Multiple sequence alignment - TraesCS6B01G168300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G168300 chr6B 100.000 2783 0 0 1 2783 178274302 178271520 0.000000e+00 5140.0
1 TraesCS6B01G168300 chr6B 95.604 91 4 0 1942 2032 12465852 12465762 2.230000e-31 147.0
2 TraesCS6B01G168300 chr6B 94.872 39 2 0 2492 2530 632563238 632563200 8.320000e-06 62.1
3 TraesCS6B01G168300 chr6D 92.417 1978 66 36 11 1951 94601309 94603239 0.000000e+00 2745.0
4 TraesCS6B01G168300 chr6D 84.319 389 59 2 1075 1462 296348046 296347659 2.020000e-101 379.0
5 TraesCS6B01G168300 chr6D 91.633 251 17 4 2236 2485 94603364 94603611 7.380000e-91 344.0
6 TraesCS6B01G168300 chr6D 91.549 142 9 1 2045 2186 94603240 94603378 2.830000e-45 193.0
7 TraesCS6B01G168300 chr6D 95.556 90 4 0 1946 2035 11067854 11067943 8.030000e-31 145.0
8 TraesCS6B01G168300 chr6D 95.556 90 4 0 1946 2035 437348309 437348220 8.030000e-31 145.0
9 TraesCS6B01G168300 chr6A 91.388 1974 93 35 3 1951 114460058 114458137 0.000000e+00 2632.0
10 TraesCS6B01G168300 chr6A 93.711 159 7 1 2028 2186 114458144 114457989 4.630000e-58 235.0
11 TraesCS6B01G168300 chr6A 91.083 157 14 0 2236 2392 114457975 114457819 2.170000e-51 213.0
12 TraesCS6B01G168300 chr7A 89.027 401 44 0 1071 1471 662967093 662967493 5.350000e-137 497.0
13 TraesCS6B01G168300 chr7A 93.846 130 8 0 2653 2782 118482544 118482673 2.190000e-46 196.0
14 TraesCS6B01G168300 chr7A 93.893 131 6 2 2654 2783 696860874 696861003 2.190000e-46 196.0
15 TraesCS6B01G168300 chr7D 88.395 405 47 0 1067 1471 573192880 573193284 3.220000e-134 488.0
16 TraesCS6B01G168300 chr7D 91.176 102 9 0 1946 2047 188164442 188164341 3.740000e-29 139.0
17 TraesCS6B01G168300 chr7B 87.260 416 53 0 1056 1471 631405249 631405664 2.510000e-130 475.0
18 TraesCS6B01G168300 chr7B 95.699 93 4 0 1943 2035 465162744 465162836 1.730000e-32 150.0
19 TraesCS6B01G168300 chr2A 85.347 389 55 2 1075 1462 626589669 626589282 4.320000e-108 401.0
20 TraesCS6B01G168300 chr2B 84.615 390 56 4 1075 1462 568275150 568275537 4.350000e-103 385.0
21 TraesCS6B01G168300 chr2B 93.617 94 6 0 1945 2038 583156234 583156327 1.040000e-29 141.0
22 TraesCS6B01G168300 chr2D 84.319 389 59 2 1075 1462 483256313 483255926 2.020000e-101 379.0
23 TraesCS6B01G168300 chr3D 93.798 129 8 0 2655 2783 466382450 466382578 7.860000e-46 195.0
24 TraesCS6B01G168300 chr3D 96.629 89 3 0 1943 2031 138889865 138889953 6.210000e-32 148.0
25 TraesCS6B01G168300 chr3D 92.500 40 2 1 2492 2530 319350857 319350818 3.870000e-04 56.5
26 TraesCS6B01G168300 chr1D 91.667 132 11 0 2652 2783 445388672 445388803 1.700000e-42 183.0
27 TraesCS6B01G168300 chr4A 91.603 131 11 0 2653 2783 522132016 522132146 6.120000e-42 182.0
28 TraesCS6B01G168300 chr4A 90.000 110 5 5 1931 2039 112585032 112585136 1.340000e-28 137.0
29 TraesCS6B01G168300 chr4A 100.000 32 0 0 2495 2526 552808565 552808596 2.990000e-05 60.2
30 TraesCS6B01G168300 chrUn 90.840 131 12 0 2653 2783 94951563 94951693 2.850000e-40 176.0
31 TraesCS6B01G168300 chr5D 92.857 98 5 2 1946 2042 383306974 383306878 1.040000e-29 141.0
32 TraesCS6B01G168300 chr3A 96.875 32 1 0 2496 2527 649811415 649811446 1.000000e-03 54.7
33 TraesCS6B01G168300 chr1B 100.000 28 0 0 2500 2527 3708732 3708759 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G168300 chr6B 178271520 178274302 2782 True 5140.000000 5140 100.000000 1 2783 1 chr6B.!!$R2 2782
1 TraesCS6B01G168300 chr6D 94601309 94603611 2302 False 1094.000000 2745 91.866333 11 2485 3 chr6D.!!$F2 2474
2 TraesCS6B01G168300 chr6A 114457819 114460058 2239 True 1026.666667 2632 92.060667 3 2392 3 chr6A.!!$R1 2389

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
411 439 0.392461 TTTACTAGCGCTTGCCAGGG 60.392 55.0 18.68 0.0 40.41 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2366 2415 1.317613 TGACAAGTGTCCCAACATGC 58.682 50.0 8.91 0.0 44.15 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 0.666577 CTTGTTCGTCGTCTCCCACC 60.667 60.000 0.00 0.00 0.00 4.61
139 152 4.449131 TGATCCATGCTCTCTGATTTGTC 58.551 43.478 0.00 0.00 0.00 3.18
173 186 1.246056 TGCCTTGAACTGCTGCATCC 61.246 55.000 1.31 0.00 0.00 3.51
177 190 0.674581 TTGAACTGCTGCATCCTCGG 60.675 55.000 1.31 0.00 0.00 4.63
255 273 2.162408 GGGAATCAAGAACCAAGAAGCG 59.838 50.000 0.00 0.00 0.00 4.68
263 281 7.129109 TCAAGAACCAAGAAGCGTTATTTAG 57.871 36.000 0.00 0.00 0.00 1.85
270 288 5.163764 CCAAGAAGCGTTATTTAGTCATGCA 60.164 40.000 0.00 0.00 0.00 3.96
272 290 5.178797 AGAAGCGTTATTTAGTCATGCACT 58.821 37.500 0.00 0.00 39.41 4.40
273 291 5.292101 AGAAGCGTTATTTAGTCATGCACTC 59.708 40.000 0.00 0.00 36.43 3.51
276 294 3.245284 CGTTATTTAGTCATGCACTCCCG 59.755 47.826 0.00 0.00 36.43 5.14
277 295 4.439057 GTTATTTAGTCATGCACTCCCGA 58.561 43.478 0.00 0.00 36.43 5.14
278 296 2.380084 TTTAGTCATGCACTCCCGAC 57.620 50.000 0.00 0.00 36.43 4.79
281 299 2.284625 TCATGCACTCCCGACCCT 60.285 61.111 0.00 0.00 0.00 4.34
282 300 1.001120 TCATGCACTCCCGACCCTA 59.999 57.895 0.00 0.00 0.00 3.53
283 301 0.398522 TCATGCACTCCCGACCCTAT 60.399 55.000 0.00 0.00 0.00 2.57
314 342 7.301068 AGTTTTCTTCGTCTTCATCATCATC 57.699 36.000 0.00 0.00 0.00 2.92
321 349 4.214332 TCGTCTTCATCATCATCGACTAGG 59.786 45.833 0.00 0.00 0.00 3.02
326 354 6.758416 TCTTCATCATCATCGACTAGGTTTTG 59.242 38.462 0.00 0.00 0.00 2.44
329 357 5.147330 TCATCATCGACTAGGTTTTGTGT 57.853 39.130 0.00 0.00 0.00 3.72
333 361 3.530265 TCGACTAGGTTTTGTGTGTGT 57.470 42.857 0.00 0.00 0.00 3.72
334 362 3.191669 TCGACTAGGTTTTGTGTGTGTG 58.808 45.455 0.00 0.00 0.00 3.82
343 371 4.233789 GTTTTGTGTGTGTGTGTGTGAAT 58.766 39.130 0.00 0.00 0.00 2.57
344 372 5.394802 GTTTTGTGTGTGTGTGTGTGAATA 58.605 37.500 0.00 0.00 0.00 1.75
348 376 6.720012 TGTGTGTGTGTGTGTGAATATATC 57.280 37.500 0.00 0.00 0.00 1.63
350 378 6.934083 TGTGTGTGTGTGTGTGAATATATCTT 59.066 34.615 0.00 0.00 0.00 2.40
353 381 8.845227 TGTGTGTGTGTGTGAATATATCTTTTT 58.155 29.630 0.00 0.00 0.00 1.94
