACCATATGAA 58.772 34.615 22.88 5.61 44.99 2.57
1895 1962 2.936993 GCACTACACATTGGTCTCCCTG 60.937 54.545 0.00 0.00 0.00 4.45
1905 1972 1.641192 TGGTCTCCCTGCTTCTCTCTA 59.359 52.381 0.00 0.00 0.00 2.43
1906 1973 2.028876 GGTCTCCCTGCTTCTCTCTAC 58.971 57.143 0.00 0.00 0.00 2.59
1985 2054 5.600908 TGAATTCCTCGAAAGTTTTACGG 57.399 39.130 2.27 0.00 0.00 4.02
1986 2055 5.058490 TGAATTCCTCGAAAGTTTTACGGT 58.942 37.500 2.27 0.00 0.00 4.83
2067 2136 7.396540 ACATTGTTATCCTCTGGTTCATTTC 57.603 36.000 0.00 0.00 0.00 2.17
2079 2148 5.244402 TCTGGTTCATTTCACTGAATTGCAT 59.756 36.000 8.28 0.00 37.47 3.96
2080 2149 5.472148 TGGTTCATTTCACTGAATTGCATC 58.528 37.500 8.28 0.81 37.47 3.91
2107 2195 2.345760 GGGTGCAAGCTGTGATGGG 61.346 63.158 0.00 0.00 0.00 4.00
2110 2198 1.531128 TGCAAGCTGTGATGGGCAA 60.531 52.632 0.00 0.00 0.00 4.52
2155 2243 1.459450 GTCCGGGCAAAGATAGCAAA 58.541 50.000 0.00 0.00 0.00 3.68
2158 2246 0.740737 CGGGCAAAGATAGCAAAGGG 59.259 55.000 0.00 0.00 0.00 3.95
2195 2285 5.391310 GCAGGATATGTGCCGAATAAATGAG 60.391 44.000 0.00 0.00 34.67 2.90
2229 2319 9.679661 TGCAGATATCAACTTTTATTAACTCCA 57.320 29.630 5.32 0.00 0.00 3.86
2238 2328 6.899114 ACTTTTATTAACTCCAAGACAAGCG 58.101 36.000 0.00 0.00 0.00 4.68
2239 2329 6.485648 ACTTTTATTAACTCCAAGACAAGCGT 59.514 34.615 0.00 0.00 0.00 5.07
2258 2348 4.627467 AGCGTTCAAGCAGTACATTTAGAG 59.373 41.667 0.00 0.00 40.15 2.43
2326 2416 7.449704 AGCCAGACTAAAGATTCAAGAAAATGT 59.550 33.333 0.00 0.00 0.00 2.71
2347 2438 0.950116 GCAGCTGGATATGAACTGCC 59.050 55.000 17.12 0.00 46.21 4.85
2411 2502 6.183360 GCTAACATCTTCAGCAGTGTTCTTAG 60.183 42.308 0.00 0.00 36.34 2.18
2427 2519 7.448469 AGTGTTCTTAGAAGTACATTGCCATTT 59.552 33.333 5.22 0.00 38.34 2.32
2428 2520 7.538678 GTGTTCTTAGAAGTACATTGCCATTTG 59.461 37.037 5.22 0.00 38.34 2.32
2429 2521 6.194796 TCTTAGAAGTACATTGCCATTTGC 57.805 37.500 0.00 0.00 41.77 3.68
2473 2565 7.595819 TTGGTTTGGTTTTCAGTTGATATCT 57.404 32.000 3.98 0.00 0.00 1.98
2475 2567 6.775142 TGGTTTGGTTTTCAGTTGATATCTGA 59.225 34.615 3.98 0.00 39.71 3.27
2503 2595 0.384725 CGCAGCGGTTTCAAGTGAAG 60.385 55.000 7.00 0.00 35.21 3.02
2544 2636 7.733773 TGAAGACAGTCCAGATCCTTATAAA 57.266 36.000 0.00 0.00 0.00 1.40
2601 2724 3.581024 ATACATTGGTGCAAGCTTGTG 57.419 42.857 26.55 17.77 34.31 3.33
2609 2795 1.855513 TGCAAGCTTGTGAATGCAAC 58.144 45.000 26.55 8.02 45.04 4.17
2617 2803 3.181497 GCTTGTGAATGCAACCGATATGT 60.181 43.478 0.00 0.00 0.00 2.29
2624 2810 2.285083 TGCAACCGATATGTTAGTGGC 58.715 47.619 0.00 0.00 0.00 5.01
2644 2830 0.107214 CCGGGCAAAGATAGCAAGGA 60.107 55.000 0.00 0.00 33.68 3.36
2645 2831 1.477558 CCGGGCAAAGATAGCAAGGAT 60.478 52.381 0.00 0.00 33.68 3.24
2646 2832 2.224523 CCGGGCAAAGATAGCAAGGATA 60.225 50.000 0.00 0.00 33.68 2.59
2647 2833 3.560025 CCGGGCAAAGATAGCAAGGATAT 60.560 47.826 0.00 0.00 33.68 1.63
2648 2834 4.074970 CGGGCAAAGATAGCAAGGATATT 58.925 43.478 0.00 0.00 0.00 1.28
2649 2835 4.154918 CGGGCAAAGATAGCAAGGATATTC 59.845 45.833 0.00 0.00 0.00 1.75
2757 2943 8.107399 AGATATGATTGGAGCATTTGTACATG 57.893 34.615 0.00 0.00 0.00 3.21
2765 2951 4.497006 GGAGCATTTGTACATGTGATCTGC 60.497 45.833 19.28 10.85 0.00 4.26
2799 2985 4.600983 AGAATATCTCCAGCCAGGCTAAAT 59.399 41.667 15.64 7.89 36.40 1.40
2840 3026 0.035630 AATCTGCACTGCACTCTCCC 60.036 55.000 0.00 0.00 33.79 4.30
2861 3047 3.314080 CCGTTTCTGACTTTGCCTGTAAA 59.686 43.478 0.00 0.00 0.00 2.01
2864 3050 5.220777 CGTTTCTGACTTTGCCTGTAAAAGA 60.221 40.000 3.09 0.00 37.91 2.52
2865 3051 6.202226 GTTTCTGACTTTGCCTGTAAAAGAG 58.798 40.000 3.09 0.00 37.91 2.85
2868 3054 3.315191 TGACTTTGCCTGTAAAAGAGTGC 59.685 43.478 3.09 0.00 37.91 4.40
