Multiple sequence alignment - TraesCS6B01G168900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G168900 chr6B 100.000 3251 0 0 1 3251 179470996 179467746 0.000000e+00 6004.0
1 TraesCS6B01G168900 chr6B 83.765 1466 210 16 965 2422 169236587 169235142 0.000000e+00 1363.0
2 TraesCS6B01G168900 chr6B 98.601 286 4 0 554 839 637877485 637877770 1.040000e-139 507.0
3 TraesCS6B01G168900 chr6D 91.483 2313 154 27 958 3251 93524698 93526986 0.000000e+00 3140.0
4 TraesCS6B01G168900 chr6D 85.745 1396 178 10 952 2340 88892107 88890726 0.000000e+00 1456.0
5 TraesCS6B01G168900 chr6D 78.173 1292 238 27 1052 2319 88837036 88835765 0.000000e+00 784.0
6 TraesCS6B01G168900 chr6D 91.866 418 22 5 1 411 93519905 93520317 1.010000e-159 573.0
7 TraesCS6B01G168900 chr6D 80.656 305 57 2 1055 1358 31479751 31480054 5.420000e-58 235.0
8 TraesCS6B01G168900 chr6D 90.909 143 11 2 419 561 93524465 93524605 1.190000e-44 191.0
9 TraesCS6B01G168900 chr6D 87.000 100 11 2 128 227 31813821 31813918 9.530000e-21 111.0
10 TraesCS6B01G168900 chr6D 87.671 73 7 2 836 908 93524605 93524675 2.080000e-12 84.2
11 TraesCS6B01G168900 chr6A 91.068 1489 111 14 856 2330 115281462 115279982 0.000000e+00 1993.0
12 TraesCS6B01G168900 chr6A 85.246 1403 185 11 944 2337 106986319 106984930 0.000000e+00 1424.0
13 TraesCS6B01G168900 chr6A 78.381 1272 235 25 1055 2308 106895376 106894127 0.000000e+00 789.0
14 TraesCS6B01G168900 chr6A 88.834 609 49 11 2534 3126 115279965 115279360 0.000000e+00 730.0
15 TraesCS6B01G168900 chr6A 99.286 280 2 0 559 838 153681188 153681467 1.040000e-139 507.0
16 TraesCS6B01G168900 chr6A 86.721 369 43 5 154 519 115281838 115281473 3.910000e-109 405.0
17 TraesCS6B01G168900 chr6A 76.386 487 91 18 1026 1506 31745481 31745013 1.170000e-59 241.0
18 TraesCS6B01G168900 chr5A 98.951 286 2 1 560 845 34705556 34705272 8.050000e-141 510.0
19 TraesCS6B01G168900 chr3B 99.642 279 1 0 560 838 663556424 663556702 8.050000e-141 510.0
20 TraesCS6B01G168900 chr3B 85.714 98 14 0 119 216 770549656 770549753 1.600000e-18 104.0
21 TraesCS6B01G168900 chr3B 81.579 114 20 1 116 229 769385013 769385125 3.450000e-15 93.5
22 TraesCS6B01G168900 chr3B 81.905 105 18 1 113 217 769477166 769477269 1.610000e-13 87.9
23 TraesCS6B01G168900 chr3B 83.582 67 10 1 121 187 769599140 769599205 9.740000e-06 62.1
24 TraesCS6B01G168900 chr1B 99.642 279 1 0 560 838 615614870 615614592 8.050000e-141 510.0
25 TraesCS6B01G168900 chr2B 98.944 284 3 0 560 843 86540867 86540584 2.890000e-140 508.0
26 TraesCS6B01G168900 chr4A 98.606 287 2 2 559 844 615030147 615029862 1.040000e-139 507.0
27 TraesCS6B01G168900 chr1A 99.286 280 2 0 560 839 342385967 342386246 1.040000e-139 507.0
28 TraesCS6B01G168900 chr7A 97.288 295 5 2 560 851 529331794 529331500 6.260000e-137 497.0
29 TraesCS6B01G168900 chr3A 77.966 354 70 6 998 1350 22247639 22247985 7.060000e-52 215.0
30 TraesCS6B01G168900 chr5D 90.769 65 6 0 2164 2228 432805618 432805554 1.610000e-13 87.9
31 TraesCS6B01G168900 chr5D 91.379 58 5 0 2176 2233 432984377 432984434 2.690000e-11 80.5
32 TraesCS6B01G168900 chr5D 80.645 93 13 4 2168 2257 432996455 432996545 2.090000e-07 67.6
33 TraesCS6B01G168900 chr5B 91.379 58 5 0 2176 2233 526270767 526270824 2.690000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G168900 chr6B 179467746 179470996 3250 True 6004.000000 6004 100.000000 1 3251 1 chr6B.!!$R2 3250
1 TraesCS6B01G168900 chr6B 169235142 169236587 1445 True 1363.000000 1363 83.765000 965 2422 1 chr6B.!!$R1 1457
2 TraesCS6B01G168900 chr6D 88890726 88892107 1381 True 1456.000000 1456 85.745000 952 2340 1 chr6D.!!$R2 1388
3 TraesCS6B01G168900 chr6D 93524465 93526986 2521 False 1138.400000 3140 90.021000 419 3251 3 chr6D.!!$F4 2832
4 TraesCS6B01G168900 chr6D 88835765 88837036 1271 True 784.000000 784 78.173000 1052 2319 1 chr6D.!!$R1 1267
5 TraesCS6B01G168900 chr6A 106984930 106986319 1389 True 1424.000000 1424 85.246000 944 2337 1 chr6A.!!$R3 1393
6 TraesCS6B01G168900 chr6A 115279360 115281838 2478 True 1042.666667 1993 88.874333 154 3126 3 chr6A.!!$R4 2972
7 TraesCS6B01G168900 chr6A 106894127 106895376 1249 True 789.000000 789 78.381000 1055 2308 1 chr6A.!!$R2 1253

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
127 128 0.039074 CAGCTTGAAGGACGAGACGT 60.039 55.0 0.0 0.0 45.1 4.34 F
1714 1743 0.033504 TGAGGACGAACACTGGCTTC 59.966 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1717 1746 1.066716 CCCATTCACCATTGTGCCAAG 60.067 52.381 0.0 0.0 42.46 3.61 R
2614 2666 2.159028 GGAATCTCGGTCTCAAAGGAGG 60.159 54.545 0.0 0.0 41.69 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 9.985730 ATTGTTCTACAATGTGAATTGTGAATT 57.014 25.926 13.04 0.00 46.18 2.17
79 80 9.462174 TTGTTCTACAATGTGAATTGTGAATTC 57.538 29.630 13.04 0.00 43.79 2.17
118 119 7.383102 ACAATACAAACTATCAGCTTGAAGG 57.617 36.000 0.00 0.00 0.00 3.46
119 120 7.168219 ACAATACAAACTATCAGCTTGAAGGA 58.832 34.615 0.00 0.00 0.00 3.36
120 121 7.119846 ACAATACAAACTATCAGCTTGAAGGAC 59.880 37.037 0.00 0.00 0.00 3.85
121 122 3.997021 ACAAACTATCAGCTTGAAGGACG 59.003 43.478 0.00 0.00 0.00 4.79
122 123 4.245660 CAAACTATCAGCTTGAAGGACGA 58.754 43.478 0.00 0.00 0.00 4.20
123 124 3.791973 ACTATCAGCTTGAAGGACGAG 57.208 47.619 0.00 0.00 0.00 4.18
124 125 3.357203 ACTATCAGCTTGAAGGACGAGA 58.643 45.455 0.00 0.00 31.94 4.04
125 126 2.663826 ATCAGCTTGAAGGACGAGAC 57.336 50.000 0.00 0.00 31.94 3.36
126 127 0.241213 TCAGCTTGAAGGACGAGACG 59.759 55.000 0.00 0.00 31.94 4.18
127 128 0.039074 CAGCTTGAAGGACGAGACGT 60.039 55.000 0.00 0.00 45.10 4.34
128 129 0.039074 AGCTTGAAGGACGAGACGTG 60.039 55.000 0.00 0.00 41.37 4.49
129 130 1.009389 GCTTGAAGGACGAGACGTGG 61.009 60.000 0.00 0.00 41.37 4.94
130 131 1.006571 TTGAAGGACGAGACGTGGC 60.007 57.895 0.00 0.00 41.37 5.01
131 132 1.461091 TTGAAGGACGAGACGTGGCT 61.461 55.000 0.00 0.00 41.37 4.75
132 133 1.153997 GAAGGACGAGACGTGGCTC 60.154 63.158 0.00 0.00 41.37 4.70
138 139 2.885861 GAGACGTGGCTCGATGGT 59.114 61.111 16.57 0.00 42.86 3.55
139 140 1.215647 GAGACGTGGCTCGATGGTT 59.784 57.895 16.57 0.00 42.86 3.67
140 141 1.078759 GAGACGTGGCTCGATGGTTG 61.079 60.000 16.57 0.00 42.86 3.77
141 142 2.047274 ACGTGGCTCGATGGTTGG 60.047 61.111 16.57 0.00 42.86 3.77
142 143 2.819595 CGTGGCTCGATGGTTGGG 60.820 66.667 2.21 0.00 42.86 4.12
143 144 2.438434 GTGGCTCGATGGTTGGGG 60.438 66.667 0.00 0.00 0.00 4.96
144 145 2.933287 TGGCTCGATGGTTGGGGT 60.933 61.111 0.00 0.00 0.00 4.95
145 146 2.355115 GGCTCGATGGTTGGGGTT 59.645 61.111 0.00 0.00 0.00 4.11
146 147 2.046285 GGCTCGATGGTTGGGGTTG 61.046 63.158 0.00 0.00 0.00 3.77
147 148 2.046285 GCTCGATGGTTGGGGTTGG 61.046 63.158 0.00 0.00 0.00 3.77
148 149 2.034999 TCGATGGTTGGGGTTGGC 59.965 61.111 0.00 0.00 0.00 4.52
149 150 2.282816 CGATGGTTGGGGTTGGCA 60.283 61.111 0.00 0.00 0.00 4.92
150 151 2.342650 CGATGGTTGGGGTTGGCAG 61.343 63.158 0.00 0.00 0.00 4.85
151 152 1.228862 GATGGTTGGGGTTGGCAGT 60.229 57.895 0.00 0.00 0.00 4.40
152 153 1.533753 ATGGTTGGGGTTGGCAGTG 60.534 57.895 0.00 0.00 0.00 3.66
179 180 2.031163 CCCGCCCAAGATCGATCC 59.969 66.667 21.66 5.21 0.00 3.36