358 386 9.490663 GTGTGTGTGAATATATCTTTTTACTGC 57.509 33.333 0.00 0.00 0.00 4.40
394 422 8.926092 AAAGAAAAAGCTACTACCAGATCTTT 57.074 30.769 0.00 0.00 0.00 2.52
396 424 9.438228 AAGAAAAAGCTACTACCAGATCTTTAC 57.562 33.333 0.00 0.00 0.00 2.01
397 425 8.817876 AGAAAAAGCTACTACCAGATCTTTACT 58.182 33.333 0.00 0.00 0.00 2.24
400 428 6.887626 AGCTACTACCAGATCTTTACTAGC 57.112 41.667 0.00 2.67 0.00 3.42
401 429 5.470777 AGCTACTACCAGATCTTTACTAGCG 59.529 44.000 0.00 0.00 0.00 4.26
402 430 4.571372 ACTACCAGATCTTTACTAGCGC 57.429 45.455 0.00 0.00 0.00 5.92
403 431 4.208746 ACTACCAGATCTTTACTAGCGCT 58.791 43.478 17.26 17.26 0.00 5.92
404 432 4.645588 ACTACCAGATCTTTACTAGCGCTT 59.354 41.667 18.68 0.00 0.00 4.68
405 433 3.786635 ACCAGATCTTTACTAGCGCTTG 58.213 45.455 18.68 17.96 0.00 4.01
406 434 2.541762 CCAGATCTTTACTAGCGCTTGC 59.458 50.000 18.68 0.00 39.58 4.01
407 435 2.541762 CAGATCTTTACTAGCGCTTGCC 59.458 50.000 18.68 0.00 40.41 4.52
408 436 2.168521 AGATCTTTACTAGCGCTTGCCA 59.831 45.455 18.68 1.74 40.41 4.92
409 437 2.010145 TCTTTACTAGCGCTTGCCAG 57.990 50.000 18.68 9.76 40.41 4.85
410 438 1.009829 CTTTACTAGCGCTTGCCAGG 58.990 55.000 18.68 0.00 40.41 4.45
411 439 0.392461 TTTACTAGCGCTTGCCAGGG 60.392 55.000 18.68 0.00 40.41 4.45
412 440 1.261938 TTACTAGCGCTTGCCAGGGA 61.262 55.000 18.68 0.00 40.41 4.20
413 441 1.676678 TACTAGCGCTTGCCAGGGAG 61.677 60.000 18.68 6.63 40.41 4.30
450 478 5.219468 AGGGTTCCATTAATTCCATCCAA 57.781 39.130 0.00 0.00 0.00 3.53
472 500 2.197605 TGCGAGTTGACCGGTCAGA 61.198 57.895 34.25 22.98 41.13 3.27
474 502 1.213013 CGAGTTGACCGGTCAGAGG 59.787 63.158 34.25 21.54 41.13 3.69
518 546 1.520120 CGATCGCCATCACTGTGCT 60.520 57.895 0.26 0.00 0.00 4.40
564 592 0.614812 TCTTGCTACATCCTGCAGCA 59.385 50.000 8.66 0.00 44.36 4.41
632 660 1.069204 GTCTCAGGTTGTGTCAGCTCA 59.931 52.381 0.00 0.00 0.00 4.26
633 661 1.973515 TCTCAGGTTGTGTCAGCTCAT 59.026 47.619 0.00 0.00 0.00 2.90
670 703 2.698763 GCCAAAGCTCAGCTCAGCC 61.699 63.158 5.75 0.00 40.65 4.85
671 704 2.396955 CCAAAGCTCAGCTCAGCCG 61.397 63.158 5.75 0.00 40.65 5.52
672 705 1.375140 CAAAGCTCAGCTCAGCCGA 60.375 57.895 5.75 0.00 40.65 5.54
673 706 1.079266 AAAGCTCAGCTCAGCCGAG 60.079 57.895 5.75 5.42 40.65 4.63
674 707 1.539560 AAAGCTCAGCTCAGCCGAGA 61.540 55.000 14.50 0.00 42.34 4.04
675 708 1.947597 AAGCTCAGCTCAGCCGAGAG 61.948 60.000 14.50 10.28 42.34 3.20
774 814 4.520874 CCTAGTTCTCGCTGAATCCTGATA 59.479 45.833 0.00 0.00 36.99 2.15
781 825 2.418976 CGCTGAATCCTGATATGCCATG 59.581 50.000 0.00 0.00 0.00 3.66
870 916 5.221722 ACACTGGGACACTATAAGCCATATG 60.222 44.000 0.00 0.00 0.00 1.78
895 942 9.532494 TGGCCATAGAAATATATTATTGCAGTT 57.468 29.630 0.00 0.00 0.00 3.16
1122 1169 2.649034 GACTGGCAGACGTTCGGA 59.351 61.111 23.66 0.00 0.00 4.55
1231 1278 2.639286 GCAAGACCAAGGTGCACG 59.361 61.111 11.45 0.00 38.19 5.34
1474 1521 2.227089 GAAGAAGCGCCGGAAGAGGA 62.227 60.000 5.05 0.00 0.00 3.71
1507 1554 1.970114 TCCAAGCAGAAGCAGCAGC 60.970 57.895 0.00 0.00 45.49 5.25
1508 1555 2.265904 CCAAGCAGAAGCAGCAGCA 61.266 57.895 3.17 0.00 45.49 4.41
1682 1729 1.817911 GCCCTAGATGGCGTAGTCCC 61.818 65.000 0.00 0.00 42.54 4.46
1683 1730 1.524863 CCCTAGATGGCGTAGTCCCG 61.525 65.000 0.00 0.00 0.00 5.14
1684 1731 1.524863 CCTAGATGGCGTAGTCCCGG 61.525 65.000 0.00 0.00 0.00 5.73
1792 1839 3.487711 CGTGTTCAACTAGCTAGCTCGAT 60.488 47.826 23.26 6.89 0.00 3.59
1798 1845 1.606668 ACTAGCTAGCTCGATGCAGAC 59.393 52.381 23.26 0.00 45.94 3.51
1948 1997 3.603401 CGTCGAGCGTAATCCACTAGTAC 60.603 52.174 0.00 0.00 35.54 2.73
1949 1998 3.559242 GTCGAGCGTAATCCACTAGTACT 59.441 47.826 0.00 0.00 0.00 2.73
1950 1999 3.806521 TCGAGCGTAATCCACTAGTACTC 59.193 47.826 0.00 0.00 0.00 2.59
1951 2000 3.059051 CGAGCGTAATCCACTAGTACTCC 60.059 52.174 0.00 0.00 0.00 3.85
1952 2001 3.220940 AGCGTAATCCACTAGTACTCCC 58.779 50.000 0.00 0.00 0.00 4.30
1953 2002 3.117587 AGCGTAATCCACTAGTACTCCCT 60.118 47.826 0.00 0.00 0.00 4.20
1954 2003 3.252944 GCGTAATCCACTAGTACTCCCTC 59.747 52.174 0.00 0.00 0.00 4.30
1955 2004 3.819902 CGTAATCCACTAGTACTCCCTCC 59.180 52.174 0.00 0.00 0.00 4.30
1956 2005 4.446023 CGTAATCCACTAGTACTCCCTCCT 60.446 50.000 0.00 0.00 0.00 3.69
1957 2006 4.628661 AATCCACTAGTACTCCCTCCTT 57.371 45.455 0.00 0.00 0.00 3.36
1958 2007 5.745988 AATCCACTAGTACTCCCTCCTTA 57.254 43.478 0.00 0.00 0.00 2.69
1959 2008 5.745988 ATCCACTAGTACTCCCTCCTTAA 57.254 43.478 0.00 0.00 0.00 1.85
1960 2009 5.541258 TCCACTAGTACTCCCTCCTTAAA 57.459 43.478 0.00 0.00 0.00 1.52
1961 2010 5.267587 TCCACTAGTACTCCCTCCTTAAAC 58.732 45.833 0.00 0.00 0.00 2.01
1962 2011 5.016031 TCCACTAGTACTCCCTCCTTAAACT 59.984 44.000 0.00 0.00 0.00 2.66
1963 2012 6.218315 TCCACTAGTACTCCCTCCTTAAACTA 59.782 42.308 0.00 0.00 0.00 2.24
1964 2013 6.894103 CCACTAGTACTCCCTCCTTAAACTAA 59.106 42.308 0.00 0.00 0.00 2.24
1965 2014 7.564292 CCACTAGTACTCCCTCCTTAAACTAAT 59.436 40.741 0.00 0.00 0.00 1.73
1966 2015 9.638176 CACTAGTACTCCCTCCTTAAACTAATA 57.362 37.037 0.00 0.00 0.00 0.98
1973 2022 8.872134 ACTCCCTCCTTAAACTAATATAAGAGC 58.128 37.037 0.00 0.00 32.10 4.09
1974 2023 8.792830 TCCCTCCTTAAACTAATATAAGAGCA 57.207 34.615 0.00 0.00 32.10 4.26
1975 2024 9.393786 TCCCTCCTTAAACTAATATAAGAGCAT 57.606 33.333 0.00 0.00 32.10 3.79
2007 2056 9.918630 TTACTACTTTAGTGATTTAAACGCTCT 57.081 29.630 7.00 4.27 39.81 4.09
2008 2057 8.828688 ACTACTTTAGTGATTTAAACGCTCTT 57.171 30.769 7.00 0.00 37.69 2.85
2009 2058 9.918630 ACTACTTTAGTGATTTAAACGCTCTTA 57.081 29.630 7.00 0.00 37.69 2.10
2025 2074 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
2026 2075 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
2027 2076 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
2028 2077 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
2029 2078 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
2044 2093 3.185455 AGGGAGTAGCTCTTTTGGTGAT 58.815 45.455 0.00 0.00 0.00 3.06
2048 2097 5.944007 GGGAGTAGCTCTTTTGGTGATTTTA 59.056 40.000 0.00 0.00 0.00 1.52