2885 3071 5.535333 AGAGTGCTCATCAAATTTTGGTTG 58.465 37.500 9.18 7.71 0.00 3.77
2903 3092 7.517614 TTGGTTGTCATCTTTACAGCAATTA 57.482 32.000 0.00 0.00 30.48 1.40
2915 3104 6.472686 TTACAGCAATTACAAACCAAACCT 57.527 33.333 0.00 0.00 0.00 3.50
2929 3118 9.679661 ACAAACCAAACCTAAAATTCAGAAAAT 57.320 25.926 0.00 0.00 0.00 1.82
2932 3121 8.153479 ACCAAACCTAAAATTCAGAAAATTGC 57.847 30.769 0.00 0.00 0.00 3.56
2933 3122 7.772757 ACCAAACCTAAAATTCAGAAAATTGCA 59.227 29.630 0.00 0.00 0.00 4.08
2934 3123 8.284693 CCAAACCTAAAATTCAGAAAATTGCAG 58.715 33.333 0.00 0.00 0.00 4.41
2935 3124 7.425577 AACCTAAAATTCAGAAAATTGCAGC 57.574 32.000 0.00 0.00 0.00 5.25
2967 3157 1.072159 GCAGTCTCACTGGCCTGTT 59.928 57.895 13.36 0.00 46.01 3.16
3028 3219 3.449737 TGTTCTTATCAAGTACTCCCCCG 59.550 47.826 0.00 0.00 30.99 5.73
3121 3321 2.897969 TCACTCCACTCAGTTTAGTCCC 59.102 50.000 0.00 0.00 0.00 4.46
3124 3324 4.082136 CACTCCACTCAGTTTAGTCCCTAC 60.082 50.000 0.00 0.00 0.00 3.18
3125 3325 3.087031 TCCACTCAGTTTAGTCCCTACG 58.913 50.000 0.00 0.00 0.00 3.51
3126 3326 2.824341 CCACTCAGTTTAGTCCCTACGT 59.176 50.000 0.00 0.00 0.00 3.57
3128 3328 4.643784 CCACTCAGTTTAGTCCCTACGTAT 59.356 45.833 0.00 0.00 0.00 3.06
3129 3329 5.126707 CCACTCAGTTTAGTCCCTACGTATT 59.873 44.000 0.00 0.00 0.00 1.89
3130 3330 6.264088 CACTCAGTTTAGTCCCTACGTATTC 58.736 44.000 0.00 0.00 0.00 1.75
3131 3331 6.095160 CACTCAGTTTAGTCCCTACGTATTCT 59.905 42.308 0.00 0.00 0.00 2.40
3132 3332 6.095160 ACTCAGTTTAGTCCCTACGTATTCTG 59.905 42.308 0.00 0.00 0.00 3.02
3133 3333 6.182627 TCAGTTTAGTCCCTACGTATTCTGA 58.817 40.000 0.00 0.00 0.00 3.27
3144 3364 2.165845 ACGTATTCTGAAACCGAGGGAG 59.834 50.000 15.83 0.00 0.00 4.30
3155 3375 1.559682 ACCGAGGGAGTACATTGCAAT 59.440 47.619 5.99 5.99 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.224606 ACCAGACAATGACAACTGCAG 58.775 47.619 13.48 13.48 0.00 4.41
2 3 1.537202 GGACCAGACAATGACAACTGC 59.463 52.381 0.00 0.00 0.00 4.40
4 5 2.039084 GAGGGACCAGACAATGACAACT 59.961 50.000 0.00 0.00 0.00 3.16
7 8 2.030027 AGAGGGACCAGACAATGACA 57.970 50.000 0.00 0.00 0.00 3.58
8 9 2.355209 GGAAGAGGGACCAGACAATGAC 60.355 54.545 0.00 0.00 0.00 3.06
9 10 1.909302 GGAAGAGGGACCAGACAATGA 59.091 52.381 0.00 0.00 0.00 2.57
10 11 1.630369 TGGAAGAGGGACCAGACAATG 59.370 52.381 0.00 0.00 0.00 2.82
11 12 2.044793 TGGAAGAGGGACCAGACAAT 57.955 50.000 0.00 0.00 0.00 2.71
12 13 1.630369 CATGGAAGAGGGACCAGACAA 59.370 52.381 0.00 0.00 39.62 3.18
13 14 1.279496 CATGGAAGAGGGACCAGACA 58.721 55.000 0.00 0.00 39.62 3.41
14 15 1.280457 ACATGGAAGAGGGACCAGAC 58.720 55.000 0.00 0.00 39.62 3.51
15 16 1.909302 GAACATGGAAGAGGGACCAGA 59.091 52.381 0.00 0.00 39.62 3.86
16 17 1.630369 TGAACATGGAAGAGGGACCAG 59.370 52.381 0.00 0.00 39.62 4.00
17 18 1.741028 TGAACATGGAAGAGGGACCA 58.259 50.000 0.00 0.00 40.57 4.02
18 19 3.372440 AATGAACATGGAAGAGGGACC 57.628 47.619 0.00 0.00 0.00 4.46
19 20 5.946377 AGTTAAATGAACATGGAAGAGGGAC 59.054 40.000 0.00 0.00 40.86 4.46
20 21 5.945784 CAGTTAAATGAACATGGAAGAGGGA 59.054 40.000 0.00 0.00 40.86 4.20
21 22 5.393461 GCAGTTAAATGAACATGGAAGAGGG 60.393 44.000 7.18 0.00 40.86 4.30
22 23 5.183713 TGCAGTTAAATGAACATGGAAGAGG 59.816 40.000 7.18 0.00 40.86 3.69
23 24 6.072286 ACTGCAGTTAAATGAACATGGAAGAG 60.072 38.462 15.25 0.00 40.86 2.85
24 25 5.769662 ACTGCAGTTAAATGAACATGGAAGA 59.230 36.000 15.25 0.00 40.86 2.87
25 26 6.017400 ACTGCAGTTAAATGAACATGGAAG 57.983 37.500 15.25 0.00 40.86 3.46
26 27 6.215121 CAACTGCAGTTAAATGAACATGGAA 58.785 36.000 30.67 0.00 40.86 3.53
27 28 5.771469 CAACTGCAGTTAAATGAACATGGA 58.229 37.500 30.67 0.00 40.86 3.41
28 29 4.386652 GCAACTGCAGTTAAATGAACATGG 59.613 41.667 30.67 15.06 40.86 3.66