180 181 2.031163 CCGCCCAAGATCGATCCC 59.969 66.667 21.66 0.00 0.00 3.85
182 183 1.185618 CCGCCCAAGATCGATCCCTA 61.186 60.000 21.66 0.00 0.00 3.53
194 195 3.037941 ATCCCTAGGATCGACGTGG 57.962 57.895 11.48 0.00 38.09 4.94
198 199 1.035932 CCTAGGATCGACGTGGGTGT 61.036 60.000 1.05 0.00 31.81 4.16
204 205 0.894184 ATCGACGTGGGTGTCTCACT 60.894 55.000 0.00 0.00 36.71 3.41
207 208 0.600255 GACGTGGGTGTCTCACTTGG 60.600 60.000 0.00 0.00 35.95 3.61
208 209 1.301716 CGTGGGTGTCTCACTTGGG 60.302 63.158 0.00 0.00 34.40 4.12
209 210 1.073199 GTGGGTGTCTCACTTGGGG 59.927 63.158 0.06 0.00 34.40 4.96
215 216 3.499745 GGGTGTCTCACTTGGGGTATTTT 60.500 47.826 0.06 0.00 34.40 1.82
218 219 3.245122 TGTCTCACTTGGGGTATTTTCCC 60.245 47.826 0.00 0.00 46.31 3.97
230 231 2.990740 ATTTTCCCCTTGCAGGTACA 57.009 45.000 0.00 0.00 31.93 2.90
237 238 1.271325 CCCTTGCAGGTACATCACACA 60.271 52.381 0.00 0.00 31.93 3.72
247 248 3.066900 GGTACATCACACATCTACGAGCT 59.933 47.826 0.00 0.00 0.00 4.09
256 257 3.003378 CACATCTACGAGCTATTCACGGA 59.997 47.826 0.00 0.00 32.98 4.69
265 266 2.766263 AGCTATTCACGGAGTTGGATGA 59.234 45.455 0.00 0.00 41.61 2.92
273 274 1.067142 CGGAGTTGGATGACTTCGGAA 60.067 52.381 0.00 0.00 43.35 4.30
280 281 4.351874 TGGATGACTTCGGAAGTTTCTT 57.648 40.909 23.17 10.50 43.03 2.52
285 286 6.091034 GGATGACTTCGGAAGTTTCTTAAGAC 59.909 42.308 23.17 8.78 43.03 3.01
286 287 4.980434 TGACTTCGGAAGTTTCTTAAGACG 59.020 41.667 23.17 4.64 43.03 4.18
295 296 3.428870 AGTTTCTTAAGACGTGTCGCATG 59.571 43.478 4.18 0.00 34.09 4.06
330 331 5.528043 AGATCTTGGTAGACACATAGCAG 57.472 43.478 0.00 0.00 34.84 4.24
333 334 3.195610 TCTTGGTAGACACATAGCAGGTG 59.804 47.826 1.47 1.47 41.95 4.00
344 345 2.851263 TAGCAGGTGTGTTTAGTGGG 57.149 50.000 0.00 0.00 0.00 4.61
380 381 1.871789 GTGTTGTGTGTTGTGCGCC 60.872 57.895 4.18 0.00 0.00 6.53
385 386 2.439338 TGTGTTGTGCGCCTGGTT 60.439 55.556 4.18 0.00 0.00 3.67
386 387 1.153147 TGTGTTGTGCGCCTGGTTA 60.153 52.632 4.18 0.00 0.00 2.85
387 388 0.536233 TGTGTTGTGCGCCTGGTTAT 60.536 50.000 4.18 0.00 0.00 1.89
388 389 0.109781 GTGTTGTGCGCCTGGTTATG 60.110 55.000 4.18 0.00 0.00 1.90
389 390 0.250510 TGTTGTGCGCCTGGTTATGA 60.251 50.000 4.18 0.00 0.00 2.15
398 400 3.679083 GCGCCTGGTTATGACCTATATCC 60.679 52.174 8.31 0.00 46.66 2.59
456 458 9.567848 TTTCAACTCAAAAACATGTCTAAGTTC 57.432 29.630 0.00 0.00 0.00 3.01
545 547 0.961857 TCTAACGGTGAGCACGGCTA 60.962 55.000 7.92 0.64 39.88 3.93
548 550 2.202623 CGGTGAGCACGGCTAGAC 60.203 66.667 0.00 0.00 39.88 2.59
560 562 1.522569 GCTAGACCGTGCTCCCATT 59.477 57.895 0.00 0.00 0.00 3.16
561 563 0.750850 GCTAGACCGTGCTCCCATTA 59.249 55.000 0.00 0.00 0.00 1.90
562 564 1.269831 GCTAGACCGTGCTCCCATTAG 60.270 57.143 0.00 0.00 0.00 1.73
563 565 1.341531 CTAGACCGTGCTCCCATTAGG 59.658 57.143 0.00 0.00 0.00 2.69
564 566 1.523938 GACCGTGCTCCCATTAGGC 60.524 63.158 0.00 0.00 34.51 3.93
565 567 1.972660 GACCGTGCTCCCATTAGGCT 61.973 60.000 0.00 0.00 34.51 4.58
566 568 1.524621 CCGTGCTCCCATTAGGCTG 60.525 63.158 0.00 0.00 34.51 4.85
567 569 1.524621 CGTGCTCCCATTAGGCTGG 60.525 63.158 0.00 0.00 35.95 4.85
568 570 1.609783 GTGCTCCCATTAGGCTGGT 59.390 57.895 0.00 0.00 34.23 4.00
569 571 0.464554 GTGCTCCCATTAGGCTGGTC 60.465 60.000 0.00 0.00 34.23 4.02
570 572 0.913934 TGCTCCCATTAGGCTGGTCA 60.914 55.000 0.00 0.00 34.23 4.02
571 573 0.475906 GCTCCCATTAGGCTGGTCAT 59.524 55.000 0.00 0.00 34.23 3.06
572 574 1.699634 GCTCCCATTAGGCTGGTCATA 59.300 52.381 0.00 0.00 34.23 2.15
573 575 2.289945 GCTCCCATTAGGCTGGTCATAG 60.290 54.545 0.00 0.00 34.23 2.23
574 576 2.975489 CTCCCATTAGGCTGGTCATAGT 59.025 50.000 0.00 0.00 34.23 2.12
575 577 2.705658 TCCCATTAGGCTGGTCATAGTG 59.294 50.000 0.00 0.00 34.23 2.74
576 578 2.224621 CCCATTAGGCTGGTCATAGTGG 60.225 54.545 0.00 0.00 38.20 4.00
577 579 2.705658 CCATTAGGCTGGTCATAGTGGA 59.294 50.000 0.00 0.00 40.08 4.02
578 580 3.244353 CCATTAGGCTGGTCATAGTGGAG 60.244 52.174 0.00 0.00 40.08 3.86
579 581 3.398318 TTAGGCTGGTCATAGTGGAGA 57.602 47.619 0.00 0.00 0.00 3.71
580 582 1.786937 AGGCTGGTCATAGTGGAGAG 58.213 55.000 0.00 0.00 0.00 3.20
581 583 1.007721 AGGCTGGTCATAGTGGAGAGT 59.992 52.381 0.00 0.00 0.00 3.24
582 584 2.245028 AGGCTGGTCATAGTGGAGAGTA 59.755 50.000 0.00 0.00 0.00 2.59
583 585 3.031736 GGCTGGTCATAGTGGAGAGTAA 58.968 50.000 0.00 0.00 0.00 2.24
584 586 3.181474 GGCTGGTCATAGTGGAGAGTAAC 60.181 52.174 0.00 0.00 0.00 2.50
585 587 3.702045 GCTGGTCATAGTGGAGAGTAACT 59.298 47.826 0.00 0.00 0.00 2.24
586 588 4.160626 GCTGGTCATAGTGGAGAGTAACTT 59.839 45.833 0.00 0.00 0.00 2.66
587 589 5.360144 GCTGGTCATAGTGGAGAGTAACTTA 59.640 44.000 0.00 0.00 0.00 2.24
588 590 6.460399 GCTGGTCATAGTGGAGAGTAACTTAG 60.460 46.154 0.00 0.00 0.00 2.18
589 591 6.728411 TGGTCATAGTGGAGAGTAACTTAGA 58.272 40.000 0.00 0.00 0.00 2.10
590 592 6.602406 TGGTCATAGTGGAGAGTAACTTAGAC 59.398 42.308 0.00 0.00 32.58 2.59
591 593 6.829811 GGTCATAGTGGAGAGTAACTTAGACT 59.170 42.308 0.00 0.00 33.27 3.24
592 594 7.992033 GGTCATAGTGGAGAGTAACTTAGACTA 59.008 40.741 0.00 0.00 33.27 2.59
593 595 9.048446 GTCATAGTGGAGAGTAACTTAGACTAG 57.952 40.741 0.00 0.00 31.58 2.57
594 596 8.770322 TCATAGTGGAGAGTAACTTAGACTAGT 58.230 37.037 0.00 0.00 0.00 2.57
597 599 8.791327 AGTGGAGAGTAACTTAGACTAGTAAC 57.209 38.462 0.00 0.00 0.00 2.50
598 600 8.381636 AGTGGAGAGTAACTTAGACTAGTAACA 58.618 37.037 0.00 0.00 0.00 2.41
599 601 9.176460 GTGGAGAGTAACTTAGACTAGTAACAT 57.824 37.037 0.00 0.00 0.00 2.71
631 633 9.964354 TGTTACTAGTCTATGTTACTACCTTCA 57.036 33.333 0.00 0.00 0.00 3.02
637 639 8.466617 AGTCTATGTTACTACCTTCATAGTGG 57.533 38.462 0.00 0.00 40.01 4.00
638 640 7.506261 AGTCTATGTTACTACCTTCATAGTGGG 59.494 40.741 0.00 0.00 40.01 4.61
639 641 7.287235 GTCTATGTTACTACCTTCATAGTGGGT 59.713 40.741 0.00 0.00 40.01 4.51
640 642 8.505246 TCTATGTTACTACCTTCATAGTGGGTA 58.495 37.037 0.00 0.00 40.01 3.69
645 647 5.517322 CTACCTTCATAGTGGGTAGTGTC 57.483 47.826 9.46 0.00 44.30 3.67
646 648 3.786553 ACCTTCATAGTGGGTAGTGTCA 58.213 45.455 0.00 0.00 0.00 3.58
647 649 4.362677 ACCTTCATAGTGGGTAGTGTCAT 58.637 43.478 0.00 0.00 0.00 3.06
648 650 5.525484 ACCTTCATAGTGGGTAGTGTCATA 58.475 41.667 0.00 0.00 0.00 2.15
649 651 5.598830 ACCTTCATAGTGGGTAGTGTCATAG 59.401 44.000 0.00 0.00 0.00 2.23
650 652 5.011125 CCTTCATAGTGGGTAGTGTCATAGG 59.989 48.000 0.00 0.00 0.00 2.57
651 653 5.138758 TCATAGTGGGTAGTGTCATAGGT 57.861 43.478 0.00 0.00 0.00 3.08
652 654 4.893524 TCATAGTGGGTAGTGTCATAGGTG 59.106 45.833 0.00 0.00 0.00 4.00
653 655 3.185880 AGTGGGTAGTGTCATAGGTGT 57.814 47.619 0.00 0.00 0.00 4.16
654 656 2.832129 AGTGGGTAGTGTCATAGGTGTG 59.168 50.000 0.00 0.00 0.00 3.82
655 657 2.093658 GTGGGTAGTGTCATAGGTGTGG 60.094 54.545 0.00 0.00 0.00 4.17
656 658 2.185387 GGGTAGTGTCATAGGTGTGGT 58.815 52.381 0.00 0.00 0.00 4.16
657 659 3.245694 TGGGTAGTGTCATAGGTGTGGTA 60.246 47.826 0.00 0.00 0.00 3.25
658 660 3.770933 GGGTAGTGTCATAGGTGTGGTAA 59.229 47.826 0.00 0.00 0.00 2.85
659 661 4.382362 GGGTAGTGTCATAGGTGTGGTAAC 60.382 50.000 0.00 0.00 0.00 2.50
678 680 8.588290 TGGTAACATAGTTGCCTTCATTTATT 57.412 30.769 16.08 0.00 46.17 1.40