2078 2127 4.747108 CGACTGAGGTAATTGATCATGGTC 59.253 45.833 0.00 0.00 0.00 4.02
2091 2140 8.843885 ATTGATCATGGTCATCTGTAATGTAG 57.156 34.615 10.04 0.00 0.00 2.74
2109 2158 5.159273 TGTAGTAATCTGCATGGTTGTGA 57.841 39.130 0.00 0.00 31.74 3.58
2162 2211 7.669427 TGAAATGTTGGCTTAATGAAACTCAT 58.331 30.769 0.00 0.00 39.09 2.90
2176 2225 7.944729 ATGAAACTCATAGCCAATTAAGTGT 57.055 32.000 1.80 0.00 34.88 3.55
2186 2235 9.638239 CATAGCCAATTAAGTGTTATGTTTGTT 57.362 29.630 12.71 0.00 0.00 2.83
2187 2236 9.855021 ATAGCCAATTAAGTGTTATGTTTGTTC 57.145 29.630 1.80 0.00 0.00 3.18
2188 2237 7.151976 AGCCAATTAAGTGTTATGTTTGTTCC 58.848 34.615 1.80 0.00 0.00 3.62
2189 2238 6.367695 GCCAATTAAGTGTTATGTTTGTTCCC 59.632 38.462 1.80 0.00 0.00 3.97
2190 2239 6.871492 CCAATTAAGTGTTATGTTTGTTCCCC 59.129 38.462 1.80 0.00 0.00 4.81
2191 2240 5.692613 TTAAGTGTTATGTTTGTTCCCCG 57.307 39.130 0.00 0.00 0.00 5.73
2192 2241 1.883926 AGTGTTATGTTTGTTCCCCGC 59.116 47.619 0.00 0.00 0.00 6.13
2196 2245 3.132289 TGTTATGTTTGTTCCCCGCAAAA 59.868 39.130 0.00 0.00 37.54 2.44
2281 2330 1.486310 TCATGGTTAGCTAGCACAGGG 59.514 52.381 18.83 7.08 37.02 4.45
2354 2403 7.103641 TCTGGTTCGCTGAGAAATACTAAAAT 58.896 34.615 0.00 0.00 41.10 1.82
2396 2445 7.727578 TGGGACACTTGTCATATCTAGTTTA 57.272 36.000 11.40 0.00 46.47 2.01
2424 2474 3.887110 TCAGGTTTGTAAGTCTCAGTCGA 59.113 43.478 0.00 0.00 0.00 4.20
2443 2493 6.689241 CAGTCGACTGAGTTGATACTGTATTC 59.311 42.308 36.73 0.00 46.59 1.75
2454 2504 9.388506 AGTTGATACTGTATTCCTTTGATCTTG 57.611 33.333 1.22 0.00 31.99 3.02
2456 2506 9.739276 TTGATACTGTATTCCTTTGATCTTGTT 57.261 29.630 1.22 0.00 0.00 2.83
2457 2507 9.166173 TGATACTGTATTCCTTTGATCTTGTTG 57.834 33.333 1.22 0.00 0.00 3.33
2458 2508 9.167311 GATACTGTATTCCTTTGATCTTGTTGT 57.833 33.333 1.22 0.00 0.00 3.32
2469 2519 8.755018 CCTTTGATCTTGTTGTACAAAATGTTC 58.245 33.333 10.51 11.86 37.69 3.18
2559 2609 8.726870 TTTTGATACTTATTTTAGGACGGAGG 57.273 34.615 0.00 0.00 0.00 4.30
2560 2610 6.415206 TGATACTTATTTTAGGACGGAGGG 57.585 41.667 0.00 0.00 0.00 4.30
2561 2611 6.138263 TGATACTTATTTTAGGACGGAGGGA 58.862 40.000 0.00 0.00 0.00 4.20
2562 2612 6.612456 TGATACTTATTTTAGGACGGAGGGAA 59.388 38.462 0.00 0.00 0.00 3.97
2563 2613 5.970501 ACTTATTTTAGGACGGAGGGAAT 57.029 39.130 0.00 0.00 0.00 3.01
2564 2614 8.731591 ATACTTATTTTAGGACGGAGGGAATA 57.268 34.615 0.00 0.00 0.00 1.75
2565 2615 7.628501 ACTTATTTTAGGACGGAGGGAATAT 57.371 36.000 0.00 0.00 0.00 1.28
2566 2616 8.731591 ACTTATTTTAGGACGGAGGGAATATA 57.268 34.615 0.00 0.00 0.00 0.86
2567 2617 9.335211 ACTTATTTTAGGACGGAGGGAATATAT 57.665 33.333 0.00 0.00 0.00 0.86
2568 2618 9.819267 CTTATTTTAGGACGGAGGGAATATATC 57.181 37.037 0.00 0.00 0.00 1.63
2569 2619 7.808279 ATTTTAGGACGGAGGGAATATATCA 57.192 36.000 0.00 0.00 0.00 2.15
2570 2620 6.852420 TTTAGGACGGAGGGAATATATCAG 57.148 41.667 0.00 0.00 0.00 2.90
2571 2621 4.405756 AGGACGGAGGGAATATATCAGT 57.594 45.455 0.00 0.00 0.00 3.41
2572 2622 4.090090 AGGACGGAGGGAATATATCAGTG 58.910 47.826 0.00 0.00 0.00 3.66
2573 2623 3.195825 GGACGGAGGGAATATATCAGTGG 59.804 52.174 0.00 0.00 0.00 4.00
2574 2624 4.087182 GACGGAGGGAATATATCAGTGGA 58.913 47.826 0.00 0.00 0.00 4.02
2575 2625 3.833070 ACGGAGGGAATATATCAGTGGAC 59.167 47.826 0.00 0.00 0.00 4.02
2576 2626 4.090090 CGGAGGGAATATATCAGTGGACT 58.910 47.826 0.00 0.00 0.00 3.85
2577 2627 4.528596 CGGAGGGAATATATCAGTGGACTT 59.471 45.833 0.00 0.00 0.00 3.01
2578 2628 5.012148 CGGAGGGAATATATCAGTGGACTTT 59.988 44.000 0.00 0.00 0.00 2.66
2579 2629 6.234177 GGAGGGAATATATCAGTGGACTTTG 58.766 44.000 0.00 0.00 0.00 2.77
2580 2630 6.192970 AGGGAATATATCAGTGGACTTTGG 57.807 41.667 0.00 0.00 0.00 3.28
2581 2631 5.911178 AGGGAATATATCAGTGGACTTTGGA 59.089 40.000 0.00 0.00 0.00 3.53
2582 2632 5.998363 GGGAATATATCAGTGGACTTTGGAC 59.002 44.000 0.00 0.00 0.00 4.02
2583 2633 6.183361 GGGAATATATCAGTGGACTTTGGACT 60.183 42.308 0.00 0.00 0.00 3.85
2584 2634 6.708054 GGAATATATCAGTGGACTTTGGACTG 59.292 42.308 0.00 0.00 38.79 3.51
2586 2636 3.692257 ATCAGTGGACTTTGGACTGAG 57.308 47.619 0.00 0.00 46.92 3.35
2587 2637 2.677914 TCAGTGGACTTTGGACTGAGA 58.322 47.619 0.00 0.00 40.88 3.27
2588 2638 2.365617 TCAGTGGACTTTGGACTGAGAC 59.634 50.000 0.00 0.00 40.88 3.36
2589 2639 1.694696 AGTGGACTTTGGACTGAGACC 59.305 52.381 0.00 0.00 0.00 3.85
2590 2640 1.694696 GTGGACTTTGGACTGAGACCT 59.305 52.381 2.18 0.00 0.00 3.85
2591 2641 2.897969 GTGGACTTTGGACTGAGACCTA 59.102 50.000 2.18 0.00 0.00 3.08
2592 2642 3.056465 GTGGACTTTGGACTGAGACCTAG 60.056 52.174 2.18 2.80 0.00 3.02
2593 2643 2.093921 GGACTTTGGACTGAGACCTAGC 60.094 54.545 2.18 0.00 0.00 3.42
2594 2644 1.903183 ACTTTGGACTGAGACCTAGCC 59.097 52.381 2.18 0.00 0.00 3.93
2595 2645 1.902508 CTTTGGACTGAGACCTAGCCA 59.097 52.381 2.18 0.00 0.00 4.75
2596 2646 1.267121 TTGGACTGAGACCTAGCCAC 58.733 55.000 2.18 0.00 0.00 5.01
2597 2647 0.114364 TGGACTGAGACCTAGCCACA 59.886 55.000 2.18 0.00 0.00 4.17
2598 2648 0.533032 GGACTGAGACCTAGCCACAC 59.467 60.000 0.00 0.00 0.00 3.82
2599 2649 1.551452 GACTGAGACCTAGCCACACT 58.449 55.000 0.00 0.00 0.00 3.55
2600 2650 2.620886 GGACTGAGACCTAGCCACACTA 60.621 54.545 0.00 0.00 0.00 2.74
2601 2651 2.424246 GACTGAGACCTAGCCACACTAC 59.576 54.545 0.00 0.00 0.00 2.73
2602 2652 2.225041 ACTGAGACCTAGCCACACTACA 60.225 50.000 0.00 0.00 0.00 2.74
2603 2653 2.826128 CTGAGACCTAGCCACACTACAA 59.174 50.000 0.00 0.00 0.00 2.41
2604 2654 3.236047 TGAGACCTAGCCACACTACAAA 58.764 45.455 0.00 0.00 0.00 2.83
2605 2655 3.838317 TGAGACCTAGCCACACTACAAAT 59.162 43.478 0.00 0.00 0.00 2.32
2606 2656 4.081642 TGAGACCTAGCCACACTACAAATC 60.082 45.833 0.00 0.00 0.00 2.17
2607 2657 3.838317 AGACCTAGCCACACTACAAATCA 59.162 43.478 0.00 0.00 0.00 2.57
2608 2658 4.081420 AGACCTAGCCACACTACAAATCAG 60.081 45.833 0.00 0.00 0.00 2.90
2609 2659 3.583086 ACCTAGCCACACTACAAATCAGT 59.417 43.478 0.00 0.00 0.00 3.41
2610 2660 4.184629 CCTAGCCACACTACAAATCAGTC 58.815 47.826 0.00 0.00 0.00 3.51