29 30 4.386652 GGCAACTGCAGTTAAATGAACATG 59.613 41.667 30.67 16.50 44.36 3.21
30 31 4.039004 TGGCAACTGCAGTTAAATGAACAT 59.961 37.500 30.67 2.88 44.36 2.71
31 32 3.382865 TGGCAACTGCAGTTAAATGAACA 59.617 39.130 30.67 17.97 44.36 3.18
32 33 3.976169 TGGCAACTGCAGTTAAATGAAC 58.024 40.909 30.67 15.85 44.36 3.18
33 34 4.039004 ACATGGCAACTGCAGTTAAATGAA 59.961 37.500 33.22 19.65 44.36 2.57
34 35 3.573538 ACATGGCAACTGCAGTTAAATGA 59.426 39.130 33.22 19.61 44.36 2.57
35 36 3.916761 ACATGGCAACTGCAGTTAAATG 58.083 40.909 30.67 29.58 44.36 2.32
36 37 3.366273 CGACATGGCAACTGCAGTTAAAT 60.366 43.478 30.67 20.35 44.36 1.40
37 38 2.031245 CGACATGGCAACTGCAGTTAAA 60.031 45.455 30.67 19.09 44.36 1.52
38 39 1.535028 CGACATGGCAACTGCAGTTAA 59.465 47.619 30.67 19.43 44.36 2.01
39 40 1.155889 CGACATGGCAACTGCAGTTA 58.844 50.000 30.67 16.98 44.36 2.24
40 41 1.951510 CGACATGGCAACTGCAGTT 59.048 52.632 26.36 26.36 44.36 3.16
41 42 2.620112 GCGACATGGCAACTGCAGT 61.620 57.895 15.25 15.25 44.36 4.40
42 43 2.177531 GCGACATGGCAACTGCAG 59.822 61.111 13.48 13.48 44.36 4.41
43 44 2.281692 AGCGACATGGCAACTGCA 60.282 55.556 0.00 0.00 44.36 4.41
44 45 1.855213 TTCAGCGACATGGCAACTGC 61.855 55.000 12.73 0.88 41.14 4.40
45 46 0.110056 GTTCAGCGACATGGCAACTG 60.110 55.000 11.56 11.56 34.64 3.16
46 47 0.250467 AGTTCAGCGACATGGCAACT 60.250 50.000 0.00 0.00 34.64 3.16
47 48 1.128692 GTAGTTCAGCGACATGGCAAC 59.871 52.381 0.00 0.00 34.64 4.17
48 49 1.438651 GTAGTTCAGCGACATGGCAA 58.561 50.000 0.00 0.00 34.64 4.52
49 50 0.735978 CGTAGTTCAGCGACATGGCA 60.736 55.000 0.00 0.00 34.64 4.92
50 51 1.421410 CCGTAGTTCAGCGACATGGC 61.421 60.000 0.00 0.00 0.00 4.40
51 52 0.108804 ACCGTAGTTCAGCGACATGG 60.109 55.000 0.00 0.00 0.00 3.66
52 53 1.390123 CAACCGTAGTTCAGCGACATG 59.610 52.381 0.00 0.00 32.45 3.21
53 54 1.710013 CAACCGTAGTTCAGCGACAT 58.290 50.000 0.00 0.00 32.45 3.06
54 55 0.942410 GCAACCGTAGTTCAGCGACA 60.942 55.000 0.00 0.00 32.45 4.35
55 56 1.623973 GGCAACCGTAGTTCAGCGAC 61.624 60.000 0.00 0.00 32.45 5.19
56 57 1.373748 GGCAACCGTAGTTCAGCGA 60.374 57.895 0.00 0.00 32.45 4.93
57 58 1.019278 ATGGCAACCGTAGTTCAGCG 61.019 55.000 0.00 0.00 32.45 5.18
58 59 0.447801 CATGGCAACCGTAGTTCAGC 59.552 55.000 0.00 0.00 32.45 4.26
59 60 1.732259 GACATGGCAACCGTAGTTCAG 59.268 52.381 0.00 0.00 32.45 3.02
60 61 1.803334 GACATGGCAACCGTAGTTCA 58.197 50.000 0.00 0.00 32.45 3.18
61 62 0.719465 CGACATGGCAACCGTAGTTC 59.281 55.000 0.00 0.00 32.45 3.01
62 63 0.672401 CCGACATGGCAACCGTAGTT 60.672 55.000 0.00 0.00 36.33 2.24
63 64 1.079405 CCGACATGGCAACCGTAGT 60.079 57.895 0.00 0.00 0.00 2.73
64 65 1.082117 GTCCGACATGGCAACCGTAG 61.082 60.000 0.00 0.00 37.80 3.51
65 66 1.079681 GTCCGACATGGCAACCGTA 60.080 57.895 0.00 0.00 37.80 4.02
66 67 2.358247 GTCCGACATGGCAACCGT 60.358 61.111 0.00 0.00 37.80 4.83
67 68 1.963855 TTGTCCGACATGGCAACCG 60.964 57.895 1.09 0.00 37.80 4.44
68 69 0.889186 AGTTGTCCGACATGGCAACC 60.889 55.000 1.09 0.00 46.81 3.77
69 70 1.463444 GTAGTTGTCCGACATGGCAAC 59.537 52.381 1.09 5.44 46.38 4.17
70 71 1.070914 TGTAGTTGTCCGACATGGCAA 59.929 47.619 1.09 0.00 37.80 4.52
71 72 0.682292 TGTAGTTGTCCGACATGGCA 59.318 50.000 1.09 0.00 37.80 4.92
72 73 1.337823 ACTGTAGTTGTCCGACATGGC 60.338 52.381 1.09 0.00 37.80 4.40
73 74 2.743636 ACTGTAGTTGTCCGACATGG 57.256 50.000 1.09 0.00 40.09 3.66
84 85 1.613437 GCAACCATGGCAACTGTAGTT 59.387 47.619 13.04 0.00 39.12 2.24
85 86 1.202927 AGCAACCATGGCAACTGTAGT 60.203 47.619 13.04 0.00 37.61 2.73
86 87 1.470098 GAGCAACCATGGCAACTGTAG 59.530 52.381 13.04 0.00 37.61 2.74
87 88 1.202867 TGAGCAACCATGGCAACTGTA 60.203 47.619 13.04 0.00 37.61 2.74