679 681 9.688091 TGGTAACATAGTTGCCTTCATTTATTA 57.312 29.630 16.08 0.00 46.17 0.98
680 682 9.946165 GGTAACATAGTTGCCTTCATTTATTAC 57.054 33.333 9.36 0.00 0.00 1.89
688 690 9.515226 AGTTGCCTTCATTTATTACTTTGTAGA 57.485 29.630 0.00 0.00 0.00 2.59
689 691 9.556030 GTTGCCTTCATTTATTACTTTGTAGAC 57.444 33.333 0.00 0.00 0.00 2.59
690 692 9.515226 TTGCCTTCATTTATTACTTTGTAGACT 57.485 29.630 0.00 0.00 0.00 3.24
691 693 9.162764 TGCCTTCATTTATTACTTTGTAGACTC 57.837 33.333 0.00 0.00 0.00 3.36
692 694 9.162764 GCCTTCATTTATTACTTTGTAGACTCA 57.837 33.333 0.00 0.00 0.00 3.41
703 705 7.325660 ACTTTGTAGACTCATTATGCATTGG 57.674 36.000 3.54 0.00 0.00 3.16
704 706 7.112122 ACTTTGTAGACTCATTATGCATTGGA 58.888 34.615 3.54 0.00 0.00 3.53
705 707 7.611467 ACTTTGTAGACTCATTATGCATTGGAA 59.389 33.333 3.54 0.00 0.00 3.53
706 708 7.936496 TTGTAGACTCATTATGCATTGGAAA 57.064 32.000 3.54 0.00 0.00 3.13
707 709 7.320443 TGTAGACTCATTATGCATTGGAAAC 57.680 36.000 3.54 0.00 0.00 2.78
708 710 5.841957 AGACTCATTATGCATTGGAAACC 57.158 39.130 3.54 0.00 0.00 3.27
709 711 4.336433 AGACTCATTATGCATTGGAAACCG 59.664 41.667 3.54 0.00 0.00 4.44
710 712 3.181487 ACTCATTATGCATTGGAAACCGC 60.181 43.478 3.54 0.00 0.00 5.68
711 713 3.023119 TCATTATGCATTGGAAACCGCT 58.977 40.909 3.54 0.00 0.00 5.52
712 714 4.203226 TCATTATGCATTGGAAACCGCTA 58.797 39.130 3.54 0.00 0.00 4.26
713 715 4.826733 TCATTATGCATTGGAAACCGCTAT 59.173 37.500 3.54 0.00 0.00 2.97
714 716 4.566545 TTATGCATTGGAAACCGCTATG 57.433 40.909 3.54 0.00 0.00 2.23
715 717 1.832883 TGCATTGGAAACCGCTATGT 58.167 45.000 0.00 0.00 0.00 2.29
716 718 1.472082 TGCATTGGAAACCGCTATGTG 59.528 47.619 0.00 0.00 0.00 3.21
717 719 1.742831 GCATTGGAAACCGCTATGTGA 59.257 47.619 0.00 0.00 0.00 3.58
718 720 2.358898 GCATTGGAAACCGCTATGTGAT 59.641 45.455 0.00 0.00 0.00 3.06
719 721 3.793129 GCATTGGAAACCGCTATGTGATG 60.793 47.826 0.00 0.00 0.00 3.07
720 722 2.036958 TGGAAACCGCTATGTGATGG 57.963 50.000 0.00 0.00 0.00 3.51
721 723 1.280710 TGGAAACCGCTATGTGATGGT 59.719 47.619 0.00 0.00 35.90 3.55
722 724 2.502130 TGGAAACCGCTATGTGATGGTA 59.498 45.455 0.00 0.00 33.45 3.25
723 725 3.055021 TGGAAACCGCTATGTGATGGTAA 60.055 43.478 0.00 0.00 33.45 2.85
724 726 3.311596 GGAAACCGCTATGTGATGGTAAC 59.688 47.826 0.00 0.00 33.45 2.50
753 755 9.771534 ATTATGTTACTCTATTTGCCTCTCTTC 57.228 33.333 0.00 0.00 0.00 2.87
754 756 6.859112 TGTTACTCTATTTGCCTCTCTTCT 57.141 37.500 0.00 0.00 0.00 2.85
755 757 6.868622 TGTTACTCTATTTGCCTCTCTTCTC 58.131 40.000 0.00 0.00 0.00 2.87
756 758 6.437477 TGTTACTCTATTTGCCTCTCTTCTCA 59.563 38.462 0.00 0.00 0.00 3.27
757 759 7.124901 TGTTACTCTATTTGCCTCTCTTCTCAT 59.875 37.037 0.00 0.00 0.00 2.90
758 760 6.558488 ACTCTATTTGCCTCTCTTCTCATT 57.442 37.500 0.00 0.00 0.00 2.57
759 761 7.667575 ACTCTATTTGCCTCTCTTCTCATTA 57.332 36.000 0.00 0.00 0.00 1.90
760 762 8.083828 ACTCTATTTGCCTCTCTTCTCATTAA 57.916 34.615 0.00 0.00 0.00 1.40
761 763 7.984617 ACTCTATTTGCCTCTCTTCTCATTAAC 59.015 37.037 0.00 0.00 0.00 2.01
762 764 8.083828 TCTATTTGCCTCTCTTCTCATTAACT 57.916 34.615 0.00 0.00 0.00 2.24
763 765 9.201989 TCTATTTGCCTCTCTTCTCATTAACTA 57.798 33.333 0.00 0.00 0.00 2.24
764 766 9.255304 CTATTTGCCTCTCTTCTCATTAACTAC 57.745 37.037 0.00 0.00 0.00 2.73
765 767 6.859112 TTGCCTCTCTTCTCATTAACTACT 57.141 37.500 0.00 0.00 0.00 2.57
766 768 6.859112 TGCCTCTCTTCTCATTAACTACTT 57.141 37.500 0.00 0.00 0.00 2.24
767 769 6.634805 TGCCTCTCTTCTCATTAACTACTTG 58.365 40.000 0.00 0.00 0.00 3.16
768 770 5.522097 GCCTCTCTTCTCATTAACTACTTGC 59.478 44.000 0.00 0.00 0.00 4.01
769 771 6.045955 CCTCTCTTCTCATTAACTACTTGCC 58.954 44.000 0.00 0.00 0.00 4.52
770 772 6.351371 CCTCTCTTCTCATTAACTACTTGCCA 60.351 42.308 0.00 0.00 0.00 4.92
771 773 6.398918 TCTCTTCTCATTAACTACTTGCCAC 58.601 40.000 0.00 0.00 0.00 5.01
772 774 6.014584 TCTCTTCTCATTAACTACTTGCCACA 60.015 38.462 0.00 0.00 0.00 4.17
773 775 6.711277 TCTTCTCATTAACTACTTGCCACAT 58.289 36.000 0.00 0.00 0.00 3.21
774 776 6.818644 TCTTCTCATTAACTACTTGCCACATC 59.181 38.462 0.00 0.00 0.00 3.06
775 777 6.048732 TCTCATTAACTACTTGCCACATCA 57.951 37.500 0.00 0.00 0.00 3.07
776 778 5.874810 TCTCATTAACTACTTGCCACATCAC 59.125 40.000 0.00 0.00 0.00 3.06
777 779 4.941263 TCATTAACTACTTGCCACATCACC 59.059 41.667 0.00 0.00 0.00 4.02
778 780 2.949177 AACTACTTGCCACATCACCA 57.051 45.000 0.00 0.00 0.00 4.17
779 781 2.949177 ACTACTTGCCACATCACCAA 57.051 45.000 0.00 0.00 0.00 3.67
780 782 3.439857 ACTACTTGCCACATCACCAAT 57.560 42.857 0.00 0.00 0.00 3.16
781 783 3.766545 ACTACTTGCCACATCACCAATT 58.233 40.909 0.00 0.00 0.00 2.32
782 784 4.151883 ACTACTTGCCACATCACCAATTT 58.848 39.130 0.00 0.00 0.00 1.82
783 785 4.588528 ACTACTTGCCACATCACCAATTTT 59.411 37.500 0.00 0.00 0.00 1.82
784 786 3.731089 ACTTGCCACATCACCAATTTTG 58.269 40.909 0.00 0.00 0.00 2.44
785 787 2.166821 TGCCACATCACCAATTTTGC 57.833 45.000 0.00 0.00 0.00 3.68
786 788 1.693062 TGCCACATCACCAATTTTGCT 59.307 42.857 0.00 0.00 0.00 3.91
787 789 2.104451 TGCCACATCACCAATTTTGCTT 59.896 40.909 0.00 0.00 0.00 3.91
788 790 3.323115 TGCCACATCACCAATTTTGCTTA 59.677 39.130 0.00 0.00 0.00 3.09
789 791 4.020396 TGCCACATCACCAATTTTGCTTAT 60.020 37.500 0.00 0.00 0.00 1.73
790 792 4.330620 GCCACATCACCAATTTTGCTTATG 59.669 41.667 0.00 0.00 0.00 1.90
791 793 5.481105 CCACATCACCAATTTTGCTTATGT 58.519 37.500 0.00 0.00 0.00 2.29
792 794 5.349270 CCACATCACCAATTTTGCTTATGTG 59.651 40.000 15.68 15.68 38.31 3.21
793 795 5.349270 CACATCACCAATTTTGCTTATGTGG 59.651 40.000 15.23 0.00 36.82 4.17
794 796 3.924144 TCACCAATTTTGCTTATGTGGC 58.076 40.909 0.00 0.00 0.00 5.01
795 797 3.323115 TCACCAATTTTGCTTATGTGGCA 59.677 39.130 0.00 0.00 37.97 4.92
796 798 4.020396 TCACCAATTTTGCTTATGTGGCAT 60.020 37.500 0.00 0.00 39.54 4.40
797 799 4.330620 CACCAATTTTGCTTATGTGGCATC 59.669 41.667 0.00 0.00 39.54 3.91
798 800 4.223477 ACCAATTTTGCTTATGTGGCATCT 59.777 37.500 0.00 0.00 39.54 2.90
799 801 5.421693 ACCAATTTTGCTTATGTGGCATCTA 59.578 36.000 0.00 0.00 39.54 1.98
800 802 6.098695 ACCAATTTTGCTTATGTGGCATCTAT 59.901 34.615 0.00 0.00 39.54 1.98
801 803 6.422701 CCAATTTTGCTTATGTGGCATCTATG 59.577 38.462 0.00 0.00 39.54 2.23
802 804 6.720112 ATTTTGCTTATGTGGCATCTATGT 57.280 33.333 0.00 0.00 39.54 2.29
803 805 6.528537 TTTTGCTTATGTGGCATCTATGTT 57.471 33.333 0.00 0.00 39.54 2.71
804 806 7.637631 TTTTGCTTATGTGGCATCTATGTTA 57.362 32.000 0.00 0.00 39.54 2.41
805 807 6.618287 TTGCTTATGTGGCATCTATGTTAC 57.382 37.500 0.00 0.00 39.54 2.50
806 808 5.928976 TGCTTATGTGGCATCTATGTTACT 58.071 37.500 0.00 0.00 34.56 2.24
807 809 7.061566 TGCTTATGTGGCATCTATGTTACTA 57.938 36.000 0.00 0.00 34.56 1.82
808 810 6.929049 TGCTTATGTGGCATCTATGTTACTAC 59.071 38.462 0.00 0.00 34.56 2.73
809 811 6.369065 GCTTATGTGGCATCTATGTTACTACC 59.631 42.308 0.00 0.00 0.00 3.18
810 812 7.612065 TTATGTGGCATCTATGTTACTACCT 57.388 36.000 0.00 0.00 0.00 3.08
811 813 8.715190 TTATGTGGCATCTATGTTACTACCTA 57.285 34.615 0.00 0.00 0.00 3.08
812 814 7.798710 ATGTGGCATCTATGTTACTACCTAT 57.201 36.000 0.00 0.00 0.00 2.57
813 815 6.993079 TGTGGCATCTATGTTACTACCTATG 58.007 40.000 0.00 0.00 0.00 2.23
814 816 6.553476 TGTGGCATCTATGTTACTACCTATGT 59.447 38.462 0.00 0.00 0.00 2.29