2611 2661 4.081420 CCTAGCCACACTACAAATCAGTCT 60.081 45.833 0.00 0.00 0.00 3.24
2612 2662 3.931578 AGCCACACTACAAATCAGTCTC 58.068 45.455 0.00 0.00 0.00 3.36
2613 2663 3.324846 AGCCACACTACAAATCAGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2614 2664 4.065088 GCCACACTACAAATCAGTCTCAA 58.935 43.478 0.00 0.00 0.00 3.02
2615 2665 4.083802 GCCACACTACAAATCAGTCTCAAC 60.084 45.833 0.00 0.00 0.00 3.18
2616 2666 5.056480 CCACACTACAAATCAGTCTCAACA 58.944 41.667 0.00 0.00 0.00 3.33
2617 2667 5.178252 CCACACTACAAATCAGTCTCAACAG 59.822 44.000 0.00 0.00 0.00 3.16
2618 2668 5.755375 CACACTACAAATCAGTCTCAACAGT 59.245 40.000 0.00 0.00 0.00 3.55
2619 2669 5.986135 ACACTACAAATCAGTCTCAACAGTC 59.014 40.000 0.00 0.00 0.00 3.51
2620 2670 5.985530 CACTACAAATCAGTCTCAACAGTCA 59.014 40.000 0.00 0.00 0.00 3.41
2621 2671 6.648310 CACTACAAATCAGTCTCAACAGTCAT 59.352 38.462 0.00 0.00 0.00 3.06
2622 2672 7.814587 CACTACAAATCAGTCTCAACAGTCATA 59.185 37.037 0.00 0.00 0.00 2.15
2623 2673 8.535335 ACTACAAATCAGTCTCAACAGTCATAT 58.465 33.333 0.00 0.00 0.00 1.78
2624 2674 9.376075 CTACAAATCAGTCTCAACAGTCATATT 57.624 33.333 0.00 0.00 0.00 1.28
2625 2675 8.627208 ACAAATCAGTCTCAACAGTCATATTT 57.373 30.769 0.00 0.00 0.00 1.40
2626 2676 9.071276 ACAAATCAGTCTCAACAGTCATATTTT 57.929 29.630 0.00 0.00 0.00 1.82
2627 2677 9.552114 CAAATCAGTCTCAACAGTCATATTTTC 57.448 33.333 0.00 0.00 0.00 2.29
2628 2678 8.853077 AATCAGTCTCAACAGTCATATTTTCA 57.147 30.769 0.00 0.00 0.00 2.69
2629 2679 8.853077 ATCAGTCTCAACAGTCATATTTTCAA 57.147 30.769 0.00 0.00 0.00 2.69
2630 2680 8.087982 TCAGTCTCAACAGTCATATTTTCAAC 57.912 34.615 0.00 0.00 0.00 3.18
2631 2681 7.933577 TCAGTCTCAACAGTCATATTTTCAACT 59.066 33.333 0.00 0.00 0.00 3.16
2632 2682 9.208022 CAGTCTCAACAGTCATATTTTCAACTA 57.792 33.333 0.00 0.00 0.00 2.24
2633 2683 9.209175 AGTCTCAACAGTCATATTTTCAACTAC 57.791 33.333 0.00 0.00 0.00 2.73
2634 2684 9.209175 GTCTCAACAGTCATATTTTCAACTACT 57.791 33.333 0.00 0.00 0.00 2.57
2635 2685 9.778741 TCTCAACAGTCATATTTTCAACTACTT 57.221 29.630 0.00 0.00 0.00 2.24
2651 2701 9.582431 TTCAACTACTTTATCTTCCTATTCGTG 57.418 33.333 0.00 0.00 0.00 4.35
2652 2702 8.746530 TCAACTACTTTATCTTCCTATTCGTGT 58.253 33.333 0.00 0.00 0.00 4.49
2658 2708 9.357161 ACTTTATCTTCCTATTCGTGTATCTCT 57.643 33.333 0.00 0.00 0.00 3.10
2663 2713 8.830201 TCTTCCTATTCGTGTATCTCTACTAC 57.170 38.462 0.00 0.00 0.00 2.73
2664 2714 8.649591 TCTTCCTATTCGTGTATCTCTACTACT 58.350 37.037 0.00 0.00 0.00 2.57
2665 2715 9.926158 CTTCCTATTCGTGTATCTCTACTACTA 57.074 37.037 0.00 0.00 0.00 1.82
2672 2722 9.822185 TTCGTGTATCTCTACTACTATTGTACA 57.178 33.333 0.00 0.00 0.00 2.90
2673 2723 9.254133 TCGTGTATCTCTACTACTATTGTACAC 57.746 37.037 0.00 0.00 37.25 2.90
2674 2724 9.038803 CGTGTATCTCTACTACTATTGTACACA 57.961 37.037 0.00 0.00 39.32 3.72
2696 2746 9.382275 ACACAAATTTTTGAACTTGAATTAGCT 57.618 25.926 11.21 0.00 40.55 3.32
2716 2766 2.559381 ATCTAGCAAGACCCTGGAGT 57.441 50.000 0.00 0.00 33.57 3.85
2717 2767 3.689872 ATCTAGCAAGACCCTGGAGTA 57.310 47.619 0.00 0.00 33.57 2.59
2718 2768 3.019799 TCTAGCAAGACCCTGGAGTAG 57.980 52.381 0.00 0.00 0.00 2.57
2719 2769 2.312140 TCTAGCAAGACCCTGGAGTAGT 59.688 50.000 0.00 0.00 0.00 2.73
2720 2770 2.031495 AGCAAGACCCTGGAGTAGTT 57.969 50.000 0.00 0.00 0.00 2.24
2721 2771 3.185880 AGCAAGACCCTGGAGTAGTTA 57.814 47.619 0.00 0.00 0.00 2.24
2722 2772 2.832733 AGCAAGACCCTGGAGTAGTTAC 59.167 50.000 0.00 0.00 0.00 2.50
2723 2773 2.565834 GCAAGACCCTGGAGTAGTTACA 59.434 50.000 0.00 0.00 0.00 2.41
2724 2774 3.007614 GCAAGACCCTGGAGTAGTTACAA 59.992 47.826 0.00 0.00 0.00 2.41
2725 2775 4.822026 CAAGACCCTGGAGTAGTTACAAG 58.178 47.826 0.00 0.00 0.00 3.16
2726 2776 2.832733 AGACCCTGGAGTAGTTACAAGC 59.167 50.000 0.00 0.00 0.00 4.01
2727 2777 1.907255 ACCCTGGAGTAGTTACAAGCC 59.093 52.381 0.00 0.00 0.00 4.35
2728 2778 1.906574 CCCTGGAGTAGTTACAAGCCA 59.093 52.381 0.00 0.00 0.00 4.75
2729 2779 2.505819 CCCTGGAGTAGTTACAAGCCAT 59.494 50.000 0.00 0.00 0.00 4.40
2730 2780 3.709653 CCCTGGAGTAGTTACAAGCCATA 59.290 47.826 0.00 0.00 0.00 2.74
2731 2781 4.348168 CCCTGGAGTAGTTACAAGCCATAT 59.652 45.833 0.00 0.00 0.00 1.78
2732 2782 5.542635 CCCTGGAGTAGTTACAAGCCATATA 59.457 44.000 0.00 0.00 0.00 0.86
2733 2783 6.213600 CCCTGGAGTAGTTACAAGCCATATAT 59.786 42.308 0.00 0.00 0.00 0.86
2734 2784 7.256691 CCCTGGAGTAGTTACAAGCCATATATT 60.257 40.741 0.00 0.00 0.00 1.28
2735 2785 8.157476 CCTGGAGTAGTTACAAGCCATATATTT 58.843 37.037 0.00 0.00 0.00 1.40
2736 2786 8.902540 TGGAGTAGTTACAAGCCATATATTTG 57.097 34.615 0.00 0.00 0.00 2.32
2737 2787 8.491134 TGGAGTAGTTACAAGCCATATATTTGT 58.509 33.333 6.53 6.53 38.48 2.83
2738 2788 9.338622 GGAGTAGTTACAAGCCATATATTTGTT 57.661 33.333 6.59 0.00 36.52 2.83
2740 2790 9.338622 AGTAGTTACAAGCCATATATTTGTTCC 57.661 33.333 6.59 0.26 36.52 3.62
2741 2791 9.116067 GTAGTTACAAGCCATATATTTGTTCCA 57.884 33.333 6.59 0.00 36.52 3.53
2742 2792 8.225603 AGTTACAAGCCATATATTTGTTCCAG 57.774 34.615 6.59 0.00 36.52 3.86
2743 2793 8.052748 AGTTACAAGCCATATATTTGTTCCAGA 58.947 33.333 6.59 0.00 36.52 3.86
2744 2794 8.682710 GTTACAAGCCATATATTTGTTCCAGAA 58.317 33.333 6.59 0.00 36.52 3.02
2745 2795 7.338800 ACAAGCCATATATTTGTTCCAGAAG 57.661 36.000 0.00 0.00 31.38 2.85
2746 2796 6.183360 ACAAGCCATATATTTGTTCCAGAAGC 60.183 38.462 0.00 0.00 31.38 3.86
2747 2797 5.699143 AGCCATATATTTGTTCCAGAAGCT 58.301 37.500 0.00 0.00 0.00 3.74
2748 2798 6.841601 AGCCATATATTTGTTCCAGAAGCTA 58.158 36.000 0.00 0.00 0.00 3.32
2749 2799 7.290061 AGCCATATATTTGTTCCAGAAGCTAA 58.710 34.615 0.00 0.00 0.00 3.09
2750 2800 7.779798 AGCCATATATTTGTTCCAGAAGCTAAA 59.220 33.333 0.00 0.00 0.00 1.85
2751 2801 7.862873 GCCATATATTTGTTCCAGAAGCTAAAC 59.137 37.037 0.00 0.00 0.00 2.01
2752 2802 8.902806 CCATATATTTGTTCCAGAAGCTAAACA 58.097 33.333 0.00 0.00 0.00 2.83
2755 2805 5.705609 TTTGTTCCAGAAGCTAAACATCC 57.294 39.130 0.00 0.00 32.16 3.51
2756 2806 4.365514 TGTTCCAGAAGCTAAACATCCA 57.634 40.909 0.00 0.00 0.00 3.41
2757 2807 4.072131 TGTTCCAGAAGCTAAACATCCAC 58.928 43.478 0.00 0.00 0.00 4.02