88 89 0.467844 TGAGCAACCATGGCAACTGT 60.468 50.000 13.04 0.00 37.61 3.55
89 90 0.675083 TTGAGCAACCATGGCAACTG 59.325 50.000 13.04 5.49 37.61 3.16
90 91 0.675633 GTTGAGCAACCATGGCAACT 59.324 50.000 19.25 11.63 36.73 3.16
91 92 0.675633 AGTTGAGCAACCATGGCAAC 59.324 50.000 19.02 19.02 42.06 4.17
92 93 0.675083 CAGTTGAGCAACCATGGCAA 59.325 50.000 13.04 4.49 42.06 4.52
93 94 1.808531 GCAGTTGAGCAACCATGGCA 61.809 55.000 13.04 0.00 42.06 4.92
94 95 1.080298 GCAGTTGAGCAACCATGGC 60.080 57.895 13.04 0.00 42.06 4.40
95 96 0.242825 CTGCAGTTGAGCAACCATGG 59.757 55.000 11.19 11.19 45.13 3.66
96 97 0.956633 ACTGCAGTTGAGCAACCATG 59.043 50.000 15.25 4.34 45.13 3.66
97 98 1.696063 AACTGCAGTTGAGCAACCAT 58.304 45.000 30.66 2.58 45.13 3.55
98 99 3.189568 AACTGCAGTTGAGCAACCA 57.810 47.368 30.66 1.68 45.13 3.67
107 108 5.049198 CAGAACATACATGACAACTGCAGTT 60.049 40.000 26.36 26.36 39.12 3.16
108 109 4.453478 CAGAACATACATGACAACTGCAGT 59.547 41.667 15.25 15.25 0.00 4.40
109 110 4.142752 CCAGAACATACATGACAACTGCAG 60.143 45.833 13.48 13.48 0.00 4.41
110 111 3.752747 CCAGAACATACATGACAACTGCA 59.247 43.478 0.00 0.00 0.00 4.41
111 112 3.753272 ACCAGAACATACATGACAACTGC 59.247 43.478 0.00 0.00 0.00 4.40
112 113 5.240891 AGACCAGAACATACATGACAACTG 58.759 41.667 0.00 1.40 0.00 3.16
113 114 5.489792 AGACCAGAACATACATGACAACT 57.510 39.130 0.00 0.00 0.00 3.16
114 115 6.311445 CAGTAGACCAGAACATACATGACAAC 59.689 42.308 0.00 0.00 0.00 3.32
115 116 6.398095 CAGTAGACCAGAACATACATGACAA 58.602 40.000 0.00 0.00 0.00 3.18
116 117 5.624509 GCAGTAGACCAGAACATACATGACA 60.625 44.000 0.00 0.00 0.00 3.58
117 118 4.806247 GCAGTAGACCAGAACATACATGAC 59.194 45.833 0.00 0.00 0.00 3.06
118 119 4.466015 TGCAGTAGACCAGAACATACATGA 59.534 41.667 0.00 0.00 0.00 3.07
119 120 4.758688 TGCAGTAGACCAGAACATACATG 58.241 43.478 0.00 0.00 0.00 3.21
120 121 4.467795 ACTGCAGTAGACCAGAACATACAT 59.532 41.667 20.16 0.00 33.40 2.29
121 122 3.832490 ACTGCAGTAGACCAGAACATACA 59.168 43.478 20.16 0.00 33.40 2.29
122 123 4.457834 ACTGCAGTAGACCAGAACATAC 57.542 45.455 20.16 0.00 33.40 2.39
123 124 4.820897 CAACTGCAGTAGACCAGAACATA 58.179 43.478 22.01 0.00 33.40 2.29
124 125 3.668447 CAACTGCAGTAGACCAGAACAT 58.332 45.455 22.01 0.00 33.40 2.71
125 126 2.806745 GCAACTGCAGTAGACCAGAACA 60.807 50.000 22.01 0.00 41.59 3.18
126 127 1.801178 GCAACTGCAGTAGACCAGAAC 59.199 52.381 22.01 0.00 41.59 3.01
127 128 1.270839 GGCAACTGCAGTAGACCAGAA 60.271 52.381 22.01 0.00 44.36 3.02
128 129 0.321671 GGCAACTGCAGTAGACCAGA 59.678 55.000 22.01 0.00 44.36 3.86
129 130 0.035317 TGGCAACTGCAGTAGACCAG 59.965 55.000 22.01 7.33 44.36 4.00
130 131 0.692476 ATGGCAACTGCAGTAGACCA 59.308 50.000 27.80 27.80 44.36 4.02
131 132 1.089920 CATGGCAACTGCAGTAGACC 58.910 55.000 22.01 21.02 44.36 3.85
132 133 2.099141 TCATGGCAACTGCAGTAGAC 57.901 50.000 22.01 13.35 44.36 2.59
133 134 3.354948 AATCATGGCAACTGCAGTAGA 57.645 42.857 22.01 11.57 44.36 2.59
134 135 3.441222 TGAAATCATGGCAACTGCAGTAG 59.559 43.478 22.01 6.41 44.36 2.57
135 136 3.419943 TGAAATCATGGCAACTGCAGTA 58.580 40.909 22.01 4.30 44.36 2.74
136 137 2.241160 TGAAATCATGGCAACTGCAGT 58.759 42.857 15.25 15.25 44.36 4.40
137 138 3.306917 TTGAAATCATGGCAACTGCAG 57.693 42.857 13.48 13.48 44.36 4.41
138 139 3.747854 TTTGAAATCATGGCAACTGCA 57.252 38.095 3.76 0.00 44.36 4.41
139 140 4.060205 AGTTTTGAAATCATGGCAACTGC 58.940 39.130 0.00 0.00 41.14 4.40
140 141 6.607735 AAAGTTTTGAAATCATGGCAACTG 57.392 33.333 0.00 0.00 37.61 3.16
141 142 6.930722 CCTAAAGTTTTGAAATCATGGCAACT 59.069 34.615 0.00 0.00 37.61 3.16
142 143 6.928492 TCCTAAAGTTTTGAAATCATGGCAAC 59.072 34.615 0.00 0.00 0.00 4.17
143 144 7.060383 TCCTAAAGTTTTGAAATCATGGCAA 57.940 32.000 0.00 0.00 0.00 4.52