815 817 7.070696 TGTGGCATCTATGTTACTACCTATGTT 59.929 37.037 0.00 0.00 0.00 2.71
816 818 8.582437 GTGGCATCTATGTTACTACCTATGTTA 58.418 37.037 0.00 0.00 0.00 2.41
817 819 8.582437 TGGCATCTATGTTACTACCTATGTTAC 58.418 37.037 0.00 0.00 0.00 2.50
818 820 8.804204 GGCATCTATGTTACTACCTATGTTACT 58.196 37.037 0.00 0.00 0.00 2.24
819 821 9.843334 GCATCTATGTTACTACCTATGTTACTC 57.157 37.037 0.00 0.00 0.00 2.59
821 823 8.930846 TCTATGTTACTACCTATGTTACTCCC 57.069 38.462 0.00 0.00 0.00 4.30
822 824 8.505246 TCTATGTTACTACCTATGTTACTCCCA 58.495 37.037 0.00 0.00 0.00 4.37
823 825 6.780457 TGTTACTACCTATGTTACTCCCAC 57.220 41.667 0.00 0.00 0.00 4.61
824 826 6.496743 TGTTACTACCTATGTTACTCCCACT 58.503 40.000 0.00 0.00 0.00 4.00
825 827 7.642186 TGTTACTACCTATGTTACTCCCACTA 58.358 38.462 0.00 0.00 0.00 2.74
826 828 8.284435 TGTTACTACCTATGTTACTCCCACTAT 58.716 37.037 0.00 0.00 0.00 2.12
827 829 8.574737 GTTACTACCTATGTTACTCCCACTATG 58.425 40.741 0.00 0.00 0.00 2.23
828 830 6.919158 ACTACCTATGTTACTCCCACTATGA 58.081 40.000 0.00 0.00 0.00 2.15
829 831 6.776603 ACTACCTATGTTACTCCCACTATGAC 59.223 42.308 0.00 0.00 0.00 3.06
830 832 4.900054 ACCTATGTTACTCCCACTATGACC 59.100 45.833 0.00 0.00 0.00 4.02
831 833 4.899457 CCTATGTTACTCCCACTATGACCA 59.101 45.833 0.00 0.00 0.00 4.02
832 834 5.011125 CCTATGTTACTCCCACTATGACCAG 59.989 48.000 0.00 0.00 0.00 4.00
833 835 2.500098 TGTTACTCCCACTATGACCAGC 59.500 50.000 0.00 0.00 0.00 4.85
834 836 1.789523 TACTCCCACTATGACCAGCC 58.210 55.000 0.00 0.00 0.00 4.85
870 872 4.559153 CTCTCAATTTCCCACGCAAAATT 58.441 39.130 0.00 0.00 35.91 1.82
872 874 6.279513 TCTCAATTTCCCACGCAAAATTAT 57.720 33.333 0.00 0.00 34.25 1.28
873 875 6.696411 TCTCAATTTCCCACGCAAAATTATT 58.304 32.000 0.00 0.00 34.25 1.40
874 876 7.831753 TCTCAATTTCCCACGCAAAATTATTA 58.168 30.769 0.00 0.00 34.25 0.98
877 879 8.877779 TCAATTTCCCACGCAAAATTATTATTG 58.122 29.630 0.00 0.00 34.25 1.90
878 880 8.663911 CAATTTCCCACGCAAAATTATTATTGT 58.336 29.630 0.00 0.00 34.25 2.71
879 881 8.785329 ATTTCCCACGCAAAATTATTATTGTT 57.215 26.923 0.00 0.00 0.00 2.83
880 882 8.608844 TTTCCCACGCAAAATTATTATTGTTT 57.391 26.923 0.00 0.00 0.00 2.83
881 883 8.608844 TTCCCACGCAAAATTATTATTGTTTT 57.391 26.923 0.00 0.00 0.00 2.43
947 960 4.635223 TCCATTCTCTATTTCGCCTCATG 58.365 43.478 0.00 0.00 0.00 3.07
962 975 6.246163 TCGCCTCATGTAAGATTATCTCCTA 58.754 40.000 0.00 0.00 0.00 2.94
978 995 5.934402 TCTCCTAAATAAGAGCGTCCTTT 57.066 39.130 0.00 0.00 0.00 3.11
980 997 5.019785 TCCTAAATAAGAGCGTCCTTTCC 57.980 43.478 0.00 0.00 0.00 3.13
982 999 4.571176 CCTAAATAAGAGCGTCCTTTCCAC 59.429 45.833 0.00 0.00 0.00 4.02
983 1000 3.983044 AATAAGAGCGTCCTTTCCACT 57.017 42.857 0.00 0.00 0.00 4.00
989 1010 0.868406 GCGTCCTTTCCACTCTGTTG 59.132 55.000 0.00 0.00 0.00 3.33
1135 1159 0.324460 CTCCCTACCGACCCTTGTCT 60.324 60.000 0.00 0.00 39.47 3.41
1140 1164 2.149803 TACCGACCCTTGTCTGTGCG 62.150 60.000 0.81 0.00 39.04 5.34
1396 1420 1.411612 CCTTACCGGAGTGGGTCATAC 59.588 57.143 9.46 0.00 44.64 2.39
1603 1630 1.671742 CGCCTGGTCTACACCTGTT 59.328 57.895 0.00 0.00 44.17 3.16
1608 1635 2.758979 CCTGGTCTACACCTGTTACGAT 59.241 50.000 0.00 0.00 44.17 3.73
1662 1689 0.323178 AAAGCAGGGAGTGGCAGATG 60.323 55.000 0.00 0.00 0.00 2.90
1674 1701 2.187946 CAGATGCTCCCGTGGTCC 59.812 66.667 0.00 0.00 0.00 4.46
1714 1743 0.033504 TGAGGACGAACACTGGCTTC 59.966 55.000 0.00 0.00 0.00 3.86
1717 1746 0.586802 GGACGAACACTGGCTTCAAC 59.413 55.000 0.00 0.00 0.00 3.18
1763 1792 6.931838 TCGTCTACTGGATACACAAAAATCT 58.068 36.000 0.00 0.00 46.17 2.40
1773 1802 8.052748 TGGATACACAAAAATCTAGCCTACATT 58.947 33.333 0.00 0.00 46.17 2.71
1810 1839 1.457346 GACACTGCAATTCTCCCAGG 58.543 55.000 0.00 0.00 0.00 4.45
1839 1868 1.234615 CGCGAGTTTTGGTGGGTCAT 61.235 55.000 0.00 0.00 0.00 3.06
1906 1935 4.240096 CATTGTCTGCCCAGTTGATTTTC 58.760 43.478 0.00 0.00 0.00 2.29
1917 1946 6.073602 GCCCAGTTGATTTTCATCTTTTTGTC 60.074 38.462 0.00 0.00 0.00 3.18
1952 1981 3.544684 CCGGTCATGATGGAATTGAGAA 58.455 45.455 10.62 0.00 0.00 2.87
1958 1987 6.097270 GGTCATGATGGAATTGAGAAATGGAA 59.903 38.462 0.00 0.00 0.00 3.53
2016 2051 0.311790 TCACCGACGGTACACTTGAC 59.688 55.000 21.25 0.00 32.11 3.18
2019 2054 0.453950 CCGACGGTACACTTGACGAG 60.454 60.000 5.48 0.00 0.00 4.18
2024 2059 1.654105 CGGTACACTTGACGAGCATTC 59.346 52.381 0.00 0.00 0.00 2.67
2086 2121 5.684704 ACTTCTGTACCATGGATATGTTGG 58.315 41.667 21.47 4.65 36.56 3.77
2091 2126 5.189928 TGTACCATGGATATGTTGGTTGAC 58.810 41.667 21.47 0.00 40.87 3.18
2094 2129 2.481289 TGGATATGTTGGTTGACGCA 57.519 45.000 0.00 0.00 0.00 5.24
2166 2201 1.135333 ACGCTCTTTCGGAGGAGATTC 59.865 52.381 7.09 0.00 42.08 2.52
2331 2374 5.520632 AGTAATGATATGTTCGAGGTGACG 58.479 41.667 0.00 0.00 0.00 4.35
2375 2418 2.773487 TGTGACACGGGTAAATTGGAG 58.227 47.619 0.00 0.00 0.00 3.86
2379 2422 4.569564 GTGACACGGGTAAATTGGAGTATC 59.430 45.833 0.00 0.00 0.00 2.24
2478 2521 5.279809 CCAAGGTCCAGCAGTACTAAGTTTA 60.280 44.000 0.00 0.00 0.00 2.01
2485 2528 8.397148 GTCCAGCAGTACTAAGTTTAGTAGTAG 58.603 40.741 15.48 12.10 44.16 2.57
2486 2529 7.066766 TCCAGCAGTACTAAGTTTAGTAGTAGC 59.933 40.741 15.48 18.02 44.16 3.58
2489 2532 6.676456 GCAGTACTAAGTTTAGTAGTAGCGCA 60.676 42.308 11.47 0.00 44.16 6.09
2492 2535 2.580966 AGTTTAGTAGTAGCGCAGGC 57.419 50.000 11.47 0.00 40.37 4.85
2502 2545 2.974698 GCGCAGGCTCGGCAATAT 60.975 61.111 0.30 0.00 35.83 1.28
2503 2546 2.941333 CGCAGGCTCGGCAATATG 59.059 61.111 0.00 0.00 0.00 1.78
2504 2547 2.641559 GCAGGCTCGGCAATATGC 59.358 61.111 0.00 0.00 44.08 3.14
2520 2563 6.128729 GCAATATGCCGATTTATTTGTTTGC 58.871 36.000 0.00 0.00 37.42 3.68
2521 2564 6.238049 GCAATATGCCGATTTATTTGTTTGCA 60.238 34.615 0.00 0.00 37.42 4.08
2522 2565 7.675870 GCAATATGCCGATTTATTTGTTTGCAA 60.676 33.333 0.00 0.00 37.42 4.08
2575 2619 2.680312 TCAGCACAAGTCTATGGCTC 57.320 50.000 0.00 0.00 31.30 4.70
2586 2630 5.913137 AGTCTATGGCTCTATATGACTGC 57.087 43.478 0.00 0.00 32.90 4.40
2595 2639 4.518211 GCTCTATATGACTGCCTGCATTTT 59.482 41.667 0.00 0.00 0.00 1.82
2614 2666 6.457257 GCATTTTTGAACATATGGCATTCCAC 60.457 38.462 4.78 0.00 46.92 4.02
2627 2679 2.716217 CATTCCACCTCCTTTGAGACC 58.284 52.381 0.00 0.00 41.42 3.85
2646 2699 4.717280 AGACCGAGATTCCACCTTTTATCT 59.283 41.667 0.00 0.00 0.00 1.98
2650 2703 5.986135 CCGAGATTCCACCTTTTATCTGTAG 59.014 44.000 0.00 0.00 0.00 2.74
2657 2710 5.047164 TCCACCTTTTATCTGTAGCGTTGTA 60.047 40.000 0.00 0.00 0.00 2.41
2662 2715 8.448615 ACCTTTTATCTGTAGCGTTGTAATTTC 58.551 33.333 0.00 0.00 0.00 2.17
2663 2716 8.665685 CCTTTTATCTGTAGCGTTGTAATTTCT 58.334 33.333 0.00 0.00 0.00 2.52
2673 2726 9.351570 GTAGCGTTGTAATTTCTATCCTATACC 57.648 37.037 0.00 0.00 0.00 2.73
2708 2761 4.817517 TCCGTTGGACAGAATTTAGACTC 58.182 43.478 0.00 0.00 0.00 3.36
2744 2797 2.427506 CTGTAAGAGGTTCCACTTGGC 58.572 52.381 10.83 5.54 34.07 4.52
2760 2813 5.237815 CACTTGGCCTTTTTATTTTCTCCC 58.762 41.667 3.32 0.00 0.00 4.30
2769 2822 7.323420 CCTTTTTATTTTCTCCCAATCACTCC 58.677 38.462 0.00 0.00 0.00 3.85
2770 2823 7.039082 CCTTTTTATTTTCTCCCAATCACTCCA 60.039 37.037 0.00 0.00 0.00 3.86