2758 2808 3.350219 TCCAGAAGCTAAACATCCACC 57.650 47.619 0.00 0.00 0.00 4.61
2759 2809 2.009774 CCAGAAGCTAAACATCCACCG 58.990 52.381 0.00 0.00 0.00 4.94
2760 2810 2.615493 CCAGAAGCTAAACATCCACCGT 60.615 50.000 0.00 0.00 0.00 4.83
2761 2811 3.074412 CAGAAGCTAAACATCCACCGTT 58.926 45.455 0.00 0.00 0.00 4.44
2762 2812 3.502211 CAGAAGCTAAACATCCACCGTTT 59.498 43.478 0.00 0.00 39.75 3.60
2763 2813 4.693566 CAGAAGCTAAACATCCACCGTTTA 59.306 41.667 0.00 0.00 37.69 2.01
2764 2814 5.354234 CAGAAGCTAAACATCCACCGTTTAT 59.646 40.000 0.00 0.00 37.97 1.40
2765 2815 5.585047 AGAAGCTAAACATCCACCGTTTATC 59.415 40.000 0.00 0.00 37.97 1.75
2766 2816 4.839121 AGCTAAACATCCACCGTTTATCA 58.161 39.130 0.00 0.00 37.97 2.15
2767 2817 4.876107 AGCTAAACATCCACCGTTTATCAG 59.124 41.667 0.00 0.00 37.97 2.90
2768 2818 4.634443 GCTAAACATCCACCGTTTATCAGT 59.366 41.667 0.00 0.00 37.97 3.41
2769 2819 5.813672 GCTAAACATCCACCGTTTATCAGTA 59.186 40.000 0.00 0.00 37.97 2.74
2770 2820 6.238022 GCTAAACATCCACCGTTTATCAGTAC 60.238 42.308 0.00 0.00 37.97 2.73
2771 2821 4.133013 ACATCCACCGTTTATCAGTACC 57.867 45.455 0.00 0.00 0.00 3.34
2772 2822 3.118519 ACATCCACCGTTTATCAGTACCC 60.119 47.826 0.00 0.00 0.00 3.69
2773 2823 2.538222 TCCACCGTTTATCAGTACCCA 58.462 47.619 0.00 0.00 0.00 4.51
2774 2824 2.498481 TCCACCGTTTATCAGTACCCAG 59.502 50.000 0.00 0.00 0.00 4.45
2775 2825 2.277084 CACCGTTTATCAGTACCCAGC 58.723 52.381 0.00 0.00 0.00 4.85
2776 2826 2.093658 CACCGTTTATCAGTACCCAGCT 60.094 50.000 0.00 0.00 0.00 4.24
2777 2827 2.167900 ACCGTTTATCAGTACCCAGCTC 59.832 50.000 0.00 0.00 0.00 4.09
2778 2828 2.167693 CCGTTTATCAGTACCCAGCTCA 59.832 50.000 0.00 0.00 0.00 4.26
2779 2829 3.369052 CCGTTTATCAGTACCCAGCTCAA 60.369 47.826 0.00 0.00 0.00 3.02
2780 2830 4.250464 CGTTTATCAGTACCCAGCTCAAA 58.750 43.478 0.00 0.00 0.00 2.69
2781 2831 4.693566 CGTTTATCAGTACCCAGCTCAAAA 59.306 41.667 0.00 0.00 0.00 2.44
2782 2832 5.163854 CGTTTATCAGTACCCAGCTCAAAAG 60.164 44.000 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.203480 GGCAGGCAACCAGGAACA 60.203 61.111 0.00 0.00 37.17 3.18
1 2 1.527433 GAAGGCAGGCAACCAGGAAC 61.527 60.000 0.00 0.00 37.17 3.62
13 14 0.784778 GACGACGAACAAGAAGGCAG 59.215 55.000 0.00 0.00 0.00 4.85
39 40 3.677121 CACTCACCAAGAAGACGATGAAG 59.323 47.826 0.00 0.00 0.00 3.02
139 152 5.840243 TCAAGGCACATAATCAATCAAGG 57.160 39.130 0.00 0.00 0.00 3.61
173 186 5.980116 CCTAGATTTGACTAACACATCCGAG 59.020 44.000 0.00 0.00 36.64 4.63
177 190 5.428253 TGCCCTAGATTTGACTAACACATC 58.572 41.667 0.00 0.00 36.33 3.06
223 236 6.326064 TGGTTCTTGATTCCCAAATTGAAAGA 59.674 34.615 0.00 0.00 33.76 2.52
255 273 4.270325 GTCGGGAGTGCATGACTAAATAAC 59.730 45.833 0.00 0.00 33.83 1.89
263 281 1.327690 TAGGGTCGGGAGTGCATGAC 61.328 60.000 0.00 0.00 0.00 3.06
276 294 6.755607 ACGAAGAAAACTAAATCGATAGGGTC 59.244 38.462 0.00 0.00 37.27 4.46
277 295 6.637657 ACGAAGAAAACTAAATCGATAGGGT 58.362 36.000 0.00 0.00 37.27 4.34
278 296 6.979238 AGACGAAGAAAACTAAATCGATAGGG 59.021 38.462 0.00 0.00 37.27 3.53
281 299 8.975410 TGAAGACGAAGAAAACTAAATCGATA 57.025 30.769 0.00 0.00 37.27 2.92
282 300 7.884816 TGAAGACGAAGAAAACTAAATCGAT 57.115 32.000 0.00 0.00 37.27 3.59
283 301 7.597369 TGATGAAGACGAAGAAAACTAAATCGA 59.403 33.333 0.07 0.00 37.27 3.59
314 342 2.933906 ACACACACACAAAACCTAGTCG 59.066 45.455 0.00 0.00 0.00 4.18
321 349 3.275400 TCACACACACACACACAAAAC 57.725 42.857 0.00 0.00 0.00 2.43
326 354 6.968131 AGATATATTCACACACACACACAC 57.032 37.500 0.00 0.00 0.00 3.82
333 361 9.225436 TGCAGTAAAAAGATATATTCACACACA 57.775 29.630 0.00 0.00 0.00 3.72
334 362 9.490663 GTGCAGTAAAAAGATATATTCACACAC 57.509 33.333 0.00 0.00 0.00 3.82
343 371 9.733556 TCTTTCTTGGTGCAGTAAAAAGATATA 57.266 29.630 0.00 0.00 0.00 0.86
344 372 8.635765 TCTTTCTTGGTGCAGTAAAAAGATAT 57.364 30.769 0.00 0.00 0.00 1.63
348 376 7.257722 TCTTTCTTTCTTGGTGCAGTAAAAAG 58.742 34.615 0.00 0.00 0.00 2.27
350 378 6.767524 TCTTTCTTTCTTGGTGCAGTAAAA 57.232 33.333 0.00 0.00 0.00 1.52
353 381 6.767524 TTTTCTTTCTTTCTTGGTGCAGTA 57.232 33.333 0.00 0.00 0.00 2.74
358 386 7.484140 AGTAGCTTTTTCTTTCTTTCTTGGTG 58.516 34.615 0.00 0.00 0.00 4.17
394 422 1.676678 CTCCCTGGCAAGCGCTAGTA 61.677 60.000 12.05 0.00 44.84 1.82
395 423 3.003173 TCCCTGGCAAGCGCTAGT 61.003 61.111 12.05 0.00 44.84 2.57
396 424 1.676678 TACTCCCTGGCAAGCGCTAG 61.677 60.000 12.05 3.61 45.83 3.42
397 425 1.684391 TACTCCCTGGCAAGCGCTA 60.684 57.895 12.05 0.00 38.60 4.26
398 426 3.003173 TACTCCCTGGCAAGCGCT 61.003 61.111 2.64 2.64 38.60 5.92
399 427 1.956629 TAGTACTCCCTGGCAAGCGC 61.957 60.000 0.00 0.00 37.44 5.92
400 428 0.103208 CTAGTACTCCCTGGCAAGCG 59.897 60.000 0.00 0.00 0.00 4.68
401 429 0.179070 GCTAGTACTCCCTGGCAAGC 60.179 60.000 0.00 0.00 38.66 4.01
402 430 0.103208 CGCTAGTACTCCCTGGCAAG 59.897 60.000 0.00 0.00 38.73 4.01
403 431 1.956629 GCGCTAGTACTCCCTGGCAA 61.957 60.000 0.00 0.00 38.73 4.52
404 432 2.423898 GCGCTAGTACTCCCTGGCA 61.424 63.158 0.00 0.00 38.73 4.92
405 433 0.822532 TAGCGCTAGTACTCCCTGGC 60.823 60.000 14.45 0.00 35.76 4.85
406 434 1.240256 CTAGCGCTAGTACTCCCTGG 58.760 60.000 31.93 7.40 0.00 4.45
407 435 0.594110 GCTAGCGCTAGTACTCCCTG 59.406 60.000 37.37 16.52 35.65 4.45
408 436 0.475044 AGCTAGCGCTAGTACTCCCT 59.525 55.000 37.37 24.95 46.79 4.20
409 437 2.181954 TAGCTAGCGCTAGTACTCCC 57.818 55.000 37.37 23.35 46.79 4.30
472 500 6.434340 GGGTGAGATTACTTCATTGAAAACCT 59.566 38.462 0.01 0.00 0.00 3.50
474 502 7.214467 TGGGTGAGATTACTTCATTGAAAAC 57.786 36.000 0.01 0.00 0.00 2.43
518 546 0.537188 GGCTAGCTACCTGCACAGAA 59.463 55.000 15.72 0.00 45.94 3.02
564 592 4.379652 GGACATGGCAAAAACAGAAACAT 58.620 39.130 0.00 0.00 0.00 2.71
670 703 0.871722 CCTACGATCTCAGGCTCTCG 59.128 60.000 0.00 0.00 37.17 4.04
671 704 1.975660 ACCTACGATCTCAGGCTCTC 58.024 55.000 8.90 0.00 35.14 3.20
672 705 2.428890 CAAACCTACGATCTCAGGCTCT 59.571 50.000 8.90 0.00 35.14 4.09
673 706 2.427453 TCAAACCTACGATCTCAGGCTC 59.573 50.000 8.90 0.00 35.14 4.70