144 145 6.267471 ACTCCTAAAGTTTTGAAATCATGGCA 59.733 34.615 0.00 0.00 33.03 4.92
145 146 6.691508 ACTCCTAAAGTTTTGAAATCATGGC 58.308 36.000 0.00 0.00 33.03 4.40
146 147 7.116805 GCAACTCCTAAAGTTTTGAAATCATGG 59.883 37.037 0.00 0.00 46.26 3.66
147 148 7.116805 GGCAACTCCTAAAGTTTTGAAATCATG 59.883 37.037 0.00 0.00 46.26 3.07
148 149 7.154656 GGCAACTCCTAAAGTTTTGAAATCAT 58.845 34.615 0.00 0.00 46.26 2.45
149 150 6.097554 TGGCAACTCCTAAAGTTTTGAAATCA 59.902 34.615 0.00 0.00 46.26 2.57
150 151 6.420903 GTGGCAACTCCTAAAGTTTTGAAATC 59.579 38.462 0.00 0.00 46.26 2.17
151 152 6.280643 GTGGCAACTCCTAAAGTTTTGAAAT 58.719 36.000 0.00 0.00 46.26 2.17
152 153 5.394773 GGTGGCAACTCCTAAAGTTTTGAAA 60.395 40.000 0.00 0.00 46.26 2.69
153 154 4.098807 GGTGGCAACTCCTAAAGTTTTGAA 59.901 41.667 0.00 0.00 46.26 2.69
154 155 3.634910 GGTGGCAACTCCTAAAGTTTTGA 59.365 43.478 0.00 0.00 46.26 2.69
155 156 3.977427 GGTGGCAACTCCTAAAGTTTTG 58.023 45.455 0.00 0.00 46.26 2.44
166 167 3.679824 AGTGTTAGTAGGTGGCAACTC 57.320 47.619 9.14 0.35 37.61 3.01
167 168 3.514309 CCTAGTGTTAGTAGGTGGCAACT 59.486 47.826 11.18 11.18 36.69 3.16
168 169 3.858247 CCTAGTGTTAGTAGGTGGCAAC 58.142 50.000 0.00 0.00 36.69 4.17
169 170 2.235402 GCCTAGTGTTAGTAGGTGGCAA 59.765 50.000 10.53 0.00 42.16 4.52
170 171 1.829222 GCCTAGTGTTAGTAGGTGGCA 59.171 52.381 10.53 0.00 42.16 4.92
171 172 1.829222 TGCCTAGTGTTAGTAGGTGGC 59.171 52.381 10.53 0.00 42.16 5.01
172 173 3.097614 ACTGCCTAGTGTTAGTAGGTGG 58.902 50.000 10.53 6.92 42.16 4.61
173 174 4.495422 CAACTGCCTAGTGTTAGTAGGTG 58.505 47.826 10.53 7.20 42.16 4.00
174 175 3.056035 GCAACTGCCTAGTGTTAGTAGGT 60.056 47.826 10.53 0.00 42.16 3.08
175 176 3.522553 GCAACTGCCTAGTGTTAGTAGG 58.477 50.000 5.53 5.53 42.87 3.18
189 190 3.466836 TGTAGTGCTATATGGCAACTGC 58.533 45.455 16.02 16.95 44.18 4.40
190 191 6.435430 TTTTGTAGTGCTATATGGCAACTG 57.565 37.500 16.02 0.00 44.18 3.16
226 227 6.544564 TCTCTCTTTTACCCGAACATGTTTTT 59.455 34.615 13.36 0.24 0.00 1.94
227 228 6.059484 TCTCTCTTTTACCCGAACATGTTTT 58.941 36.000 13.36 0.60 0.00 2.43
228 229 5.617252 TCTCTCTTTTACCCGAACATGTTT 58.383 37.500 13.36 0.00 0.00 2.83
229 230 5.221661 ACTCTCTCTTTTACCCGAACATGTT 60.222 40.000 11.78 11.78 0.00 2.71
230 231 4.283722 ACTCTCTCTTTTACCCGAACATGT 59.716 41.667 0.00 0.00 0.00 3.21
231 232 4.822026 ACTCTCTCTTTTACCCGAACATG 58.178 43.478 0.00 0.00 0.00 3.21
232 233 5.238583 CAACTCTCTCTTTTACCCGAACAT 58.761 41.667 0.00 0.00 0.00 2.71
233 234 4.628074 CAACTCTCTCTTTTACCCGAACA 58.372 43.478 0.00 0.00 0.00 3.18
234 235 3.432592 GCAACTCTCTCTTTTACCCGAAC 59.567 47.826 0.00 0.00 0.00 3.95
235 236 3.660865 GCAACTCTCTCTTTTACCCGAA 58.339 45.455 0.00 0.00 0.00 4.30
236 237 2.352421 CGCAACTCTCTCTTTTACCCGA 60.352 50.000 0.00 0.00 0.00 5.14
237 238 1.993370 CGCAACTCTCTCTTTTACCCG 59.007 52.381 0.00 0.00 0.00 5.28
238 239 3.314541 TCGCAACTCTCTCTTTTACCC 57.685 47.619 0.00 0.00 0.00 3.69
239 240 4.092091 CACATCGCAACTCTCTCTTTTACC 59.908 45.833 0.00 0.00 0.00 2.85
240 241 4.434857 GCACATCGCAACTCTCTCTTTTAC 60.435 45.833 0.00 0.00 41.79 2.01
241 242 3.679980 GCACATCGCAACTCTCTCTTTTA 59.320 43.478 0.00 0.00 41.79 1.52
242 243 2.481952 GCACATCGCAACTCTCTCTTTT 59.518 45.455 0.00 0.00 41.79 2.27
243 244 2.072298 GCACATCGCAACTCTCTCTTT 58.928 47.619 0.00 0.00 41.79 2.52
244 245 1.274728 AGCACATCGCAACTCTCTCTT 59.725 47.619 0.00 0.00 46.13 2.85
245 246 0.894141 AGCACATCGCAACTCTCTCT 59.106 50.000 0.00 0.00 46.13 3.10
246 247 1.276415 GAGCACATCGCAACTCTCTC 58.724 55.000 0.00 0.00 46.13 3.20
247 248 0.605083 TGAGCACATCGCAACTCTCT 59.395 50.000 0.00 0.00 46.13 3.10