2776 2829 4.387026 TCTCCCAATCACTCCATTGTTT 57.613 40.909 0.00 0.00 32.61 2.83
2780 2833 4.653341 TCCCAATCACTCCATTGTTTTGTT 59.347 37.500 0.00 0.00 32.61 2.83
2781 2834 5.130145 TCCCAATCACTCCATTGTTTTGTTT 59.870 36.000 0.00 0.00 32.61 2.83
2787 2840 5.049828 CACTCCATTGTTTTGTTTTCCCTC 58.950 41.667 0.00 0.00 0.00 4.30
2800 2853 6.139679 TGTTTTCCCTCTCATTCACCTTAT 57.860 37.500 0.00 0.00 0.00 1.73
2834 2889 9.781425 ATGAGATACCTATCCATCTACTTGAAT 57.219 33.333 0.00 0.00 31.63 2.57
2859 2914 7.738437 ACAATATTCACTTCCAATTTGGGAT 57.262 32.000 15.37 0.00 38.32 3.85
2882 2937 9.136323 GGATTCTTCCCATGAAATAGTTTACAT 57.864 33.333 0.00 0.00 35.84 2.29
2889 2944 9.921637 TCCCATGAAATAGTTTACATTTTGAAC 57.078 29.630 0.00 0.00 0.00 3.18
2967 3022 4.384208 GGCAGAAAATAGGTTAGCTGGAGA 60.384 45.833 0.00 0.00 0.00 3.71
3158 3216 3.466836 TGATGCTCAAACGGATGTATCC 58.533 45.455 0.63 0.63 43.65 2.59
3189 3249 2.512485 TCCGTTTGAGCGTCAAGTAA 57.488 45.000 1.72 0.00 37.70 2.24
3198 3258 3.512329 TGAGCGTCAAGTAATAAGGGACA 59.488 43.478 0.00 0.00 0.00 4.02
3243 3303 5.749032 GCTGGCCTATATTTGTAGACCCAAT 60.749 44.000 3.32 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 8.946085 CCTTCAAGCTGATAGTTTGTATTGTTA 58.054 33.333 5.53 0.00 37.62 2.41
93 94 7.665559 TCCTTCAAGCTGATAGTTTGTATTGTT 59.334 33.333 5.53 0.00 37.62 2.83
94 95 7.119846 GTCCTTCAAGCTGATAGTTTGTATTGT 59.880 37.037 5.53 0.00 37.62 2.71
95 96 7.467623 GTCCTTCAAGCTGATAGTTTGTATTG 58.532 38.462 5.53 0.00 37.62 1.90
96 97 6.313905 CGTCCTTCAAGCTGATAGTTTGTATT 59.686 38.462 5.53 0.00 37.62 1.89
97 98 5.812642 CGTCCTTCAAGCTGATAGTTTGTAT 59.187 40.000 5.53 0.00 37.62 2.29
98 99 5.047590 TCGTCCTTCAAGCTGATAGTTTGTA 60.048 40.000 5.53 0.00 37.62 2.41
99 100 3.997021 CGTCCTTCAAGCTGATAGTTTGT 59.003 43.478 5.53 0.00 37.62 2.83
100 101 4.245660 TCGTCCTTCAAGCTGATAGTTTG 58.754 43.478 0.00 0.00 37.71 2.93
101 102 4.220821 TCTCGTCCTTCAAGCTGATAGTTT 59.779 41.667 0.00 0.00 0.00 2.66
102 103 3.764434 TCTCGTCCTTCAAGCTGATAGTT 59.236 43.478 0.00 0.00 0.00 2.24
103 104 3.129638 GTCTCGTCCTTCAAGCTGATAGT 59.870 47.826 0.00 0.00 0.00 2.12
104 105 3.701241 GTCTCGTCCTTCAAGCTGATAG 58.299 50.000 0.00 0.00 0.00 2.08
105 106 2.097629 CGTCTCGTCCTTCAAGCTGATA 59.902 50.000 0.00 0.00 0.00 2.15
106 107 1.135257 CGTCTCGTCCTTCAAGCTGAT 60.135 52.381 0.00 0.00 0.00 2.90
107 108 0.241213 CGTCTCGTCCTTCAAGCTGA 59.759 55.000 0.00 0.00 0.00 4.26
108 109 0.039074 ACGTCTCGTCCTTCAAGCTG 60.039 55.000 0.00 0.00 33.69 4.24
109 110 0.039074 CACGTCTCGTCCTTCAAGCT 60.039 55.000 0.00 0.00 38.32 3.74
110 111 1.009389 CCACGTCTCGTCCTTCAAGC 61.009 60.000 0.00 0.00 38.32 4.01
111 112 1.009389 GCCACGTCTCGTCCTTCAAG 61.009 60.000 0.00 0.00 38.32 3.02
112 113 1.006571 GCCACGTCTCGTCCTTCAA 60.007 57.895 0.00 0.00 38.32 2.69
113 114 1.863662 GAGCCACGTCTCGTCCTTCA 61.864 60.000 0.00 0.00 38.32 3.02
114 115 1.153997 GAGCCACGTCTCGTCCTTC 60.154 63.158 0.00 0.00 38.32 3.46
115 116 2.963371 GAGCCACGTCTCGTCCTT 59.037 61.111 0.00 0.00 38.32 3.36
121 122 1.078759 CAACCATCGAGCCACGTCTC 61.079 60.000 0.00 0.00 43.13 3.36
122 123 1.079819 CAACCATCGAGCCACGTCT 60.080 57.895 0.00 0.00 43.13 4.18
123 124 2.100631 CCAACCATCGAGCCACGTC 61.101 63.158 0.00 0.00 43.13 4.34
124 125 2.047274 CCAACCATCGAGCCACGT 60.047 61.111 0.00 0.00 43.13 4.49
125 126 2.819595 CCCAACCATCGAGCCACG 60.820 66.667 0.00 0.00 44.09 4.94
126 127 2.438434 CCCCAACCATCGAGCCAC 60.438 66.667 0.00 0.00 0.00 5.01
127 128 2.534396 AACCCCAACCATCGAGCCA 61.534 57.895 0.00 0.00 0.00 4.75
128 129 2.046285 CAACCCCAACCATCGAGCC 61.046 63.158 0.00 0.00 0.00 4.70
129 130 2.046285 CCAACCCCAACCATCGAGC 61.046 63.158 0.00 0.00 0.00 5.03
130 131 2.046285 GCCAACCCCAACCATCGAG 61.046 63.158 0.00 0.00 0.00 4.04
131 132 2.034999 GCCAACCCCAACCATCGA 59.965 61.111 0.00 0.00 0.00 3.59
132 133 2.282816 TGCCAACCCCAACCATCG 60.283 61.111 0.00 0.00 0.00 3.84
133 134 1.228862 ACTGCCAACCCCAACCATC 60.229 57.895 0.00 0.00 0.00 3.51
134 135 1.533753 CACTGCCAACCCCAACCAT 60.534 57.895 0.00 0.00 0.00 3.55
135 136 2.123511 CACTGCCAACCCCAACCA 60.124 61.111 0.00 0.00 0.00 3.67
136 137 2.917227 CCACTGCCAACCCCAACC 60.917 66.667 0.00 0.00 0.00 3.77
137 138 3.615709 GCCACTGCCAACCCCAAC 61.616 66.667 0.00 0.00 0.00 3.77
160 161 3.460672 GATCGATCTTGGGCGGGCA 62.461 63.158 18.29 0.00 0.00 5.36
179 180 1.035932 ACACCCACGTCGATCCTAGG 61.036 60.000 0.82 0.82 0.00 3.02
180 181 0.381089 GACACCCACGTCGATCCTAG 59.619 60.000 0.00 0.00 0.00 3.02
182 183 1.304217 AGACACCCACGTCGATCCT 60.304 57.895 0.00 0.00 40.98 3.24
187 188 0.939577 CAAGTGAGACACCCACGTCG 60.940 60.000 0.00 0.00 40.98 5.12
194 195 3.434940 AAATACCCCAAGTGAGACACC 57.565 47.619 0.00 0.00 34.49 4.16
198 199 3.732048 GGGAAAATACCCCAAGTGAGA 57.268 47.619 0.00 0.00 43.81 3.27
230 231 5.524284 GTGAATAGCTCGTAGATGTGTGAT 58.476 41.667 0.00 0.00 33.89 3.06
237 238 3.478509 ACTCCGTGAATAGCTCGTAGAT 58.521 45.455 0.00 0.00 33.89 1.98
247 248 4.676986 CGAAGTCATCCAACTCCGTGAATA 60.677 45.833 0.00 0.00 0.00 1.75
256 257 3.771577 AACTTCCGAAGTCATCCAACT 57.228 42.857 14.18 0.00 41.91 3.16
265 266 4.743644 CACGTCTTAAGAAACTTCCGAAGT 59.256 41.667 15.32 8.03 45.46 3.01
270 271 3.121092 GCGACACGTCTTAAGAAACTTCC 60.121 47.826 6.78 0.00 0.00 3.46
273 274 3.088194 TGCGACACGTCTTAAGAAACT 57.912 42.857 6.78 0.00 0.00 2.66
280 281 2.993449 TACACATGCGACACGTCTTA 57.007 45.000 0.00 0.00 0.00 2.10
285 286 7.241376 TCTATAATCTATACACATGCGACACG 58.759 38.462 0.00 0.00 0.00 4.49
286 287 9.227490 GATCTATAATCTATACACATGCGACAC 57.773 37.037 0.00 0.00 0.00 3.67
324 325 2.026262 CCCCACTAAACACACCTGCTAT 60.026 50.000 0.00 0.00 0.00 2.97
327 328 0.179001 ACCCCACTAAACACACCTGC 60.179 55.000 0.00 0.00 0.00 4.85
330 331 0.538746 CCCACCCCACTAAACACACC 60.539 60.000 0.00 0.00 0.00 4.16
333 334 1.176619 GCACCCACCCCACTAAACAC 61.177 60.000 0.00 0.00 0.00 3.32
337 338 2.850130 ACGCACCCACCCCACTAA 60.850 61.111 0.00 0.00 0.00 2.24
344 345 4.041917 CACATGCACGCACCCACC 62.042 66.667 0.00 0.00 0.00 4.61
358 359 0.242286 GCACAACACACAACACCACA 59.758 50.000 0.00 0.00 0.00 4.17
417 419 6.653526 TTGAGTTGAAACATCATTGGTGAT 57.346 33.333 3.38 0.00 45.87 3.06
529 531 2.261671 CTAGCCGTGCTCACCGTT 59.738 61.111 1.46 0.00 40.44 4.44
532 534 2.184579 GGTCTAGCCGTGCTCACC 59.815 66.667 1.46 6.46 40.44 4.02
545 547 1.972660 GCCTAATGGGAGCACGGTCT 61.973 60.000 0.00 0.00 37.23 3.85
548 550 1.524621 CAGCCTAATGGGAGCACGG 60.525 63.158 0.00 0.00 37.23 4.94
552 554 0.475906 ATGACCAGCCTAATGGGAGC 59.524 55.000 0.00 0.00 45.25 4.70
553 555 2.975489 ACTATGACCAGCCTAATGGGAG 59.025 50.000 0.00 0.00 45.25 4.30
560 562 2.245028 ACTCTCCACTATGACCAGCCTA 59.755 50.000 0.00 0.00 0.00 3.93
561 563 1.007721 ACTCTCCACTATGACCAGCCT 59.992 52.381 0.00 0.00 0.00 4.58
562 564 1.490574 ACTCTCCACTATGACCAGCC 58.509 55.000 0.00 0.00 0.00 4.85
563 565 3.702045 AGTTACTCTCCACTATGACCAGC 59.298 47.826 0.00 0.00 0.00 4.85
564 566 5.923733 AAGTTACTCTCCACTATGACCAG 57.076 43.478 0.00 0.00 0.00 4.00
565 567 6.602406 GTCTAAGTTACTCTCCACTATGACCA 59.398 42.308 0.00 0.00 0.00 4.02
566 568 6.829811 AGTCTAAGTTACTCTCCACTATGACC 59.170 42.308 0.00 0.00 31.22 4.02