674 707 2.428890 CTCAAACCTACGATCTCAGGCT 59.571 50.000 8.90 0.00 35.14 4.58
675 708 2.427453 TCTCAAACCTACGATCTCAGGC 59.573 50.000 8.90 0.00 35.14 4.85
676 709 4.720649 TTCTCAAACCTACGATCTCAGG 57.279 45.455 7.70 7.70 37.97 3.86
677 710 5.470368 TGTTTCTCAAACCTACGATCTCAG 58.530 41.667 0.00 0.00 40.67 3.35
774 814 1.075050 CTCCAATCCTAGCCATGGCAT 59.925 52.381 37.18 23.86 44.88 4.40
781 825 2.037385 ATCTCCCTCCAATCCTAGCC 57.963 55.000 0.00 0.00 0.00 3.93
870 916 9.793252 CAACTGCAATAATATATTTCTATGGCC 57.207 33.333 2.68 0.00 0.00 5.36
1287 1334 4.335647 CCCCACGCCTGCTTCAGT 62.336 66.667 0.00 0.00 0.00 3.41
1305 1352 3.790437 ACCAGCGCATCCAGGGAG 61.790 66.667 11.47 0.00 0.00 4.30
1474 1521 3.308705 GGACGACGTCTGGGGGTT 61.309 66.667 25.87 0.00 32.47 4.11
1668 1715 3.537874 GCCGGGACTACGCCATCT 61.538 66.667 2.18 0.00 0.00 2.90
1792 1839 8.889717 GCCTACTTAATTACTTAATTGTCTGCA 58.110 33.333 4.74 0.00 36.62 4.41
1948 1997 8.871125 TGCTCTTATATTAGTTTAAGGAGGGAG 58.129 37.037 0.00 0.00 0.00 4.30
1949 1998 8.792830 TGCTCTTATATTAGTTTAAGGAGGGA 57.207 34.615 0.00 0.00 0.00 4.20
1981 2030 9.918630 AGAGCGTTTAAATCACTAAAGTAGTAA 57.081 29.630 0.00 0.00 37.23 2.24
1982 2031 9.918630 AAGAGCGTTTAAATCACTAAAGTAGTA 57.081 29.630 0.00 0.00 37.23 1.82
1983 2032 8.828688 AAGAGCGTTTAAATCACTAAAGTAGT 57.171 30.769 0.00 0.00 40.28 2.73
1999 2048 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
2000 2049 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
2001 2050 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
2002 2051 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
2003 2052 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
2007 2056 9.878737 AGCTACTCCCTCTGTAAACTAATATAA 57.121 33.333 0.00 0.00 0.00 0.98
2008 2057 9.517868 GAGCTACTCCCTCTGTAAACTAATATA 57.482 37.037 0.00 0.00 0.00 0.86
2009 2058 8.228905 AGAGCTACTCCCTCTGTAAACTAATAT 58.771 37.037 0.00 0.00 38.21 1.28
2010 2059 7.584532 AGAGCTACTCCCTCTGTAAACTAATA 58.415 38.462 0.00 0.00 38.21 0.98
2011 2060 6.436890 AGAGCTACTCCCTCTGTAAACTAAT 58.563 40.000 0.00 0.00 38.21 1.73
2012 2061 5.828871 AGAGCTACTCCCTCTGTAAACTAA 58.171 41.667 0.00 0.00 38.21 2.24
2013 2062 5.453866 AGAGCTACTCCCTCTGTAAACTA 57.546 43.478 0.00 0.00 38.21 2.24
2014 2063 4.325084 AGAGCTACTCCCTCTGTAAACT 57.675 45.455 0.00 0.00 38.21 2.66
2015 2064 5.408880 AAAGAGCTACTCCCTCTGTAAAC 57.591 43.478 0.00 0.00 39.50 2.01
2016 2065 5.280011 CCAAAAGAGCTACTCCCTCTGTAAA 60.280 44.000 0.00 0.00 39.50 2.01
2017 2066 4.223032 CCAAAAGAGCTACTCCCTCTGTAA 59.777 45.833 0.00 0.00 39.50 2.41
2018 2067 3.769844 CCAAAAGAGCTACTCCCTCTGTA 59.230 47.826 0.00 0.00 39.50 2.74
2019 2068 2.569404 CCAAAAGAGCTACTCCCTCTGT 59.431 50.000 0.00 0.00 39.50 3.41
2020 2069 2.569404 ACCAAAAGAGCTACTCCCTCTG 59.431 50.000 0.00 0.00 39.50 3.35
2021 2070 2.569404 CACCAAAAGAGCTACTCCCTCT 59.431 50.000 0.00 0.00 41.25 3.69
2022 2071 2.567615 TCACCAAAAGAGCTACTCCCTC 59.432 50.000 0.00 0.00 0.00 4.30
2023 2072 2.621070 TCACCAAAAGAGCTACTCCCT 58.379 47.619 0.00 0.00 0.00 4.20
2024 2073 3.636153 ATCACCAAAAGAGCTACTCCC 57.364 47.619 0.00 0.00 0.00 4.30
2025 2074 5.966742 AAAATCACCAAAAGAGCTACTCC 57.033 39.130 0.00 0.00 0.00 3.85
2026 2075 7.435068 TGTAAAATCACCAAAAGAGCTACTC 57.565 36.000 0.00 0.00 0.00 2.59
2027 2076 8.409358 AATGTAAAATCACCAAAAGAGCTACT 57.591 30.769 0.00 0.00 0.00 2.57
2028 2077 9.774742 CTAATGTAAAATCACCAAAAGAGCTAC 57.225 33.333 0.00 0.00 0.00 3.58
2029 2078 8.458843 GCTAATGTAAAATCACCAAAAGAGCTA 58.541 33.333 0.00 0.00 0.00 3.32
2030 2079 7.315890 GCTAATGTAAAATCACCAAAAGAGCT 58.684 34.615 0.00 0.00 0.00 4.09
2044 2093 7.820386 TCAATTACCTCAGTCGCTAATGTAAAA 59.180 33.333 0.00 0.00 0.00 1.52
2048 2097 5.339008 TCAATTACCTCAGTCGCTAATGT 57.661 39.130 0.00 0.00 0.00 2.71
2078 2127 7.658982 ACCATGCAGATTACTACATTACAGATG 59.341 37.037 0.00 0.00 28.68 2.90
2091 2140 3.188460 ACGTTCACAACCATGCAGATTAC 59.812 43.478 0.00 0.00 0.00 1.89
2162 2211 8.301002 GGAACAAACATAACACTTAATTGGCTA 58.699 33.333 0.00 0.00 0.00 3.93
2176 2225 4.402056 TTTTTGCGGGGAACAAACATAA 57.598 36.364 0.00 0.00 36.77 1.90
2224 2273 9.599866 CACAAACATAACACTTCTAGATATCCA 57.400 33.333 0.00 0.00 0.00 3.41
2225 2274 9.601217 ACACAAACATAACACTTCTAGATATCC 57.399 33.333 0.00 0.00 0.00 2.59
2229 2278 9.998106 AGTAACACAAACATAACACTTCTAGAT 57.002 29.630 0.00 0.00 0.00 1.98
2230 2279 9.472361 GAGTAACACAAACATAACACTTCTAGA 57.528 33.333 0.00 0.00 0.00 2.43
2231 2280 8.709646 GGAGTAACACAAACATAACACTTCTAG 58.290 37.037 0.00 0.00 0.00 2.43
2232 2281 8.205512 TGGAGTAACACAAACATAACACTTCTA 58.794 33.333 0.00 0.00 0.00 2.10
2233 2282 7.051623 TGGAGTAACACAAACATAACACTTCT 58.948 34.615 0.00 0.00 0.00 2.85
2234 2283 7.254227 TGGAGTAACACAAACATAACACTTC 57.746 36.000 0.00 0.00 0.00 3.01
2235 2284 7.817418 ATGGAGTAACACAAACATAACACTT 57.183 32.000 0.00 0.00 0.00 3.16
2236 2285 7.817418 AATGGAGTAACACAAACATAACACT 57.183 32.000 0.00 0.00 0.00 3.55
2237 2286 8.132362 TGAAATGGAGTAACACAAACATAACAC 58.868 33.333 0.00 0.00 0.00 3.32
2238 2287 8.226819 TGAAATGGAGTAACACAAACATAACA 57.773 30.769 0.00 0.00 0.00 2.41
2354 2403 6.710295 GTGTCCCAACATGCATATTCACTATA 59.290 38.462 0.00 0.00 37.81 1.31
2366 2415 1.317613 TGACAAGTGTCCCAACATGC 58.682 50.000 8.91 0.00 44.15 4.06
2367 2416 5.188434 AGATATGACAAGTGTCCCAACATG 58.812 41.667 8.91 0.00 44.15 3.21
2403 2452 3.982058 GTCGACTGAGACTTACAAACCTG 59.018 47.826 8.70 0.00 38.09 4.00
2424 2474 7.907389 TCAAAGGAATACAGTATCAACTCAGT 58.093 34.615 0.00 0.00 31.97 3.41
2435 2485 7.936847 TGTACAACAAGATCAAAGGAATACAGT 59.063 33.333 0.00 0.00 0.00 3.55
2438 2488 9.959749 TTTTGTACAACAAGATCAAAGGAATAC 57.040 29.630 8.07 0.00 39.53 1.89
2443 2493 8.647143 AACATTTTGTACAACAAGATCAAAGG 57.353 30.769 8.07 1.77 39.53 3.11
2533 2583 9.169592 CCTCCGTCCTAAAATAAGTATCAAAAA 57.830 33.333 0.00 0.00 0.00 1.94
2534 2584 7.771826 CCCTCCGTCCTAAAATAAGTATCAAAA 59.228 37.037 0.00 0.00 0.00 2.44
2535 2585 7.126115 TCCCTCCGTCCTAAAATAAGTATCAAA 59.874 37.037 0.00 0.00 0.00 2.69