248 249 0.718343 GTGAGCACATCGCAACTCTC 59.282 55.000 0.00 0.00 46.13 3.20
249 250 0.033920 TGTGAGCACATCGCAACTCT 59.966 50.000 0.00 0.00 45.33 3.24
250 251 2.532186 TGTGAGCACATCGCAACTC 58.468 52.632 0.00 0.00 45.33 3.01
251 252 4.777384 TGTGAGCACATCGCAACT 57.223 50.000 0.00 0.00 45.33 3.16
263 264 2.103042 GCCCTAGCGTGCTTGTGAG 61.103 63.158 0.00 0.00 0.00 3.51
264 265 2.047274 GCCCTAGCGTGCTTGTGA 60.047 61.111 0.00 0.00 0.00 3.58
265 266 2.358615 TGCCCTAGCGTGCTTGTG 60.359 61.111 0.00 0.00 44.31 3.33
266 267 2.046892 CTGCCCTAGCGTGCTTGT 60.047 61.111 0.00 0.00 44.31 3.16
267 268 1.672356 AACTGCCCTAGCGTGCTTG 60.672 57.895 0.00 0.00 44.31 4.01
268 269 1.672356 CAACTGCCCTAGCGTGCTT 60.672 57.895 0.00 0.00 44.31 3.91
269 270 2.046892 CAACTGCCCTAGCGTGCT 60.047 61.111 0.00 0.00 44.31 4.40
270 271 2.852495 TAGCAACTGCCCTAGCGTGC 62.852 60.000 0.00 0.00 44.31 5.34
271 272 0.179073 ATAGCAACTGCCCTAGCGTG 60.179 55.000 0.00 0.00 44.31 5.34
272 273 0.179073 CATAGCAACTGCCCTAGCGT 60.179 55.000 0.00 0.00 44.31 5.07
273 274 0.179073 ACATAGCAACTGCCCTAGCG 60.179 55.000 0.00 0.00 44.31 4.26
274 275 2.910688 TACATAGCAACTGCCCTAGC 57.089 50.000 0.00 0.00 43.38 3.42
296 297 5.833131 TCTCCTTTACATGGCAACTCTTTTT 59.167 36.000 0.00 0.00 37.61 1.94
297 298 5.385198 TCTCCTTTACATGGCAACTCTTTT 58.615 37.500 0.00 0.00 37.61 2.27
298 299 4.985538 TCTCCTTTACATGGCAACTCTTT 58.014 39.130 0.00 0.00 37.61 2.52
299 300 4.640771 TCTCCTTTACATGGCAACTCTT 57.359 40.909 0.00 0.00 37.61 2.85
300 301 4.640771 TTCTCCTTTACATGGCAACTCT 57.359 40.909 0.00 0.00 37.61 3.24
301 302 4.379918 GCTTTCTCCTTTACATGGCAACTC 60.380 45.833 0.00 0.00 37.61 3.01
311 312 5.239525 AGTTGACATGTGCTTTCTCCTTTAC 59.760 40.000 1.15 0.00 0.00 2.01
314 315 3.817647 GAGTTGACATGTGCTTTCTCCTT 59.182 43.478 1.15 0.00 0.00 3.36
315 316 3.406764 GAGTTGACATGTGCTTTCTCCT 58.593 45.455 1.15 0.00 0.00 3.69
316 317 2.158449 CGAGTTGACATGTGCTTTCTCC 59.842 50.000 1.15 0.00 0.00 3.71
317 318 2.158449 CCGAGTTGACATGTGCTTTCTC 59.842 50.000 1.15 3.29 0.00 2.87
318 319 2.146342 CCGAGTTGACATGTGCTTTCT 58.854 47.619 1.15 0.00 0.00 2.52
319 320 1.197721 CCCGAGTTGACATGTGCTTTC 59.802 52.381 1.15 0.00 0.00 2.62
323 325 1.463444 GTTACCCGAGTTGACATGTGC 59.537 52.381 1.15 0.00 0.00 4.57
326 328 3.056821 TCTCTGTTACCCGAGTTGACATG 60.057 47.826 0.00 0.00 0.00 3.21
330 332 2.872732 ACTCTCTGTTACCCGAGTTGA 58.127 47.619 0.00 0.00 33.21 3.18
394 397 1.680735 AGTTGCCATGCGTTTCTTCAA 59.319 42.857 0.00 0.00 0.00 2.69
397 401 2.621055 TGTTAGTTGCCATGCGTTTCTT 59.379 40.909 0.00 0.00 0.00 2.52
415 419 2.133641 GCCCACACCCAAAGCTGTT 61.134 57.895 0.00 0.00 0.00 3.16
420 424 0.536460 ACGTAAGCCCACACCCAAAG 60.536 55.000 0.00 0.00 45.62 2.77
456 460 2.438021 TCCATGGTAGATGGTAACTGCC 59.562 50.000 12.58 0.00 40.06 4.85
463 467 5.772393 TGTACTTTTCCATGGTAGATGGT 57.228 39.130 12.58 7.26 40.06 3.55
476 480 2.161609 CCCGAGTTGCCATGTACTTTTC 59.838 50.000 0.00 0.00 0.00 2.29
481 485 2.004733 GTTACCCGAGTTGCCATGTAC 58.995 52.381 0.00 0.00 0.00 2.90
482 486 1.624312 TGTTACCCGAGTTGCCATGTA 59.376 47.619 0.00 0.00 0.00 2.29
511 515 5.473504 CCTAGGTTTGTTTGTAAGCAGATGT 59.526 40.000 0.00 0.00 0.00 3.06
525 529 3.036431 GCAACTGCCCTAGGTTTGT 57.964 52.632 8.29 0.00 34.31 2.83
577 581 1.606313 CCTCGCCCACACCCAAAAT 60.606 57.895 0.00 0.00 0.00 1.82
578 582 2.203422 CCTCGCCCACACCCAAAA 60.203 61.111 0.00 0.00 0.00 2.44
611 635 0.323302 TGTGGGCGCTTATCACTTCA 59.677 50.000 7.64 0.00 33.04 3.02
637 663 1.532437 CAGTTTTCACGCATGCAGAGA 59.468 47.619 19.57 11.54 0.00 3.10
644 670 1.065401 CACACACCAGTTTTCACGCAT 59.935 47.619 0.00 0.00 0.00 4.73
670 696 1.336755 GGTGTGTGGGTGTTTAGCAAG 59.663 52.381 0.00 0.00 0.00 4.01