567 569 7.868906 AGTCTAAGTTACTCTCCACTATGAC 57.131 40.000 0.00 0.00 0.00 3.06
568 570 8.770322 ACTAGTCTAAGTTACTCTCCACTATGA 58.230 37.037 0.00 0.00 0.00 2.15
569 571 8.967664 ACTAGTCTAAGTTACTCTCCACTATG 57.032 38.462 0.00 0.00 0.00 2.23
571 573 9.883142 GTTACTAGTCTAAGTTACTCTCCACTA 57.117 37.037 0.00 0.00 0.00 2.74
572 574 8.381636 TGTTACTAGTCTAAGTTACTCTCCACT 58.618 37.037 0.00 0.00 31.82 4.00
573 575 8.558973 TGTTACTAGTCTAAGTTACTCTCCAC 57.441 38.462 0.00 0.00 31.82 4.02
605 607 9.964354 TGAAGGTAGTAACATAGACTAGTAACA 57.036 33.333 0.00 0.00 30.08 2.41
611 613 9.570468 CCACTATGAAGGTAGTAACATAGACTA 57.430 37.037 16.37 0.00 42.41 2.59
612 614 7.506261 CCCACTATGAAGGTAGTAACATAGACT 59.494 40.741 16.37 0.00 42.41 3.24
613 615 7.287235 ACCCACTATGAAGGTAGTAACATAGAC 59.713 40.741 16.37 0.00 42.41 2.59
614 616 7.359849 ACCCACTATGAAGGTAGTAACATAGA 58.640 38.462 16.37 0.00 42.41 1.98
615 617 7.598759 ACCCACTATGAAGGTAGTAACATAG 57.401 40.000 0.00 0.00 44.14 2.23
616 618 8.701908 CTACCCACTATGAAGGTAGTAACATA 57.298 38.462 7.19 0.00 45.39 2.29
617 619 7.598759 CTACCCACTATGAAGGTAGTAACAT 57.401 40.000 7.19 0.00 45.39 2.71
624 626 4.938028 TGACACTACCCACTATGAAGGTA 58.062 43.478 0.00 0.00 35.02 3.08
625 627 3.786553 TGACACTACCCACTATGAAGGT 58.213 45.455 0.00 0.00 37.69 3.50
626 628 5.011125 CCTATGACACTACCCACTATGAAGG 59.989 48.000 0.00 0.00 0.00 3.46
627 629 5.598830 ACCTATGACACTACCCACTATGAAG 59.401 44.000 0.00 0.00 0.00 3.02
628 630 5.362717 CACCTATGACACTACCCACTATGAA 59.637 44.000 0.00 0.00 0.00 2.57
629 631 4.893524 CACCTATGACACTACCCACTATGA 59.106 45.833 0.00 0.00 0.00 2.15
630 632 4.649674 ACACCTATGACACTACCCACTATG 59.350 45.833 0.00 0.00 0.00 2.23
631 633 4.649674 CACACCTATGACACTACCCACTAT 59.350 45.833 0.00 0.00 0.00 2.12
632 634 4.021229 CACACCTATGACACTACCCACTA 58.979 47.826 0.00 0.00 0.00 2.74
633 635 2.832129 CACACCTATGACACTACCCACT 59.168 50.000 0.00 0.00 0.00 4.00
634 636 2.093658 CCACACCTATGACACTACCCAC 60.094 54.545 0.00 0.00 0.00 4.61
635 637 2.184533 CCACACCTATGACACTACCCA 58.815 52.381 0.00 0.00 0.00 4.51
636 638 2.185387 ACCACACCTATGACACTACCC 58.815 52.381 0.00 0.00 0.00 3.69
637 639 4.221262 TGTTACCACACCTATGACACTACC 59.779 45.833 0.00 0.00 0.00 3.18
638 640 5.395682 TGTTACCACACCTATGACACTAC 57.604 43.478 0.00 0.00 0.00 2.73
639 641 6.893554 ACTATGTTACCACACCTATGACACTA 59.106 38.462 0.00 0.00 35.03 2.74
640 642 5.720041 ACTATGTTACCACACCTATGACACT 59.280 40.000 0.00 0.00 35.03 3.55
641 643 5.974108 ACTATGTTACCACACCTATGACAC 58.026 41.667 0.00 0.00 35.03 3.67
642 644 6.403049 CAACTATGTTACCACACCTATGACA 58.597 40.000 0.00 0.00 35.03 3.58
643 645 5.293569 GCAACTATGTTACCACACCTATGAC 59.706 44.000 0.00 0.00 35.03 3.06
644 646 5.424757 GCAACTATGTTACCACACCTATGA 58.575 41.667 0.00 0.00 35.03 2.15
645 647 4.574828 GGCAACTATGTTACCACACCTATG 59.425 45.833 0.00 0.00 35.03 2.23
646 648 4.777463 GGCAACTATGTTACCACACCTAT 58.223 43.478 0.00 0.00 35.03 2.57
647 649 4.210724 GGCAACTATGTTACCACACCTA 57.789 45.455 0.00 0.00 35.03 3.08
648 650 3.067684 GGCAACTATGTTACCACACCT 57.932 47.619 0.00 0.00 35.03 4.00
663 665 9.556030 GTCTACAAAGTAATAAATGAAGGCAAC 57.444 33.333 0.00 0.00 0.00 4.17
664 666 9.515226 AGTCTACAAAGTAATAAATGAAGGCAA 57.485 29.630 0.00 0.00 0.00 4.52
665 667 9.162764 GAGTCTACAAAGTAATAAATGAAGGCA 57.837 33.333 0.00 0.00 0.00 4.75
666 668 9.162764 TGAGTCTACAAAGTAATAAATGAAGGC 57.837 33.333 0.00 0.00 0.00 4.35
677 679 8.892723 CCAATGCATAATGAGTCTACAAAGTAA 58.107 33.333 0.00 0.00 0.00 2.24
678 680 8.264347 TCCAATGCATAATGAGTCTACAAAGTA 58.736 33.333 0.00 0.00 0.00 2.24
679 681 7.112122 TCCAATGCATAATGAGTCTACAAAGT 58.888 34.615 0.00 0.00 0.00 2.66
680 682 7.558161 TCCAATGCATAATGAGTCTACAAAG 57.442 36.000 0.00 0.00 0.00 2.77
681 683 7.936496 TTCCAATGCATAATGAGTCTACAAA 57.064 32.000 0.00 0.00 0.00 2.83
682 684 7.148086 GGTTTCCAATGCATAATGAGTCTACAA 60.148 37.037 0.00 0.00 0.00 2.41
683 685 6.318648 GGTTTCCAATGCATAATGAGTCTACA 59.681 38.462 0.00 0.00 0.00 2.74
684 686 6.511767 CGGTTTCCAATGCATAATGAGTCTAC 60.512 42.308 0.00 0.00 0.00 2.59
685 687 5.527214 CGGTTTCCAATGCATAATGAGTCTA 59.473 40.000 0.00 0.00 0.00 2.59
686 688 4.336433 CGGTTTCCAATGCATAATGAGTCT 59.664 41.667 0.00 0.00 0.00 3.24
687 689 4.601019 CGGTTTCCAATGCATAATGAGTC 58.399 43.478 0.00 0.00 0.00 3.36
688 690 3.181487 GCGGTTTCCAATGCATAATGAGT 60.181 43.478 0.00 0.00 0.00 3.41
689 691 3.067180 AGCGGTTTCCAATGCATAATGAG 59.933 43.478 0.00 0.00 0.00 2.90
690 692 3.023119 AGCGGTTTCCAATGCATAATGA 58.977 40.909 0.00 0.00 0.00 2.57
691 693 3.441496 AGCGGTTTCCAATGCATAATG 57.559 42.857 0.00 0.00 0.00 1.90
692 694 4.584325 ACATAGCGGTTTCCAATGCATAAT 59.416 37.500 0.00 0.00 0.00 1.28
693 695 3.951037 ACATAGCGGTTTCCAATGCATAA 59.049 39.130 0.00 0.00 0.00 1.90
694 696 3.314913 CACATAGCGGTTTCCAATGCATA 59.685 43.478 0.00 0.00 0.00 3.14
695 697 2.099592 CACATAGCGGTTTCCAATGCAT 59.900 45.455 0.00 0.00 0.00 3.96
696 698 1.472082 CACATAGCGGTTTCCAATGCA 59.528 47.619 0.00 0.00 0.00 3.96
697 699 1.742831 TCACATAGCGGTTTCCAATGC 59.257 47.619 0.00 0.00 0.00 3.56
698 700 3.243168 CCATCACATAGCGGTTTCCAATG 60.243 47.826 0.00 0.00 0.00 2.82
699 701 2.951642 CCATCACATAGCGGTTTCCAAT 59.048 45.455 0.00 0.00 0.00 3.16
700 702 2.290641 ACCATCACATAGCGGTTTCCAA 60.291 45.455 0.00 0.00 0.00 3.53
701 703 1.280710 ACCATCACATAGCGGTTTCCA 59.719 47.619 0.00 0.00 0.00 3.53
702 704 2.038387 ACCATCACATAGCGGTTTCC 57.962 50.000 0.00 0.00 0.00 3.13
703 705 3.936453 TGTTACCATCACATAGCGGTTTC 59.064 43.478 0.00 0.00 32.81 2.78
704 706 3.945346 TGTTACCATCACATAGCGGTTT 58.055 40.909 0.00 0.00 32.81 3.27
705 707 3.620427 TGTTACCATCACATAGCGGTT 57.380 42.857 0.00 0.00 32.81 4.44
706 708 3.838244 ATGTTACCATCACATAGCGGT 57.162 42.857 0.00 0.00 32.88 5.68
707 709 7.549134 ACATAATATGTTACCATCACATAGCGG 59.451 37.037 0.00 0.00 41.63 5.52
708 710 8.479313 ACATAATATGTTACCATCACATAGCG 57.521 34.615 0.00 0.00 41.63 4.26
727 729 9.771534 GAAGAGAGGCAAATAGAGTAACATAAT 57.228 33.333 0.00 0.00 0.00 1.28
728 730 8.982723 AGAAGAGAGGCAAATAGAGTAACATAA 58.017 33.333 0.00 0.00 0.00 1.90
729 731 8.540507 AGAAGAGAGGCAAATAGAGTAACATA 57.459 34.615 0.00 0.00 0.00 2.29
730 732 7.124901 TGAGAAGAGAGGCAAATAGAGTAACAT 59.875 37.037 0.00 0.00 0.00 2.71
731 733 6.437477 TGAGAAGAGAGGCAAATAGAGTAACA 59.563 38.462 0.00 0.00 0.00 2.41
732 734 6.868622 TGAGAAGAGAGGCAAATAGAGTAAC 58.131 40.000 0.00 0.00 0.00 2.50
733 735 7.667575 ATGAGAAGAGAGGCAAATAGAGTAA 57.332 36.000 0.00 0.00 0.00 2.24
734 736 7.667575 AATGAGAAGAGAGGCAAATAGAGTA 57.332 36.000 0.00 0.00 0.00 2.59
735 737 6.558488 AATGAGAAGAGAGGCAAATAGAGT 57.442 37.500 0.00 0.00 0.00 3.24
736 738 8.203485 AGTTAATGAGAAGAGAGGCAAATAGAG 58.797 37.037 0.00 0.00 0.00 2.43
737 739 8.083828 AGTTAATGAGAAGAGAGGCAAATAGA 57.916 34.615 0.00 0.00 0.00 1.98
738 740 9.255304 GTAGTTAATGAGAAGAGAGGCAAATAG 57.745 37.037 0.00 0.00 0.00 1.73
739 741 8.982723 AGTAGTTAATGAGAAGAGAGGCAAATA 58.017 33.333 0.00 0.00 0.00 1.40
740 742 7.856415 AGTAGTTAATGAGAAGAGAGGCAAAT 58.144 34.615 0.00 0.00 0.00 2.32
741 743 7.246171 AGTAGTTAATGAGAAGAGAGGCAAA 57.754 36.000 0.00 0.00 0.00 3.68