2536 2586 6.612456 TCCCTCCGTCCTAAAATAAGTATCAA 59.388 38.462 0.00 0.00 0.00 2.57
2537 2587 6.138263 TCCCTCCGTCCTAAAATAAGTATCA 58.862 40.000 0.00 0.00 0.00 2.15
2538 2588 6.661304 TCCCTCCGTCCTAAAATAAGTATC 57.339 41.667 0.00 0.00 0.00 2.24
2539 2589 7.628501 ATTCCCTCCGTCCTAAAATAAGTAT 57.371 36.000 0.00 0.00 0.00 2.12
2540 2590 8.731591 ATATTCCCTCCGTCCTAAAATAAGTA 57.268 34.615 0.00 0.00 0.00 2.24
2541 2591 5.970501 ATTCCCTCCGTCCTAAAATAAGT 57.029 39.130 0.00 0.00 0.00 2.24
2542 2592 9.819267 GATATATTCCCTCCGTCCTAAAATAAG 57.181 37.037 0.00 0.00 0.00 1.73
2543 2593 9.328975 TGATATATTCCCTCCGTCCTAAAATAA 57.671 33.333 0.00 0.00 0.00 1.40
2544 2594 8.904648 TGATATATTCCCTCCGTCCTAAAATA 57.095 34.615 0.00 0.00 0.00 1.40
2545 2595 7.458170 ACTGATATATTCCCTCCGTCCTAAAAT 59.542 37.037 0.00 0.00 0.00 1.82
2546 2596 6.785963 ACTGATATATTCCCTCCGTCCTAAAA 59.214 38.462 0.00 0.00 0.00 1.52
2547 2597 6.210784 CACTGATATATTCCCTCCGTCCTAAA 59.789 42.308 0.00 0.00 0.00 1.85
2548 2598 5.715279 CACTGATATATTCCCTCCGTCCTAA 59.285 44.000 0.00 0.00 0.00 2.69
2549 2599 5.262009 CACTGATATATTCCCTCCGTCCTA 58.738 45.833 0.00 0.00 0.00 2.94
2550 2600 4.090090 CACTGATATATTCCCTCCGTCCT 58.910 47.826 0.00 0.00 0.00 3.85
2551 2601 3.195825 CCACTGATATATTCCCTCCGTCC 59.804 52.174 0.00 0.00 0.00 4.79
2552 2602 4.082136 GTCCACTGATATATTCCCTCCGTC 60.082 50.000 0.00 0.00 0.00 4.79
2553 2603 3.833070 GTCCACTGATATATTCCCTCCGT 59.167 47.826 0.00 0.00 0.00 4.69
2554 2604 4.090090 AGTCCACTGATATATTCCCTCCG 58.910 47.826 0.00 0.00 0.00 4.63
2555 2605 6.234177 CAAAGTCCACTGATATATTCCCTCC 58.766 44.000 0.00 0.00 0.00 4.30
2556 2606 6.043243 TCCAAAGTCCACTGATATATTCCCTC 59.957 42.308 0.00 0.00 0.00 4.30
2557 2607 5.911178 TCCAAAGTCCACTGATATATTCCCT 59.089 40.000 0.00 0.00 0.00 4.20
2558 2608 5.998363 GTCCAAAGTCCACTGATATATTCCC 59.002 44.000 0.00 0.00 0.00 3.97
2559 2609 6.708054 CAGTCCAAAGTCCACTGATATATTCC 59.292 42.308 0.00 0.00 40.07 3.01
2560 2610 7.500992 TCAGTCCAAAGTCCACTGATATATTC 58.499 38.462 0.00 0.00 41.28 1.75
2561 2611 7.345653 TCTCAGTCCAAAGTCCACTGATATATT 59.654 37.037 1.64 0.00 44.29 1.28
2562 2612 6.841229 TCTCAGTCCAAAGTCCACTGATATAT 59.159 38.462 1.64 0.00 44.29 0.86
2563 2613 6.096987 GTCTCAGTCCAAAGTCCACTGATATA 59.903 42.308 1.64 0.00 44.29 0.86
2564 2614 5.026121 TCTCAGTCCAAAGTCCACTGATAT 58.974 41.667 1.64 0.00 44.29 1.63
2565 2615 4.220821 GTCTCAGTCCAAAGTCCACTGATA 59.779 45.833 1.64 0.00 44.29 2.15
2566 2616 3.007398 GTCTCAGTCCAAAGTCCACTGAT 59.993 47.826 1.64 0.00 44.29 2.90
2567 2617 2.365617 GTCTCAGTCCAAAGTCCACTGA 59.634 50.000 1.32 1.32 43.39 3.41
2568 2618 2.548920 GGTCTCAGTCCAAAGTCCACTG 60.549 54.545 0.00 0.00 39.18 3.66
2569 2619 1.694696 GGTCTCAGTCCAAAGTCCACT 59.305 52.381 0.00 0.00 0.00 4.00
2570 2620 1.694696 AGGTCTCAGTCCAAAGTCCAC 59.305 52.381 0.00 0.00 0.00 4.02
2571 2621 2.103153 AGGTCTCAGTCCAAAGTCCA 57.897 50.000 0.00 0.00 0.00 4.02
2572 2622 2.093921 GCTAGGTCTCAGTCCAAAGTCC 60.094 54.545 0.00 0.00 0.00 3.85
2573 2623 2.093921 GGCTAGGTCTCAGTCCAAAGTC 60.094 54.545 0.00 0.00 0.00 3.01
2574 2624 1.903183 GGCTAGGTCTCAGTCCAAAGT 59.097 52.381 0.00 0.00 0.00 2.66
2575 2625 1.902508 TGGCTAGGTCTCAGTCCAAAG 59.097 52.381 0.00 0.00 0.00 2.77
2576 2626 1.623811 GTGGCTAGGTCTCAGTCCAAA 59.376 52.381 0.00 0.00 0.00 3.28
2577 2627 1.267121 GTGGCTAGGTCTCAGTCCAA 58.733 55.000 0.00 0.00 0.00 3.53
2578 2628 0.114364 TGTGGCTAGGTCTCAGTCCA 59.886 55.000 0.00 0.00 0.00 4.02
2579 2629 0.533032 GTGTGGCTAGGTCTCAGTCC 59.467 60.000 0.00 0.00 0.00 3.85
2580 2630 1.551452 AGTGTGGCTAGGTCTCAGTC 58.449 55.000 0.00 0.00 0.00 3.51
2581 2631 2.225041 TGTAGTGTGGCTAGGTCTCAGT 60.225 50.000 0.00 0.00 0.00 3.41
2582 2632 2.447443 TGTAGTGTGGCTAGGTCTCAG 58.553 52.381 0.00 0.00 0.00 3.35
2583 2633 2.597578 TGTAGTGTGGCTAGGTCTCA 57.402 50.000 0.00 0.00 0.00 3.27
2584 2634 3.955650 TTTGTAGTGTGGCTAGGTCTC 57.044 47.619 0.00 0.00 0.00 3.36
2585 2635 3.838317 TGATTTGTAGTGTGGCTAGGTCT 59.162 43.478 0.00 0.00 0.00 3.85
2586 2636 4.184629 CTGATTTGTAGTGTGGCTAGGTC 58.815 47.826 0.00 0.00 0.00 3.85
2587 2637 3.583086 ACTGATTTGTAGTGTGGCTAGGT 59.417 43.478 0.00 0.00 0.00 3.08
2588 2638 4.081420 AGACTGATTTGTAGTGTGGCTAGG 60.081 45.833 0.00 0.00 0.00 3.02
2589 2639 5.078411 AGACTGATTTGTAGTGTGGCTAG 57.922 43.478 0.00 0.00 0.00 3.42
2590 2640 4.526650 TGAGACTGATTTGTAGTGTGGCTA 59.473 41.667 0.00 0.00 0.00 3.93
2591 2641 3.324846 TGAGACTGATTTGTAGTGTGGCT 59.675 43.478 0.00 0.00 0.00 4.75
2592 2642 3.664107 TGAGACTGATTTGTAGTGTGGC 58.336 45.455 0.00 0.00 0.00 5.01
2593 2643 5.056480 TGTTGAGACTGATTTGTAGTGTGG 58.944 41.667 0.00 0.00 0.00 4.17
2594 2644 5.755375 ACTGTTGAGACTGATTTGTAGTGTG 59.245 40.000 0.00 0.00 0.00 3.82
2595 2645 5.918608 ACTGTTGAGACTGATTTGTAGTGT 58.081 37.500 0.00 0.00 0.00 3.55
2596 2646 5.985530 TGACTGTTGAGACTGATTTGTAGTG 59.014 40.000 0.00 0.00 0.00 2.74
2597 2647 6.161855 TGACTGTTGAGACTGATTTGTAGT 57.838 37.500 0.00 0.00 0.00 2.73
2598 2648 8.939201 ATATGACTGTTGAGACTGATTTGTAG 57.061 34.615 0.00 0.00 0.00 2.74
2599 2649 9.725019 AAATATGACTGTTGAGACTGATTTGTA 57.275 29.630 0.00 0.00 0.00 2.41
2600 2650 8.627208 AAATATGACTGTTGAGACTGATTTGT 57.373 30.769 0.00 0.00 0.00 2.83
2601 2651 9.552114 GAAAATATGACTGTTGAGACTGATTTG 57.448 33.333 0.00 0.00 0.00 2.32
2602 2652 9.288576 TGAAAATATGACTGTTGAGACTGATTT 57.711 29.630 0.00 0.00 0.00 2.17
2603 2653 8.853077 TGAAAATATGACTGTTGAGACTGATT 57.147 30.769 0.00 0.00 0.00 2.57
2604 2654 8.725148 GTTGAAAATATGACTGTTGAGACTGAT 58.275 33.333 0.00 0.00 0.00 2.90
2605 2655 7.933577 AGTTGAAAATATGACTGTTGAGACTGA 59.066 33.333 0.00 0.00 0.00 3.41
2606 2656 8.092521 AGTTGAAAATATGACTGTTGAGACTG 57.907 34.615 0.00 0.00 0.00 3.51
2607 2657 9.209175 GTAGTTGAAAATATGACTGTTGAGACT 57.791 33.333 0.00 0.00 0.00 3.24
2608 2658 9.209175 AGTAGTTGAAAATATGACTGTTGAGAC 57.791 33.333 0.00 0.00 0.00 3.36
2609 2659 9.778741 AAGTAGTTGAAAATATGACTGTTGAGA 57.221 29.630 0.00 0.00 0.00 3.27