680 706 1.692749 ACAGGACTGGTGTGTGGGT 60.693 57.895 4.14 0.00 34.19 4.51
712 738 2.029073 CAGTCGCCCACACGTCTT 59.971 61.111 0.00 0.00 28.98 3.01
713 739 3.991051 CCAGTCGCCCACACGTCT 61.991 66.667 0.00 0.00 31.63 4.18
732 758 1.705337 GGATCGTGTGTGGGCATTCG 61.705 60.000 0.00 0.00 0.00 3.34
749 775 2.812836 TATGACACGTAGGACTGGGA 57.187 50.000 0.00 0.00 0.00 4.37
786 812 1.699656 CTTCTGCACGAATCCTGGCG 61.700 60.000 0.00 0.00 0.00 5.69
814 840 2.008543 GCTCACACGCATGGATTCTCA 61.009 52.381 0.00 0.00 0.00 3.27
818 844 1.079197 TCGCTCACACGCATGGATT 60.079 52.632 0.00 0.00 0.00 3.01
855 881 2.679336 ACGGAAATATTAACGCCCACAC 59.321 45.455 10.53 0.00 0.00 3.82
884 910 6.071051 GGGAACTTTTATTCCTTGGTGCAATA 60.071 38.462 4.63 0.00 46.46 1.90
923 951 5.689383 TGTCACTTTTCTGCCATTTCTAC 57.311 39.130 0.00 0.00 0.00 2.59
973 1001 3.755628 GTGCTGCGGTCCGTCCTA 61.756 66.667 13.94 0.00 0.00 2.94
1028 1060 3.706373 GCAGGGGTCAAGGCGAGA 61.706 66.667 0.00 0.00 0.00 4.04
1066 1103 2.720144 AAAAGCTGGGGTCCTGGCTG 62.720 60.000 0.00 0.00 34.80 4.85
1067 1104 2.432174 GAAAAGCTGGGGTCCTGGCT 62.432 60.000 0.00 0.00 35.66 4.75
1072 1109 0.034960 GAGGAGAAAAGCTGGGGTCC 60.035 60.000 0.00 0.00 0.00 4.46
1075 1112 0.254462 GAGGAGGAGAAAAGCTGGGG 59.746 60.000 0.00 0.00 0.00 4.96
1711 1771 5.760253 CACACACACTGAAATTCCTAGAACT 59.240 40.000 0.00 0.00 0.00 3.01
1727 1787 2.277247 GCACGCACACACACACAC 60.277 61.111 0.00 0.00 0.00 3.82
1728 1788 3.858989 CGCACGCACACACACACA 61.859 61.111 0.00 0.00 0.00 3.72
1766 1826 2.277084 CAAACGCATACTACCACCTCC 58.723 52.381 0.00 0.00 0.00 4.30
1768 1828 2.695359 CACAAACGCATACTACCACCT 58.305 47.619 0.00 0.00 0.00 4.00
1769 1829 1.129811 GCACAAACGCATACTACCACC 59.870 52.381 0.00 0.00 0.00 4.61
1772 1833 2.864343 CCTAGCACAAACGCATACTACC 59.136 50.000 0.00 0.00 0.00 3.18
1781 1842 3.119849 CCTCAAAATCCCTAGCACAAACG 60.120 47.826 0.00 0.00 0.00 3.60
1808 1870 7.056635 CCTCAGGATTTCATATGGTTAACACT 58.943 38.462 8.10 0.00 0.00 3.55
1895 1962 5.928839 TGAACTGAAACATGTAGAGAGAAGC 59.071 40.000 0.00 0.00 0.00 3.86
1905 1972 7.714377 GGATCTCTGATATGAACTGAAACATGT 59.286 37.037 0.00 0.00 0.00 3.21
1906 1973 7.932491 AGGATCTCTGATATGAACTGAAACATG 59.068 37.037 0.00 0.00 0.00 3.21
1985 2054 7.964604 ACTGAACTACCTTCTGTAAAATGAC 57.035 36.000 0.00 0.00 38.81 3.06
2067 2136 1.967762 AAACGCGATGCAATTCAGTG 58.032 45.000 15.93 0.00 0.00 3.66
2079 2148 2.279985 TTGCACCCGTAAACGCGA 60.280 55.556 15.93 0.00 38.18 5.87
2080 2149 2.172419 CTTGCACCCGTAAACGCG 59.828 61.111 3.53 3.53 38.18 6.01
2107 2195 2.180017 CATCGCTTGCCCAGTTGC 59.820 61.111 0.00 0.00 0.00 4.17
2155 2243 0.825010 CTGCTTGAAACCAGCACCCT 60.825 55.000 0.00 0.00 34.61 4.34
2158 2246 1.251251 ATCCTGCTTGAAACCAGCAC 58.749 50.000 0.00 0.00 34.61 4.40
2180 2270 5.406780 CAGTATCCTCTCATTTATTCGGCAC 59.593 44.000 0.00 0.00 0.00 5.01
2195 2285 9.717942 ATAAAAGTTGATATCTGCAGTATCCTC 57.282 33.333 22.56 17.60 0.00 3.71
2226 2316 0.944386 GCTTGAACGCTTGTCTTGGA 59.056 50.000 0.00 0.00 0.00 3.53
2229 2319 1.668419 ACTGCTTGAACGCTTGTCTT 58.332 45.000 0.00 0.00 0.00 3.01
2238 2328 5.862924 TGCTCTAAATGTACTGCTTGAAC 57.137 39.130 0.00 0.00 0.00 3.18
2239 2329 7.307694 CAAATGCTCTAAATGTACTGCTTGAA 58.692 34.615 0.00 0.00 0.00 2.69
2258 2348 1.469251 CCAGATCAGCTGTGCAAATGC 60.469 52.381 14.67 0.00 43.33 3.56
2284 2374 3.326006 TCTGGCTGAAGATGTTCTCACTT 59.674 43.478 4.03 0.00 33.38 3.16
2347 2438 0.249447 TGTGACAAGCCAGTGAGACG 60.249 55.000 0.00 0.00 0.00 4.18
2427 2519 0.397941 CCTCACTCAGTTTCCCTGCA 59.602 55.000 0.00 0.00 41.25 4.41
2428 2520 0.398318 ACCTCACTCAGTTTCCCTGC 59.602 55.000 0.00 0.00 41.25 4.85