742 744 6.859112 AGTAGTTAATGAGAAGAGAGGCAA 57.141 37.500 0.00 0.00 0.00 4.52
743 745 6.634805 CAAGTAGTTAATGAGAAGAGAGGCA 58.365 40.000 0.00 0.00 0.00 4.75
744 746 5.522097 GCAAGTAGTTAATGAGAAGAGAGGC 59.478 44.000 0.00 0.00 0.00 4.70
745 747 6.045955 GGCAAGTAGTTAATGAGAAGAGAGG 58.954 44.000 0.00 0.00 0.00 3.69
746 748 6.533367 GTGGCAAGTAGTTAATGAGAAGAGAG 59.467 42.308 0.00 0.00 0.00 3.20
747 749 6.014584 TGTGGCAAGTAGTTAATGAGAAGAGA 60.015 38.462 0.00 0.00 0.00 3.10
748 750 6.166279 TGTGGCAAGTAGTTAATGAGAAGAG 58.834 40.000 0.00 0.00 0.00 2.85
749 751 6.109156 TGTGGCAAGTAGTTAATGAGAAGA 57.891 37.500 0.00 0.00 0.00 2.87
750 752 6.595326 TGATGTGGCAAGTAGTTAATGAGAAG 59.405 38.462 0.00 0.00 0.00 2.85
751 753 6.371548 GTGATGTGGCAAGTAGTTAATGAGAA 59.628 38.462 0.00 0.00 0.00 2.87
752 754 5.874810 GTGATGTGGCAAGTAGTTAATGAGA 59.125 40.000 0.00 0.00 0.00 3.27
753 755 5.065218 GGTGATGTGGCAAGTAGTTAATGAG 59.935 44.000 0.00 0.00 0.00 2.90
754 756 4.941263 GGTGATGTGGCAAGTAGTTAATGA 59.059 41.667 0.00 0.00 0.00 2.57
755 757 4.699735 TGGTGATGTGGCAAGTAGTTAATG 59.300 41.667 0.00 0.00 0.00 1.90
756 758 4.917385 TGGTGATGTGGCAAGTAGTTAAT 58.083 39.130 0.00 0.00 0.00 1.40
757 759 4.359434 TGGTGATGTGGCAAGTAGTTAA 57.641 40.909 0.00 0.00 0.00 2.01
758 760 4.359434 TTGGTGATGTGGCAAGTAGTTA 57.641 40.909 0.00 0.00 0.00 2.24
759 761 2.949177 TGGTGATGTGGCAAGTAGTT 57.051 45.000 0.00 0.00 0.00 2.24
760 762 2.949177 TTGGTGATGTGGCAAGTAGT 57.051 45.000 0.00 0.00 0.00 2.73
761 763 4.789012 AAATTGGTGATGTGGCAAGTAG 57.211 40.909 0.00 0.00 0.00 2.57
762 764 4.798924 GCAAAATTGGTGATGTGGCAAGTA 60.799 41.667 0.00 0.00 0.00 2.24
763 765 3.731089 CAAAATTGGTGATGTGGCAAGT 58.269 40.909 0.00 0.00 0.00 3.16
764 766 2.481185 GCAAAATTGGTGATGTGGCAAG 59.519 45.455 0.00 0.00 0.00 4.01
765 767 2.104451 AGCAAAATTGGTGATGTGGCAA 59.896 40.909 0.00 0.00 37.53 4.52
766 768 1.693062 AGCAAAATTGGTGATGTGGCA 59.307 42.857 0.00 0.00 37.53 4.92
767 769 2.460757 AGCAAAATTGGTGATGTGGC 57.539 45.000 0.00 0.00 37.53 5.01
772 774 4.020396 TGCCACATAAGCAAAATTGGTGAT 60.020 37.500 0.00 0.00 39.13 3.06
773 775 3.323115 TGCCACATAAGCAAAATTGGTGA 59.677 39.130 0.00 0.00 39.13 4.02
774 776 3.661944 TGCCACATAAGCAAAATTGGTG 58.338 40.909 0.00 0.00 39.13 4.17
775 777 4.223477 AGATGCCACATAAGCAAAATTGGT 59.777 37.500 0.00 0.00 44.83 3.67
776 778 4.761975 AGATGCCACATAAGCAAAATTGG 58.238 39.130 0.00 0.00 44.83 3.16
777 779 6.982141 ACATAGATGCCACATAAGCAAAATTG 59.018 34.615 0.00 0.00 44.83 2.32
778 780 7.116075 ACATAGATGCCACATAAGCAAAATT 57.884 32.000 0.00 0.00 44.83 1.82
779 781 6.720112 ACATAGATGCCACATAAGCAAAAT 57.280 33.333 0.00 0.00 44.83 1.82
780 782 6.528537 AACATAGATGCCACATAAGCAAAA 57.471 33.333 0.00 0.00 44.83 2.44
781 783 6.828273 AGTAACATAGATGCCACATAAGCAAA 59.172 34.615 0.00 0.00 44.83 3.68
782 784 6.356556 AGTAACATAGATGCCACATAAGCAA 58.643 36.000 0.00 0.00 44.83 3.91
783 785 5.928976 AGTAACATAGATGCCACATAAGCA 58.071 37.500 0.00 0.00 45.94 3.91
784 786 6.369065 GGTAGTAACATAGATGCCACATAAGC 59.631 42.308 0.00 0.00 0.00 3.09
785 787 7.671302 AGGTAGTAACATAGATGCCACATAAG 58.329 38.462 0.00 0.00 0.00 1.73
786 788 7.612065 AGGTAGTAACATAGATGCCACATAA 57.388 36.000 0.00 0.00 0.00 1.90
787 789 8.749354 CATAGGTAGTAACATAGATGCCACATA 58.251 37.037 0.00 0.00 0.00 2.29
788 790 7.235606 ACATAGGTAGTAACATAGATGCCACAT 59.764 37.037 0.00 0.00 0.00 3.21
789 791 6.553476 ACATAGGTAGTAACATAGATGCCACA 59.447 38.462 0.00 0.00 0.00 4.17
790 792 6.994221 ACATAGGTAGTAACATAGATGCCAC 58.006 40.000 0.00 0.00 0.00 5.01
791 793 7.612065 AACATAGGTAGTAACATAGATGCCA 57.388 36.000 0.00 0.00 0.00 4.92
792 794 8.804204 AGTAACATAGGTAGTAACATAGATGCC 58.196 37.037 0.00 0.00 0.00 4.40
793 795 9.843334 GAGTAACATAGGTAGTAACATAGATGC 57.157 37.037 0.00 0.00 0.00 3.91
795 797 9.531158 GGGAGTAACATAGGTAGTAACATAGAT 57.469 37.037 0.00 0.00 0.00 1.98
796 798 8.505246 TGGGAGTAACATAGGTAGTAACATAGA 58.495 37.037 0.00 0.00 0.00 1.98
797 799 8.574737 GTGGGAGTAACATAGGTAGTAACATAG 58.425 40.741 0.00 0.00 0.00 2.23
798 800 8.284435 AGTGGGAGTAACATAGGTAGTAACATA 58.716 37.037 0.00 0.00 0.00 2.29
799 801 7.130775 AGTGGGAGTAACATAGGTAGTAACAT 58.869 38.462 0.00 0.00 0.00 2.71
800 802 6.496743 AGTGGGAGTAACATAGGTAGTAACA 58.503 40.000 0.00 0.00 0.00 2.41
801 803 8.574737 CATAGTGGGAGTAACATAGGTAGTAAC 58.425 40.741 0.00 0.00 0.00 2.50
802 804 8.505246 TCATAGTGGGAGTAACATAGGTAGTAA 58.495 37.037 0.00 0.00 0.00 2.24
803 805 7.941238 GTCATAGTGGGAGTAACATAGGTAGTA 59.059 40.741 0.00 0.00 0.00 1.82
804 806 6.776603 GTCATAGTGGGAGTAACATAGGTAGT 59.223 42.308 0.00 0.00 0.00 2.73
805 807 6.208994 GGTCATAGTGGGAGTAACATAGGTAG 59.791 46.154 0.00 0.00 0.00 3.18
806 808 6.073314 GGTCATAGTGGGAGTAACATAGGTA 58.927 44.000 0.00 0.00 0.00 3.08
807 809 4.900054 GGTCATAGTGGGAGTAACATAGGT 59.100 45.833 0.00 0.00 0.00 3.08
808 810 4.899457 TGGTCATAGTGGGAGTAACATAGG 59.101 45.833 0.00 0.00 0.00 2.57
809 811 5.509840 GCTGGTCATAGTGGGAGTAACATAG 60.510 48.000 0.00 0.00 0.00 2.23
810 812 4.344102 GCTGGTCATAGTGGGAGTAACATA 59.656 45.833 0.00 0.00 0.00 2.29
811 813 3.134804 GCTGGTCATAGTGGGAGTAACAT 59.865 47.826 0.00 0.00 0.00 2.71
812 814 2.500098 GCTGGTCATAGTGGGAGTAACA 59.500 50.000 0.00 0.00 0.00 2.41
813 815 2.158943 GGCTGGTCATAGTGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
814 816 2.116238 GGCTGGTCATAGTGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
815 817 1.291033 AGGCTGGTCATAGTGGGAGTA 59.709 52.381 0.00 0.00 0.00 2.59
816 818 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.000 0.00 0.00 0.00 3.85
817 819 1.207791 AAGGCTGGTCATAGTGGGAG 58.792 55.000 0.00 0.00 0.00 4.30
818 820 2.116238 GTAAGGCTGGTCATAGTGGGA 58.884 52.381 0.00 0.00 0.00 4.37
819 821 1.202533 CGTAAGGCTGGTCATAGTGGG 60.203 57.143 0.00 0.00 0.00 4.61
820 822 1.480954 ACGTAAGGCTGGTCATAGTGG 59.519 52.381 0.00 0.00 46.39 4.00
821 823 2.961526 ACGTAAGGCTGGTCATAGTG 57.038 50.000 0.00 0.00 46.39 2.74
822 824 6.720112 TTATAACGTAAGGCTGGTCATAGT 57.280 37.500 0.00 0.00 46.39 2.12
823 825 6.145696 GCTTTATAACGTAAGGCTGGTCATAG 59.854 42.308 0.00 0.00 46.39 2.23
824 826 5.987347 GCTTTATAACGTAAGGCTGGTCATA 59.013 40.000 0.00 0.00 46.39 2.15
825 827 4.814771 GCTTTATAACGTAAGGCTGGTCAT 59.185 41.667 0.00 0.00 46.39 3.06
826 828 4.081309 AGCTTTATAACGTAAGGCTGGTCA 60.081 41.667 5.47 0.00 38.24 4.02
827 829 4.439968 AGCTTTATAACGTAAGGCTGGTC 58.560 43.478 5.47 0.00 38.24 4.02
828 830 4.161754 AGAGCTTTATAACGTAAGGCTGGT 59.838 41.667 10.49 0.00 39.47 4.00
829 831 4.694339 AGAGCTTTATAACGTAAGGCTGG 58.306 43.478 10.49 0.00 39.47 4.85
830 832 5.348986 TGAGAGCTTTATAACGTAAGGCTG 58.651 41.667 10.49 0.00 39.47 4.85
831 833 5.593679 TGAGAGCTTTATAACGTAAGGCT 57.406 39.130 5.92 5.92 41.57 4.58
832 834 6.846325 ATTGAGAGCTTTATAACGTAAGGC 57.154 37.500 0.00 0.00 46.39 4.35
833 835 8.336080 GGAAATTGAGAGCTTTATAACGTAAGG 58.664 37.037 0.00 0.00 46.39 2.69
914 921 9.050601 CGAAATAGAGAATGGAGAGCTTTATTT 57.949 33.333 0.00 0.00 33.97 1.40
916 923 6.648725 GCGAAATAGAGAATGGAGAGCTTTAT 59.351 38.462 0.00 0.00 0.00 1.40
917 924 5.986135 GCGAAATAGAGAATGGAGAGCTTTA 59.014 40.000 0.00 0.00 0.00 1.85