2625 2675 9.582431 CACGAATAGGAAGATAAAGTAGTTGAA 57.418 33.333 0.00 0.00 0.00 2.69
2626 2676 8.746530 ACACGAATAGGAAGATAAAGTAGTTGA 58.253 33.333 0.00 0.00 0.00 3.18
2627 2677 8.928270 ACACGAATAGGAAGATAAAGTAGTTG 57.072 34.615 0.00 0.00 0.00 3.16
2632 2682 9.357161 AGAGATACACGAATAGGAAGATAAAGT 57.643 33.333 0.00 0.00 0.00 2.66
2637 2687 9.439500 GTAGTAGAGATACACGAATAGGAAGAT 57.561 37.037 0.00 0.00 0.00 2.40
2638 2688 8.649591 AGTAGTAGAGATACACGAATAGGAAGA 58.350 37.037 0.00 0.00 0.00 2.87
2639 2689 8.836268 AGTAGTAGAGATACACGAATAGGAAG 57.164 38.462 0.00 0.00 0.00 3.46
2646 2696 9.822185 TGTACAATAGTAGTAGAGATACACGAA 57.178 33.333 0.00 0.00 0.00 3.85
2647 2697 9.254133 GTGTACAATAGTAGTAGAGATACACGA 57.746 37.037 0.00 0.00 33.01 4.35
2648 2698 9.038803 TGTGTACAATAGTAGTAGAGATACACG 57.961 37.037 0.00 0.00 41.64 4.49
2670 2720 9.382275 AGCTAATTCAAGTTCAAAAATTTGTGT 57.618 25.926 8.22 0.00 39.18 3.72
2695 2745 3.571590 ACTCCAGGGTCTTGCTAGATAG 58.428 50.000 0.05 0.00 31.86 2.08
2696 2746 3.689872 ACTCCAGGGTCTTGCTAGATA 57.310 47.619 0.05 0.00 31.86 1.98
2697 2747 2.559381 ACTCCAGGGTCTTGCTAGAT 57.441 50.000 0.05 0.00 31.86 1.98
2698 2748 2.312140 ACTACTCCAGGGTCTTGCTAGA 59.688 50.000 0.00 0.00 0.00 2.43
2699 2749 2.741145 ACTACTCCAGGGTCTTGCTAG 58.259 52.381 0.00 0.00 0.00 3.42
2700 2750 2.921834 ACTACTCCAGGGTCTTGCTA 57.078 50.000 0.00 0.00 0.00 3.49
2701 2751 2.031495 AACTACTCCAGGGTCTTGCT 57.969 50.000 0.00 0.00 0.00 3.91
2702 2752 2.565834 TGTAACTACTCCAGGGTCTTGC 59.434 50.000 0.00 0.00 0.00 4.01
2703 2753 4.822026 CTTGTAACTACTCCAGGGTCTTG 58.178 47.826 0.00 0.00 0.00 3.02
2704 2754 3.261137 GCTTGTAACTACTCCAGGGTCTT 59.739 47.826 0.00 0.00 0.00 3.01
2705 2755 2.832733 GCTTGTAACTACTCCAGGGTCT 59.167 50.000 0.00 0.00 0.00 3.85
2706 2756 2.093606 GGCTTGTAACTACTCCAGGGTC 60.094 54.545 0.00 0.00 0.00 4.46
2707 2757 1.907255 GGCTTGTAACTACTCCAGGGT 59.093 52.381 0.00 0.00 0.00 4.34
2708 2758 1.906574 TGGCTTGTAACTACTCCAGGG 59.093 52.381 0.00 0.00 0.00 4.45
2709 2759 3.914426 ATGGCTTGTAACTACTCCAGG 57.086 47.619 0.00 0.00 0.00 4.45
2710 2760 8.993121 CAAATATATGGCTTGTAACTACTCCAG 58.007 37.037 0.00 0.00 0.00 3.86
2711 2761 8.491134 ACAAATATATGGCTTGTAACTACTCCA 58.509 33.333 0.36 0.00 31.63 3.86
2712 2762 8.904099 ACAAATATATGGCTTGTAACTACTCC 57.096 34.615 0.36 0.00 31.63 3.85
2714 2764 9.338622 GGAACAAATATATGGCTTGTAACTACT 57.661 33.333 2.47 0.00 33.05 2.57
2715 2765 9.116067 TGGAACAAATATATGGCTTGTAACTAC 57.884 33.333 2.47 0.00 33.05 2.73
2716 2766 9.337396 CTGGAACAAATATATGGCTTGTAACTA 57.663 33.333 2.47 0.00 38.70 2.24
2717 2767 8.052748 TCTGGAACAAATATATGGCTTGTAACT 58.947 33.333 2.47 0.00 38.70 2.24
2718 2768 8.220755 TCTGGAACAAATATATGGCTTGTAAC 57.779 34.615 2.47 0.84 38.70 2.50
2719 2769 8.815565 TTCTGGAACAAATATATGGCTTGTAA 57.184 30.769 2.47 0.00 38.70 2.41
2720 2770 7.013274 GCTTCTGGAACAAATATATGGCTTGTA 59.987 37.037 2.47 0.00 38.70 2.41
2721 2771 6.183360 GCTTCTGGAACAAATATATGGCTTGT 60.183 38.462 0.00 0.00 38.70 3.16
2722 2772 6.040166 AGCTTCTGGAACAAATATATGGCTTG 59.960 38.462 0.00 0.00 38.70 4.01
2723 2773 6.131961 AGCTTCTGGAACAAATATATGGCTT 58.868 36.000 0.00 0.00 38.70 4.35
2724 2774 5.699143 AGCTTCTGGAACAAATATATGGCT 58.301 37.500 0.00 0.00 38.70 4.75
2725 2775 7.510549 TTAGCTTCTGGAACAAATATATGGC 57.489 36.000 0.00 0.00 38.70 4.40
2726 2776 8.902806 TGTTTAGCTTCTGGAACAAATATATGG 58.097 33.333 0.00 0.00 38.70 2.74
2729 2779 9.120538 GGATGTTTAGCTTCTGGAACAAATATA 57.879 33.333 0.00 0.00 38.70 0.86
2730 2780 7.615365 TGGATGTTTAGCTTCTGGAACAAATAT 59.385 33.333 0.00 0.00 38.70 1.28
2731 2781 6.945435 TGGATGTTTAGCTTCTGGAACAAATA 59.055 34.615 0.00 0.00 38.70 1.40
2732 2782 5.774690 TGGATGTTTAGCTTCTGGAACAAAT 59.225 36.000 0.00 0.00 38.70 2.32
2733 2783 5.009610 GTGGATGTTTAGCTTCTGGAACAAA 59.990 40.000 0.00 0.00 38.70 2.83
2734 2784 4.518970 GTGGATGTTTAGCTTCTGGAACAA 59.481 41.667 0.00 0.00 38.70 2.83
2735 2785 4.072131 GTGGATGTTTAGCTTCTGGAACA 58.928 43.478 0.00 0.00 36.55 3.18
2736 2786 3.440522 GGTGGATGTTTAGCTTCTGGAAC 59.559 47.826 0.00 0.00 0.00 3.62
2737 2787 3.686016 GGTGGATGTTTAGCTTCTGGAA 58.314 45.455 0.00 0.00 0.00 3.53
2738 2788 2.354704 CGGTGGATGTTTAGCTTCTGGA 60.355 50.000 0.00 0.00 0.00 3.86
2739 2789 2.009774 CGGTGGATGTTTAGCTTCTGG 58.990 52.381 0.00 0.00 0.00 3.86
2740 2790 2.699954 ACGGTGGATGTTTAGCTTCTG 58.300 47.619 0.00 0.00 0.00 3.02
2741 2791 3.418684 AACGGTGGATGTTTAGCTTCT 57.581 42.857 0.00 0.00 0.00 2.85
2742 2792 5.353123 TGATAAACGGTGGATGTTTAGCTTC 59.647 40.000 13.01 4.06 44.36 3.86
2743 2793 5.250200 TGATAAACGGTGGATGTTTAGCTT 58.750 37.500 13.01 0.00 44.36 3.74
2744 2794 4.839121 TGATAAACGGTGGATGTTTAGCT 58.161 39.130 13.01 0.00 44.36 3.32
2745 2795 4.634443 ACTGATAAACGGTGGATGTTTAGC 59.366 41.667 6.86 6.86 44.33 3.09
2746 2796 6.257193 GGTACTGATAAACGGTGGATGTTTAG 59.743 42.308 4.84 0.00 42.96 1.85
2747 2797 6.108015 GGTACTGATAAACGGTGGATGTTTA 58.892 40.000 1.32 1.32 43.60 2.01
2748 2798 4.939439 GGTACTGATAAACGGTGGATGTTT 59.061 41.667 0.00 0.00 41.97 2.83
2749 2799 4.510571 GGTACTGATAAACGGTGGATGTT 58.489 43.478 0.00 0.00 38.68 2.71
2750 2800 3.118519 GGGTACTGATAAACGGTGGATGT 60.119 47.826 0.00 0.00 38.68 3.06
2751 2801 3.118555 TGGGTACTGATAAACGGTGGATG 60.119 47.826 0.00 0.00 38.68 3.51
2752 2802 3.109151 TGGGTACTGATAAACGGTGGAT 58.891 45.455 0.00 0.00 38.68 3.41
2753 2803 2.498481 CTGGGTACTGATAAACGGTGGA 59.502 50.000 0.00 0.00 38.68 4.02
2754 2804 2.901249 CTGGGTACTGATAAACGGTGG 58.099 52.381 0.00 0.00 38.68 4.61
2755 2805 2.093658 AGCTGGGTACTGATAAACGGTG 60.094 50.000 0.00 0.00 38.68 4.94
2756 2806 2.167900 GAGCTGGGTACTGATAAACGGT 59.832 50.000 0.00 0.00 41.44 4.83
2757 2807 2.167693 TGAGCTGGGTACTGATAAACGG 59.832 50.000 0.00 0.00 0.00 4.44
2758 2808 3.520290 TGAGCTGGGTACTGATAAACG 57.480 47.619 0.00 0.00 0.00 3.60
2759 2809 6.183309 CTTTTGAGCTGGGTACTGATAAAC 57.817 41.667 0.00 0.00 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.