2429 2521 2.938956 AACCTCACTCAGTTTCCCTG 57.061 50.000 0.00 0.00 42.97 4.45
2443 2535 4.827692 ACTGAAAACCAAACCAAAACCTC 58.172 39.130 0.00 0.00 0.00 3.85
2447 2539 8.482128 AGATATCAACTGAAAACCAAACCAAAA 58.518 29.630 5.32 0.00 0.00 2.44
2473 2565 2.733218 CGCTGCGTTCCGAACTCA 60.733 61.111 14.93 6.73 0.00 3.41
2475 2567 3.802418 AACCGCTGCGTTCCGAACT 62.802 57.895 21.59 0.00 0.00 3.01
2503 2595 4.909880 GTCTTCAGTAAAATGTCCGCAAAC 59.090 41.667 0.00 0.00 0.00 2.93
2544 2636 1.445582 GCGGAAACTCGGTGTCGAT 60.446 57.895 0.00 0.00 45.04 3.59
2569 2661 6.157904 TGCACCAATGTATAATGCATAATGC 58.842 36.000 0.00 0.00 41.18 3.56
2581 2673 3.156293 TCACAAGCTTGCACCAATGTAT 58.844 40.909 26.27 0.00 0.00 2.29
2582 2674 2.580962 TCACAAGCTTGCACCAATGTA 58.419 42.857 26.27 3.92 0.00 2.29
2601 2724 4.554723 GCCACTAACATATCGGTTGCATTC 60.555 45.833 0.00 0.00 32.29 2.67
2609 2795 0.320421 CCGGGCCACTAACATATCGG 60.320 60.000 4.39 0.00 0.00 4.18
2617 2803 1.858739 ATCTTTGCCCGGGCCACTAA 61.859 55.000 41.75 26.81 41.09 2.24
2624 2810 1.103398 CCTTGCTATCTTTGCCCGGG 61.103 60.000 19.09 19.09 0.00 5.73
2765 2951 8.370940 TGGCTGGAGATATTCTTATTCTTACAG 58.629 37.037 0.00 0.00 0.00 2.74
2799 2985 5.164620 TCAGGATGCAGTGTTTCAGAATA 57.835 39.130 0.00 0.00 34.76 1.75
2840 3026 4.545823 TTTACAGGCAAAGTCAGAAACG 57.454 40.909 0.00 0.00 0.00 3.60
2861 3047 5.796424 ACCAAAATTTGATGAGCACTCTT 57.204 34.783 7.37 0.00 0.00 2.85
2864 3050 5.163426 TGACAACCAAAATTTGATGAGCACT 60.163 36.000 7.37 0.00 0.00 4.40
2865 3051 5.049167 TGACAACCAAAATTTGATGAGCAC 58.951 37.500 7.37 2.93 0.00 4.40
2868 3054 8.597662 AAAGATGACAACCAAAATTTGATGAG 57.402 30.769 7.37 0.00 0.00 2.90
2885 3071 7.367285 TGGTTTGTAATTGCTGTAAAGATGAC 58.633 34.615 0.00 0.00 0.00 3.06
2903 3092 9.679661 ATTTTCTGAATTTTAGGTTTGGTTTGT 57.320 25.926 0.00 0.00 0.00 2.83
2915 3104 6.757237 TCAGGCTGCAATTTTCTGAATTTTA 58.243 32.000 10.34 0.00 32.36 1.52
2929 3118 2.291465 GCGATTCATATTCAGGCTGCAA 59.709 45.455 10.34 5.74 0.00 4.08
2931 3120 1.875514 TGCGATTCATATTCAGGCTGC 59.124 47.619 10.34 0.00 0.00 5.25
2932 3121 3.136763 ACTGCGATTCATATTCAGGCTG 58.863 45.455 8.58 8.58 0.00 4.85
2933 3122 3.070734 AGACTGCGATTCATATTCAGGCT 59.929 43.478 0.00 0.00 38.24 4.58
2934 3123 3.397482 AGACTGCGATTCATATTCAGGC 58.603 45.455 0.00 0.00 33.14 4.85
2935 3124 4.447054 GTGAGACTGCGATTCATATTCAGG 59.553 45.833 0.00 0.00 0.00 3.86
2967 3157 2.593346 AATTTTGCGAACAACCTGCA 57.407 40.000 0.00 0.00 34.87 4.41
3121 3321 3.379372 TCCCTCGGTTTCAGAATACGTAG 59.621 47.826 0.08 0.00 0.00 3.51
3124 3324 2.165845 ACTCCCTCGGTTTCAGAATACG 59.834 50.000 1.60 1.60 0.00 3.06
3125 3325 3.889520 ACTCCCTCGGTTTCAGAATAC 57.110 47.619 0.00 0.00 0.00 1.89
3126 3326 4.346730 TGTACTCCCTCGGTTTCAGAATA 58.653 43.478 0.00 0.00 0.00 1.75
3128 3328 2.600790 TGTACTCCCTCGGTTTCAGAA 58.399 47.619 0.00 0.00 0.00 3.02
3129 3329 2.297698 TGTACTCCCTCGGTTTCAGA 57.702 50.000 0.00 0.00 0.00 3.27
3130 3330 3.262420 CAATGTACTCCCTCGGTTTCAG 58.738 50.000 0.00 0.00 0.00 3.02
3131 3331 2.614481 GCAATGTACTCCCTCGGTTTCA 60.614 50.000 0.00 0.00 0.00 2.69
3132 3332 2.007608 GCAATGTACTCCCTCGGTTTC 58.992 52.381 0.00 0.00 0.00 2.78
3133 3333 1.349688 TGCAATGTACTCCCTCGGTTT 59.650 47.619 0.00 0.00 0.00 3.27
3167 3387 3.578282 CCAAACCAAGCCCTAACTCATTT 59.422 43.478 0.00 0.00 0.00 2.32
3169 3389 2.110011 ACCAAACCAAGCCCTAACTCAT 59.890 45.455 0.00 0.00 0.00 2.90
3170 3390 1.497286 ACCAAACCAAGCCCTAACTCA 59.503 47.619 0.00 0.00 0.00 3.41
3171 3391 2.287977 ACCAAACCAAGCCCTAACTC 57.712 50.000 0.00 0.00 0.00 3.01
3182 3402 6.339587 GGATATCAACTGAAAACCAAACCA 57.660 37.500 4.83 0.00 0.00 3.67



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.