918 925 4.813697 GCGAAATAGAGAATGGAGAGCTTT 59.186 41.667 0.00 0.00 0.00 3.51
919 926 4.376146 GCGAAATAGAGAATGGAGAGCTT 58.624 43.478 0.00 0.00 0.00 3.74
920 927 3.244044 GGCGAAATAGAGAATGGAGAGCT 60.244 47.826 0.00 0.00 0.00 4.09
921 928 3.063485 GGCGAAATAGAGAATGGAGAGC 58.937 50.000 0.00 0.00 0.00 4.09
922 929 4.038522 TGAGGCGAAATAGAGAATGGAGAG 59.961 45.833 0.00 0.00 0.00 3.20
923 930 3.960755 TGAGGCGAAATAGAGAATGGAGA 59.039 43.478 0.00 0.00 0.00 3.71
934 941 8.035394 GGAGATAATCTTACATGAGGCGAAATA 58.965 37.037 0.00 0.00 0.00 1.40
962 975 4.254492 GAGTGGAAAGGACGCTCTTATTT 58.746 43.478 0.00 0.00 41.13 1.40
978 995 1.336887 GCTTACGCTCAACAGAGTGGA 60.337 52.381 10.39 0.00 42.71 4.02
980 997 1.071605 GGCTTACGCTCAACAGAGTG 58.928 55.000 4.64 4.64 43.73 3.51
982 999 1.662629 CATGGCTTACGCTCAACAGAG 59.337 52.381 0.00 0.00 36.09 3.35
983 1000 1.275010 TCATGGCTTACGCTCAACAGA 59.725 47.619 0.00 0.00 36.09 3.41
989 1010 0.872021 CGAGGTCATGGCTTACGCTC 60.872 60.000 0.00 0.00 36.09 5.03
1215 1239 2.037367 CCGAGGAGAGGTGGTGGA 59.963 66.667 0.00 0.00 0.00 4.02
1370 1394 2.674380 ACTCCGGTAAGGCGTCGT 60.674 61.111 0.00 0.00 40.77 4.34
1371 1395 2.202570 CACTCCGGTAAGGCGTCG 60.203 66.667 0.00 0.00 35.37 5.12
1372 1396 2.183555 CCACTCCGGTAAGGCGTC 59.816 66.667 0.00 0.00 35.37 5.19
1373 1397 3.387947 CCCACTCCGGTAAGGCGT 61.388 66.667 0.00 0.00 38.77 5.68
1538 1562 2.102252 GAGAGGATGTAGCACCCAAGAG 59.898 54.545 0.00 0.00 0.00 2.85
1674 1701 4.363990 AGTGGCGTCACAGGCTCG 62.364 66.667 24.06 0.00 45.91 5.03
1714 1743 2.886862 TTCACCATTGTGCCAAGTTG 57.113 45.000 0.00 0.00 42.46 3.16
1717 1746 1.066716 CCCATTCACCATTGTGCCAAG 60.067 52.381 0.00 0.00 42.46 3.61
1763 1792 2.375146 TCAGCACGAGAATGTAGGCTA 58.625 47.619 0.00 0.00 0.00 3.93
1810 1839 1.852067 AAAACTCGCGGCACATCCAC 61.852 55.000 6.13 0.00 34.01 4.02
1823 1852 4.871933 AAATCATGACCCACCAAAACTC 57.128 40.909 0.00 0.00 0.00 3.01
1839 1868 6.431543 TCTCGCCAACCTTAAACATTAAATCA 59.568 34.615 0.00 0.00 0.00 2.57
1906 1935 2.229784 GCCAGACCCAGACAAAAAGATG 59.770 50.000 0.00 0.00 0.00 2.90
1958 1987 3.721087 ACGGAATCCTCTTGTGGAATT 57.279 42.857 0.00 0.00 39.85 2.17
1963 1992 2.028112 TCTCCAACGGAATCCTCTTGTG 60.028 50.000 0.00 0.00 0.00 3.33
2004 2039 1.654105 GAATGCTCGTCAAGTGTACCG 59.346 52.381 0.00 0.00 0.00 4.02
2016 2051 2.693069 ACCTTCAGTTCAGAATGCTCG 58.307 47.619 0.00 0.00 34.76 5.03
2019 2054 4.301628 CCAAAACCTTCAGTTCAGAATGC 58.698 43.478 0.00 0.00 37.88 3.56
2024 2059 2.031120 TGGCCAAAACCTTCAGTTCAG 58.969 47.619 0.61 0.00 37.88 3.02
2086 2121 3.559238 ACAAGGATCATTTGCGTCAAC 57.441 42.857 8.60 0.00 0.00 3.18
2091 2126 3.244976 GAACCAACAAGGATCATTTGCG 58.755 45.455 8.60 2.18 38.94 4.85
2094 2129 4.482990 ACAGGAACCAACAAGGATCATTT 58.517 39.130 0.00 0.00 40.79 2.32
2344 2387 3.243771 ACCCGTGTCACAAACAAAAACAA 60.244 39.130 3.42 0.00 40.31 2.83
2345 2388 2.296471 ACCCGTGTCACAAACAAAAACA 59.704 40.909 3.42 0.00 40.31 2.83
2346 2389 2.949142 ACCCGTGTCACAAACAAAAAC 58.051 42.857 3.42 0.00 40.31 2.43
2352 2395 3.315749 TCCAATTTACCCGTGTCACAAAC 59.684 43.478 3.42 0.00 0.00 2.93
2357 2400 4.468510 AGATACTCCAATTTACCCGTGTCA 59.531 41.667 0.00 0.00 0.00 3.58
2375 2418 8.251750 TGGCGAATGCTACAAAATATAGATAC 57.748 34.615 0.00 0.00 42.25 2.24
2379 2422 8.219436 CATTTGGCGAATGCTACAAAATATAG 57.781 34.615 14.26 0.00 38.79 1.31
2442 2485 2.580322 TGGACCTTGGGCATGATAAAGA 59.420 45.455 0.00 0.00 0.00 2.52
2443 2486 2.954318 CTGGACCTTGGGCATGATAAAG 59.046 50.000 0.00 0.00 0.00 1.85
2444 2487 2.949963 GCTGGACCTTGGGCATGATAAA 60.950 50.000 0.00 0.00 0.00 1.40
2446 2489 0.183492 GCTGGACCTTGGGCATGATA 59.817 55.000 0.00 0.00 0.00 2.15
2447 2490 1.076485 GCTGGACCTTGGGCATGAT 60.076 57.895 0.00 0.00 0.00 2.45
2448 2491 2.356278 GCTGGACCTTGGGCATGA 59.644 61.111 0.00 0.00 0.00 3.07
2449 2492 2.036098 TGCTGGACCTTGGGCATG 59.964 61.111 0.00 0.00 0.00 4.06
2450 2493 1.207488 TACTGCTGGACCTTGGGCAT 61.207 55.000 0.00 0.00 34.12 4.40
2451 2494 1.845664 TACTGCTGGACCTTGGGCA 60.846 57.895 0.00 0.00 0.00 5.36
2452 2495 1.377333 GTACTGCTGGACCTTGGGC 60.377 63.158 0.00 0.00 0.00 5.36
2453 2496 1.568504 TAGTACTGCTGGACCTTGGG 58.431 55.000 5.39 0.00 0.00 4.12
2485 2528 2.974698 ATATTGCCGAGCCTGCGC 60.975 61.111 0.00 0.00 0.00 6.09
2486 2529 2.941333 CATATTGCCGAGCCTGCG 59.059 61.111 0.00 0.00 0.00 5.18
2496 2539 6.128729 GCAAACAAATAAATCGGCATATTGC 58.871 36.000 0.00 0.00 44.08 3.56
2497 2540 7.231705 TGCAAACAAATAAATCGGCATATTG 57.768 32.000 0.00 0.00 0.00 1.90
2498 2541 7.840342 TTGCAAACAAATAAATCGGCATATT 57.160 28.000 0.00 0.00 31.21 1.28
2499 2542 7.840342 TTTGCAAACAAATAAATCGGCATAT 57.160 28.000 8.05 0.00 40.84 1.78
2510 2553 8.207545 AGGGACTTTAACATTTGCAAACAAATA 58.792 29.630 15.41 3.01 46.07 1.40
2513 2556 5.983540 AGGGACTTTAACATTTGCAAACAA 58.016 33.333 15.41 3.73 27.25 2.83
2514 2557 5.606348 AGGGACTTTAACATTTGCAAACA 57.394 34.783 15.41 0.00 27.25 2.83
2575 2619 6.381481 TCAAAAATGCAGGCAGTCATATAG 57.619 37.500 0.00 0.00 0.00 1.31
2586 2630 4.505808 TGCCATATGTTCAAAAATGCAGG 58.494 39.130 1.24 0.00 0.00 4.85
2613 2665 2.239681 ATCTCGGTCTCAAAGGAGGT 57.760 50.000 0.00 0.00 41.69 3.85
2614 2666 2.159028 GGAATCTCGGTCTCAAAGGAGG 60.159 54.545 0.00 0.00 41.69 4.30
2627 2679 5.463724 GCTACAGATAAAAGGTGGAATCTCG 59.536 44.000 0.00 0.00 0.00 4.04
2646 2699 9.903682 GTATAGGATAGAAATTACAACGCTACA 57.096 33.333 0.00 0.00 0.00 2.74
2662 2715 8.088981 GGACAACACAACATAGGTATAGGATAG 58.911 40.741 0.00 0.00 0.00 2.08
2663 2716 7.255695 CGGACAACACAACATAGGTATAGGATA 60.256 40.741 0.00 0.00 0.00 2.59
2673 2726 3.135225 TCCAACGGACAACACAACATAG 58.865 45.455 0.00 0.00 0.00 2.23
2703 2756 6.893583 ACAGGCATTTACATATGAAGAGTCT 58.106 36.000 10.38 0.00 0.00 3.24
2708 2761 8.092521 CCTCTTACAGGCATTTACATATGAAG 57.907 38.462 10.38 0.00 34.56 3.02
2724 2777 2.427506 GCCAAGTGGAACCTCTTACAG 58.572 52.381 0.18 2.82 37.80 2.74
2744 2797 7.039082 TGGAGTGATTGGGAGAAAATAAAAAGG 60.039 37.037 0.00 0.00 0.00 3.11
2760 2813 6.018016 GGGAAAACAAAACAATGGAGTGATTG 60.018 38.462 0.00 0.00 38.97 2.67
2769 2822 6.985645 TGAATGAGAGGGAAAACAAAACAATG 59.014 34.615 0.00 0.00 0.00 2.82
2770 2823 6.986231 GTGAATGAGAGGGAAAACAAAACAAT 59.014 34.615 0.00 0.00 0.00 2.71
2776 2829 4.453480 AGGTGAATGAGAGGGAAAACAA 57.547 40.909 0.00 0.00 0.00 2.83
2780 2833 7.728083 TCAAAAATAAGGTGAATGAGAGGGAAA 59.272 33.333 0.00 0.00 0.00 3.13
2781 2834 7.237982 TCAAAAATAAGGTGAATGAGAGGGAA 58.762 34.615 0.00 0.00 0.00 3.97
2834 2889 8.837099 ATCCCAAATTGGAAGTGAATATTGTA 57.163 30.769 14.62 0.00 40.96 2.41
2836 2891 8.480501 AGAATCCCAAATTGGAAGTGAATATTG 58.519 33.333 14.62 0.00 40.96 1.90
2938 2993 6.547510 CAGCTAACCTATTTTCTGCCCTATTT 59.452 38.462 0.00 0.00 0.00 1.40
2967 3022 7.415541 CCACGAATTGTCAATATCATCCTTTGT 60.416 37.037 0.00 0.00 0.00 2.83
3158 3216 6.556212 ACGCTCAAACGGATATATCTAGATG 58.444 40.000 15.79 10.88 37.37 2.90
3172 3232 4.201685 CCCTTATTACTTGACGCTCAAACG 60.202 45.833 2.82 0.00 35.73 3.60
3189 3249 7.698163 AAATGATACTTCCTCTGTCCCTTAT 57.302 36.000 0.00 0.00 0.00 1.73
3198 3258 6.268847 CCAGCCTACTAAATGATACTTCCTCT 59.731 42.308 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.